Query 027712
Match_columns 220
No_of_seqs 214 out of 1266
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 14:03:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027712.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027712hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00199 high mobility group p 99.9 1.6E-21 3.5E-26 146.1 8.4 80 99-181 13-93 (94)
2 cd01389 MATA_HMG-box MATA_HMG- 99.8 5.6E-19 1.2E-23 127.3 8.6 69 108-177 1-69 (77)
3 cd01388 SOX-TCF_HMG-box SOX-TC 99.8 1.3E-18 2.8E-23 123.9 8.6 68 109-177 2-69 (72)
4 cd01390 HMGB-UBF_HMG-box HMGB- 99.8 4.1E-18 8.9E-23 118.2 8.2 65 109-174 1-65 (66)
5 PF00505 HMG_box: HMG (high mo 99.7 4.7E-18 1E-22 119.0 6.6 69 109-181 1-69 (69)
6 smart00398 HMG high mobility g 99.7 1.6E-17 3.4E-22 116.0 8.4 70 108-181 1-70 (70)
7 PF09011 HMG_box_2: HMG-box do 99.7 1.5E-17 3.3E-22 118.7 7.2 72 106-181 1-73 (73)
8 COG5648 NHP6B Chromatin-associ 99.7 5.2E-17 1.1E-21 136.0 8.1 86 97-186 59-144 (211)
9 cd00084 HMG-box High Mobility 99.7 3.2E-16 7E-21 108.1 8.2 65 109-174 1-65 (66)
10 KOG0381 HMG box-containing pro 99.6 9.7E-16 2.1E-20 114.3 8.1 75 105-183 17-94 (96)
11 KOG0527 HMG-box transcription 99.6 1.1E-15 2.4E-20 137.4 7.9 80 102-183 56-135 (331)
12 COG5648 NHP6B Chromatin-associ 99.5 1E-13 2.3E-18 116.2 7.3 136 23-174 66-208 (211)
13 KOG0526 Nucleosome-binding fac 99.5 7.6E-14 1.7E-18 130.1 6.0 77 100-184 527-603 (615)
14 KOG3248 Transcription factor T 99.1 1.6E-10 3.6E-15 102.9 6.2 87 106-193 189-275 (421)
15 KOG4715 SWI/SNF-related matrix 99.0 1.1E-09 2.3E-14 97.0 6.1 78 102-183 58-135 (410)
16 KOG0528 HMG-box transcription 98.8 1.4E-09 3E-14 100.9 3.1 77 103-183 320-396 (511)
17 PTZ00199 high mobility group p 98.8 2.8E-09 6.2E-14 79.8 3.8 66 23-91 18-92 (94)
18 PF09011 HMG_box_2: HMG-box do 98.5 2.5E-08 5.5E-13 70.9 0.4 63 26-91 2-72 (73)
19 cd01389 MATA_HMG-box MATA_HMG- 98.3 8.6E-07 1.9E-11 63.5 4.3 57 35-92 7-70 (77)
20 cd01388 SOX-TCF_HMG-box SOX-TC 98.3 1.1E-06 2.5E-11 62.1 4.2 56 35-91 7-69 (72)
21 PF14887 HMG_box_5: HMG (high 98.1 1.8E-05 3.9E-10 56.8 8.0 75 108-187 3-77 (85)
22 cd01390 HMGB-UBF_HMG-box HMGB- 98.1 4.6E-06 9.9E-11 57.2 4.0 53 35-88 6-65 (66)
23 KOG2746 HMG-box transcription 98.0 3.6E-06 7.8E-11 81.2 3.9 70 103-173 176-247 (683)
24 PF00505 HMG_box: HMG (high mo 97.9 4.9E-06 1.1E-10 57.7 1.9 57 34-91 5-68 (69)
25 KOG0526 Nucleosome-binding fac 97.9 8E-06 1.7E-10 77.1 3.1 65 22-92 530-600 (615)
26 smart00398 HMG high mobility g 97.9 1.7E-05 3.6E-10 54.7 3.7 56 35-91 7-69 (70)
27 cd00084 HMG-box High Mobility 97.7 3.1E-05 6.8E-10 52.7 3.5 53 35-88 6-65 (66)
28 PF06382 DUF1074: Protein of u 97.1 0.00064 1.4E-08 56.2 4.7 48 113-165 83-130 (183)
29 KOG0381 HMG box-containing pro 97.1 0.0004 8.6E-09 51.3 3.0 62 27-91 22-91 (96)
30 PF04690 YABBY: YABBY protein; 96.7 0.0032 7E-08 52.0 5.1 48 104-152 117-164 (170)
31 KOG0527 HMG-box transcription 96.7 0.0015 3.3E-08 59.3 3.4 66 24-92 59-131 (331)
32 PF08073 CHDNT: CHDNT (NUC034) 94.4 0.052 1.1E-06 36.7 3.2 40 113-153 13-52 (55)
33 KOG0528 HMG-box transcription 93.4 0.065 1.4E-06 50.7 3.0 60 13-80 317-383 (511)
34 PF14887 HMG_box_5: HMG (high 92.9 0.062 1.3E-06 38.8 1.6 39 54-93 34-72 (85)
35 KOG4715 SWI/SNF-related matrix 89.4 0.2 4.2E-06 45.3 1.6 52 41-93 81-134 (410)
36 PF06244 DUF1014: Protein of u 87.5 0.69 1.5E-05 36.3 3.4 47 107-154 70-117 (122)
37 PF04769 MAT_Alpha1: Mating-ty 86.4 1.1 2.3E-05 38.2 4.3 44 104-152 39-82 (201)
38 KOG3248 Transcription factor T 80.8 1.3 2.8E-05 40.5 2.6 26 55-80 224-249 (421)
39 TIGR03481 HpnM hopanoid biosyn 77.0 4.6 0.0001 34.0 4.7 45 136-183 65-111 (198)
40 KOG3223 Uncharacterized conser 74.9 2.2 4.7E-05 36.1 2.1 54 107-164 162-216 (221)
41 PRK15117 ABC transporter perip 73.2 7.2 0.00016 33.2 5.0 49 131-183 65-115 (211)
42 PF05494 Tol_Tol_Ttg2: Toluene 48.2 20 0.00043 28.9 3.1 47 132-182 36-84 (170)
43 PF12881 NUT_N: NUT protein N 38.7 68 0.0015 29.2 5.2 53 113-166 229-281 (328)
44 PF06382 DUF1074: Protein of u 31.7 48 0.001 27.8 2.8 25 55-79 107-131 (183)
45 PF01352 KRAB: KRAB box; Inte 31.2 40 0.00086 21.1 1.8 28 137-164 3-31 (41)
46 KOG3838 Mannose lectin ERGIC-5 29.6 53 0.0011 31.0 3.0 37 150-189 268-304 (497)
47 COG2854 Ttg2D ABC-type transpo 27.1 79 0.0017 27.0 3.5 43 141-186 77-120 (202)
48 PF13875 DUF4202: Domain of un 27.0 1.1E+02 0.0023 25.8 4.2 40 114-157 130-169 (185)
49 PF11304 DUF3106: Protein of u 22.9 1.3E+02 0.0027 22.8 3.6 25 139-163 11-35 (107)
50 PRK10236 hypothetical protein; 21.6 91 0.002 27.2 2.9 48 115-162 88-140 (237)
51 cd07081 ALDH_F20_ACDH_EutE-lik 20.6 1.8E+02 0.0039 27.4 5.0 37 138-174 5-41 (439)
No 1
>PTZ00199 high mobility group protein; Provisional
Probab=99.85 E-value=1.6e-21 Score=146.13 Aligned_cols=80 Identities=36% Similarity=0.647 Sum_probs=74.6
Q ss_pred hhccCCCCCCCCCCCCchhhHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccC
Q 027712 99 LRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGN 177 (220)
Q Consensus 99 ~kk~~kd~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~-~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~ 177 (220)
+++..+||+.||||+||||+||+++|..|..+||++. ++.+|+++||++|++||+++|.+|.++|..++.+|..+|
T Consensus 13 ~~k~~kdp~~PKrP~sAY~~F~~~~R~~i~~~~P~~~~~~~evsk~ige~Wk~ls~eeK~~y~~~A~~dk~rY~~e~--- 89 (94)
T PTZ00199 13 NKRKKKDPNAPKRALSAYMFFAKEKRAEIIAENPELAKDVAAVGKMVGEAWNKLSEEEKAPYEKKAQEDKVRYEKEK--- 89 (94)
T ss_pred cCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCcCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH---
Confidence 4556799999999999999999999999999999983 378999999999999999999999999999999999999
Q ss_pred cCcc
Q 027712 178 GDYN 181 (220)
Q Consensus 178 ~~y~ 181 (220)
..|+
T Consensus 90 ~~Y~ 93 (94)
T PTZ00199 90 AEYA 93 (94)
T ss_pred HHHh
Confidence 8885
No 2
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=99.79 E-value=5.6e-19 Score=127.29 Aligned_cols=69 Identities=25% Similarity=0.384 Sum_probs=66.2
Q ss_pred CCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccC
Q 027712 108 KPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGN 177 (220)
Q Consensus 108 ~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~ 177 (220)
+||||+||||||+++.|..++..||++ ++.+|+++||++|+.||+++|++|.++|+.++++|..++|+|
T Consensus 1 ~~kRP~naf~lf~~~~r~~~~~~~p~~-~~~eisk~~g~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Y 69 (77)
T cd01389 1 KIPRPRNAFILYRQDKHAQLKTENPGL-TNNEISRIIGRMWRSESPEVKAYYKELAEEEKERHAREYPDY 69 (77)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 489999999999999999999999999 899999999999999999999999999999999999999555
No 3
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=99.77 E-value=1.3e-18 Score=123.93 Aligned_cols=68 Identities=32% Similarity=0.543 Sum_probs=65.4
Q ss_pred CCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccC
Q 027712 109 PKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGN 177 (220)
