Query 027712
Match_columns 220
No_of_seqs 214 out of 1266
Neff 6.6
Searched_HMMs 29240
Date Tue Mar 26 00:05:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027712.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027712hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yrq_A High mobility group pro 100.0 4.7E-32 1.6E-36 222.0 11.6 154 23-184 11-173 (173)
2 2gzk_A Sex-determining region 100.0 1.6E-30 5.6E-35 209.8 12.2 148 27-182 4-158 (159)
3 3tmm_A Transcription factor A, 99.9 1.2E-29 4E-34 218.0 1.6 153 23-186 37-216 (238)
4 3tq6_A Transcription factor A, 99.9 2E-29 6.7E-34 213.5 2.0 153 23-186 5-184 (214)
5 1k99_A Upstream binding factor 99.9 5.6E-23 1.9E-27 154.2 8.5 83 100-186 2-84 (99)
6 1hme_A High mobility group pro 99.9 2.7E-22 9.2E-27 143.2 9.7 76 103-182 1-76 (77)
7 2eqz_A High mobility group pro 99.9 3.1E-22 1.1E-26 146.1 8.3 79 100-181 7-86 (86)
8 2co9_A Thymus high mobility gr 99.9 2.7E-22 9.2E-27 151.1 7.4 83 100-186 9-91 (102)
9 1aab_A High mobility group pro 99.9 6.1E-22 2.1E-26 143.5 8.0 79 103-184 2-81 (83)
10 1hry_A Human SRY; DNA, DNA-bin 99.9 1.7E-21 5.7E-26 138.8 9.1 73 105-181 1-73 (76)
11 2e6o_A HMG box-containing prot 99.9 1.3E-21 4.6E-26 143.1 8.8 77 101-181 10-86 (87)
12 2crj_A SWI/SNF-related matrix- 99.9 1.5E-21 5.3E-26 144.2 8.4 77 103-183 2-78 (92)
13 2cs1_A PMS1 protein homolog 1; 99.8 1.2E-21 4.1E-26 144.8 7.4 79 104-186 3-81 (92)
14 1wgf_A Upstream binding factor 99.8 3.3E-22 1.1E-26 147.4 4.2 75 99-174 11-85 (90)
15 3nm9_A HMG-D, high mobility gr 99.8 1.7E-21 5.8E-26 138.0 7.1 73 106-184 1-73 (73)
16 1cg7_A Protein (NON histone pr 99.8 2.2E-22 7.6E-27 149.1 0.9 81 100-184 12-92 (93)
17 2lhj_A High mobility group pro 99.8 5.2E-22 1.8E-26 148.1 2.5 80 100-183 14-95 (97)
18 1wxl_A Single-strand recogniti 99.8 8.1E-21 2.8E-25 134.5 8.2 72 106-183 1-72 (73)
19 1j46_A SRY, sex-determining re 99.8 1.5E-20 5.3E-25 136.8 9.9 75 105-183 1-75 (85)
20 1ckt_A High mobility group 1 p 99.8 1.1E-20 3.7E-25 132.8 8.5 70 108-180 1-71 (71)
21 1wz6_A HMG-box transcription f 99.8 7.5E-21 2.6E-25 137.4 7.8 77 104-184 3-79 (82)
22 4a3n_A Transcription factor SO 99.8 8.4E-21 2.9E-25 133.1 6.9 71 107-181 1-71 (71)
23 3f27_D Transcription factor SO 99.8 2.2E-20 7.5E-25 135.1 8.5 74 105-182 3-76 (83)
24 1gt0_D Transcription factor SO 99.8 3.3E-20 1.1E-24 133.3 9.3 73 107-183 1-73 (80)
25 4euw_A Transcription factor SO 99.8 3.4E-20 1.2E-24 140.6 9.3 77 102-182 23-99 (106)
26 3u2b_C Transcription factor SO 99.8 3.5E-20 1.2E-24 132.7 8.6 70 107-177 1-70 (79)
27 2lef_A LEF-1 HMG, protein (lym 99.8 6.5E-20 2.2E-24 133.7 9.7 73 107-183 1-73 (86)
28 1i11_A Transcription factor SO 99.8 4.1E-20 1.4E-24 133.2 7.9 71 106-177 2-72 (81)
29 1l8y_A Upstream binding factor 99.8 6.6E-20 2.3E-24 135.4 8.4 76 106-186 2-77 (91)
