BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027712
(220 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LDF9|HMGB7_ARATH High mobility group B protein 7 OS=Arabidopsis thaliana GN=HMGB7
PE=1 SV=1
Length = 241
Score = 191 bits (484), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 112/177 (63%), Positives = 136/177 (76%), Gaps = 8/177 (4%)
Query: 4 SSKSNAPKPRKRVDAQSASTSSATLMRGRDGSAFARCEECNKNVPVALISMHSCSLDAKI 63
S+ SNAPK RKRV+A+++S +S TL R +DGSAFA CE CNK+V VALISMH+CSLDAKI
Sbjct: 5 STTSNAPKQRKRVEAETSSNTSTTLRRAKDGSAFALCEGCNKSVAVALISMHNCSLDAKI 64
Query: 64 KMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKD------SDSNKPKRPPTAFF 117
++NLEAQVVE AE KKKPAE+KK TS P+ KRL+K + S SNKPKRP TAFF
Sbjct: 65 RVNLEAQVVETQAE-AKKKPAEKKKTTSDGPKPKRLKKTNDEKKSSSTSNKPKRPLTAFF 123
Query: 118 LFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
+FM DFRK +K H S AK GEKWK++T+EEKK YLDKAAELKA+Y+K++
Sbjct: 124 IFMSDFRKTFKSEHNGSLA-KDAAKIGGEKWKSLTEEEKKVYLDKAAELKAEYNKSL 179
>sp|P40620|HMGL_VICFA HMG1/2-like protein OS=Vicia faba PE=2 SV=1
Length = 149
Score = 94.7 bits (234), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 70/96 (72%), Gaps = 4/96 (4%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRPP+AFF+FM DFR++YK+ HP++K V V K GE+WK++++EEK PY+D+A
Sbjct: 41 DPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRAL 100
Query: 165 ELKADYSKAMEGNGDYN-EVEDKADNEVEDKAENEV 199
+ K +Y ++ YN ++E K D E DK+++EV
Sbjct: 101 KKKEEYEITLQA---YNKKLEGKDDEEGSDKSKSEV 133
>sp|P40619|HMGL_IPONI HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1
Length = 144
Score = 90.5 bits (223), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 69/107 (64%), Gaps = 5/107 (4%)
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
K+ +K D NKPKRPP+AFF+FM+DFRK YKE HP++K V V K G+KWK +T EK
Sbjct: 24 KKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEK 83
Query: 157 KPYLDKAAELKADYSKAMEGNGDYN--EVEDKADNEVEDKAENEVED 201
P++ KA + K +Y K ++ YN + A+ E DK+ +EV D
Sbjct: 84 APFISKAEKRKQEYEKNLQA---YNKKQAAGAAEEEESDKSRSEVND 127
>sp|O49595|HMGB1_ARATH High mobility group B protein 1 OS=Arabidopsis thaliana GN=HMGB1
PE=1 SV=1
Length = 178
Score = 90.5 bits (223), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 83/125 (66%), Gaps = 8/125 (6%)
Query: 80 KKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTG 139
+K PAE KPT E R ++ KKD NKPKR P+AFF+F++DFR +K+ +P+ K V+
Sbjct: 28 RKAPAE--KPTKRETRKEKKAKKDP--NKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSA 83
Query: 140 VAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENEV 199
V K G+KWK+M+ EK PY +KAA+ KA+Y K M+ YN+ ++ +E E K+ +E+
Sbjct: 84 VGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDA---YNKNLEEGSDESE-KSRSEI 139
Query: 200 EDKAE 204
D+ E
Sbjct: 140 NDEDE 144
>sp|O49597|HMGB5_ARATH High mobility group B protein 5 OS=Arabidopsis thaliana GN=HMGB5
PE=2 SV=1
Length = 125
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 58/81 (71%)
Query: 95 RAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDE 154
R ++ KK D N+PK+PP+ FF+F+DDFRKE+ A+PD+K V V + AG+KWK MT+E
Sbjct: 20 RGNKVGKKTKDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEE 79
Query: 155 EKKPYLDKAAELKADYSKAME 175
E+ P++ K+ K +Y+ M+
Sbjct: 80 ERAPFVAKSQSKKTEYAVTMQ 100
>sp|P93047|HMGB3_ARATH High mobility group B protein 3 OS=Arabidopsis thaliana GN=HMGB3
PE=1 SV=1
Length = 141
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 64/97 (65%), Gaps = 5/97 (5%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRP +AFF+FM+DFR YKE HP +K V V K GEKWK+++D EK PY+ KA
