RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 027710
(220 letters)
>3q46_A TT-ippase; inorganic pyrophosphatase, hydrolase; HET: EPE; 0.99A
{Thermococcus thioreducens} PDB: 3r6e_A* 3q3l_A 3i98_A
3q4w_A 3q9m_A* 3r5u_A 3r5v_A* 3q5v_A* 1ude_A 1twl_A
Length = 178
Score = 276 bits (707), Expect = 8e-96
Identities = 78/176 (44%), Positives = 113/176 (64%), Gaps = 6/176 (3%)
Query: 36 HPWHDLEIGPGAPAVCNCCKSLRQVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHN 95
+P+H+LE GP P V ++EI KG + KYELDKA+GL+K+DRVLYS YP +
Sbjct: 2 NPFHELEPGPEVPEVVYA------LIEIPKGSRNKYELDKATGLLKLDRVLYSPFFYPVD 55
Query: 96 YGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPE 155
YG IP+T +D DP D++V+M+EPV P + + R IG+M M D G+KD K++AV +DP
Sbjct: 56 YGIIPQTWYDDGDPFDIMVIMREPVYPLTIIEARPIGIMKMEDSGDKDWKVLAVPVEDPY 115
Query: 156 FRHYKDIKELPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAAIEAIKYSMDLYA 211
F +KDI ++P L EI FF+ YK+ + K +E + AE A I ++++Y
Sbjct: 116 FNDWKDISDVPKAFLDEIAHFFQRYKELQGKTTKIEGWGNAEEAKREILRAIEMYK 171
>2prd_A Pyrophosphate phosphohydrolase; 2.00A {Thermus thermophilus} SCOP:
b.40.5.1
Length = 174
Score = 266 bits (682), Expect = 5e-92
Identities = 70/175 (40%), Positives = 97/175 (55%), Gaps = 9/175 (5%)
Query: 39 HDLEIGPGAPAVCNCCKSLRQVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGF 98
L +G AP V + V+E+ +G KYE D G IK+DRVL + YP +YGF
Sbjct: 4 KSLPVGDKAPEVVHM------VIEVPRGSGNKYEYDPDLGAIKLDRVLPGAQFYPGDYGF 57
Query: 99 IPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRH 158
IP T+ ED DP+D LVL P+LPG + R +GL+ M D+ D K+I V A+D H
Sbjct: 58 IPSTLAEDGDPLDGLVLSTYPLLPGVVVEVRVVGLLLMEDEKGGDAKVIGVVAEDQRLDH 117
Query: 159 YKDIKELPPHRLAEIRRFFEDYKKNENKK---VDVEDFLPAEAAIEAIKYSMDLY 210
+DI ++P EI+ FFE YK E KK V V + +AA+E ++ + Y
Sbjct: 118 IQDIGDVPEGVKQEIQHFFETYKALEAKKGKWVKVTGWRDRKAALEEVRACIARY 172
>3gvf_A Inorganic pyrophosphatase; structural genomics, hydrolase, S
structural genomics center for infectious disease,
ssgcid; HET: PGE; 1.75A {Burkholderia pseudomallei
1710B} PDB: 3d63_A* 3eiy_A 3ej0_A* 3ej2_A* 3eiz_A*
Length = 196
Score = 263 bits (675), Expect = 9e-91
Identities = 66/189 (34%), Positives = 101/189 (53%), Gaps = 10/189 (5%)
Query: 26 SSMSHRSVAAHPWHDLEIGPGAPAVCNCCKSLRQVVEIGKGGK-VKYELDKASGLIKVDR 84
+ + + ++ G P N ++EI + VKYE DKA GL+ VDR
Sbjct: 12 LEAQTQGPGSMSFSNVPAGKDLPQDFNV------IIEIPAQSEPVKYEADKALGLLVVDR 65
Query: 85 VLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDD 144
+ + + YP NYGFIP+T+ D DP+DVLV+ P+L GS +R RA+G++ M D+ D
Sbjct: 66 FIGTGMRYPVNYGFIPQTLSGDGDPVDVLVITPFPLLAGSVVRARALGMLKMTDESGVDA 125
Query: 145 KIIAVCADD--PEFRHYKDIKELPPHRLAEIRRFFEDYKKNENKK-VDVEDFLPAEAAIE 201
K++AV D P + K I ++P + +I+ FFE YK E K V VE + +AA +
Sbjct: 126 KLVAVPHDKVCPMTANLKSIDDVPAYLKDQIKHFFEQYKALEKGKWVKVEGWDGIDAAHK 185
Query: 202 AIKYSMDLY 210
I + +
Sbjct: 186 EITDGVANF 194
