RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 027710
(220 letters)
>gnl|CDD|178001 PLN02373, PLN02373, soluble inorganic pyrophosphatase.
Length = 188
Score = 407 bits (1048), Expect = e-147
Identities = 168/194 (86%), Positives = 177/194 (91%), Gaps = 6/194 (3%)
Query: 27 SMSHRSVAAHPWHDLEIGPGAPAVCNCCKSLRQVVEIGKGGKVKYELDKASGLIKVDRVL 86
SMS RSVAAHPWHDLEIGPGAPA+ NC VVEI KG KVKYELDK +GLIKVDRVL
Sbjct: 1 SMSRRSVAAHPWHDLEIGPGAPAIFNC------VVEITKGSKVKYELDKKTGLIKVDRVL 54
Query: 87 YSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKI 146
YSSVVYPHNYGFIPRT+CED+DP+DVLVLMQEPVLPG FLR RAIGLMPMIDQGEKDDKI
Sbjct: 55 YSSVVYPHNYGFIPRTLCEDNDPLDVLVLMQEPVLPGCFLRARAIGLMPMIDQGEKDDKI 114
Query: 147 IAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAAIEAIKYS 206
IAVCADDPE+RHY DIKELPPHRLAEIRRFFEDYKKNENK+V V DFLPAEAAIEAI+YS
Sbjct: 115 IAVCADDPEYRHYTDIKELPPHRLAEIRRFFEDYKKNENKEVAVNDFLPAEAAIEAIQYS 174
Query: 207 MDLYASYIVESLRQ 220
MDLYA YIVESLR+
Sbjct: 175 MDLYAEYIVESLRR 188
>gnl|CDD|238239 cd00412, pyrophosphatase, Inorganic pyrophosphatase. These enzymes
hydrolyze inorganic pyrophosphate (PPi) to two molecules
of orthophosphates (Pi). The reaction requires bivalent
cations. The enzymes in general exist as homooligomers.
Length = 155
Score = 243 bits (623), Expect = 5e-83
Identities = 81/150 (54%), Positives = 107/150 (71%), Gaps = 1/150 (0%)
Query: 60 VVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEP 119
V+EI KG KYE+DK +G IKVDR LYSS+ YP NYGFIP+T+ +D DP+DVLV+ +EP
Sbjct: 6 VIEIPKGSNAKYEIDKETGPIKVDRFLYSSMGYPWNYGFIPQTLEDDGDPLDVLVIGEEP 65
Query: 120 VLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFED 179
+ PGS +R R +G++ MID+GE D K+IAV DDP + H DI ++PPH L EI+ FFE
Sbjct: 66 LFPGSVIRVRPLGVLKMIDEGETDWKVIAVPVDDPRYSHINDISDVPPHLLDEIKHFFEH 125
Query: 180 YKKNENKK-VDVEDFLPAEAAIEAIKYSMD 208
YK E KK V V + E A++ IK S++
Sbjct: 126 YKDLEGKKEVKVAGWKDKEEALKIIKESIE 155
>gnl|CDD|189686 pfam00719, Pyrophosphatase, Inorganic pyrophosphatase.
Length = 156
Score = 231 bits (591), Expect = 3e-78
Identities = 86/152 (56%), Positives = 109/152 (71%), Gaps = 1/152 (0%)
Query: 60 VVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEP 119
V+EI KG +VKYE+DK SGL+ VDRVLY+S+ YP NYGFIP+T+ D DP+DVLVL EP
Sbjct: 3 VIEIPKGSRVKYEIDKESGLLPVDRVLYTSMGYPFNYGFIPQTLEGDGDPLDVLVLGPEP 62
Query: 120 VLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFED 179
+ PGS +R R IG++ MID+GE DDKIIAV DDP + KDI++LPP L EI FFE
Sbjct: 63 LFPGSVVRVRPIGVLAMIDEGETDDKIIAVPVDDPRYDDIKDIEDLPPGLLDEIEHFFEH 122
Query: 180 YKKNE-NKKVDVEDFLPAEAAIEAIKYSMDLY 210
YK E K V VE + AE A + I+ +++ Y
Sbjct: 123 YKDLEEGKWVKVEGWGDAEEAKKEIEEAIERY 154
>gnl|CDD|223299 COG0221, Ppa, Inorganic pyrophosphatase [Energy production and
conversion].