Sbjct: 31 DPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKAD 90
Query: 165 ELKADYSKAMEGNGDYNEV--EDKADNEVEDKAENEV 199
+ K +Y K M+ YN+ E ++E DK+ +EV
Sbjct: 91 KRKVEYEKNMKA---YNKKLEEGPKEDEESDKSVSEV 124
>sp|P27347|MNB1B_MAIZE DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1
Length = 157
Score = 88.2 bits (217), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 65/95 (68%), Gaps = 3/95 (3%)
Query: 93 EPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMT 152
+P R K D NKPKR P+AFF+FM++FRKE+KE +P +K V V K AG++WK+++
Sbjct: 25 KPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLS 84
Query: 153 DEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKA 187
+ +K PY+ KA +LK +Y+KA+ YN+ E A
Sbjct: 85 ESDKAPYVAKANKLKLEYNKAIAA---YNKGESTA 116
>sp|P40621|HMGL_WHEAT HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1
Length = 161
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 59/81 (72%), Gaps = 3/81 (3%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKR P+AFF+FM +FR+E+K+ +P +K V V K AGE+WK++++ EK PY+ KA
Sbjct: 38 DPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKAN 97
Query: 165 ELKADYSKAMEGNGDYNEVED 185
+LK +Y+KA+ YN+ E
Sbjct: 98 KLKGEYNKAIAA---YNKGES 115
>sp|P26585|HMGL_SOYBN HMG1/2-like protein OS=Glycine max PE=2 SV=1
Length = 152
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 52/70 (74%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRPP+AFF+FM++FRK + + HP++K V+ V K AG KWK M+D EK PY+ K+
Sbjct: 40 DPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSE 99
Query: 165 ELKADYSKAM 174
+ K +Y K M
Sbjct: 100 KRKVEYEKNM 109
>sp|Q42344|HMGB4_ARATH High mobility group B protein 4 OS=Arabidopsis thaliana GN=HMGB4
PE=1 SV=1
Length = 138
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 61/91 (67%), Gaps = 5/91 (5%)
Query: 90 TSTEPRAKRLRKKDS-----DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
TST+ R K +K D N+PKRPP+AFF+F++DFRKE+ A+P++K V V K A
Sbjct: 11 TSTDQRLKTRGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAA 70
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSKAME 175
G +WK MTDE+K PY+ KA K +Y K ++
Sbjct: 71 GARWKAMTDEDKAPYVAKAESRKTEYIKNVQ 101
>sp|O49596|HMGB2_ARATH High mobility group B protein 2 OS=Arabidopsis thaliana GN=HMGB2
PE=1 SV=1
Length = 144
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 72/115 (62%), Gaps = 8/115 (6%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGE 146
KKP R K K D NKPKRP +AFF+FM+DFR+ +K+ +P +K V V K AG+
Sbjct: 19 KKPAKGAGRGKAAAK---DPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGD 75
Query: 147 KWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEV--EDKADNEVEDKAENEV 199
KWK+++D EK PY+ KA + K +Y K ++ YN+ E ++E DK+ +EV
Sbjct: 76 KWKSLSDSEKAPYVAKAEKRKVEYEKNIKA---YNKKLEEGPKEDEESDKSVSEV 127
>sp|O64702|HMG14_ARATH High mobility group B protein 14 OS=Arabidopsis thaliana GN=HMGB14
PE=2 SV=2
Length = 151
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 46/66 (69%)
Query: 109 PKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKA 168
PK+P TAFF F+DDFRK+Y+E +PD K + + K GEKWK MT EEK Y D A E +
Sbjct: 63 PKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTMTYEEKVKYYDIATEKRE 122
Query: 169 DYSKAM 174
++ +AM
Sbjct: 123 EFHRAM 128
>sp|Q32L31|HMGB3_BOVIN High mobility group protein B3 OS=Bos taurus GN=HMGB3 PE=2 SV=2
Length = 200