>1sxv_A Inorganic pyrophosphatase; structural genomics, ppase,, hydrolase;
1.30A {Mycobacterium tuberculosis} PDB: 1wcf_A 2uxs_A
4ecp_A
Length = 172
Score = 262 bits (672), Expect = 2e-90
Identities = 58/174 (33%), Positives = 94/174 (54%), Gaps = 7/174 (4%)
Query: 41 LEIGPGAPAVCNCCKSLRQVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIP 100
+ +EI KG + KYE+D +G +++DR LY+ + YP +YGFI
Sbjct: 3 SSHHHHHHMQFDV------TIEIPKGQRNKYEVDHETGRVRLDRYLYTPMAYPTDYGFIE 56
Query: 101 RTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYK 160
T+ +D DP+D LVL+ +PV PG + R +G+ M+D+ DDK++ V A DP + H +
Sbjct: 57 DTLGDDGDPLDALVLLPQPVFPGVLVAARPVGMFRMVDEHGGDDKVLCVPAGDPRWDHVQ 116
Query: 161 DIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAEAAIEAIKYSMDLYASY 213
DI ++P L I+ FF YK E K V D++ A ++ S++ + +
Sbjct: 117 DIGDVPAFELDAIKHFFVHYKDLEPGKFVKAADWVDRAEAEAEVQRSVERFKAG 170
>3ld3_A Inorganic pyrophosphatase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
hydrolase; 1.75A {Anaplasma phagocytophilum} PDB: 3lo0_A
Length = 199
Score = 263 bits (673), Expect = 3e-90
Identities = 66/197 (33%), Positives = 103/197 (52%), Gaps = 12/197 (6%)
Query: 20 LNERILSSMSHRSVAAHP--WHDLEIGPGAPAVCNCCKSLRQVVEIGKGGK-VKYELDKA 76
+ + ++ ++ D+ G AP N V+E+ + VKYE D+
Sbjct: 4 HHHHHMGTLEAQTQGPGSMNLDDIGSGSNAPEEVNV------VIEVSQDSHPVKYEFDEK 57
Query: 77 SGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPM 136
+G + VDR L +++ YP NYGFIP TI D DP+DVLVL + PV+PG+ + R +G++ M
Sbjct: 58 NGALWVDRFLPTAMYYPCNYGFIPNTIAGDGDPVDVLVLARFPVMPGAVICVRPVGVLMM 117
Query: 137 IDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNENKK-VDVEDF 193
D+ +D K++AV A D + + + +LP L I FF YKK E K V V +
Sbjct: 118 NDEKGEDAKVLAVPATKVDQYYGNIVNYSDLPSSFLDSISHFFSFYKKLEKDKFVSVGCW 177
Query: 194 LPAEAAIEAIKYSMDLY 210
A +A E I+ ++
Sbjct: 178 QDAASAKELIRSAIIAA 194
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase);
thermostability, magnesium, hydrolase; 2.70A {Sulfolobus
acidocaldarius} SCOP: b.40.5.1
Length = 173
Score = 261 bits (670), Expect = 3e-90
Identities = 75/175 (42%), Positives = 101/175 (57%), Gaps = 9/175 (5%)
Query: 40 DLEIGPGAPAVCNCCKSLRQVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFI 99
L G AP V N +VEI +G +KYE D G+IKVDRVLY+S+ YP NYGFI
Sbjct: 2 KLSPGKNAPDVVNV------LVEIPQGSNIKYEYDDEEGVIKVDRVLYTSMNYPFNYGFI 55
Query: 100 PRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFR 157
P T+ ED DP+DVLV+ + PGS + R IG++ M D+ +D KI+AV D DP F
Sbjct: 56 PGTLEEDGDPLDVLVITNYQLYPGSVIEVRPIGILYMKDEEGEDAKIVAVPKDKTDPSFS 115
Query: 158 HYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAEAAIEAIKYSMDLYA 211
+ KDI +LP +I FFE YK+ E K V + + A A I+ ++ +
Sbjct: 116 NIKDINDLPQATKNKIVHFFEHYKELEPGKYVKISGWGSATEAKNRIQLAIKRVS 170
>2bqx_A Inorganic pyrophosphatase; hydrolase; 1.90A {Helicobacter pylori}
PDB: 1ygz_A 2bqy_A
Length = 173
Score = 257 bits (658), Expect = 2e-88