Length = 171
Score = 191 bits (488), Expect = 2e-62
Identities = 82/176 (46%), Positives = 110/176 (62%), Gaps = 8/176 (4%)
Query: 36 HPWHDLEIGPGAPAVCNCCKSLRQVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHN 95
H + GP N V+EI KG +KYE+DK +G + VDR L + + YP N
Sbjct: 1 MDLHKIPAGP-DDEDINV------VIEIPKGSNIKYEVDKETGRLLVDRPLKTPMGYPVN 53
Query: 96 YGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPE 155
YGFIP T+ +D DP+DVLV+ +EP+ PG ++ R IG++ MID+GEKDDK+IAV DP
Sbjct: 54 YGFIPNTLSDDGDPLDVLVIGEEPLAPGCVIQARPIGVLKMIDEGEKDDKVIAVPKLDPR 113
Query: 156 FRHYKDIKELPPHRLAEIRRFFEDYKKNEN-KKVDVEDFLPAEAAIEAIKYSMDLY 210
+ H KDI +LP H L EI+ FFE YK E K V VE + AE A + IK +++ Y
Sbjct: 114 YEHIKDISDLPEHLLDEIQHFFETYKDLEKGKWVKVEGWEDAEEAKKEIKEAIERY 169
>gnl|CDD|179262 PRK01250, PRK01250, inorganic pyrophosphatase; Provisional.
Length = 176
Score = 165 bits (419), Expect = 7e-52
Identities = 70/156 (44%), Positives = 98/156 (62%), Gaps = 4/156 (2%)
Query: 60 VVEIGKGG-KVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQE 118
++EI +KYE+DK SG + VDR LY+++ YP NYGFIP T+ D DP+DVLV+
Sbjct: 19 IIEIPANSDPIKYEVDKESGALFVDRFLYTAMFYPCNYGFIPHTLSLDGDPVDVLVVTPY 78
Query: 119 PVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRF 176
P++PGS +RCR +G++ M D+ +D KIIAV D PE+ H KD+ +LP A+I+ F
Sbjct: 79 PLVPGSVIRCRPVGVLKMEDESGEDAKIIAVPHDKLSPEYDHIKDVNDLPELLKAQIKHF 138
Query: 177 FEDYKKNE-NKKVDVEDFLPAEAAIEAIKYSMDLYA 211
FE YK E K V VE + AE A I +++
Sbjct: 139 FEHYKDLEKGKWVKVEGWGGAEEAKAEIVEAIERAK 174
>gnl|CDD|179388 PRK02230, PRK02230, inorganic pyrophosphatase; Provisional.
Length = 184
Score = 162 bits (412), Expect = 9e-51
Identities = 66/154 (42%), Positives = 87/154 (56%), Gaps = 1/154 (0%)
Query: 61 VEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPV 120
+EI KG +KYE D+ + I VDR+L VYP NYGFI + D D +DVLV +
Sbjct: 9 IEIPKGSNIKYEYDRKTNKIVVDRILRGDFVYPANYGFIKEALDWDGDELDVLVYSDQKF 68
Query: 121 LPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDY 180
LPG+ L R IG M MID GE D K+IAV DD H +K+LP H L EI FF +Y
Sbjct: 69 LPGTVLNARIIGAMKMIDDGETDTKLIAVHDDDYRLDHINSLKDLPQHWLDEIEYFFSNY 128
Query: 181 KKNENKKV-DVEDFLPAEAAIEAIKYSMDLYASY 213
K + K + V+ F + A++ K ++L Y
Sbjct: 129 KNWKRKGITKVKGFEDEKWALKEYKECVELMKKY 162
>gnl|CDD|179080 PRK00642, PRK00642, inorganic pyrophosphatase; Provisional.
Length = 205
Score = 149 bits (378), Expect = 2e-45
Identities = 79/212 (37%), Positives = 102/212 (48%), Gaps = 29/212 (13%)
Query: 26 SSMSHRSVAAHPWHDLEIGPGAPAVCNCCKSLRQVVEIGKGGKVKYELDKASGLIKVDRV 85
S S A HPWH L +GP AP C +EI VKYELDKA+G +KVDR
Sbjct: 1 MSKFPLSRA-HPWHGLSLGPDAPESVCC------YIEITPFDTVKYELDKATGYLKVDRP 53
Query: 86 LYSSVVYPHNYGFIPRTICE------------------DSDPMDVLVLMQEPVLPGS-FL 126
S P YGFIPRT C D DP+D+ VL ++ + G+ L
Sbjct: 54 QKFSNFCPALYGFIPRTYCGDLSGKLSGEQSGREDIKGDGDPLDICVLTEKNITHGNILL 113
Query: 127 RCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKK---N 183
+ R IG + MID GE DDKIIAV DD + KDI E P L ++ +F YK
Sbjct: 114 QARPIGGLRMIDGGEADDKIIAVLEDDLVYGEIKDISECPGTLLDRLQHYFLTYKATPGE 173
Query: 184 ENKKVDVEDFLPAEAAIEAIKYSMDLYASYIV 215
K V++ E A + I+ + + YA+
Sbjct: 174 LIKGVEIVGIYGKEEAQKVIQLAHEDYANKFG 205
>gnl|CDD|178309 PLN02707, PLN02707, Soluble inorganic pyrophosphatase.