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K A+P + VAK+ GE W N++D EK+PY++KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANPGI-SIGDVAKKLGEMWNNLSDSEKQPYINKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>sp|O54879|HMGB3_MOUSE High mobility group protein B3 OS=Mus musculus GN=Hmgb3 PE=2 SV=3
Length = 200
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N++D EK+PY+ KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDNEKQPYVTKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>sp|O15347|HMGB3_HUMAN High mobility group protein B3 OS=Homo sapiens GN=HMGB3 PE=1 SV=4
Length = 200
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N+ D EK+PY+ KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>sp|P40618|HMGB3_CHICK High mobility group protein B3 OS=Gallus gallus GN=HMGB3 PE=2 SV=2
Length = 202
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+AFFLF +FR + K +P + VAK+ GE W N++D EK+PY +KAA
Sbjct: 89 DPNAPKRPPSAFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>sp|P36194|HMGB1_CHICK High mobility group protein B1 OS=Gallus gallus GN=HMGB1 PE=2 SV=2
Length = 201
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N++D EK+PY +KAA
Sbjct: 88 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAA 146
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 147 KLKEKYEK 154
>sp|P0C6E5|HMG3M_HUMAN Putative high mobility group protein B3-like protein OS=Homo
sapiens PE=5 SV=1
Length = 187
Score = 67.0 bits (162), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 102 KDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLD 161
K D N PKRPP+ FFLF +F + K +P + VAK+ GE WKN+ D EK+PY+
Sbjct: 85 KKKDPNAPKRPPSGFFLFCSEFCPKSKSTNPGIP-IGDVAKKLGEMWKNLNDSEKQPYIT 143
Query: 162 KAAELKADYSK 172
+AA+LK Y K
Sbjct: 144 QAAKLKEKYEK 154
>sp|P07746|HMGT_ONCMY High mobility group-T protein OS=Oncorhynchus mykiss PE=2 SV=2
Length = 204
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 72/139 (51%), Gaps = 7/139 (5%)
Query: 38 ARCEECNKNVPVALISMH----SCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTE 93
R EE K P A ++ CS K E E A+++K + ER+ +
Sbjct: 21 TRREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDLAKLDKVR-YEREMRSYIP 79
Query: 94 PRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTD 153
P+ ++ +K+ D N PKRP +AFF+F DFR + K P + VAK+ GEKW N+T
Sbjct: 80 PKGEK-KKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGL-SIGDVAKKLGEKWNNLTA 137
Query: 154 EEKKPYLDKAAELKADYSK 172
E+K PY KA+ LK Y K
Sbjct: 138 EDKVPYEKKASRLKEKYEK 156
Score = 35.4 bits (80), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HP+ S + +K+ E+WK M+ +EK + D A
Sbjct: 4 DPRKPRGKMSSYAYFVQTRREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDLA 63
Query: 164 AELKADYSKAM 174
K Y + M
Sbjct: 64 KLDKVRYEREM 74
>sp|Q941D1|HMG12_ARATH High mobility group B protein 12 OS=Arabidopsis thaliana GN=HMGB12
PE=2 SV=1
Length = 149
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 77/161 (47%), Gaps = 28/161 (17%)
Query: 33 DGSAFARCEE--CNKNVPVALISMHSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPT 90
D S FARCE+ CNK +PV L+ MH C + + A R T
Sbjct: 8 DSSIFARCEDVDCNKKIPVELVRMHICY------------------AMFHRTLAARGFGT 49
Query: 91 STEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKN 150
T+ + K KK K T F +FM+ FRK ++ + + G +K E WK+
Sbjct: 50 QTQAKKKPTNKK-----KSTTSLTDFAVFMNHFRKSFRTDYNGALVKEG-SKIGWEMWKS 103
Query: 151 MTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEV 191
MT++EKK YLDKAA+ + + +E D + +D DNEV
Sbjct: 104 MTEDEKKDYLDKAADEEDEDEDTVEEQAD--DSDDAEDNEV 142
>sp|Q04678|SSRP1_CHICK FACT complex subunit SSRP1 OS=Gallus gallus GN=SSRP1 PE=2 SV=2