Identities = 71/175 (40%), Positives = 101/175 (57%), Gaps = 10/175 (5%)
Query: 39 HDLEIGPGAPAVCNCCKSLRQVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGF 98
LE+ A ++ V+EI K +KYELDK SG + VDRVLY + YP NYGF
Sbjct: 4 EKLEVSHDADSL-CV------VIEISKHSNIKYELDKESGALMVDRVLYGAQNYPANYGF 56
Query: 99 IPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEF 156
+P T+ D DP+D LVL GS ++ R +G++ M D+ D+K+IA+ D DP
Sbjct: 57 VPNTLGSDGDPVDALVLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLIALPIDKIDPTH 116
Query: 157 RHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAEAAIEAIKYSMDLY 210
+ KDI +L H L +I+ FFE YK E NK V V+ F E+AI+ ++ ++ Y
Sbjct: 117 SYVKDIDDLSKHTLDKIKHFFETYKDLEPNKWVKVKGFENKESAIKVLEKAIKAY 171
>2au7_A Inorganic pyrophosphatase; hydrolase, mutant; 1.05A {Escherichia
coli} PDB: 1i40_A 1i6t_A 1igp_A 1obw_A 2au6_A 2au8_A
2au9_A 2auu_A 1mjy_A 1faj_A 1ino_A 1ipw_A 1jfd_A 2eip_A
1mjz_A 1mjx_A 1mjw_A 3i4q_A*
Length = 175
Score = 253 bits (649), Expect = 5e-87
Identities = 66/176 (37%), Positives = 94/176 (53%), Gaps = 10/176 (5%)
Query: 39 HDLEIGPGAPAVCNCCKSLRQVVEIGKGGK-VKYELDKASGLIKVDRVLYSSVVYPHNYG 97
++ G P V+EI +KYE+DK SG + VD+ + +++ YP NYG
Sbjct: 3 LNVPAGKDLPEDIYV------VIEIPANADPIKYEIDKESGALFVDQFMSTAMFYPCNYG 56
Query: 98 FIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPE 155
+I T+ D DP+DVLV P+ PGS RCR +G++ M D+ +D K++AV E
Sbjct: 57 YINHTLSLDGDPVDVLVPTPYPLQPGSVTRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKE 116
Query: 156 FRHYKDIKELPPHRLAEIRRFFEDYKKNENKK-VDVEDFLPAEAAIEAIKYSMDLY 210
+ H KD+ +LP A+I FFE YK E K V VE + AEAA I S +
Sbjct: 117 YDHIKDVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEGWENAEAAKAEIVASFERA 172
>3fq3_A Inorganic pyrophosphatase:bacterial/archaeal INOR pyrophosphatase;
ssgcid, inorganic phosphatase; 1.90A {Brucella
melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3sw5_A
Length = 197
Score = 254 bits (650), Expect = 7e-87
Identities = 64/198 (32%), Positives = 102/198 (51%), Gaps = 12/198 (6%)
Query: 19 ALNERILSSMSHRSVAAHP--WHDLEIGPGAPAVCNCCKSLRQVVEIGKGGK-VKYELDK 75
+ + ++ ++ + IG P N ++E+ GG+ +KYE+DK
Sbjct: 3 HHHHHHMGTLEAQTQGPGSMNIDAISIGSNPPEDVNV------IIEVPVGGQPIKYEMDK 56
Query: 76 ASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMP 135
+G + VDR LY+ + YP NYGF+P T+ ED DP+DVLV P++PG + R IG++
Sbjct: 57 KAGALIVDRFLYTPMTYPGNYGFVPHTLSEDGDPIDVLVCNTRPLIPGCVINVRPIGVLV 116
Query: 136 MIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVED 192
M D KD+KIIAV + + D ++P L +I FFE YK E K V + D
Sbjct: 117 MEDNSGKDEKIIAVPSPHLTRRYEKIHDYTDMPEITLKQIAHFFEHYKDLEPGKWVKIGD 176
Query: 193 FLPAEAAIEAIKYSMDLY 210
+ + A + I +++
Sbjct: 177 WGDEDYARKFIVEAIERA 194
>3tr4_A Inorganic pyrophosphatase; central intermediary metabolism,
hydrolase; HET: MSE; 2.00A {Coxiella burnetii}
Length = 178
Score = 239 bits (613), Expect = 2e-81
Identities = 64/181 (35%), Positives = 95/181 (52%), Gaps = 10/181 (5%)