Length = 267
Score = 79.4 bits (196), Expect = 6e-18
Identities = 64/229 (27%), Positives = 104/229 (45%), Gaps = 40/229 (17%)
Query: 15 GPPVALNERI-LSSMSHRSVAAHPWHD--LEIGPGAPAVCNCCKSLRQVVEIGKGGKVKY 71
G L+ R+ S S + V+ PWHD L G G + VVEI K K
Sbjct: 38 GEAETLDYRVFFSDGSGKKVS--PWHDIPLHAGDG---------TFNFVVEIPKETSAKM 86
Query: 72 EL--DKASGLIKVDRVLYSSVVYPH----NYGFIPRT-------------ICEDSDPMDV 112
E+ D+ IK D YP+ NYG +P+T D+DP+DV
Sbjct: 87 EVATDEPFTPIKQDTKKGKLRDYPYNINWNYGLLPQTWEDPTHANPEVEGAFGDNDPVDV 146
Query: 113 LVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPH---R 169
+ + + G L+ + +G++ MID+GE D K++A+ ADDP+ D+ ++ H
Sbjct: 147 VEIGERAAKIGEVLKVKPLGVLAMIDEGELDWKVVAISADDPKASLVNDVDDVEKHFPGT 206
Query: 170 LAEIRRFFEDYKKNENKKVDV----EDFLPAEAAIEAIKYSMDLYASYI 214
L IR +F DYK + K + + + A++ I+ + + +A +
Sbjct: 207 LTAIRDWFRDYKIPDGKPANKFGLDNKPMDKDYALKVIEETNEAWAKLV 255
>gnl|CDD|213349 cd12789, RasGAP_plexin_C1, Ras-GTPase Activating Domain of
plexin-C1. Plexins form a conserved family of
transmembrane receptors for semaphorins and may be the
ancestors of semaphorins. Plexins are divided into four
types (A-D) according to sequence similarity. Plexin-C1
has been identified as the receptor of semaphorin 7A,
which plays regulatory roles in both the immune and
nervous systems. Unlike other semaphorins which act as
repulsive guidance cues, Sema7A enhances central and
peripheral axon growth and is required for proper axon
tract formation during embryonic development. Plexin-C1
is a potential tumor suppressor for melanoma
progression. The expression of Plexin-C1 is diminished
or absent in human melanoma cell lines. Cofilin, an
actin-binding protein involved in cell migration, is a
downstream target of Sema7A and Plexin-C1 signaling.
Melanoma invasion and metastasis may be promoted through
the loss of Plexin-C1 inhibitory signaling on cofilin
activation. Plexins contain a C-terminal RasGAP domain,
which functions as an enhancer of the hydrolysis of GTP
that is bound to Ras-GTPases. Plexins display GAP
activity towards the Ras homolog Rap. Although the Rho
(Ras homolog) GTPases are most closely related to
members of the Ras family, RhoGAP and RasGAP show no
sequence homology at their amino acid level. RasGTPases
function as molecular switches in a large number of of
signaling pathways. When bound to GTP they are in the on
state and when bound to GDP they are in the off state.
The RasGAP domain speeds up the hydrolysis of GTP in
Ras-like proteins acting as a negative regulator.