Length = 706
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 62/98 (63%), Gaps = 3/98 (3%)
Query: 79 NKKKPAERKKPT-STEPRAKRLR-KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKG 136
+KKPA++ K +PR K++ KK D N PKRP +A+ L+++ R++ K HP
Sbjct: 513 GEKKPAKKAKIVKDRKPRKKQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHP-GIS 571
Query: 137 VTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
+T ++K+AGE WK M+ E+K+ + KA + K DY KAM
Sbjct: 572 ITDLSKKAGELWKAMSKEKKEEWDRKAEDAKRDYEKAM 609
>sp|P07156|HMGB1_CRIGR High mobility group protein B1 (Fragment) OS=Cricetulus griseus
GN=HMGB1 PE=1 SV=1
Length = 180
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 37 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKL 94
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 95 GEMWNNTAADDKQPYEKKAAKLKEKYEK 122
>sp|P63159|HMGB1_RAT High mobility group protein B1 OS=Rattus norvegicus GN=Hmgb1 PE=1
SV=2
Length = 215
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAM 174
A KA Y + M
Sbjct: 64 AKADKARYEREM 75
>sp|A9RA84|HMGB1_PAPAN High mobility group protein B1 OS=Papio anubis GN=HMGB1 PE=3 SV=1
Length = 215
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAM 174
A KA Y + M
Sbjct: 64 AKADKARYEREM 75
>sp|P63158|HMGB1_MOUSE High mobility group protein B1 OS=Mus musculus GN=Hmgb1 PE=1 SV=2
Length = 215
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAM 174
A KA Y + M
Sbjct: 64 AKADKARYEREM 75
>sp|Q4R844|HMGB1_MACFA High mobility group protein B1 OS=Macaca fascicularis GN=HMGB1 PE=2
SV=3
Length = 215
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAM 174
A KA Y + M
Sbjct: 64 AKADKARYEREM 75
>sp|P09429|HMGB1_HUMAN High mobility group protein B1 OS=Homo sapiens GN=HMGB1 PE=1 SV=3
Length = 215
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAM 174
A KA Y + M
Sbjct: 64 AKADKARYEREM 75
>sp|Q08IE6|HMGB1_HORSE High mobility group protein B1 OS=Equus caballus GN=HMGB1 PE=2 SV=3
Length = 215
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAM 174
A KA Y + M
Sbjct: 64 AKADKARYEREM 75
>sp|Q6YKA4|HMGB1_CANFA High mobility group protein B1 OS=Canis familiaris GN=HMGB1 PE=2
SV=3
Length = 215
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAM 174
A KA Y + M
Sbjct: 64 AKADKARYEREM 75
>sp|B1MTB0|HMGB1_CALMO High mobility group protein B1 OS=Callicebus moloch GN=HMGB1 PE=3
SV=1
Length = 215
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAM 174
A KA Y + M
Sbjct: 64 AKADKARYEREM 75
>sp|B0CM99|HMGB1_CALJA High mobility group protein B1 OS=Callithrix jacchus GN=HMGB1 PE=3
SV=1
Length = 215
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAM 174
A KA Y + M
Sbjct: 64 AKADKARYEREM 75
>sp|P52925|HMGB2_RAT High mobility group protein B2 OS=Rattus norvegicus GN=Hmgb2 PE=2
SV=2
Length = 210
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 167 KADYSK 172
K Y K
Sbjct: 152 KEKYEK 157
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D
Sbjct: 4 GDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDL 63
Query: 163 AAELKADYSKAM 174
A KA Y + M
Sbjct: 64 AKSDKARYDREM 75
>sp|P26584|HMGB2_CHICK High mobility group protein B2 OS=Gallus gallus GN=HMGB2 PE=2 SV=2
Length = 207
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+AFFLF + R + K HP + AK+ GE W ++K+PY KAA
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHP-GLSIGDTAKKLGEMWSEQLAKDKQPYEQKAA 149
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 150 KLKEKYEK 157
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D NKP+ +++ F+ R+E+K+ HPDS +++ E+WK M+ +EK + +