Query: 35 AHPWHDLEIGPGAPAVCNCCKSLRQVVEI-GKGGKVKYELDKASGLIKVDRVLYSSVVYP 93
++ L N ++EI GG+VKYE DK G + VDR + +S+ YP
Sbjct: 1 SYVMTFLVSAGKGIDDFNV------IIEIPANGGEVKYEYDKELGFLTVDRFMPTSMRYP 54
Query: 94 HNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADD 153
NYGF+P T+ +D DP+DVLVL PV PG +R RA+G+M M D+ +D K++AV
Sbjct: 55 CNYGFVPSTLAQDGDPLDVLVLTPVPVQPGVLMRVRALGIMKMEDEAGEDSKVLAVPVVK 114
Query: 154 P--EFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAEAAIEAIKYSMDLY 210
+ + +K++ L I FFE YK E NK V+ + EAA + + S+ +
Sbjct: 115 ACRAYEAIQSLKDISSLLLDAISHFFERYKDLEPNKWAKVKGWEDKEAAKKEFEASIVRF 174
Query: 211 A 211
Sbjct: 175 K 175
>3d53_A Inorganic pyrophosphatase; seattle structural G center for
infectious disease, ssgcid, hydrolase, magnesium
binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Length = 173
Score = 237 bits (607), Expect = 1e-80
Identities = 65/153 (42%), Positives = 88/153 (57%), Gaps = 4/153 (2%)
Query: 60 VVEIGKGG-KVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQE 118
++EI +KYE DK SG + VDR + +++ YP NYGFIP T+ D DP+DVLV+
Sbjct: 19 IIEIPMNSGPIKYEFDKESGALFVDRFMQTTMSYPCNYGFIPDTLSNDGDPVDVLVVAHH 78
Query: 119 PVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRF 176
PV+PGS ++CRAIG++ M D+ D+KIIAV D F H K++ +L I F
Sbjct: 79 PVVPGSVIKCRAIGVLMMEDESGLDEKIIAVPTSKLDITFDHIKELDDLCEMLKKRIVHF 138
Query: 177 FEDYKKNENKK-VDVEDFLPAEAAIEAIKYSMD 208
FE YK E K V V + A IK +D
Sbjct: 139 FEHYKDLEKGKWVKVTGWGDKVKAETLIKEGID 171
>1e9g_A Ppase, inorganic pyrophosphatase; pyrophosphate phosphohydrolase,
hydrolase, manganese; HET: PO4; 1.15A {Saccharomyces
cerevisiae} SCOP: b.40.5.1 PDB: 1e6a_A* 1wgi_A 1wgj_A
2ihp_A* 8prk_A 2ik6_A 2ik2_A 2ik4_A 117e_A 2ik1_A*
2ik9_A 2ik0_A 2ik7_A 1m38_A 1ypp_A 1huk_A 1huj_A 1pyp_A
Length = 286
Score = 207 bits (529), Expect = 2e-67
Identities = 56/231 (24%), Positives = 93/231 (40%), Gaps = 39/231 (16%)
Query: 15 GPPVALNERILSSMSHRSVAAHPWHDLEIGPGAPA-VCNCCKSLRQVVEIGKGGKVKYEL 73
G L ++ + V +HD+ + + N VVEI + K E+
Sbjct: 8 GAKNTLEYKVYIEKDGKPV--SAFHDIPLYADKENNIFNM------VVEIPRWTNAKLEI 59
Query: 74 DK-----------ASGLIKVDRVLYSSVVYPHNYGFIPRT------------ICEDSDPM 110
K G ++ R + Y HNYG P+T D+DP+
Sbjct: 60 TKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWEDPNVSHPETKAVGDNDPI 119
Query: 111 DVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIK---ELPP 167
DVL + + G + +A+G+M ++D+GE D K+IA+ +DP DI+ + P
Sbjct: 120 DVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFP 179
Query: 168 HRLAEIRRFFEDYK----KNENKKVDVEDFLPAEAAIEAIKYSMDLYASYI 214
L +F YK K EN+ + + A++ IK + D + I
Sbjct: 180 GLLRATNEWFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLI 230
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.2 bits (80), Expect = 0.013
Identities = 29/238 (12%), Positives = 61/238 (25%), Gaps = 95/238 (39%)
Query: 22 ERILSSMSHRSVAAHPW-------HDLEIGPGAPAVCNCCKSL-RQVVEIGKGGKVKYEL 73