30 1v64_A Nucleolar transcription 99.8 4.2E-20 1.4E-24 140.7 6.9 83 100-190 8-91 (108)
31 3fgh_A Transcription factor A, 99.8 1.7E-19 5.7E-24 125.5 6.3 66 107-180 1-66 (67)
32 1v63_A Nucleolar transcription 99.8 8.8E-19 3E-23 131.8 7.9 80 104-189 4-83 (101)
33 2d7l_A WD repeat and HMG-box D 99.8 4.1E-19 1.4E-23 128.6 5.7 62 104-166 1-63 (81)
34 2yrq_A High mobility group pro 99.8 1.6E-18 5.4E-23 141.5 8.3 83 100-185 7-90 (173)
35 2cto_A Novel protein; high mob 99.7 1.8E-18 6.2E-23 128.4 6.1 69 103-174 5-76 (93)
36 2yuk_A Myeloid/lymphoid or mix 99.7 3.5E-19 1.2E-23 131.4 0.2 69 101-174 15-85 (90)
37 3tmm_A Transcription factor A, 99.7 7.7E-18 2.6E-22 144.4 5.1 81 103-187 36-116 (238)
38 3tq6_A Transcription factor A, 99.7 1.1E-17 3.6E-22 141.4 5.7 78 106-187 7-84 (214)
39 2gzk_A Sex-determining region 99.6 7E-16 2.4E-20 124.0 9.3 74 106-183 2-75 (159)
40 1aab_A High mobility group pro 99.0 3E-10 1E-14 81.6 4.1 70 23-95 3-81 (83)
41 1wgf_A Upstream binding factor 99.0 8E-10 2.7E-14 80.7 6.2 66 23-91 16-88 (90)
42 1l8y_A Upstream binding factor 99.0 2.9E-10 1E-14 83.6 3.7 64 27-93 4-73 (91)
43 2eqz_A High mobility group pro 98.9 4.1E-10 1.4E-14 81.5 3.4 66 23-91 11-85 (86)
44 2lhj_A High mobility group pro 98.9 2.8E-10 9.6E-15 84.2 0.8 83 1-91 1-92 (97)
45 1cg7_A Protein (NON histone pr 98.8 1.6E-09 5.4E-14 79.6 3.2 66 23-91 16-88 (93)
46 2co9_A Thymus high mobility gr 98.8 3.4E-09 1.2E-13 79.2 3.4 66 24-92 14-86 (102)
47 1hme_A High mobility group pro 98.7 6E-09 2.1E-13 73.5 3.9 67 23-92 2-75 (77)
48 2e6o_A HMG box-containing prot 98.7 2.3E-08 7.7E-13 72.4 6.1 65 24-91 14-85 (87)
49 2cs1_A PMS1 protein homolog 1; 98.7 1.1E-08 3.6E-13 74.9 3.4 67 24-93 4-77 (92)
50 1k99_A Upstream binding factor 98.7 2E-08 6.7E-13 74.7 4.7 67 23-92 6-79 (99)
51 1hry_A Human SRY; DNA, DNA-bin 98.6 2.6E-08 9E-13 70.0 4.4 65 25-92 2-73 (76)
52 1ckt_A High mobility group 1 p 98.6 1.6E-08 5.5E-13 70.1 3.0 61 28-91 2-71 (71)
53 1wz6_A HMG-box transcription f 98.6 2.8E-08 9.7E-13 70.9 4.4 67 23-92 3-76 (82)
54 2crj_A SWI/SNF-related matrix- 98.6 1.5E-08 5.2E-13 74.1 2.4 68 23-93 3-77 (92)
55 4euw_A Transcription factor SO 98.6 4.5E-08 1.5E-12 73.6 4.4 69 22-93 24-99 (106)
56 3fgh_A Transcription factor A, 98.6 2E-08 6.7E-13 69.1 2.2 58 28-91 3-66 (67)
57 2lef_A LEF-1 HMG, protein (lym 98.6 6.4E-08 2.2E-12 69.7 4.9 58 34-92 7-71 (86)
58 1v63_A Nucleolar transcription 98.5 3.1E-08 1E-12 74.0 2.3 62 27-92 8-75 (101)
59 1v64_A Nucleolar transcription 98.5 4.9E-08 1.7E-12 73.7 3.3 67 24-93 13-83 (108)
60 1j46_A SRY, sex-determining re 98.5 8.5E-08 2.9E-12 69.0 4.0 65 25-92 2-73 (85)
61 4a3n_A Transcription factor SO 98.5 1.2E-07 4E-12 65.5 4.4 56 35-91 8-70 (71)
62 1wxl_A Single-strand recogniti 98.5 7.2E-08 2.5E-12 67.4 3.3 63 25-92 1-70 (73)
63 1gt0_D Transcription factor SO 98.5 1.6E-07 5.4E-12 66.6 4.9 62 28-92 3-71 (80)