Sbjct: 4 GDPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEM 63
Query: 163 AAELKADYSKAM 174
A KA Y + M
Sbjct: 64 AKGDKARYDREM 75
>sp|P26583|HMGB2_HUMAN High mobility group protein B2 OS=Homo sapiens GN=HMGB2 PE=1 SV=2
Length = 209
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 167 KADYSK 172
K Y K
Sbjct: 152 KEKYEK 157
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D
Sbjct: 4 GDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDM 63
Query: 163 AAELKADYSKAM 174
A KA Y + M
Sbjct: 64 AKSDKARYDREM 75
>sp|P40673|HMGB2_BOVIN High mobility group protein B2 OS=Bos taurus GN=HMGB2 PE=1 SV=3
Length = 209
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 167 KADYSK 172
K Y K
Sbjct: 152 KEKYEK 157
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D
Sbjct: 4 GDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDM 63
Query: 163 AAELKADYSKAM 174
A KA Y + M
Sbjct: 64 AKSDKARYDREM 75
>sp|P17741|HMGB2_PIG High mobility group protein B2 OS=Sus scrofa GN=HMGB2 PE=1 SV=2
Length = 210
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 167 KADYSK 172
K Y K
Sbjct: 152 KEKYEK 157
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D
Sbjct: 4 GDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDM 63
Query: 163 AAELKADYSKAM 174
A KA Y + M
Sbjct: 64 AKSDKARYDREM 75
>sp|Q08945|SSRP1_HUMAN FACT complex subunit SSRP1 OS=Homo sapiens GN=SSRP1 PE=1 SV=1
Length = 709
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 9/89 (10%)
Query: 86 RKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAG 145
RKKP KK D N PKRP +A+ L+++ R++ K HP +T ++K+AG
Sbjct: 532 RKKPVEV--------KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAG 582
Query: 146 EKWKNMTDEEKKPYLDKAAELKADYSKAM 174
E WK M+ E+K+ + KA + + DY KAM
Sbjct: 583 EIWKGMSKEKKEEWDRKAEDARRDYEKAM 611
>sp|Q4WY33|NHP6_ASPFU Non-histone chromosomal protein 6 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=nhp6
PE=3 SV=1
Length = 104
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 61/106 (57%), Gaps = 8/106 (7%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVT--GVAKEA 144
K+ TST + KR+ +K D N PKR +A+ F ++ R + +E +P G++ V K
Sbjct: 3 KEKTSTRTKTKRVERKKKDPNAPKRGLSAYMFFANENRDKVREENP---GISFGQVGKML 59
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNE 190
GE+WK ++D E++PY +KAA AD + + YN +D+ + E
Sbjct: 60 GERWKALSDSERRPYEEKAA---ADKKRYEDEKASYNAAQDEDEEE 102
>sp|Q08943|SSRP1_MOUSE FACT complex subunit SSRP1 OS=Mus musculus GN=Ssrp1 PE=1 SV=2
Length = 708
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 5/83 (6%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
KK D N PKRP +A+ L+++ R++ K HP +T ++K+AGE WK M+ E+K+ +
Sbjct: 539 KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWD 597
Query: 161 DKAAELKADYSKAME----GNGD 179
KA + + +Y KAM+ G GD
Sbjct: 598 RKAEDARREYEKAMKEYEGGRGD 620
>sp|Q8WW32|HMGB4_HUMAN High mobility group protein B4 OS=Homo sapiens GN=HMGB4 PE=2 SV=2
Length = 186
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D +P+RPP++F LF D + K +P+ V VAK G+ W TD EK PY + A
Sbjct: 89 DPQEPRRPPSSFLLFCQDHYAQLKRENPNW-SVVQVAKATGKMWSTATDLEKHPYEQRVA 147
Query: 165 ELKADYSKAME 175
L+A Y + +E
Sbjct: 148 LLRAKYFEELE 158
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 108 KPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
KPK +++ F+ ++R ++KE P++ G +++ EKW++++ EK Y A
Sbjct: 8 KPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 67
Query: 167 KADYSKAM 174
KA Y + M
Sbjct: 68 KARYQEEM 75