+++ + S+ + + +L R +V+ Y +
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK--LENEYALHRSIVD-------HYNI 455
Query: 74 DKAS-----GLIKVDRVLYSSVVYPH------------------NYGFIPRTICEDSDPM 110
K +D+ YS + + H ++ F+ + I DS
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGH-HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA- 513
Query: 111 DVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRL 170
+ ++ + Q + YK
Sbjct: 514 ----------------WNASGSILNTLQQ----------------LKFYKP--------- 532
Query: 171 AEIRRFFEDYKKNENKKVDVEDFLP-AEAAIEAIKYS-------MDLYASYIVESLRQ 220
++ K E + DFLP E + KY+ M + E+ +Q
Sbjct: 533 ----YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
Score = 32.5 bits (73), Expect = 0.10
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 14/75 (18%)
Query: 158 HYKDIKELPPHRLAEIRRF----FEDYKKNENKKVDVEDFLPAEAAIEAIKYSMDL---- 209
YKDI L A + F +D K+ K +++ + ++ A+
Sbjct: 17 QYKDI--LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74
Query: 210 ----YASYIVESLRQ 220
++ E LR
Sbjct: 75 QEEMVQKFVEEVLRI 89
Score = 29.4 bits (65), Expect = 1.2
Identities = 30/225 (13%), Positives = 58/225 (25%), Gaps = 75/225 (33%)
Query: 68 KVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVL--VLMQ-EP----V 120
+K E + ++ + +Y N F + P L L++ P +
Sbjct: 97 PIKTE-QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR-LQPYLKLRQALLELRPAKNVL 154
Query: 121 LPG------SFL---RCRAIGLMPMIDQG---------EKDDKIIA----VCAD-DPEFR 157
+ G +++ C + + +D + ++ + DP +
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 158 HYKDIKELPPHRLAEI----RRFF--EDYKKN-------ENKKV---------------- 188
D R+ I RR + Y+ +N K
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274
Query: 189 -DVEDFLPAEAAIEAI----------KYSMDLYASYI---VESLR 219
V DFL A L Y+ + L
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding
domain, PDI-like protein, structural genomics; NMR
{Arabidopsis thaliana} SCOP: g.49.1.3
Length = 89
Score = 28.7 bits (64), Expect = 0.51
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 36 HPWHDLEIGPGAPAVCNCCK 55
H H+LE+ C+ C+
Sbjct: 35 HEEHELELTRVQVYTCDKCE 54
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.52
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 181 KKNENKKVD--VEDFLPAEAAIEAIKYSMD 208
+K KK+ ++ + A AIK +M+
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural
genomics, JCSG, PSI, protein structure initiative; HET:
MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Length = 415
Score = 28.3 bits (62), Expect = 1.8
Identities = 12/49 (24%), Positives = 19/49 (38%)
Query: 141 EKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNENKKVD 189
EK +K + + + K I LP + RFF N+ K+
Sbjct: 198 EKIEKRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKIL 246
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 2.9
Identities = 32/186 (17%), Positives = 52/186 (27%), Gaps = 63/186 (33%)
