RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 027710
(220 letters)
>d1twla_ b.40.5.1 (A:) Inorganic pyrophosphatase {Pyrococcus
furiosus [TaxId: 2261]}
Length = 173
Score = 193 bits (493), Expect = 8e-64
Identities = 83/175 (47%), Positives = 116/175 (66%), Gaps = 6/175 (3%)
Query: 36 HPWHDLEIGPGAPAVCNCCKSLRQVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHN 95
+P+HDLE GP P V ++EI KG + KYELDK +GL+K+DRVLYS YP +
Sbjct: 1 NPFHDLEPGPDVPEVVYA------IIEIPKGSRNKYELDKKTGLLKLDRVLYSPFFYPVD 54
Query: 96 YGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPE 155
YG IPRT ED DP D++V+M+EPV P + + R IGL MID G+KD K++AV +DP
Sbjct: 55 YGIIPRTWYEDDDPFDIMVIMREPVYPLTIIEARPIGLFKMIDSGDKDYKVLAVPVEDPY 114
Query: 156 FRHYKDIKELPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAAIEAIKYSMDLY 210
F+ +KDI ++P L EI FF+ YK+ + K++ VE + AEAA I ++++Y
Sbjct: 115 FKDWKDIDDVPKAFLDEIAHFFKRYKELQGKEIIVEGWEGAEAAKREILRAIEMY 169
>d2prda_ b.40.5.1 (A:) Inorganic pyrophosphatase {Thermus
thermophilus [TaxId: 274]}
Length = 174
Score = 178 bits (452), Expect = 1e-57
Identities = 70/175 (40%), Positives = 97/175 (55%), Gaps = 9/175 (5%)
Query: 39 HDLEIGPGAPAVCNCCKSLRQVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGF 98
L +G AP V + V+E+ +G KYE D G IK+DRVL + YP +YGF
Sbjct: 4 KSLPVGDKAPEVVHM------VIEVPRGSGNKYEYDPDLGAIKLDRVLPGAQFYPGDYGF 57
Query: 99 IPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRH 158
IP T+ ED DP+D LVL P+LPG + R +GL+ M D+ D K+I V A+D H
Sbjct: 58 IPSTLAEDGDPLDGLVLSTYPLLPGVVVEVRVVGLLLMEDEKGGDAKVIGVVAEDQRLDH 117
Query: 159 YKDIKELPPHRLAEIRRFFEDYKKNENKK---VDVEDFLPAEAAIEAIKYSMDLY 210
+DI ++P EI+ FFE YK E KK V V + +AA+E ++ + Y
Sbjct: 118 IQDIGDVPEGVKQEIQHFFETYKALEAKKGKWVKVTGWRDRKAALEEVRACIARY 172
>d1e9ga_ b.40.5.1 (A:) Inorganic pyrophosphatase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 284
Score = 174 bits (441), Expect = 2e-54
Identities = 56/231 (24%), Positives = 94/231 (40%), Gaps = 39/231 (16%)
Query: 15 GPPVALNERILSSMSHRSVAAHPWHDLEIGPGAPA-VCNCCKSLRQVVEIGKGGKVKYEL 73
G L ++ + V +HD+ + + N VVEI + K E+
Sbjct: 8 GAKNTLEYKVYIEKDGKPV--SAFHDIPLYADKENNIFNM------VVEIPRWTNAKLEI 59
Query: 74 DK-----------ASGLIKVDRVLYSSVVYPHNYGFIPRT------------ICEDSDPM 110
K G ++ R + Y HNYG P+T D+DP+
Sbjct: 60 TKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWEDPNVSHPETKAVGDNDPI 119
Query: 111 DVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKEL---PP 167
DVL + + G + +A+G+M ++D+GE D K+IA+ +DP DI+++ P
Sbjct: 120 DVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFP 179
Query: 168 HRLAEIRRFFEDYK----KNENKKVDVEDFLPAEAAIEAIKYSMDLYASYI 214
L +F YK K EN+ + + A++ IK + D + I
Sbjct: 180 GLLRATNEWFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLI 230
>d1i40a_ b.40.5.1 (A:) Inorganic pyrophosphatase {Escherichia coli
[TaxId: 562]}
Length = 175
Score = 170 bits (431), Expect = 2e-54
Identities = 67/176 (38%), Positives = 94/176 (53%), Gaps = 10/176 (5%)
Query: 39 HDLEIGPGAPAVCNCCKSLRQVVEIGKGGK-VKYELDKASGLIKVDRVLYSSVVYPHNYG 97
++ G P V+EI +KYE+DK SG + VDR + +++ YP NYG
Sbjct: 3 LNVPAGKDLPEDIYV------VIEIPANADPIKYEIDKESGALFVDRFMSTAMFYPCNYG 56
Query: 98 FIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADD--PE 155
+I T+ D DP+DVLV P+ PGS RCR +G++ M D+ +D K++AV E