Q Consensus 109 PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~ 177 (220)
.|||+||||+|+++.|..++..||++ ++.+|+++||++|+.||+++|++|.++|..++++|.+++|+|
T Consensus 2 iKrP~naf~~F~~~~r~~~~~~~p~~-~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~p~y 69 (72)
T cd01388 2 IKRPMNAFMLFSKRHRRKVLQEYPLK-ENRAISKILGDRWKALSNEEKQPYYEEAKKLKELHMKLYPDY 69 (72)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHCcCC
Confidence 58999999999999999999999999 899999999999999999999999999999999999999555
No 4
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=99.75 E-value=4.1e-18 Score=118.16 Aligned_cols=65 Identities=49% Similarity=0.826 Sum_probs=63.7
Q ss_pred CCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHh
Q 027712 109 PKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174 (220)
Q Consensus 109 PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~ 174 (220)
||+|+|||++|++++|..++..||++ ++.+|++.||++|++||+++|.+|.+.|.+++.+|..+|
T Consensus 1 Pkrp~saf~~f~~~~r~~~~~~~p~~-~~~~i~~~~~~~W~~ls~~eK~~y~~~a~~~~~~y~~e~ 65 (66)
T cd01390 1 PKRPLSAYFLFSQEQRPKLKKENPDA-SVTEVTKILGEKWKELSEEEKKKYEEKAEKDKERYEKEM 65 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999998 899999999999999999999999999999999999987
No 5
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=99.74 E-value=4.7e-18 Score=118.97 Aligned_cols=69 Identities=43% Similarity=0.794 Sum_probs=64.4
Q ss_pred CCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccCcCcc
Q 027712 109 PKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYN 181 (220)
Q Consensus 109 PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~~y~ 181 (220)
||||+|||++|+.+.+..++..||++ +..+|+++||++|++||+++|.+|.+.|.+++.+|..++ ..|+
T Consensus 1 PkrP~~af~lf~~~~~~~~k~~~p~~-~~~~i~~~~~~~W~~l~~~eK~~y~~~a~~~~~~y~~~~---~~y~ 69 (69)
T PF00505_consen 1 PKRPPNAFMLFCKEKRAKLKEENPDL-SNKEISKILAQMWKNLSEEEKAPYKEEAEEEKERYEKEM---PEYK 69 (69)
T ss_dssp SSSS--HHHHHHHHHHHHHHHHSTTS-THHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred CcCCCCHHHHHHHHHHHHHHHHhccc-ccccchhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH---HhcC
Confidence 89999999999999999999999999 899999999999999999999999999999999999999 6663
No 6
>smart00398 HMG high mobility group.
Probab=99.73 E-value=1.6e-17 Score=115.95 Aligned_cols=70 Identities=41% Similarity=0.759 Sum_probs=66.8
Q ss_pred CCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccCcCcc
Q 027712 108 KPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYN 181 (220)
Q Consensus 108 ~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~~y~ 181 (220)
+||+|+|||++|++++|..+...||++ ++.+|++.||.+|+.||+++|++|.++|.+++.+|..++ ..|+
T Consensus 1 ~pkrp~~~y~~f~~~~r~~~~~~~~~~-~~~~i~~~~~~~W~~l~~~ek~~y~~~a~~~~~~y~~~~---~~y~ 70 (70)
T smart00398 1 KPKRPMSAFMLFSQENRAKIKAENPDL-SNAEISKKLGERWKLLSEEEKAPYEEKAKKDKERYEEEM---PEYK 70 (70)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH---HhcC
Confidence 589999999999999999999999999 899999999999999999999999999999999999999 6663
No 7
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=99.72 E-value=1.5e-17 Score=118.70 Aligned_cols=72 Identities=44% Similarity=0.816 Sum_probs=62.5
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHhh-CCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccCcCcc
Q 027712 106 SNKPKRPPTAFFLFMDDFRKEYKEA-HPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYN 181 (220)
Q Consensus 106 ~~~PKrP~sAy~lF~~e~r~~~k~~-~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~~y~ 181 (220)
|++||+|+|||+||+.+++..++.. ++.. ++.++++.|+..|++||++||.+|.++|.+++.+|..+| ..|+
T Consensus 1 p~kpK~~~say~lF~~~~~~~~k~~G~~~~-~~~e~~k~~~~~Wk~Ls~~EK~~Y~~~A~~~k~~y~~e~---~~~~ 73 (73)
T PF09011_consen 1 PKKPKRPPSAYNLFMKEMRKEVKEEGGQKQ-SFREVMKEISERWKSLSEEEKEPYEERAKEDKERYEREM---KEWN 73 (73)
T ss_dssp SSS--SSSSHHHHHHHHHHHHHHHHT-T-S-SHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH---HHH-
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHhcccCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH---HhcC
Confidence 6789999999999999999999887 6665 789999999999999999999999999999999999999 7774
No 8
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=99.69 E-value=5.2e-17 Score=136.00 Aligned_cols=86 Identities=38% Similarity=0.667 Sum_probs=80.3
Q ss_pred HhhhccCCCCCCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhcc
Q 027712 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEG 176 (220)
Q Consensus 97 k~~kk~~kd~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~ 176 (220)
+..+++.+|||.||||+||||+|++++|.++...+|.+ ++.+|++.+|++|++|++++|++|...|..++++|..++
T Consensus 59 k~~~r~k~dpN~PKRp~sayf~y~~~~R~ei~~~~p~l-~~~e~~k~~~e~WK~Ltd~eke~y~k~~~~~~erYq~ek-- 135 (211)
T COG5648 59 KRLVRKKKDPNGPKRPLSAYFLYSAENRDEIRKENPKL-TFGEVGKLLSEKWKELTDEEKEPYYKEANSDRERYQREK-- 135 (211)
T ss_pred HHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHHhccHhhhhhHHHHHhhHHHHHHHHH--
Confidence 44567889999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CcCccccCcc
Q 027712 177 NGDYNEVEDK 186 (220)
Q Consensus 177 ~~~y~~~~~~ 186 (220)
..|..+.+-
T Consensus 136 -~~y~~k~~~ 144 (211)
T COG5648 136 -EEYNKKLPN 144 (211)
T ss_pred -HhhhcccCC
Confidence 888876554
No 9
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=99.67 E-value=3.2e-16 Score=108.06 Aligned_cols=65 Identities=45% Similarity=0.759 Sum_probs=63.1
Q ss_pred CCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHh
Q 027712 109 PKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174 (220)
Q Consensus 109 PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~ 174 (220)
||+|+|||++|+++.|..++..||++ +..+|++.||.+|+.||+++|.+|.+.|..++.+|..++
T Consensus 1 pkrp~~af~~f~~~~~~~~~~~~~~~-~~~~i~~~~~~~W~~l~~~~k~~y~~~a~~~~~~y~~~~ 65 (66)
T cd00084 1 PKRPLSAYFLFSQEHRAEVKAENPGL-SVGEISKILGEMWKSLSEEEKKKYEEKAEKDKERYEKEM 65 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 78999999999999999999999998 899999999999999999999999999999999999876
No 10
>KOG0381 consensus HMG box-containing protein [General function prediction only]
Probab=99.63 E-value=9.7e-16 Score=114.27 Aligned_cols=75 Identities=45% Similarity=0.813 Sum_probs=70.6
Q ss_pred CC--CCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccCc-Ccc
Q 027712 105 DS--NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNG-DYN 181 (220)
Q Consensus 105 d~--~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~-~y~ 181 (220)
++ +.||+|+|||++|+.+.|..++.+||++ ++.+|++++|++|++|++++|.+|...|..++.+|..+| . .|+
T Consensus 17 ~p~~~~pkrp~sa~~~f~~~~~~~~k~~~p~~-~~~~v~k~~g~~W~~l~~~~k~~y~~ka~~~k~~Y~~~~---~~~~~ 92 (96)
T KOG0381|consen 17 DPNAQAPKRPLSAFFLFSSEQRSKIKAENPGL-SVGEVAKALGEMWKNLAEEEKQPYEEKASKLKEKYEKEL---AGEYK 92 (96)
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH---HHHHh
Confidence 56 5999999999999999999999999998 899999999999999999999999999999999999999 7 666
Q ss_pred cc
Q 027712 182 EV 183 (220)
Q Consensus 182 ~~ 183 (220)
..