Query: 59 QVVEIGKGGKVKYELDKASGLIK-----VDRVLYSSVVYPHNYGFIPRTICEDSDPMDVL 113
Q +G +L K S + D YGF I + +P+++
Sbjct: 1627 QEQGMGM------DLYKTSKAAQDVWNRADNHFKD------TYGFSILDIVIN-NPVNLT 1673
Query: 114 VLMQEPVLPGSFLRCRAI--GLMPMIDQGEKDDKIIA--VCADDPE------FRHYKDIK 163
+ + + I MI + D K+ + + E FR K +
Sbjct: 1674 IHFGGE-------KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL 1726
Query: 164 ELP----P----HRLAEIRRFFEDYKKNENKKVDV--------E--------DFLPAEAA 199
P A FED K D E D + E+
Sbjct: 1727 SATQFTQPALTLMEKA----AFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESL 1782
Query: 200 IEAIKY 205
+E + Y
Sbjct: 1783 VEVVFY 1788
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 25.3 bits (56), Expect = 5.6
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 171 AEIRRFFEDYKKNENKKVDVEDFLP 195
+I +DY K+ + K D E FL
Sbjct: 50 QKISEIVKDYDKDNSGKFDQETFLT 74
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury
coordination, metal transport; 1.02A {Saccharomyces
cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A
2ggp_A 3k7r_A
Length = 73
Score = 25.1 bits (55), Expect = 6.6
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 184 ENKKVDVEDFLPAEAAIEAIK 204
E + VDV LP + +E IK
Sbjct: 41 EKQLVDVYTTLPYDFILEKIK 61
>3msv_A Nuclear import adaptor, NRO1; helix repeats, heat repeats, protein
binding; 2.18A {Schizosaccharomyces pombe}
Length = 393
Score = 26.6 bits (57), Expect = 6.8
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 9/61 (14%)
Query: 157 RHYKDIKELPPH-------RLAEIRRFFEDYKKNENKKVDVEDFLPAEAAIEAIKYSMDL 209
R+ +DI LP L + FE +K + E ++ +AAIE + +D
Sbjct: 104 RNTEDISTLPKDFHAAYSSALLAVSELFEIAQKRLKETNTEESYI--DAAIERAQLGLDA 161
Query: 210 Y 210
Sbjct: 162 P 162
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 25.5 bits (57), Expect = 9.6
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 171 AEIRRFFEDYKKNENKKVDVEDFLPA 196
AE++ + + N +D +FL
Sbjct: 46 AELQDMINEVDADGNGTIDFPEFLSL 71
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A
Length = 405
Score = 26.3 bits (58), Expect = 9.9
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 163 KELPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAAIEAIKYSMDLYA 211
K LPP L E++R Y E++ ++ LP A A + D+
Sbjct: 15 KHLPPDELKEVKRIL--YGVEEDQTLE----LPTSAKDIAEQNGFDIKG 57
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.415
Gapped
Lambda K H
0.267 0.0856 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,609,706
Number of extensions: 224218
Number of successful extensions: 741
Number of sequences better than 10.0: 1
Number of HSP's gapped: 697
Number of HSP's successfully gapped: 32
Length of query: 220
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 130
Effective length of database: 4,188,903
Effective search space: 544557390
Effective search space used: 544557390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.7 bits)