64 3f27_D Transcription factor SO 98.5 1.4E-07 4.9E-12 67.2 4.4 64 26-92 5-75 (83)
65 2d7l_A WD repeat and HMG-box D 98.4 3.6E-07 1.2E-11 65.6 5.1 55 24-80 2-64 (81)
66 2cto_A Novel protein; high mob 98.3 4E-07 1.4E-11 67.1 4.6 63 24-90 7-78 (93)
67 3u2b_C Transcription factor SO 98.3 5E-07 1.7E-11 63.7 4.8 57 35-92 8-71 (79)
68 1i11_A Transcription factor SO 98.3 5.1E-07 1.8E-11 64.1 4.4 63 27-92 4-73 (81)
69 2yuk_A Myeloid/lymphoid or mix 98.3 1.7E-07 5.8E-12 68.7 1.6 62 23-87 18-84 (90)
70 3nm9_A HMG-D, high mobility gr 98.3 2.1E-07 7E-12 65.0 1.3 61 26-91 2-69 (73)
71 2qgu_A Probable signal peptide 51.1 14 0.00047 30.1 3.9 48 132-183 70-119 (211)
72 3ukw_C Bimax1 peptide; arm rep 29.6 20 0.00068 19.5 1.0 10 7-16 18-27 (28)
No 1
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.97 E-value=4.7e-32 Score=221.97 Aligned_cols=154 Identities=35% Similarity=0.529 Sum_probs=135.0
Q ss_pred CcccccccCCCCchhhHH-----HHhhccCCcc---chhh-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCCCC
Q 027712 23 TSSATLMRGRDGSAFARC-----EECNKNVPVA---LISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTE 93 (220)
Q Consensus 23 ~~~~~~~r~~d~saf~~~-----e~~~~~~p~a---~~~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~~~ 93 (220)
++|+.++|.. |||.+| ..+...+|.+ +.++ +.||+.|+.||+.||++|+++|+.++ ++|.++|..|.+
T Consensus 11 ~dp~~PKrp~--say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k-~~y~~e~~~y~~ 87 (173)
T 2yrq_A 11 GDPKKPRGKM--SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADK-ARYEREMKTYIP 87 (173)
T ss_dssp CCSSSCCCCC--CHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH-HHTHHHHHHCCC
T ss_pred CCCCCCCCCC--CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHhhhhhh
Confidence 3567788776 667655 3446678874 4555 89999999999999999999999999 899999999988
Q ss_pred hhHHhhhccCCCCCCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHH
Q 027712 94 PRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKA 173 (220)
Q Consensus 94 ~k~k~~kk~~kd~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e 173 (220)
+.+++ +++.+||++||||+|||||||+++|..++.+||++ ++.+|+++||++|++||+++|++|.++|..++++|..+
T Consensus 88 ~~~~~-kk~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~-~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~ 165 (173)
T 2yrq_A 88 PKGET-KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKD 165 (173)
T ss_dssp CCCCS-SCSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSSS-CHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred hhhhh-cccccCCccccCcccHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 76642 45668999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hccCcCccccC
Q 027712 174 MEGNGDYNEVE 184 (220)
Q Consensus 174 ~~~~~~y~~~~ 184 (220)
| ..|+.++
T Consensus 166 ~---~~y~~k~ 173 (173)