Sbjct: 57 YINHTLSLDGDPVDVLVPTPYPLQPGSVTRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKE 116
Query: 156 FRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAEAAIEAIKYSMDLY 210
+ H KD+ +LP A+I FFE YK E K V VE + AEAA I S +
Sbjct: 117 YDHIKDVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEGWENAEAAKAEIVASFERA 172
>d1qeza_ b.40.5.1 (A:) Inorganic pyrophosphatase {Archaeon
Sulfolobus acidocaldarius [TaxId: 2285]}
Length = 170
Score = 164 bits (417), Expect = 2e-52
Identities = 74/174 (42%), Positives = 100/174 (57%), Gaps = 9/174 (5%)
Query: 41 LEIGPGAPAVCNCCKSLRQVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIP 100
L G AP V N +VEI +G +KYE D G+IKVDRVLY+S+ YP NYGFIP
Sbjct: 2 LSPGKNAPDVVNV------LVEIPQGSNIKYEYDDEEGVIKVDRVLYTSMNYPFNYGFIP 55
Query: 101 RTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCA--DDPEFRH 158
T+ ED DP+DVLV+ + PGS + R IG++ M D+ +D KI+AV DP F +
Sbjct: 56 GTLEEDGDPLDVLVITNYQLYPGSVIEVRPIGILYMKDEEGEDAKIVAVPKDKTDPSFSN 115
Query: 159 YKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAEAAIEAIKYSMDLYA 211
KDI +LP +I FFE YK+ E K V + + A A I+ ++ +
Sbjct: 116 IKDINDLPQATKNKIVHFFEHYKELEPGKYVKISGWGSATEAKNRIQLAIKRVS 169
>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 89
Score = 26.4 bits (58), Expect = 0.99
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 36 HPWHDLEIGPGAPAVCNCCK 55
H H+LE+ C+ C+
Sbjct: 35 HEEHELELTRVQVYTCDKCE 54
>d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA
polymerases {Sulfolobus solfataricus [TaxId: 2287]}
Length = 410
Score = 27.8 bits (61), Expect = 1.1
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 142 KDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNENKKVDVEDFL 194
K+ + I D+ + Y + L P ++ +I + D + + V D
Sbjct: 33 KETQKIYALYDNTGHKPYFLVD-LEPDKVGKIPKIVRDPSFDHIETVSKIDPY 84
>d1rh1a2 f.1.1.1 (A:313-511) Colicin B C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 199
Score = 26.7 bits (59), Expect = 1.7
Identities = 10/68 (14%), Positives = 20/68 (29%), Gaps = 5/68 (7%)
Query: 140 GEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAA 199
G+K + A++ K I+ + N + K++ D A
Sbjct: 29 GDKYKALSREIAENINNFQGKTIRSY-----DDAMSSINKLMANPSLKINATDKEAIVNA 83
Query: 200 IEAIKYSM 207
+A
Sbjct: 84 WKAFNAED 91
>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac
isoform [TaxId: 9031]}
Length = 81
Score = 24.9 bits (54), Expect = 3.2
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 153 DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNENKKVDVEDFL 194
D E +I +D KN + ++D ++FL
Sbjct: 33 DLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFL 74
>d1ej5a_ a.68.1.1 (A:) Wiscott-Aldrich syndrome protein, WASP,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 25.1 bits (55), Expect = 3.3
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 10/54 (18%)
Query: 161 DIKELPPHRLAEIRRFF------EDYKKNENKKVDVEDFLPAEAAIEAIKYSMD 208
D+ L P ++R F E + + DF+ + +EA++ M
Sbjct: 18 DVNNLDP----DLRSLFSRAGISEAQLTDAETSKLIYDFIEDQGGLEAVRQEMR 67
>d1wdcb_ a.39.1.5 (B:) Myosin Essential Chain {Bay scallop
(Aequipecten irradians) [TaxId: 31199]}
Length = 142
Score = 25.4 bits (54), Expect = 3.8
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 165 LPPHRLAEIRRFFEDYKKNENKKVDVEDFLPA 196