Length = 393
Score = 32.1 bits (73), Expect = 0.21
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 13/75 (17%)
Query: 152 DDPEFR-----HYKDIKELPPHRLAEIRRFF-EDYKKNENKKVDVEDFLPAEAAIEAIKY 205
D P+++ +YK I++LPP +E+ F ++ KK+EN +F A +E KY
Sbjct: 300 DIPQYKEEVKSYYKAIRDLPPLSSSELEEFLTQESKKHEN------EFNEEVALMEIYKY 353
Query: 206 SMDLYASYIVESLRQ 220
+ Y I+ L +
Sbjct: 354 -IVKYFDEILNKLER 367
>gnl|CDD|153378 cd07366, 3MGA_Dioxygenase, Subunit B of the Class III Extradiol
ring-cleavage dioxygenase, 3-O-Methylgallate
Dioxygenase, which catalyzes the oxidization and
subsequent ring-opening of 3-O-Methylgallate.
3-O-Methylgallate Dioxygenase catalyzes the oxidization
and subsequent ring-opening of 3-O-Methylgallate (3MGA)
between carbons 2 and 3. 3-O-Methylgallate Dioxygenase
is a key enzyme in the syringate degradation pathway, in
which the syringate is first converted to
3-O-Methylgallate by O-demethylase. This enzyme is a
member of the class III extradiol dioxygenase family, a
group of enzymes which uses a non-heme Fe(II) to cleave
aromatic rings between a hydroxylated carbon and an
adjacent non-hydroxylated carbon. LigAB-like enzymes are
usually composed of two subunits, designated A and B,
which form a tetramer composed of two copies of each
subunit. This model represents the catalytic subunit, B.
Length = 328
Score = 29.3 bits (66), Expect = 1.8
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 90 VVYPHNYGFIPRTICEDSDPMDVLVLMQ---EPVLPGSFLRCRAIG 132
V PH +GFI R I D V VL+ P P + RC G
Sbjct: 178 VGIPHAFGFIYRRIMGDLVIPVVPVLINTFYPPNQPSAR-RCFEFG 222
>gnl|CDD|223745 COG0673, MviM, Predicted dehydrogenases and related proteins
[General function prediction only].
Length = 342
Score = 29.1 bits (65), Expect = 2.0
Identities = 9/44 (20%), Positives = 13/44 (29%)
Query: 161 DIKELPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAAIEAIK 204
+ E+ F + + V ED L A EA
Sbjct: 286 LVPRRGNPYEGELEAFADAIRGGGEPLVSGEDALKALRLAEAAY 329
>gnl|CDD|192725 pfam11228, DUF3027, Protein of unknown function (DUF3027). This
family of proteins with unknown function appears to be
restricted to Actinobacteria.
Length = 194
Score = 28.4 bits (64), Expect = 2.1
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 7/39 (17%)
Query: 22 ERILSSMSHRSVAAHPWHDLEIGPG------APAVCNCC 54
R+LS R AA W++ + GP APA C+ C
Sbjct: 114 RRVLSREG-REEAAKRWYEGDYGPKSEIAKAAPASCSTC 151
>gnl|CDD|236404 PRK09193, PRK09193, indolepyruvate ferredoxin oxidoreductase;
Validated.
Length = 1165
Score = 29.0 bits (66), Expect = 2.2
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 9/42 (21%)
Query: 147 IAVCADDPEFRHYKDIKELPP-----HR--LAEIRRFFEDYK 181
I V D+PE Y + L P HR L ++R +
Sbjct: 568 IVVVTDEPE--KYDGVARLAPGVTVHHRDELDAVQRELREIP 607
>gnl|CDD|153276 cd07592, BAR_Endophilin_A, The Bin/Amphiphysin/Rvs (BAR) domain of
Endophilin-A. BAR domains are dimerization, lipid
binding and curvature sensing modules found in many
different proteins with diverse functions. Endophilins
are accessory proteins, localized at synapses, which
interact with the endocytic proteins, dynamin and
synaptojanin. They are essential for synaptic vesicle
formation from the plasma membrane. They interact with
voltage-gated calcium channels, thus linking vesicle
endocytosis to calcium regulation. They also play roles
in virus budding, mitochondrial morphology maintenance,
receptor-mediated endocytosis inhibition, and endosomal
sorting. Endophilins contain an N-terminal N-BAR domain
(BAR domain with an additional N-terminal amphipathic
helix), followed by a variable region containing proline
clusters, and a C-terminal SH3 domain. They are
classified into two types, A and B. Vertebrates contain
three endophilin-A isoforms. Endophilin-A proteins are
enriched in the brain and play multiple roles in
receptor-mediated endocytosis. They tubulate membranes
and regulate calcium influx into neurons to trigger the
activation of the endocytic machinery. They are also
involved in the sorting of plasma membrane proteins,
actin filament assembly, and the uncoating of
clathrin-coated vesicles for fusion with endosomes. The
BAR domains of endophilin-A1 and A3 form crescent-shaped
dimers that can detect membrane curvature and drive
membrane bending.