>sp|P10103|HMGB1_BOVIN High mobility group protein B1 OS=Bos taurus GN=HMGB1 PE=1 SV=3
Length = 215
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 70/136 (51%), Gaps = 7/136 (5%)
Query: 41 EECNKNVPVALISMH----SCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRA 96
EE K P A ++ CS K E E A+ +K + ER+ T P+
Sbjct: 25 EEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAR-YEREMKTYIPPKG 83
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
+ +KK D N PKRPP+AFFLF ++R + K HP + VAK+ GE W N ++K
Sbjct: 84 E-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDK 141
Query: 157 KPYLDKAAELKADYSK 172
+PY KAA+LK Y K
Sbjct: 142 QPYEKKAAKLKEKYEK 157
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAM 174
A KA Y + M
Sbjct: 64 AKADKARYEREM 75
>sp|Q9W602|SSRP1_XENLA FACT complex subunit SSRP1 OS=Xenopus laevis GN=ssrp1 PE=1 SV=1
Length = 693
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 94 PRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTD 153
PR K KK D PKRP +A+ L+++ R++ K +P +T ++K+AGE WKNM+
Sbjct: 526 PRKKPEAKKTKDPGAPKRPMSAYMLWLNASREKIKSENP-GISITDLSKKAGEIWKNMSR 584
Query: 154 EEKKPYLDKAAELKADYSKAM 174
++K+ + +A E K DY KAM
Sbjct: 585 DKKEEWDRRAEEAKRDYEKAM 605
>sp|P12682|HMGB1_PIG High mobility group protein B1 OS=Sus scrofa GN=HMGB1 PE=2 SV=3
Length = 215
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 69/136 (50%), Gaps = 7/136 (5%)
Query: 41 EECNKNVPVALISMH----SCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRA 96
EE K P A ++ CS K E E A+ +K + ER+ T P+
Sbjct: 25 EEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAR-YEREMKTYIPPKG 83
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
+ +KK D N PKRPP+AFFLF ++R + K HP + VAK+ GE W N ++K
Sbjct: 84 E-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDK 141
Query: 157 KPYLDKAAELKADYSK 172
PY KAA+LK Y K
Sbjct: 142 HPYEKKAAKLKEKYEK 157
Score = 39.7 bits (91), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAM 174
A KA Y + M
Sbjct: 64 AKADKARYEREM 75
>sp|P30681|HMGB2_MOUSE High mobility group protein B2 OS=Mus musculus GN=Hmgb2 PE=1 SV=3
Length = 210
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 93 NAPKRPPSAFFLFCSENRPKIKIEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 167 KADYSK 172
K Y K
Sbjct: 152 KEKYEK 157
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D
Sbjct: 4 GDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDL 63
Query: 163 AAELKADYSKAM 174
A KA Y + M
Sbjct: 64 AKSDKARYDREM 75
>sp|Q32L34|HMGB4_BOVIN High mobility group protein B4 OS=Bos taurus GN=HMGB4 PE=2 SV=1
Length = 194
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D + P+RPP++F LF D + K +P S V VAK +G+ W TD +K+PY +AA
Sbjct: 89 DPHAPRRPPSSFLLFCQDHYAQLKSENP-SWSVVQVAKASGKMWSAKTDVDKQPYEQRAA 147
Query: 165 ELKADY 170
L+A Y
Sbjct: 148 LLRAKY 153
Score = 37.4 bits (85), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KPK +++ F+ ++R ++KE P++ G +++ EKW++++ EK Y A
Sbjct: 5 DQLKPKANVSSYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEALA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KLDKARYQEEM 75
>sp|Q9T012|HMG13_ARATH High mobility group B protein 13 OS=Arabidopsis thaliana GN=HMGB13
PE=2 SV=1
Length = 446
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPK+P +++FLF D RK E HP T V KW + +EEK+ Y KAA
Sbjct: 368 DPNKPKKPTSSYFLFCKDARKSVLEEHPGINNST-VTAHISLKWMELGEEEKQVYNSKAA 426
Query: 165 ELKADYSKAMEGNGDYN 181
EL Y K +E +YN
Sbjct: 427 ELMEAYKKEVE---EYN 440
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D KPK+P +A+ ++ ++ R K ++K V VAK AGE+WKN+++E+K PY A