T Consensus 93 ~~ 94 (96)
T KOG0381|consen 93 AS 94 (96)
T ss_pred hc
Confidence 54
No 11
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=99.61 E-value=1.1e-15 Score=137.36 Aligned_cols=80 Identities=26% Similarity=0.558 Sum_probs=73.3
Q ss_pred cCCCCCCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccCcCcc
Q 027712 102 KDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYN 181 (220)
Q Consensus 102 ~~kd~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~~y~ 181 (220)
..+...+.||||||||+|.+..|.+|..+||++ .+.||+|.||.+||.|+++||.||+++|++++..|+++.|.| .|+
T Consensus 56 ~k~~~~hIKRPMNAFMVWSq~~RRkma~qnP~m-HNSEISK~LG~~WK~Lse~EKrPFi~EAeRLR~~HmkehPdY-KYR 133 (331)
T KOG0527|consen 56 DKTSTDRIKRPMNAFMVWSQGQRRKLAKQNPKM-HNSEISKRLGAEWKLLSEEEKRPFVDEAERLRAQHMKEYPDY-KYR 133 (331)
T ss_pred CCCCccccCCCcchhhhhhHHHHHHHHHhCcch-hhHHHHHHHHHHHhhcCHhhhccHHHHHHHHHHHHHHhCCCc-ccc
Confidence 345677899999999999999999999999999 889999999999999999999999999999999999999666 555
Q ss_pred cc
Q 027712 182 EV 183 (220)
Q Consensus 182 ~~ 183 (220)
..
T Consensus 134 PR 135 (331)
T KOG0527|consen 134 PR 135 (331)
T ss_pred cc
Confidence 54
No 12
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=99.47 E-value=1e-13 Score=116.20 Aligned_cols=136 Identities=21% Similarity=0.244 Sum_probs=116.1
Q ss_pred CcccccccCCCCchhhHH-----HHhhccCCccc-hhh-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCCCChh
Q 027712 23 TSSATLMRGRDGSAFARC-----EECNKNVPVAL-ISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPR 95 (220)
Q Consensus 23 ~~~~~~~r~~d~saf~~~-----e~~~~~~p~a~-~~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~~~~k 95 (220)
++|+.|+|.- |||..+ ++....+|.+. .++ +.+|++|+.|+++|+++|+..+..+. ++|.+++..|..
T Consensus 66 ~dpN~PKRp~--sayf~y~~~~R~ei~~~~p~l~~~e~~k~~~e~WK~Ltd~eke~y~k~~~~~~-erYq~ek~~y~~-- 140 (211)
T COG5648 66 KDPNGPKRPL--SAYFLYSAENRDEIRKENPKLTFGEVGKLLSEKWKELTDEEKEPYYKEANSDR-ERYQREKEEYNK-- 140 (211)
T ss_pred cCCCCCCCch--hHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHhccHhhhhhHHHHHhhHH-HHHHHHHHhhhc--
Confidence 4678888654 777654 34466677554 333 89999999999999999999999999 999999888853
Q ss_pred HHhhhccCCCCCCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHh
Q 027712 96 AKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174 (220)
Q Consensus 96 ~k~~kk~~kd~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~ 174 (220)
..+++.|..+|+-+-...|+.+...+|+. ...++++++|..|++|++.-|.+|++.+..++..|...+
T Consensus 141 ----------k~~~~~~~~~~~e~~~~~r~~~~~~~~~~-~~~e~~k~~~~~w~el~~skK~~~~~~~Kk~k~~~~~~~ 208 (211)
T COG5648 141 ----------KLPNKAPIGPFIENEPKIRPKVEGPSPDK-ALVEETKIISKAWSELDESKKKKYIDKYKKLKEEYDSFY 208 (211)
T ss_pred ----------ccCCCCCCchhhhccHHhccccCCCCcch-hhhHHhhhhhhhhhhhChhhhhHHHHHHHHHHHHHhhhc
Confidence 23678888899999999999999999987 888999999999999999999999999999999998877
No 13
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=99.45 E-value=7.6e-14 Score=130.05 Aligned_cols=77 Identities=42% Similarity=0.650 Sum_probs=71.5
Q ss_pred hccCCCCCCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccCcC
Q 027712 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGD 179 (220)
Q Consensus 100 kk~~kd~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~~ 179 (220)
.|+.+|||+|||++||||+|++..|..++.. ++ ++.+|++.+|++|+.||. |.+|.+.|+.++.+|+.+| .+
T Consensus 527 ~kk~kdpnapkra~sa~m~w~~~~r~~ik~d--gi-~~~dv~kk~g~~wk~ms~--k~~we~ka~~dk~ry~~em---~~ 598 (615)
T KOG0526|consen 527 GKKKKDPNAPKRATSAYMLWLNASRESIKED--GI-SVGDVAKKAGEKWKQMSA--KEEWEDKAAVDKQRYEDEM---KE 598 (615)
T ss_pred cccCCCCCCCccchhHHHHHHHhhhhhHhhc--Cc-hHHHHHHHHhHHHhhhcc--cchhhHHHHHHHHHHHHHH---Hh
Confidence 3567999999999999999999999999987 77 899999999999999998 9999999999999999999 99
Q ss_pred ccccC
Q 027712 180 YNEVE 184 (220)
Q Consensus 180 y~~~~ 184 (220)
|+...
T Consensus 599 yk~g~ 603 (615)
T KOG0526|consen 599 YKNGQ 603 (615)
T ss_pred hcCCC
Confidence 99433
No 14
>KOG3248 consensus Transcription factor TCF-4 [Transcription]
Probab=99.08 E-value=1.6e-10 Score=102.87 Aligned_cols=87 Identities=20% Similarity=0.336 Sum_probs=72.6
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccCcCccccCc
Q 027712 106 SNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVED 185 (220)
Q Consensus 106 ~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~~y~~~~~ 185 (220)
....|+|+|||++||+|.|..+.+++.- +...+|.++||++|..||.+|..+|.++|.++++-|...+|||..-.+-++
T Consensus 189 kphiKKPLNAFmlyMKEmRa~vvaEctl-KeSAaiNqiLGrRWH~LSrEEQAKYyElArKerqlH~qlYP~WSARdNYgK 267 (421)
T KOG3248|consen 189 KPHIKKPLNAFMLYMKEMRAKVVAECTL-KESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGK 267 (421)
T ss_pred CccccccHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCcchhhhhhh
Confidence 3467999999999999999999998864 467789999999999999999999999999999999999977755555555
Q ss_pred ccchhhhh
Q 027712 186 KADNEVED 193 (220)
Q Consensus 186 ~~~~~~~~ 193 (220)
+.....++
T Consensus 268 KkKrkReK 275 (421)
T KOG3248|consen 268 KKKRKREK 275 (421)
T ss_pred hhhhhhhc
Confidence 44444333
No 15
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=98.95 E-value=1.1e-09 Score=97.03 Aligned_cols=78 Identities=22% Similarity=0.495 Sum_probs=72.4
Q ss_pred cCCCCCCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccCcCcc
Q 027712 102 KDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYN 181 (220)
Q Consensus 102 ~~kd~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~~y~ 181 (220)
..+.|.+|-+|+-+||.|+...++++++.||++ ..-+|.++||.+|..|++++|+-|+..++..+..|++.| ..|.