LP ++ E++ F + + V ED
Sbjct: 1 LPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAI 32
>d1s6ia_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD
{Soybean (Glycine max) [TaxId: 3847]}
Length = 182
Score = 25.4 bits (54), Expect = 4.5
Identities = 2/31 (6%), Positives = 12/31 (38%)
Query: 163 KELPPHRLAEIRRFFEDYKKNENKKVDVEDF 193
+ L + ++ F+ + + + ++
Sbjct: 2 ERLSEEEIGGLKELFKMIDTDNSGTITFDEL 32
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Length = 197
Score = 25.2 bits (55), Expect = 5.8
Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 5/68 (7%)
Query: 140 GEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAA 199
G+K I AD+ + K I+ + N K++ D A
Sbjct: 27 GDKYKAIAKDIADNIKNFQGKTIRSF-----DDAMASLNKITANPAMKINKADRDALVNA 81
Query: 200 IEAIKYSM 207
+ +
Sbjct: 82 WKHVDAQD 89
>d1g8ia_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 187
Score = 25.2 bits (54), Expect = 6.5
Identities = 13/70 (18%), Positives = 29/70 (41%)
Query: 141 EKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAAI 200
+++ + V A + ++ E + R F KN + K+ +++F A
Sbjct: 114 TRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGSKAD 173
Query: 201 EAIKYSMDLY 210
+I ++ LY
Sbjct: 174 PSIVQALSLY 183
>d1m45a_ a.39.1.5 (A:) Myosin Light Chain Mlc1p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 146
Score = 24.7 bits (52), Expect = 7.4
Identities = 5/29 (17%), Positives = 13/29 (44%)
Query: 166 PPHRLAEIRRFFEDYKKNENKKVDVEDFL 194
AE+ + + + N ++D + F+
Sbjct: 112 EKLTDAEVDELLKGVEVDSNGEIDYKKFI 140
>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 190
Score = 24.8 bits (53), Expect = 7.7
Identities = 11/70 (15%), Positives = 28/70 (40%)
Query: 141 EKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAAI 200
D+ + V + + E +++ F+ KNE+ + +++F
Sbjct: 117 TFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLDEFREGSKVD 176
Query: 201 EAIKYSMDLY 210
+I +++LY
Sbjct: 177 PSIIGALNLY 186
>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 77
Score = 23.3 bits (50), Expect = 9.9
Identities = 4/24 (16%), Positives = 15/24 (62%)
Query: 171 AEIRRFFEDYKKNENKKVDVEDFL 194
E++ + +N++ ++D ++F+
Sbjct: 45 EELQEMIAEADRNDDNEIDEDEFI 68
>d2obha1 a.39.1.5 (A:26-166) Calmodulin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 141
Score = 24.1 bits (51), Expect = 9.9
Identities = 14/111 (12%), Positives = 36/111 (32%), Gaps = 11/111 (9%)
Query: 92 YPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCA 151
GF P+ ++ + +F + M ++ K++ + A
Sbjct: 31 AMRALGFEPKKEEIKKMISEIDKEGTGKM---NFGDFLTVMTQKMSEKDTKEEILKAFKL 87
Query: 152 DDPEFRHYKDIKELPPHRL--------AEIRRFFEDYKKNENKKVDVEDFL 194
D + K L E++ ++ ++ + +V ++FL
Sbjct: 88 FDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFL 138
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.138 0.415
Gapped
Lambda K H
0.267 0.0582 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 881,216
Number of extensions: 42549
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 27
Length of query: 220
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 138
Effective length of database: 1,281,736
Effective search space: 176879568
Effective search space used: 176879568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.7 bits)