Sbjct: 242 DPLKPKQPISAYLIYANERRAALK---GENKSVIEVAKMAGEEWKNLSEEKKAPYDQMAK 298
Query: 165 ELKADYSKAMEG 176
+ K Y + MEG
Sbjct: 299 KNKEIYLQEMEG 310
Score = 37.0 bits (84), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHP--DSKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D + KRP T + L+ D E K+ +P D K + + G KWK ++ EEKKPY +K
Sbjct: 125 DCAETKRPSTPYILWCKDNWNEVKKQNPEADFKETSNIL---GAKWKGISAEEKKPYEEK 181
>sp|Q04931|SSRP1_RAT FACT complex subunit SSRP1 OS=Rattus norvegicus GN=Ssrp1 PE=1 SV=2
Length = 709
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 50/79 (63%), Gaps = 5/79 (6%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRP +A+ L+++ R++ K HP +T ++K+AGE WK M+ E+K+ + KA
Sbjct: 543 DPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAE 601
Query: 165 ELKADYSKAME----GNGD 179
+ + +Y KAM+ G GD
Sbjct: 602 DARREYEKAMKEYEGGRGD 620
>sp|P40622|HMG1A_CHITE Mobility group protein 1A OS=Chironomus tentans GN=HMG1A PE=3 SV=1
Length = 114
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 106 SNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAE 165
+ KPKRP +A+ L+++ R+ K+ +PD K VT +AK+ GE W+ M D K + KAA+
Sbjct: 2 AEKPKRPLSAYMLWLNSARESIKKENPDFK-VTEIAKKGGELWRGMKD--KSEWEAKAAK 58
Query: 166 LKADYSKAM 174
+K +Y KAM
Sbjct: 59 MKEEYEKAM 67
>sp|B2RPK0|HGB1A_HUMAN Putative high mobility group protein B1-like 1 OS=Homo sapiens
GN=HMGB1P1 PE=5 SV=1
Length = 211
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++ + K HP + VAK+
Sbjct: 72 ERQMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYHPKIKGEHP-GLSIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKP 158
GE W N ++K+P
Sbjct: 130 GEMWNNTAADDKQP 143
Score = 33.9 bits (76), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ H D S + + + E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHSDASVNFSEFSNKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAM 174
A K Y + M
Sbjct: 64 AKADKTHYERQM 75
>sp|Q9SUP7|HMGB6_ARATH High mobility group B protein 6 OS=Arabidopsis thaliana GN=HMGB6
PE=2 SV=1
Length = 456
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPK+P +++FLF D RK+ E P + T A KWK +++EEK+ Y KAA
Sbjct: 375 DPNKPKKPASSYFLFSKDERKKLTEERPGTNNATVTAL-ISLKWKELSEEEKQVYNGKAA 433
Query: 165 ELKADYSKAMEGNGDYN 181
+L Y K +E YN
Sbjct: 434 KLMEAYKKEVEA---YN 447
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D KPK P +AF ++ ++ R +E ++K V VAK GE+WKN++D++K PY A
Sbjct: 251 DPLKPKHPVSAFLVYANERRAALRE---ENKSVVEVAKITGEEWKNLSDKKKAPYEKVAK 307
Query: 165 ELKADYSKAME 175
+ K Y +AME
Sbjct: 308 KNKETYLQAME 318
Score = 34.7 bits (78), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Query: 110 KRPPTAFFLFMDDFRKEYKEAHP--DSKGVTGVAKEAGEKWKNMTDEEKKPY 159
KRP +++ L+ D E K+ +P D K + + G KWK+++ E+KKPY
Sbjct: 139 KRPSSSYVLWCKDQWTEVKKENPEADFKETSNIL---GAKWKSLSAEDKKPY 187
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.306 0.124 0.340
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,269,504
Number of Sequences: 539616
Number of extensions: 3652492
Number of successful extensions: 22835
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 763
Number of HSP's that attempted gapping in prelim test: 19917
Number of HSP's gapped (non-prelim): 2646
length of query: 220
length of database: 191,569,459
effective HSP length: 113
effective length of query: 107
effective length of database: 130,592,851
effective search space: 13973435057
effective search space used: 13973435057
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 59 (27.3 bits)