T Consensus 58 ~pkpPkppekpl~pymrySrkvWd~VkA~nPe~-kLWeiGK~Ig~mW~dLpd~EK~ey~~EYeaEKieY~~sm---kayh 133 (410)
T KOG4715|consen 58 RPKPPKPPEKPLMPYMRYSRKVWDQVKASNPEL-KLWEIGKIIGGMWLDLPDEEKQEYLNEYEAEKIEYNESM---KAYH 133 (410)
T ss_pred CCCCCCCCCcccchhhHHhhhhhhhhhccCcch-HHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHHHH---HHhh
Confidence 345678889999999999999999999999999 789999999999999999999999999999999999999 8776
Q ss_pred cc
Q 027712 182 EV 183 (220)
Q Consensus 182 ~~ 183 (220)
..
T Consensus 134 ~s 135 (410)
T KOG4715|consen 134 NS 135 (410)
T ss_pred CC
Confidence 64
No 16
>KOG0528 consensus HMG-box transcription factor SOX5 [Transcription]
Probab=98.85 E-value=1.4e-09 Score=100.90 Aligned_cols=77 Identities=31% Similarity=0.522 Sum_probs=68.4
Q ss_pred CCCCCCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccCcCccc
Q 027712 103 DSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNE 182 (220)
Q Consensus 103 ~kd~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~~y~~ 182 (220)
...+++.|||+||||.|.++.|.++...+|++ ....|+++||.+|+.||..||+||.+.-.++-..|.+.. .+|+-
T Consensus 320 ~ss~PHIKRPMNAFMVWAkDERRKILqA~PDM-HNSnISKILGSRWKaMSN~eKQPYYEEQaRLSk~HlEk~---PdYrY 395 (511)
T KOG0528|consen 320 ASSEPHIKRPMNAFMVWAKDERRKILQAFPDM-HNSNISKILGSRWKAMSNTEKQPYYEEQARLSKLHLEKY---PDYRY 395 (511)
T ss_pred CCCCccccCCcchhhcccchhhhhhhhcCccc-cccchhHHhcccccccccccccchHHHHHHHHHhhhccC---ccccc
Confidence 34456779999999999999999999999999 667899999999999999999999999999999998888 66655
Q ss_pred c
Q 027712 183 V 183 (220)
Q Consensus 183 ~ 183 (220)
+
T Consensus 396 k 396 (511)
T KOG0528|consen 396 K 396 (511)
T ss_pred C
Confidence 4
No 17
>PTZ00199 high mobility group protein; Provisional
Probab=98.83 E-value=2.8e-09 Score=79.76 Aligned_cols=66 Identities=18% Similarity=0.086 Sum_probs=53.8
Q ss_pred CcccccccCCCCchhhHH-HH----hhccCCcc---chhh-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCC
Q 027712 23 TSSATLMRGRDGSAFARC-EE----CNKNVPVA---LISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTS 91 (220)
Q Consensus 23 ~~~~~~~r~~d~saf~~~-e~----~~~~~p~a---~~~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~ 91 (220)
+||+.|+|.. |||.+| .+ ....+|.. +.++ +.||++|+.||+.||++|+++|+.++ .+|..+|..|
T Consensus 18 kdp~~PKrP~--sAY~~F~~~~R~~i~~~~P~~~~~~~evsk~ige~Wk~ls~eeK~~y~~~A~~dk-~rY~~e~~~Y 92 (94)
T PTZ00199 18 KDPNAPKRAL--SAYMFFAKEKRAEIIAENPELAKDVAAVGKMVGEAWNKLSEEEKAPYEKKAQEDK-VRYEKEKAEY 92 (94)
T ss_pred CCCCCCCCCC--cHHHHHHHHHHHHHHHHCcCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 5678888777 777655 33 34566765 3455 89999999999999999999999999 8999999887
No 18
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=98.50 E-value=2.5e-08 Score=70.88 Aligned_cols=63 Identities=19% Similarity=0.077 Sum_probs=42.9
Q ss_pred cccccCCCCchhhHH-HHh----hcc-C-Cccchhh-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCC
Q 027712 26 ATLMRGRDGSAFARC-EEC----NKN-V-PVALISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTS 91 (220)
Q Consensus 26 ~~~~r~~d~saf~~~-e~~----~~~-~-p~a~~~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~ 91 (220)
..++|.+ |||.++ .++ ... . ...+.++ +.|+..|+.||++||.+|+++|+.++ .+|.++|..|
T Consensus 2 ~kpK~~~--say~lF~~~~~~~~k~~G~~~~~~~e~~k~~~~~Wk~Ls~~EK~~Y~~~A~~~k-~~y~~e~~~~ 72 (73)
T PF09011_consen 2 KKPKRPP--SAYNLFMKEMRKEVKEEGGQKQSFREVMKEISERWKSLSEEEKEPYEERAKEDK-ERYEREMKEW 72 (73)
T ss_dssp SS--SSS--SHHHHHHHHHHHHHHHHT-T-SSHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred cCCCCCC--CHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHHHHHHHhc
Confidence 3456655 567655 222 222 2 2233444 89999999999999999999999999 8999987654
No 19
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=98.30 E-value=8.6e-07 Score=63.52 Aligned_cols=57 Identities=14% Similarity=0.018 Sum_probs=46.8
Q ss_pred chhhHH-----HHhhccCCccchhh--hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCCC
Q 027712 35 SAFARC-----EECNKNVPVALISM--HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTST 92 (220)
Q Consensus 35 saf~~~-----e~~~~~~p~a~~~~--k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~~ 92 (220)
+||+++ ..+..++|...... ++||+.|+.||+++|++|.++|+.++ ++|..++..|.
T Consensus 7 naf~lf~~~~r~~~~~~~p~~~~~eisk~~g~~Wk~ls~eeK~~y~~~A~~~k-~~~~~~~p~Yk 70 (77)
T cd01389 7 NAFILYRQDKHAQLKTENPGLTNNEISRIIGRMWRSESPEVKAYYKELAEEEK-ERHAREYPDYK 70 (77)
T ss_pred cHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH-HHHHHHCCCCc
Confidence 577655 33456677654333 89999999999999999999999999 89999999984
No 20
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=98.26 E-value=1.1e-06 Score=62.14 Aligned_cols=56 Identities=18% Similarity=0.039 Sum_probs=45.6
Q ss_pred chhhHH-----HHhhccCCccch-hh-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCC
Q 027712 35 SAFARC-----EECNKNVPVALI-SM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTS 91 (220)
Q Consensus 35 saf~~~-----e~~~~~~p~a~~-~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~ 91 (220)
++|.++ ..+...+|.... ++ +.||+.|+.||+++|++|.+++..++ ++|..++..|
T Consensus 7 naf~~F~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k-~~y~~~~p~y 69 (72)
T cd01388 7 NAFMLFSKRHRRKVLQEYPLKENRAISKILGDRWKALSNEEKQPYYEEAKKLK-ELHMKLYPDY 69 (72)
T ss_pred cHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHHHHCcCC
Confidence 577655 333557777543 33 89999999999999999999999999 8999998887
No 21
>PF14887 HMG_box_5: HMG (high mobility group) box 5; PDB: 1L8Y_A 1L8Z_A 2HDZ_A.
Probab=98.13 E-value=1.8e-05 Score=56.85 Aligned_cols=75 Identities=21% Similarity=0.370 Sum_probs=61.5
Q ss_pred CCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccCcCccccCccc
Q 027712 108 KPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKA 187 (220)
Q Consensus 108 ~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~~y~~~~~~~ 187 (220)
.|-.|.+|--+|.+.....+.+.++.- ... ..+.+...|++|++.+|-+|+..|.++..+|+.+| .+|+..++..