T 2yrq_A 166 I---AAYRAKG 173 (173)
T ss_dssp H---HHHHCCC
T ss_pred H---HHHHhcC
Confidence 9 8887653
No 2
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.97 E-value=1.6e-30 Score=209.83 Aligned_cols=148 Identities=30% Similarity=0.473 Sum_probs=127.9
Q ss_pred ccccCCCCchhhHH--H-Hhh--ccCCccc-hhh-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCCCChhHHhh
Q 027712 27 TLMRGRDGSAFARC--E-ECN--KNVPVAL-ISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRL 99 (220)
Q Consensus 27 ~~~r~~d~saf~~~--e-~~~--~~~p~a~-~~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~~~~k~k~~ 99 (220)
.++|.. +||.++ + .+. ..+|... .++ +.||..|+.||+.||++|+++|+.++ ++|..++..|....++ +
T Consensus 4 ~~Krp~--~af~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k-~~y~~~~~~y~~~k~~-~ 79 (159)
T 2gzk_A 4 RVKRPM--NAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQ-AMHREKYPNYKYRKGE-T 79 (159)
T ss_dssp CCCCCC--CHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH-HHHHHHCSSCSCCCCC-C
T ss_pred CCCCCC--cHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhhHHHhccHHHHHHHHH-HHHHHHhhcccccccc-c
Confidence 455554 667654 2 222 6677743 333 89999999999999999999999999 8999999999876553 2
Q ss_pred hccCCCCCCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccCcC
Q 027712 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGD 179 (220)
Q Consensus 100 kk~~kd~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~~ 179 (220)
+++.+||+.||||+|||++||.++|..++.+||++ ++.+|+++||++|++||+++|++|.++|.+++++|..+| ..
T Consensus 80 kk~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~-~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~---~~ 155 (159)
T 2gzk_A 80 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDI---AA 155 (159)
T ss_dssp GGGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCC-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH---HH
T ss_pred cccccccccccccccccchhhHhhHHHHHHhCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 45678999999999999999999999999999999 999999999999999999999999999999999999999 88
Q ss_pred ccc
Q 027712 180 YNE 182 (220)
Q Consensus 180 y~~ 182 (220)
|+.
T Consensus 156 y~~ 158 (159)
T 2gzk_A 156 YRA 158 (159)
T ss_dssp HHC
T ss_pred Hhc
Confidence 865
No 3
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.95 E-value=1.2e-29 Score=218.01 Aligned_cols=153 Identities=19% Similarity=0.246 Sum_probs=126.6
Q ss_pred CcccccccCCCCchhhHH-----HHhhccCCccch-hh-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCCC---
Q 027712 23 TSSATLMRGRDGSAFARC-----EECNKNVPVALI-SM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTST--- 92 (220)
Q Consensus 23 ~~~~~~~r~~d~saf~~~-----e~~~~~~p~a~~-~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~~--- 92 (220)
++|+.|+|.. |||.+| ..+...+|.... ++ +.||++|+.||+.||++|+++|+.++ ++|+++|..|.