Length = 223
Score = 28.0 bits (63), Expect = 3.5
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 160 KDIKELPPHRLA-EIRRFFEDYKKNENKKVDVEDFLPAEAAIEAIK 204
KD+KE+ HR E RR DYKK + K E+ AE E K
Sbjct: 125 KDLKEINHHRKKLEGRRLDYDYKKRKQGKGPDEELKQAEEKFEESK 170
>gnl|CDD|177087 CHL00185, ycf59, magnesium-protoporphyrin IX monomethyl ester
cyclase; Provisional.
Length = 351
Score = 27.8 bits (62), Expect = 4.3
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 159 YKDIKELPPHRLAEIRRFFEDYKKNENKKVD 189
Y+ +++ P +R+ I +FFE + ++EN+ D
Sbjct: 179 YRHLEKNPEYRIYPIFKFFESWCQDENRHGD 209
>gnl|CDD|153311 cd07627, BAR_Vps5p, The Bin/Amphiphysin/Rvs (BAR) domain of yeast
Sorting Nexin Vps5p. BAR domains are dimerization,
lipid binding and curvature sensing modules found in
many different proteins with diverse functions. Sorting
nexins (SNXs) are Phox homology (PX) domain containing
proteins that are involved in regulating membrane
traffic and protein sorting in the endosomal system.
SNXs differ from each other in their lipid-binding
specificity, subcellular localization and specific
function in the endocytic pathway. A subset of SNXs also
contain BAR domains. The PX-BAR structural unit
determines the specific membrane targeting of SNXs.
Vsp5p is the yeast counterpart of human SNX1 and is part
of the retromer complex, which functions in the
endosome-to-Golgi retrieval of vacuolar protein sorting
receptor Vps10p, the Golgi-resident membrane protein
A-ALP, and endopeptidase Kex2. BAR domains form dimers
that bind to membranes, induce membrane bending and
curvature, and may also be involved in protein-protein
interactions.
Length = 216
Score = 27.3 bits (61), Expect = 5.0
Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 172 EIRRFFEDYKKNENKKVDVEDFLPAEAAIEAIKYSMDLYASY 213
E+ RF + + + + VE +L E+AIE+ K ++L+ ++
Sbjct: 176 ELERFERE-RVEDFRNS-VEIYL--ESAIESQKELIELWETF 213
>gnl|CDD|180982 PRK07452, PRK07452, DNA polymerase III subunit delta; Validated.
Length = 326
Score = 27.6 bits (62), Expect = 5.3
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 136 MIDQGEKDDKIIAVCAD--DPEFRHY---KDIKELPPHRL 170
+++ GE+D K+IA A +P+ R Y K+++ L +L
Sbjct: 252 LVESGERDVKVIAKAAGIGNPK-RIYFLRKEVQGLSSQQL 290
>gnl|CDD|225650 COG3108, COG3108, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 185
Score = 26.9 bits (60), Expect = 6.6
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 13/67 (19%)
Query: 123 GSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKK 182
+ R + L + GEK + A+ + Y L+ + R D+++
Sbjct: 32 AATPEPRILKL-YNLHTGEKAE------AEFKDNGGYD------QASLSGLNRLLRDWRQ 78
Query: 183 NENKKVD 189
NE ++D
Sbjct: 79 NEVVRMD 85
>gnl|CDD|149809 pfam08864, UPF0302, UPF0302 domain. This family is known as
UPF0302. It is currently uncharacterized.
Length = 106
Score = 26.1 bits (58), Expect = 7.2
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 146 IIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNENKKVDVE 191
I AV +++P F YK K + + F D + N ++ + ++
Sbjct: 52 ISAVGSEEPPFLFYKGNKV-----TTDTEKAFHDIRLNPDEPIYIQ 92
>gnl|CDD|192528 pfam10307, DUF2410, Hypothetical protein (DUF2410). This is a
family of proteins conserved in fungi. The function is
not known.There are two characteristic sequence motifs,
GGWW and TGR.
Length = 200
Score = 26.9 bits (60), Expect = 7.3
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 157 RHYKDIKELP-----PHRLAEIRRFFEDYKKNENKKVDVE 191
YK+ +E+ + R FFE + K ++ E
Sbjct: 130 DTYKEAEEIRIYEDRIKHVKGFRDFFESLNRTTRKPINAE 169
>gnl|CDD|184002 PRK13363, PRK13363, protocatechuate 4,5-dioxygenase subunit beta;
Provisional.