T Consensus 3 lPE~PKt~qe~Wqq~vi~dYla~~~~d-r~K-~~kam~~~W~~me~Kekl~WIkKA~EdqKrYE~el---~e~r~~~~~~ 77 (85)
T PF14887_consen 3 LPETPKTAQEIWQQSVIGDYLAKFRND-RKK-ALKAMEAQWSQMEKKEKLKWIKKAAEDQKRYEREL---REMRSAPADA 77 (85)
T ss_dssp -S----THHHHHHHHHHHHHHHHTTST-HHH-HHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHH---HCCS-CCCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhHh-HHH-HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH---HHHhcCCCCC
Confidence 467788999999999999999889875 444 46689999999999999999999999999999999 9999887764
No 22
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=98.08 E-value=4.6e-06 Score=57.24 Aligned_cols=53 Identities=21% Similarity=0.152 Sum_probs=42.4
Q ss_pred chhhHH-H----HhhccCCc-cchhh-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhC
Q 027712 35 SAFARC-E----ECNKNVPV-ALISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKK 88 (220)
Q Consensus 35 saf~~~-e----~~~~~~p~-a~~~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~ 88 (220)
|+|.++ . .+...+|. .+.++ +.||..|+.||+++|++|.+.++.++ .+|..+|
T Consensus 6 saf~~f~~~~r~~~~~~~p~~~~~~i~~~~~~~W~~ls~~eK~~y~~~a~~~~-~~y~~e~ 65 (66)
T cd01390 6 SAYFLFSQEQRPKLKKENPDASVTEVTKILGEKWKELSEEEKKKYEEKAEKDK-ERYEKEM 65 (66)
T ss_pred cHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHhh
Confidence 678766 2 33555665 33444 89999999999999999999999999 8999876
No 23
>KOG2746 consensus HMG-box transcription factor Capicua and related proteins [Transcription]
Probab=98.04 E-value=3.6e-06 Score=81.15 Aligned_cols=70 Identities=30% Similarity=0.484 Sum_probs=64.0
Q ss_pred CCCCCCCCCCCCchhhHHHHHH--HHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHH
Q 027712 103 DSDSNKPKRPPTAFFLFMDDFR--KEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKA 173 (220)
Q Consensus 103 ~kd~~~PKrP~sAy~lF~~e~r--~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e 173 (220)
+.+..+..+|||||++|++.+| ..+...||+. .+.-|+++||+.|-.|-+.||+.|.++|.+.++.|-+.
T Consensus 176 kr~k~HirrPMnaf~ifskrhr~~g~vhq~~pn~-DNrtIskiLgewWytL~~~Ekq~yhdLa~Qvk~Ahfka 247 (683)
T KOG2746|consen 176 KRDKDHIRRPMNAFHIFSKRHRGEGRVHQRHPNQ-DNRTISKILGEWWYTLGPNEKQKYHDLAFQVKEAHFKA 247 (683)
T ss_pred cCcchhhhhhhHHHHHHHhhcCCccchhccCccc-cchhHHHHHhhhHhhhCchhhhhHHHHHHHHHHHHhhh
Confidence 3455678999999999999999 8888999998 78889999999999999999999999999999999885
No 24
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=97.92 E-value=4.9e-06 Score=57.65 Aligned_cols=57 Identities=18% Similarity=0.040 Sum_probs=44.3
Q ss_pred CchhhHH-----HHhhccCCccchhh--hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCC
Q 027712 34 GSAFARC-----EECNKNVPVALISM--HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTS 91 (220)
Q Consensus 34 ~saf~~~-----e~~~~~~p~a~~~~--k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~ 91 (220)
.|+|.++ ..+...+|.....- +.|+..|+.||+.+|++|.+.+..++ .+|..++..|
T Consensus 5 ~~af~lf~~~~~~~~k~~~p~~~~~~i~~~~~~~W~~l~~~eK~~y~~~a~~~~-~~y~~~~~~y 68 (69)
T PF00505_consen 5 PNAFMLFCKEKRAKLKEENPDLSNKEISKILAQMWKNLSEEEKAPYKEEAEEEK-ERYEKEMPEY 68 (69)
T ss_dssp --HHHHHHHHHHHHHHHHSTTSTHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcccccccchhhHHHHHhcCCHHHHHHHHHHHHHHH-HHHHHHHHhc
Confidence 4788766 23356677755333 89999999999999999999999999 8999877544
No 25
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=97.88 E-value=8e-06 Score=77.12 Aligned_cols=65 Identities=15% Similarity=0.088 Sum_probs=55.4
Q ss_pred CCcccccccCCCCchhhHH-----HHhhccCCccchhh-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCCC
Q 027712 22 STSSATLMRGRDGSAFARC-----EECNKNVPVALISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTST 92 (220)
Q Consensus 22 ~~~~~~~~r~~d~saf~~~-----e~~~~~~p~a~~~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~~ 92 (220)
.++|++|+|+- |||.+| +. -+..-+.+.++ +..+++|+.||. |.+|++.|+.++ +||+.+|..|.
T Consensus 530 ~kdpnapkra~--sa~m~w~~~~r~~-ik~dgi~~~dv~kk~g~~wk~ms~--k~~we~ka~~dk-~ry~~em~~yk 600 (615)
T KOG0526|consen 530 KKDPNAPKRAT--SAYMLWLNASRES-IKEDGISVGDVAKKAGEKWKQMSA--KEEWEDKAAVDK-QRYEDEMKEYK 600 (615)
T ss_pred CCCCCCCccch--hHHHHHHHhhhhh-HhhcCchHHHHHHHHhHHHhhhcc--cchhhHHHHHHH-HHHHHHHHhhc
Confidence 45999999765 899888 23 33347778888 999999999998 999999999999 89999999996
No 26
>smart00398 HMG high mobility group.
Probab=97.86 E-value=1.7e-05 Score=54.70 Aligned_cols=56 Identities=20% Similarity=0.147 Sum_probs=43.8
Q ss_pred chhhHH-H----HhhccCCccc-hhh-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCC
Q 027712 35 SAFARC-E----ECNKNVPVAL-ISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTS 91 (220)
Q Consensus 35 saf~~~-e----~~~~~~p~a~-~~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~ 91 (220)
|+|.++ . .+...+|... .++ +.|+..|+.||+.+|+.|.++++.++ .+|.+++..|
T Consensus 7 ~~y~~f~~~~r~~~~~~~~~~~~~~i~~~~~~~W~~l~~~ek~~y~~~a~~~~-~~y~~~~~~y 69 (70)
T smart00398 7 SAFMLFSQENRAKIKAENPDLSNAEISKKLGERWKLLSEEEKAPYEEKAKKDK-ERYEEEMPEY 69 (70)
T ss_pred cHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHHHHHHhc
Confidence 577655 2 2344566544 333 89999999999999999999999999 8999988765
No 27
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=97.74 E-value=3.1e-05 Score=52.67 Aligned_cols=53 Identities=21% Similarity=0.116 Sum_probs=41.5
Q ss_pred chhhHH-H----HhhccCCc-cchhh-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhC
Q 027712 35 SAFARC-E----ECNKNVPV-ALISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKK 88 (220)
Q Consensus 35 saf~~~-e----~~~~~~p~-a~~~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~ 88 (220)
|+|.++ . .+...+|. ...++ ..|+..|+.|++.+|++|.+.++.++ ..|.+++
T Consensus 6 ~af~~f~~~~~~~~~~~~~~~~~~~i~~~~~~~W~~l~~~~k~~y~~~a~~~~-~~y~~~~ 65 (66)
T cd00084 6 SAYFLFSQEHRAEVKAENPGLSVGEISKILGEMWKSLSEEEKKKYEEKAEKDK-ERYEKEM 65 (66)
T ss_pred cHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHhh
Confidence 578766 2 33556676 33444 89999999999999999999999999 7888754
No 28
>PF06382 DUF1074: Protein of unknown function (DUF1074); InterPro: IPR024460 This family consists of several proteins which appear to be specific to Insecta. The function of this family is unknown.
Probab=97.15 E-value=0.00064 Score=56.22 Aligned_cols=48 Identities=23% Similarity=0.486 Sum_probs=42.6
Q ss_pred CCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHH
Q 027712 113 PTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAE 165 (220)
Q Consensus 113 ~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~ 165 (220)
.+||+-|+.++|. .|.+| +..|+....+.+|..||+.+|..|..++..
T Consensus 83 nnaYLNFLReFRr----kh~~L-~p~dlI~~AAraW~rLSe~eK~rYrr~~~~ 130 (183)
T PF06382_consen 83 NNAYLNFLREFRR----KHCGL-SPQDLIQRAARAWCRLSEAEKNRYRRMAPS 130 (183)
T ss_pred chHHHHHHHHHHH----HccCC-CHHHHHHHHHHHHHhCCHHHHHHHHhhcch
Confidence 5799999999986 46778 889999999999999999999999987653
No 29
>KOG0381 consensus HMG box-containing protein [General function prediction only]
Probab=97.12 E-value=0.0004 Score=51.33 Aligned_cols=62 Identities=21% Similarity=0.035 Sum_probs=48.0
Q ss_pred ccccCCCCchhhHH--H---HhhccCCcc-chhh-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCC-CC
Q 027712 27 TLMRGRDGSAFARC--E---ECNKNVPVA-LISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKP-TS 91 (220)
Q Consensus 27 ~~~r~~d~saf~~~--e---~~~~~~p~a-~~~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~-~~ 91 (220)
.++|.. |||..+ + .....+|.. ..++ +.++..|+.|+++++++|+..+..++ ++|..+|. .|
T Consensus 22 ~pkrp~--sa~~~f~~~~~~~~k~~~p~~~~~~v~k~~g~~W~~l~~~~k~~y~~ka~~~k-~~Y~~~~~~~~ 91 (96)
T KOG0381|consen 22 APKRPL--SAFFLFSSEQRSKIKAENPGLSVGEVAKALGEMWKNLAEEEKQPYEEKASKLK-EKYEKELAGEY 91 (96)
T ss_pred CCCCCC--cHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 566655 466544 2 236667773 3444 89999999999999999999999999 89999987 55
No 30
>PF04690 YABBY: YABBY protein; InterPro: IPR006780 YABBY proteins are a group of plant-specific transcription factors involved in the specification of abaxial polarity in lateral organs such as leaves and floral organs [, ].