T Consensus 37 ~~p~~PKrP~--say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k-~~y~~e~~~y~~~~ 113 (238)
T 3tmm_A 37 VLASCPKKPV--SSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW-QVYKEEISRFKEQL 113 (238)
T ss_dssp HHHHSCCCCC--CHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHC
T ss_pred CCCCCCCCCC--CHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHHHhcC
Confidence 4567788765 677654 344667777653 34 89999999999999999999999999 89999999884
Q ss_pred -Chh----------------HHhhhccCCCCCCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhh
Q 027712 93 -EPR----------------AKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEE 155 (220)
Q Consensus 93 -~~k----------------~k~~kk~~kd~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~ee 155 (220)
+.. +.++++..+|+++||||+|||||||+++|..++..|| .+|++.||++|++|++++
T Consensus 114 ~p~~~~~~~~~~~~k~~krk~~~kkk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~e 188 (238)
T 3tmm_A 114 TPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSE 188 (238)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHTTTSCCSSH-----HHHHHHHHHHHHTCCTTT
T ss_pred CHHHHHHHHHHHhhhhhhhhcccchhhhcccCCCCCCCcHHHHHHHHHHHHHhccCH-----HHHHHHHHHHHHhCCHHH
Confidence 211 1112334579999999999999999999999876554 479999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhccCcCccccCcc
Q 027712 156 KKPYLDKAAELKADYSKAMEGNGDYNEVEDK 186 (220)
Q Consensus 156 K~~Y~~~A~~~k~~Y~~e~~~~~~y~~~~~~ 186 (220)
|++|.++|.+++++|+.+| ..|+.++++
T Consensus 189 K~~Y~~~A~~~k~~Y~~e~---~~y~~k~~~ 216 (238)
T 3tmm_A 189 KELYIQHAKEDETRYHNEM---KSWEEQMIE 216 (238)
T ss_dssp THHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHhCcc
Confidence 9999999999999999999 999987654
No 4
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.95 E-value=2e-29 Score=213.49 Aligned_cols=153 Identities=20% Similarity=0.273 Sum_probs=125.6
Q ss_pred CcccccccCCCCchhhHH-----HHhhccCCccch-hh-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCCCC--
Q 027712 23 TSSATLMRGRDGSAFARC-----EECNKNVPVALI-SM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTE-- 93 (220)
Q Consensus 23 ~~~~~~~r~~d~saf~~~-----e~~~~~~p~a~~-~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~~~-- 93 (220)
++|+.|+|.. |||.+| ..+...+|.... ++ +.||+.|+.||+.||++|+++|+.++ ++|.++|..|..
T Consensus 5 ~~p~~PKrP~--say~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k-~~y~~e~~~y~~~~ 81 (214)
T 3tq6_A 5 VLASCPKKPV--SSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW-QVYKEEISRFKEQL 81 (214)
T ss_dssp HHHHSCCCCC--CHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHC
T ss_pred CCCCCCCCCC--CHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCHHhhhHHHHHHHHHH-HHHHHHhhhhcccC
Confidence 3456677655 667654 344666777654 33 89999999999999999999999999 899999998841
Q ss_pred -h-----------------hHHhhhccCCCCCCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhh
Q 027712 94 -P-----------------RAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEE 155 (220)
Q Consensus 94 -~-----------------k~k~~kk~~kd~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~ee 155 (220)
+ ++.++++..+||+.||||+||||+||+++|..++..|| .+|+++||++|++||+++
T Consensus 82 tp~q~~~~~~~~~~~~~krk~~kkkk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~e 156 (214)
T 3tq6_A 82 TPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSE 156 (214)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHTTTSSCSSH-----HHHHHHHHHHHHTCCHHH
T ss_pred CHHHHHHHHHHHHHHHhhhcchhhhhhhccccCcccccchhhhhHHHHHHhhccCCH-----HHHHHHHHHHHHcCCHHH
Confidence 1 11112334579999999999999999999999876544 489999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhccCcCccccCcc
Q 027712 156 KKPYLDKAAELKADYSKAMEGNGDYNEVEDK 186 (220)
Q Consensus 156 K~~Y~~~A~~~k~~Y~~e~~~~~~y~~~~~~ 186 (220)
|++|.++|.+++++|..+| ..|+.++++
T Consensus 157 K~~Y~~~A~~~k~~Y~~e~---~~y~~~~~~ 184 (214)
T 3tq6_A 157 KELYIQHAKEDETRYHNEM---KSWEEQMIE 184 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHhCcc
Confidence 9999999999999999999 999988655
No 5
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.88 E-value=5.6e-23 Score=154.19 Aligned_cols=83 Identities=22% Similarity=0.479 Sum_probs=79.4
Q ss_pred hccCCCCCCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccCcC
Q 027712 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGD 179 (220)
Q Consensus 100 kk~~kd~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~~ 179 (220)
+++.+||++||||+|||||||++.|..++.+||++ ++.+|+++||++|++||+++|++|.++|.+++++|..+| ..