Length = 335
Score = 27.0 bits (60), Expect = 8.6
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 93 PHNYGFIPRTICEDSDPMDVLVLMQ---EPVLPGSFLRCRAIG 132
H +GF+ R + +D+ V VL+ P P + RC A+G
Sbjct: 185 GHAFGFVHRQLMKDNVLPTVPVLVNTFYPPNQP-TPRRCIALG 226
>gnl|CDD|216603 pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are
necessary for efficient DNA transposition. Contains
transposases for IS204, IS1001, IS1096 and IS1165.
Length = 244
Score = 26.8 bits (60), Expect = 8.8
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 14/50 (28%)
Query: 165 LPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAAIEAIKYSMDLYASYI 214
LP + ++ FFE + + KKV +A+ MD+ A Y
Sbjct: 31 LPGRKKETLKAFFEQLPEKDRKKV------------KAV--CMDMSAPYK 66
>gnl|CDD|234014 TIGR02786, addB_alphas, double-strand break repair protein AddB,
alphaproteobacterial type. AddAB is a system well
described in the Firmicutes as a replacement for RecBCD
in many prokaryotes for the repair of double stranded
break DNA damage. More recently, a distantly related
gene pair conserved in many alphaproteobacteria was
shown also to function in double-stranded break repair
in Rhizobium etli. This family consists of AddB proteins
of the alphaproteobacteial type [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1021
Score = 27.0 bits (60), Expect = 9.7
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 159 YKDIKELPPHRLAEIR-----RFFEDYKKNENKKVDVEDFLPAEAAIEAIKYSMDLYASY 213
+KDI P L +R E+ +E K E + A EA + + L +Y
Sbjct: 929 FKDIGAPTPANLYYVRLGGNGPVGEESILSEKGKGGKEPQDAPDLAEEAWERLIQLIRAY 988
>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily
of calcium sensors and calcium signal modulators; most
examples in this alignment model have 2 active canonical
EF hands. Ca2+ binding induces a conformational change
in the EF-hand motif, leading to the activation or
inactivation of target proteins. EF-hands tend to occur
in pairs or higher copy numbers.
Length = 63
Score = 24.8 bits (55), Expect = 9.7
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 171 AEIRRFFEDYKKNENKKVDVEDFL 194
EI + K+ + K+D E+FL
Sbjct: 36 EEIDEMIREVDKDGDGKIDFEEFL 59
>gnl|CDD|143442 cd07124, ALDH_PutA-P5CDH-RocA, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate
dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic
enzyme of the aldehyde dehydrogenase (ALDH) protein
superfamily. The proline catabolic enzymes, proline
dehydrogenase and Delta(1)-pyrroline-5-carboxylate
dehydrogenase (P5CDH), catalyze the two-step oxidation
of proline to glutamate; P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). In this CD, monofunctional enzyme
sequences such as seen in the Bacillus subtilis RocA
P5CDH are also present. These enzymes play important
roles in cellular redox control, superoxide generation,
and apoptosis.
Length = 512
Score = 26.8 bits (60), Expect = 9.8
Identities = 19/74 (25%), Positives = 24/74 (32%), Gaps = 23/74 (31%)
Query: 54 CKSLRQVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYG--FIPRTICEDSDPMD 111
+R+ +EIGK R+L V F+ TI D P
Sbjct: 363 RDRIRRYIEIGKSE---------------GRLLLGGEVLELAAEGYFVQPTIFADVPPDH 407
Query: 112 VLVLMQE----PVL 121
L QE PVL
Sbjct: 408 --RLAQEEIFGPVL 419
>gnl|CDD|223659 COG0586, DedA, Uncharacterized membrane-associated protein
[Function unknown].
Length = 208
Score = 26.5 bits (59), Expect = 9.8
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 156 FRHYKDIKELPPHRLAEIRRFFEDY 180
R + L +L + FE +
Sbjct: 86 LRKLWSYRLLKRKKLDKAELLFERH 110
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.138 0.415
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,658,478
Number of extensions: 1126621
Number of successful extensions: 1132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1116
Number of HSP's successfully gapped: 37
Length of query: 220
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 127
Effective length of database: 6,812,680
Effective search space: 865210360
Effective search space used: 865210360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.7 bits)