Probab=96.67 E-value=0.0032 Score=52.03 Aligned_cols=48 Identities=23% Similarity=0.419 Sum_probs=42.2
Q ss_pred CCCCCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCC
Q 027712 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMT 152 (220)
Q Consensus 104 kd~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls 152 (220)
+.|.+-.|-+|||..|+++.-..|+..+|++ +..|....+++.|...+
T Consensus 117 kPPEKRqR~psaYn~f~k~ei~rik~~~p~i-shkeaFs~aAknW~h~p 164 (170)
T PF04690_consen 117 KPPEKRQRVPSAYNRFMKEEIQRIKAENPDI-SHKEAFSAAAKNWAHFP 164 (170)
T ss_pred CCccccCCCchhHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhhhCc
Confidence 3344556779999999999999999999999 99999999999998765
No 31
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=96.67 E-value=0.0015 Score=59.35 Aligned_cols=66 Identities=18% Similarity=0.102 Sum_probs=48.7
Q ss_pred cccccccCCCCchhhHH--HHh---hccCCccchhh--hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCCC
Q 027712 24 SSATLMRGRDGSAFARC--EEC---NKNVPVALISM--HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTST 92 (220)
Q Consensus 24 ~~~~~~r~~d~saf~~~--e~~---~~~~p~a~~~~--k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~~ 92 (220)
...-+||.- .||..| .++ .+.+|..-... |.+|.+||.|++.||.+|.++|+..+ ....++...|.
T Consensus 59 ~~~hIKRPM--NAFMVWSq~~RRkma~qnP~mHNSEISK~LG~~WK~Lse~EKrPFi~EAeRLR-~~HmkehPdYK 131 (331)
T KOG0527|consen 59 STDRIKRPM--NAFMVWSQGQRRKLAKQNPKMHNSEISKRLGAEWKLLSEEEKRPFVDEAERLR-AQHMKEYPDYK 131 (331)
T ss_pred CccccCCCc--chhhhhhHHHHHHHHHhCcchhhHHHHHHHHHHHhhcCHhhhccHHHHHHHHH-HHHHHhCCCcc
Confidence 344566554 599999 222 55566554333 89999999999999999999999999 66666666664
No 32
>PF08073 CHDNT: CHDNT (NUC034) domain; InterPro: IPR012958 The CHD N-terminal domain is found in PHD/RING fingers and chromo domain-associated helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.39 E-value=0.052 Score=36.71 Aligned_cols=40 Identities=18% Similarity=0.358 Sum_probs=35.4
Q ss_pred CCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCCh
Q 027712 113 PTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTD 153 (220)
Q Consensus 113 ~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~ 153 (220)
+|.|-+|.+-.|+.+...||++ ....+..+++.+|++-+.
T Consensus 13 lt~yK~Fsq~vRP~l~~~NPk~-~~sKl~~l~~AKwrEF~~ 52 (55)
T PF08073_consen 13 LTNYKAFSQHVRPLLAKANPKA-PMSKLMMLLQAKWREFQE 52 (55)
T ss_pred HHHHHHHHHHHHHHHHHHCCCC-cHHHHHHHHHHHHHHHHh
Confidence 4667799999999999999999 888999999999997543
No 33
>KOG0528 consensus HMG-box transcription factor SOX5 [Transcription]
Probab=93.40 E-value=0.065 Score=50.66 Aligned_cols=60 Identities=18% Similarity=0.114 Sum_probs=42.1
Q ss_pred cccccccccCCcccccccCCCCchhhHH-HHhhccCCccchhh------hhhhHHHhhchHHhhhhhhhhhhhhh
Q 027712 13 RKRVDAQSASTSSATLMRGRDGSAFARC-EECNKNVPVALISM------HSCSLDAKIKMNLEAQVVEKPAEINK 80 (220)
Q Consensus 13 rkrv~~~~~~~~~~~~~r~~d~saf~~~-e~~~~~~p~a~~~~------k~cs~~Wk~ls~~EK~~y~~~a~~~k 80 (220)
|.|+... +-.+| =..||.-| .+-..++=-|+.|| +++|.+|+.||+.||++|++.-+..-
T Consensus 317 rg~~ss~------PHIKR--PMNAFMVWAkDERRKILqA~PDMHNSnISKILGSRWKaMSN~eKQPYYEEQaRLS 383 (511)
T KOG0528|consen 317 RGRASSE------PHIKR--PMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMSNTEKQPYYEEQARLS 383 (511)
T ss_pred cCcCCCC------ccccC--CcchhhcccchhhhhhhhcCccccccchhHHhcccccccccccccchHHHHHHHH
Confidence 5666542 23554 45799999 33334455677788 79999999999999999977544443
No 34
>PF14887 HMG_box_5: HMG (high mobility group) box 5; PDB: 1L8Y_A 1L8Z_A 2HDZ_A.
Probab=92.85 E-value=0.062 Score=38.85 Aligned_cols=39 Identities=15% Similarity=-0.005 Sum_probs=34.9
Q ss_pred hhhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCCCC
Q 027712 54 MHSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTE 93 (220)
Q Consensus 54 ~k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~~~ 93 (220)
.+-+...|+.|++.+|-+|...|.++. ++|+++|..|..
T Consensus 34 ~kam~~~W~~me~Kekl~WIkKA~Edq-KrYE~el~e~r~ 72 (85)
T PF14887_consen 34 LKAMEAQWSQMEKKEKLKWIKKAAEDQ-KRYERELREMRS 72 (85)
T ss_dssp HHHHHHHHHTTGGGHHHHHHHHHHHHH-HHHHHHHHCCS-
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHH-HHHHHHHHHHhc
Confidence 367889999999999999999999999 899999988853
No 35
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=89.40 E-value=0.2 Score=45.29 Aligned_cols=52 Identities=10% Similarity=-0.135 Sum_probs=44.8
Q ss_pred HHhhccCCccchhh--hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCCCC
Q 027712 41 EECNKNVPVALISM--HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTE 93 (220)
Q Consensus 41 e~~~~~~p~a~~~~--k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~~~ 93 (220)
...+..+|++..=- ++++..|..|.+.||+.|...++..| ..|+..|..|..
T Consensus 81 d~VkA~nPe~kLWeiGK~Ig~mW~dLpd~EK~ey~~EYeaEK-ieY~~smkayh~ 134 (410)
T KOG4715|consen 81 DQVKASNPELKLWEIGKIIGGMWLDLPDEEKQEYLNEYEAEK-IEYNESMKAYHN 134 (410)
T ss_pred hhhhccCcchHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHH-HHHHHHHHHhhC
Confidence 56677777765433 99999999999999999999999999 899999988864
No 36
>PF06244 DUF1014: Protein of unknown function (DUF1014); InterPro: IPR010422 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=87.52 E-value=0.69 Score=36.30 Aligned_cols=47 Identities=19% Similarity=0.359 Sum_probs=40.5
Q ss_pred CCC-CCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChh
Q 027712 107 NKP-KRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDE 154 (220)
Q Consensus 107 ~~P-KrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~e 154 (220)
.+| +|=.-||.-|.....+.++.++|++ -.+++-.+|.+.|...|+.