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~---~~ 77 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEM-SNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNL---AR 77 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTS-CSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHH---GG
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 45678999999999999999999999999999999 899999999999999999999999999999999999999 99
Q ss_pred ccccCcc
Q 027712 180 YNEVEDK 186 (220)
Q Consensus 180 y~~~~~~ 186 (220)
|...+++
T Consensus 78 y~~~~P~ 84 (99)
T 1k99_A 78 FREDHPD 84 (99)
T ss_dssp GGGCCCC
T ss_pred HHHHCCC
Confidence 9998875
No 6
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.87 E-value=2.7e-22 Score=143.23 Aligned_cols=76 Identities=45% Similarity=0.834 Sum_probs=73.0
Q ss_pred CCCCCCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccCcCccc
Q 027712 103 DSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNE 182 (220)
Q Consensus 103 ~kd~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~~y~~ 182 (220)
++||++||||+|||++|++++|..++..||++ ++.+|+++||++|++||+++|++|.++|..++.+|..+| ..|+.
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~---~~y~~ 76 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDI---AAYRA 76 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTTC-CHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHH---TTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH---HHHhc
Confidence 37899999999999999999999999999999 899999999999999999999999999999999999999 88865
No 7
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=3.1e-22 Score=146.14 Aligned_cols=79 Identities=29% Similarity=0.539 Sum_probs=73.5
Q ss_pred hccCCCCCCCCCCCCchhhHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccCc
Q 027712 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNG 178 (220)
Q Consensus 100 kk~~kd~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~-~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~ 178 (220)
++..+||++||||+||||+||+++|..++.+||++. ++.+|+++||++|++||+++|++|.++|.+++++|..+| .
T Consensus 7 ~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~---~ 83 (86)
T 2eqz_A 7 GMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREM---K 83 (86)
T ss_dssp SCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHH---H
T ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 456789999999999999999999999999999983 269999999999999999999999999999999999999 7
Q ss_pred Ccc
Q 027712 179 DYN 181 (220)
Q Consensus 179 ~y~ 181 (220)
.|+
T Consensus 84 ~Y~ 86 (86)
T 2eqz_A 84 DYG 86 (86)
T ss_dssp HHC
T ss_pred HcC
Confidence 774
No 8
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.86 E-value=2.7e-22 Score=151.13 Aligned_cols=83 Identities=28% Similarity=0.524 Sum_probs=78.2
Q ss_pred hccCCCCCCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccCcC
Q 027712 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGD 179 (220)
Q Consensus 100 kk~~kd~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~~ 179 (220)
+++.+||++||||+||||||++++|..++..||++ ++.+|+++||++|++||+++|++|.++|.+++++|..+| ..
T Consensus 9 kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~---~~ 84 (102)
T 2co9_A 9 KKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNA-TFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQL---AA 84 (102)
T ss_dssp CSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTS-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH---HH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 45678999999999999999999999999999999 899999999999999999999999999999999999999 88
Q ss_pred ccccCcc
Q 027712 180 YNEVEDK 186 (220)
Q Consensus 180 y~~~~~~ 186 (220)
|+.....
T Consensus 85 Y~~~~~~ 91 (102)
T 2co9_A 85 YRASLVS 91 (102)
T ss_dssp HHHHHTS
T ss_pred HHhhccc
Confidence 8876554
No 9
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.86 E-value=6.1e-22 Score=143.51 Aligned_cols=79 Identities=30% Similarity=0.556 Sum_probs=73.7
Q ss_pred CCCCCCCCCCCCchhhHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccCcCcc
Q 027712 103 DSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYN 181 (220)
Q Consensus 103 ~kd~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~-~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~~y~ 181 (220)
++||++||||+||||+||+++|..++..||++. ++.+|+++||++|++||+++|++|.++|.+++++|..+| ..|+
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~---~~y~ 78 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREM---KTYI 78 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHT---TTCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH---HHHh
Confidence 479999999999999999999999999999983 258999999999999999999999999999999999999 8887
Q ss_pred ccC
Q 027712 182 EVE 184 (220)
Q Consensus 182 ~~~ 184 (220)
...
T Consensus 79 ~~~ 81 (83)
T 1aab_A 79 PPK 81 (83)
T ss_dssp CCS
T ss_pred ccC
Confidence 753
No 10
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.85 E-value=1.7e-21 Score=138.77 Aligned_cols=73 Identities=27% Similarity=0.514 Sum_probs=68.5
Q ss_pred CCCCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccCcCcc
Q 027712 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYN 181 (220)
Q Consensus 105 d~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~~y~ 181 (220)
||++||||+||||||++++|..++..||++ ++.+|+++||++|++||+++|++|.++|..++++|..++ .+|+
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~---~~Yk 73 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRM-RNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKY---PNYK 73 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCC-SSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHS---SSCC
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHC---CCCC
Confidence 589999999999999999999999999999 899999999999999999999999999999999999999 5554
No 11
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.85 E-value=1.3e-21 Score=143.14 Aligned_cols=77 Identities=30% Similarity=0.516 Sum_probs=73.2
Q ss_pred ccCCCCCCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccCcCc
Q 027712 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDY 180 (220)
Q Consensus 101 k~~kd~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~~y 180 (220)
+..+|+++||||+||||||++++|..++.+||++ ++.+|+++||++|++||+++|++|.++|++++++|..++ ++|
T Consensus 10 ~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~---P~Y 85 (87)
T 2e6o_A 10 VSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGK-DNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLN---PDC 85 (87)
T ss_dssp CCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---CCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHC---cCC
Confidence 4678999999999999999999999999999999 899999999999999999999999999999999999999 555
Q ss_pred c
Q 027712 181 N 181 (220)
Q Consensus 181 ~ 181 (220)
+
T Consensus 86 k 86 (87)
T 2e6o_A 86 W 86 (87)
T ss_dssp C
T ss_pred C
Confidence 4
No 12
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.85 E-value=1.5e-21 Score=144.23 Aligned_cols=77 Identities=31% Similarity=0.591 Sum_probs=73.6
Q ss_pred CCCCCCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccCcCccc
Q 027712 103 DSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNE 182 (220)
Q Consensus 103 ~kd~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~~y~~ 182 (220)
.+||++||||+||||||++++|..++..||++ ++.+|+++||++|++||+++|++|.++|.+++++|..+| ..|+.
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~---~~Y~~ 77 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPDL-PFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKEL---WAYQQ 77 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTTC-CHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHH---HHHHS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH---HHHHc
Confidence 36899999999999999999999999999999 899999999999999999999999999999999999999 77776
Q ss_pred c
Q 027712 183 V 183 (220)
Q Consensus 183 ~ 183 (220)
.
T Consensus 78 ~ 78 (92)
T 2crj_A 78 S 78 (92)
T ss_dssp S
T ss_pred c
Confidence 4
No 13
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-21 Score=144.82 Aligned_cols=79 Identities=29% Similarity=0.442 Sum_probs=75.6
Q ss_pred CCCCCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccCcCcccc
Q 027712 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEV 183 (220)
Q Consensus 104 kd~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~~y~~~ 183 (220)
.++++||||+||||+|++++|..++.+||++ ++.+|+++||++|++||+++|++|.++|.+++++|..+| ..|+..
T Consensus 3 ~~p~~pKrP~say~lF~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~---~~y~~~ 78 (92)
T 2cs1_A 3 SGSSGIKKPMSASALFVQDHRPQFLIENPKT-SLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQM---KRAIEQ 78 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHHCCSS-CHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHH---HHHTST
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHh
Confidence 5789999999999999999999999999999 899999999999999999999999999999999999999 999887
Q ss_pred Ccc
Q 027712 184 EDK 186 (220)
Q Consensus 184 ~~~ 186 (220)
++.