T Consensus 70 rHPErR~KAAy~afeE~~Lp~lK~E~PgL-rlsQ~kq~l~K~w~KSPeN 117 (122)
T PF06244_consen 70 RHPERRMKAAYKAFEERRLPELKEENPGL-RLSQYKQMLWKEWQKSPEN 117 (122)
T ss_pred CCcchhHHHHHHHHHHHHhHHHHhhCCCc-hHHHHHHHHHHHHhcCCCC
Confidence 344 5556899999999999999999999 7899999999999887753
No 37
>PF04769 MAT_Alpha1: Mating-type protein MAT alpha 1; InterPro: IPR006856 This family includes Saccharomyces cerevisiae (Baker's yeast) mating type protein alpha 1 (P01365 from SWISSPROT). MAT alpha 1 is a transcription activator that activates mating-type alpha-specific genes with the help of the MADS-box containing MCM1 transcription factor, which together bind cooperatively to PQ elements upstream of alpha-specific genes. The MCM1-MATalpha1 complex is required for the proper DNA-bending that is needed for transcriptional activation []. Alpha 1 interacts in vivo with STE12, linking expression of alpha-specific genes to the alpha-pheromone (IPR006742 from INTERPRO) response pathway [].; GO: 0000772 mating pheromone activity, 0003677 DNA binding, 0045895 positive regulation of transcription, mating-type specific, 0005634 nucleus
Probab=86.44 E-value=1.1 Score=38.17 Aligned_cols=44 Identities=18% Similarity=0.330 Sum_probs=33.9
Q ss_pred CCCCCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCC
Q 027712 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMT 152 (220)
Q Consensus 104 kd~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls 152 (220)
.....++||+|+|+.|..=+- ...|+. ...+++..|+..|..=+
T Consensus 39 ~~~~~~kr~lN~Fm~FRsyy~----~~~~~~-~Qk~~S~~l~~lW~~dp 82 (201)
T PF04769_consen 39 RSPEKAKRPLNGFMAFRSYYS----PIFPPL-PQKELSGILTKLWEKDP 82 (201)
T ss_pred ccccccccchhHHHHHHHHHH----hhcCCc-CHHHHHHHHHHHHhCCc
Confidence 345567999999999965443 456776 67899999999998743
No 38
>KOG3248 consensus Transcription factor TCF-4 [Transcription]
Probab=80.82 E-value=1.3 Score=40.46 Aligned_cols=26 Identities=8% Similarity=-0.165 Sum_probs=25.0
Q ss_pred hhhhHHHhhchHHhhhhhhhhhhhhh
Q 027712 55 HSCSLDAKIKMNLEAQVVEKPAEINK 80 (220)
Q Consensus 55 k~cs~~Wk~ls~~EK~~y~~~a~~~k 80 (220)
.++|.+|-.||-+|..+|.++|..++
T Consensus 224 qiLGrRWH~LSrEEQAKYyElArKer 249 (421)
T KOG3248|consen 224 QILGRRWHALSREEQAKYYELARKER 249 (421)
T ss_pred HHHhHHHhhhhHHHHHHHHHHHHHHH
Confidence 79999999999999999999999987
No 39
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=76.98 E-value=4.6 Score=34.00 Aligned_cols=45 Identities=18% Similarity=0.479 Sum_probs=38.4
Q ss_pred ChhhHHH-HHHHHhhcCChhhhHHHHHHHHH-HHHHHHHHhccCcCcccc
Q 027712 136 GVTGVAK-EAGEKWKNMTDEEKKPYLDKAAE-LKADYSKAMEGNGDYNEV 183 (220)
Q Consensus 136 ~~~ei~k-~l~~~Wk~Ls~eeK~~Y~~~A~~-~k~~Y~~e~~~~~~y~~~ 183 (220)
++..|++ .||.-|+.+|+++++.|.+.... +...|-..+ ..|...
T Consensus 65 Df~~mar~vLG~~W~~~s~~Qr~~F~~~F~~~l~~tY~~~l---~~y~~~ 111 (198)
T TIGR03481 65 DLPAMARLTLGSSWTSLSPEQRRRFIGAFRELSIATYASQF---KSYAGE 111 (198)
T ss_pred CHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHH---HhhcCc
Confidence 6777877 68999999999999999998888 778899999 777653
No 40
>KOG3223 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.88 E-value=2.2 Score=36.06 Aligned_cols=54 Identities=22% Similarity=0.394 Sum_probs=45.9
Q ss_pred CCC-CCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHH
Q 027712 107 NKP-KRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164 (220)
Q Consensus 107 ~~P-KrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~ 164 (220)
.+| +|=.-||.-|-...-+.++.+||++ ..+++-.+|-.+|..-|+. ||.+.+.
T Consensus 162 rHPEkRmrAA~~afEe~~LPrLK~e~P~l-rlsQ~Kqll~Kew~KsPDN---P~Nq~~~ 216 (221)
T KOG3223|consen 162 RHPEKRMRAAFKAFEEARLPRLKKENPGL-RLSQYKQLLKKEWQKSPDN---PFNQAAV 216 (221)
T ss_pred cChHHHHHHHHHHHHHhhchhhhhcCCCc-cHHHHHHHHHHHHhhCCCC---hhhHHhh
Confidence 455 6667889999999999999999999 8899999999999999876 7776653
No 41
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=73.17 E-value=7.2 Score=33.16 Aligned_cols=49 Identities=24% Similarity=0.372 Sum_probs=39.9
Q ss_pred CCCCCChhhHHH-HHHHHhhcCChhhhHHHHHHHHH-HHHHHHHHhccCcCcccc
Q 027712 131 HPDSKGVTGVAK-EAGEKWKNMTDEEKKPYLDKAAE-LKADYSKAMEGNGDYNEV 183 (220)
Q Consensus 131 ~P~~~~~~ei~k-~l~~~Wk~Ls~eeK~~Y~~~A~~-~k~~Y~~e~~~~~~y~~~ 183 (220)
-|.. ++..+++ .||.-|+.+|++++..|.+.... +..-|-..+ ..|...
T Consensus 65 ~p~~-Df~~~s~~vLG~~wr~as~eQr~~F~~~F~~~Lv~tYa~~l---~~y~~q 115 (211)
T PRK15117 65 LPYV-QVKYAGALVLGRYYKDATPAQREAYFAAFREYLKQAYGQAL---AMYHGQ 115 (211)
T ss_pred cccC-CHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHH---HHhCCc
Confidence 3566 7787876 68999999999999999988777 556799999 777654
No 42
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=48.21 E-value=20 Score=28.94 Aligned_cols=47 Identities=17% Similarity=0.478 Sum_probs=33.8
Q ss_pred CCCCChhhHHH-HHHHHhhcCChhhhHHHHHHHHH-HHHHHHHHhccCcCccc
Q 027712 132 PDSKGVTGVAK-EAGEKWKNMTDEEKKPYLDKAAE-LKADYSKAMEGNGDYNE 182 (220)
Q Consensus 132 P~~~~~~ei~k-~l~~~Wk~Ls~eeK~~Y~~~A~~-~k~~Y~~e~~~~~~y~~ 182 (220)
|.. ++..|++ .||.-|+.||+++++.|...... +...|-..+ ..|..
T Consensus 36 ~~~-D~~~~ar~~LG~~w~~~s~~q~~~F~~~f~~~l~~~Y~~~l---~~y~~ 84 (170)
T PF05494_consen 36 PYF-DFERMARRVLGRYWRKASPAQRQRFVEAFKQLLVRTYAKRL---DEYSG 84 (170)
T ss_dssp GGB--HHHHHHHHHGGGTTTS-HHHHHHHHHHHHHHHHHHHHHHH---HT-SS
T ss_pred HhC-CHHHHHHHHHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHH---HhhCC
Confidence 344 6666666 46889999999999999987776 556788888 66664
No 43
>PF12881 NUT_N: NUT protein N terminus; InterPro: IPR024309 This domain is found in the N-terminal region of Nuclear Testis (NUT) proteins. It is also found in FAM22, which are a family of uncharacterised mammalian proteins.
Probab=38.71 E-value=68 Score=29.19 Aligned_cols=53 Identities=11% Similarity=0.226 Sum_probs=45.4
Q ss_pred CCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHH
Q 027712 113 PTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166 (220)
Q Consensus 113 ~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~ 166 (220)
..|+-.|+.-.-..+....|.| +..|-....-+.|...|.-+|..|.++|++-
T Consensus 229 ~EAlSCFLIpvLrsLar~kPtM-tlEeGl~ra~qEW~~~SnfdRmifyemaekF 281 (328)
T PF12881_consen 229 AEALSCFLIPVLRSLARLKPTM-TLEEGLWRAVQEWQHTSNFDRMIFYEMAEKF 281 (328)
T ss_pred hhhhhhhHHHHHHHHHhcCCCc-cHHHHHHHHHHHhhccccccHHHHHHHHHHH
Confidence 5677777777777777889999 8899999999999999999999999998754
No 44
>PF06382 DUF1074: Protein of unknown function (DUF1074); InterPro: IPR024460 This family consists of several proteins which appear to be specific to Insecta. The function of this family is unknown.
Probab=31.69 E-value=48 Score=27.76 Aligned_cols=25 Identities=8% Similarity=-0.172 Sum_probs=20.8
Q ss_pred hhhhHHHhhchHHhhhhhhhhhhhh
Q 027712 55 HSCSLDAKIKMNLEAQVVEKPAEIN 79 (220)
Q Consensus 55 k~cs~~Wk~ls~~EK~~y~~~a~~~ 79 (220)
...+..|..||+.+|..|..++...
T Consensus 107 ~~AAraW~rLSe~eK~rYrr~~~~~ 131 (183)
T PF06382_consen 107 QRAARAWCRLSEAEKNRYRRMAPSV 131 (183)
T ss_pred HHHHHHHHhCCHHHHHHHHhhcchh
Confidence 6788999999999999999865433
No 45
>PF01352 KRAB: KRAB box; InterPro: IPR001909 The Krueppel-associated box (KRAB) is a domain of around 75 amino acids that is found in the N-terminal part of about one third of eukaryotic Krueppel-type C2H2 zinc finger proteins (ZFPs) []. It is enriched in charged amino acids and can be divided into subregions A and B, which are predicted to fold into two amphipathic alpha-helices. The KRAB A and B boxes can be separated by variable spacer segments and many KRAB proteins contain only the A box []. The functions currently known for members of the KRAB-containing protein family include transcriptional repression of RNA polymerase I, II, and III promoters, binding and splicing of RNA, and control of nucleolus function. The KRAB domain functions as a transcriptional repressor when tethered to the template DNA by a DNA-binding domain. A sequence of 45 amino acids in the KRAB A subdomain has been shown to be necessary and sufficient for transcriptional repression. The B box does not repress by itself but does potentiate the repression exerted by the KRAB A subdomain [, ]. Gene silencing requires the binding of the KRAB domain to the RING-B box-coiled coil (RBCC) domain of the KAP-1/TIF1-beta corepressor. As KAP-1 binds to the heterochromatin proteins HP1, it has been proposed that the KRAB-ZFP-bound target gene could be silenced following recruitment to heterochromatin [, ]. KRAB-ZFPs probably constitute the single largest class of transcription factors within the human genome []. Although the function of KRAB-ZFPs is largely unknown, they appear to play important roles during cell differentiation and development. The KRAB domain is generally encoded by two exons. The regions coded by the two exons are known as KRAB-A and KRAB-B.; GO: 0003676 nucleic acid binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1V65_A.
Probab=31.17 E-value=40 Score=21.15 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=16.0
Q ss_pred hhhHHHHHH-HHhhcCChhhhHHHHHHHH
Q 027712 137 VTGVAKEAG-EKWKNMTDEEKKPYLDKAA 164 (220)
Q Consensus 137 ~~ei~k~l~-~~Wk~Ls~eeK~~Y~~~A~ 164 (220)
+.+|+--++ +.|..|.+.+|..|.+.-.
T Consensus 3 f~Dvav~fs~eEW~~L~~~Qk~ly~dvm~ 31 (41)
T PF01352_consen 3 FEDVAVYFSQEEWELLDPAQKNLYRDVML 31 (41)
T ss_dssp ----TT---HHHHHTS-HHHHHHHHHHHH
T ss_pred EEEEEEEcChhhcccccceecccchhHHH
Confidence 344555555 5699999999999987643
No 46
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.56 E-value=53 Score=31.01 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=31.5
Q ss_pred cCChhhhHHHHHHHHHHHHHHHHHhccCcCccccCcccch
Q 027712 150 NMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADN 189 (220)
Q Consensus 150 ~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~~y~~~~~~~~~ 189 (220)
+|.+.+|++|....+.....|++.. .+|+..+++...
T Consensus 268 E~qe~ek~kyqeEfe~~q~elek~k---~efkk~hpd~~~ 304 (497)
T KOG3838|consen 268 EMQELEKAKYQEEFEWAQLELEKRK---DEFKKSHPDAQG 304 (497)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhH---hhhccCCchhhc
Confidence 4567789999999999999999999 999999998544
No 47
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.06 E-value=79 Score=26.96 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=35.6
Q ss_pred HHHHHHHhhcCChhhhHHHHHHHHH-HHHHHHHHhccCcCccccCcc
Q 027712 141 AKEAGEKWKNMTDEEKKPYLDKAAE-LKADYSKAMEGNGDYNEVEDK 186 (220)
Q Consensus 141 ~k~l~~~Wk~Ls~eeK~~Y~~~A~~-~k~~Y~~e~~~~~~y~~~~~~ 186 (220)
...||.-|+.+|+++++.|...... +...|-..+ ..|+.+...
T Consensus 77 ~~vLGk~~k~aspeQ~~~F~~aF~~yl~q~Y~~aL---~~Y~~q~~~ 120 (202)
T COG2854 77 KLVLGKYYKTASPEQRQAFFKAFRTYLEQTYGQAL---LDYKGQTLK 120 (202)
T ss_pred HHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHH---HHccCCCce
Confidence 3457899999999999999987766 566799999 899887654
No 48
>PF13875 DUF4202: Domain of unknown function (DUF4202)
Probab=26.98 E-value=1.1e+02 Score=25.80 Aligned_cols=40 Identities=13% Similarity=0.467 Sum_probs=32.5
Q ss_pred CchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhH
Q 027712 114 TAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKK 157 (220)
Q Consensus 114 sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~ 157 (220)
-+-+.|+..+...+...| +-..+..+|...|+.||+.-++
T Consensus 130 vacLVFL~~~f~~F~~~~----deeK~v~Il~KTw~KMS~~g~~ 169 (185)
T PF13875_consen 130 VACLVFLEYYFEDFAAKH----DEEKIVDILRKTWRKMSERGHE 169 (185)
T ss_pred hHHHHhHHHHHHHHHhcC----CHHHHHHHHHHHHHHCCHHHHH
Confidence 357789999999998877 3345889999999999998765
No 49
>PF11304 DUF3106: Protein of unknown function (DUF3106); InterPro: IPR021455 Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Probab=22.86 E-value=1.3e+02 Score=22.81 Aligned_cols=25 Identities=20% Similarity=0.535 Sum_probs=16.0
Q ss_pred hHHHHHHHHhhcCChhhhHHHHHHH
Q 027712 139 GVAKEAGEKWKNMTDEEKKPYLDKA 163 (220)
Q Consensus 139 ei~k~l~~~Wk~Ls~eeK~~Y~~~A 163 (220)
++..-+...|..|++..+..+...|
T Consensus 11 ~~L~pl~~~W~~l~~~qr~k~l~~a 35 (107)
T PF11304_consen 11 QALAPLAERWNSLPPEQRRKWLQIA 35 (107)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4555666677777777666666555
No 50
>PRK10236 hypothetical protein; Provisional
Probab=21.63 E-value=91 Score=27.24 Aligned_cols=48 Identities=19% Similarity=0.303 Sum_probs=29.3
Q ss_pred chhhHHHHHHHHHHhhCCCCCChhh-----HHHHHHHHhhcCChhhhHHHHHH
Q 027712 115 AFFLFMDDFRKEYKEAHPDSKGVTG-----VAKEAGEKWKNMTDEEKKPYLDK 162 (220)
Q Consensus 115 Ay~lF~~e~r~~~k~~~P~~~~~~e-----i~k~l~~~Wk~Ls~eeK~~Y~~~ 162 (220)
.|---+.+.-..++-.+..-.+..+ +.+.+...|+.||++|++.+.+.
T Consensus 88 ~YreIL~DVc~~LKV~y~~~~st~~iE~~il~kll~~a~~kms~eE~~~L~~~ 140 (237)
T PRK10236 88 LYRAILLDVSKRLKLKADKEMSTFEIEQQLLEQFLRNTWKKMDEEHKQEFLHA 140 (237)
T ss_pred cHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 4444444444455443322113333 47889999999999999876543
No 51
>cd07081 ALDH_F20_ACDH_EutE-like Coenzyme A acylating aldehyde dehydrogenase (ACDH), Ethanolamine utilization protein EutE, and related proteins. Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA. The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH, and may be critical enzymes in the fermentative pathway.
Probab=20.61 E-value=1.8e+02 Score=27.38 Aligned_cols=37 Identities=22% Similarity=0.120 Sum_probs=32.4
Q ss_pred hhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHh
Q 027712 138 TGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174 (220)
Q Consensus 138 ~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~ 174 (220)
.+.++.....|+.+|..+|..+...+....+++..++
T Consensus 5 i~~A~~A~~~W~~~~~~~R~~iL~~~a~~l~~~~~el 41 (439)
T cd07081 5 VAAAKVAQQGLSCKSQEMVDLIFRAAAEAAEDARIDL 41 (439)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777889999999999999999999988888887
Done!