T Consensus 79 ~~~ 81 (92)
T 2cs1_A 79 ESQ 81 (92)
T ss_dssp TTC
T ss_pred CCC
Confidence 664
No 14
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.85 E-value=3.3e-22 Score=147.38 Aligned_cols=75 Identities=25% Similarity=0.534 Sum_probs=71.9
Q ss_pred hhccCCCCCCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHh
Q 027712 99 LRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174 (220)
Q Consensus 99 ~kk~~kd~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~ 174 (220)
.+++.+||++||||+|||||||+++|..++..||++ ++.+|+++||++|++||+++|++|.++|.+++++|..+|
T Consensus 11 ~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~ 85 (90)
T 1wgf_A 11 QEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPEL-SESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKS 85 (90)
T ss_dssp SCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCC
T ss_pred cCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778999999999999999999999999999999 999999999999999999999999999999999999988
No 15
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.84 E-value=1.7e-21 Score=137.98 Aligned_cols=73 Identities=40% Similarity=0.679 Sum_probs=69.1
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccCcCccccC
Q 027712 106 SNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVE 184 (220)
Q Consensus 106 ~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~~y~~~~ 184 (220)
+++||||+||||+||+++|..++.+||++ ++.+|+++||++|++||+ |++|.++|.+++++|..+| ..|+.++
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~---~~Y~~kg 73 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPGI-KVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAV---KEFEANG 73 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSSC-CHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHH---HHHHHCC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHH---HHHHhcC
Confidence 47899999999999999999999999999 899999999999999997 9999999999999999999 8887653
No 16
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.84 E-value=2.2e-22 Score=149.12 Aligned_cols=81 Identities=37% Similarity=0.589 Sum_probs=76.4
Q ss_pred hccCCCCCCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccCcC
Q 027712 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGD 179 (220)
Q Consensus 100 kk~~kd~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~~ 179 (220)
++..+||++||||+|||+||++++|..++.+||++ ++.+|+++||++|++||+++|++|.++|.+++++|..+| ..
T Consensus 12 ~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~---~~ 87 (93)
T 1cg7_A 12 TRKKKDPNAPKRALSAYMFFANENRDIVRSENPDI-TFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEK---EL 87 (93)
T ss_dssp CCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTS-CHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHH---HH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 45678999999999999999999999999999999 899999999999999999999999999999999999999 88
Q ss_pred ccccC
Q 027712 180 YNEVE 184 (220)
Q Consensus 180 y~~~~ 184 (220)
|+.++
T Consensus 88 Y~~~~ 92 (93)
T 1cg7_A 88 YNATL 92 (93)
T ss_dssp HHHHT
T ss_pred HHHcc
Confidence 87653
No 17
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.83 E-value=5.2e-22 Score=148.12 Aligned_cols=80 Identities=31% Similarity=0.613 Sum_probs=75.4
Q ss_pred hccCCCCCCCCCCCCchhhHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccC
Q 027712 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKG--VTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGN 177 (220)
Q Consensus 100 kk~~kd~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~--~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~ 177 (220)
++..+||++||||+||||||++++|..++.+||++ + +.+|+++||++|++||+++|++|.++|.+++++|..+|
T Consensus 14 ~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~-~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~--- 89 (97)
T 2lhj_A 14 RKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEI-AKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYEREK--- 89 (97)
T ss_dssp TCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTS-TTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHHH---
T ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH---
Confidence 45678999999999999999999999999999998 7 89999999999999999999999999999999999999
Q ss_pred cCcccc
Q 027712 178 GDYNEV 183 (220)
Q Consensus 178 ~~y~~~ 183 (220)
..|+.+
T Consensus 90 ~~y~~~ 95 (97)
T 2lhj_A 90 AEYAQR 95 (97)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 887653
No 18
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.83 E-value=8.1e-21 Score=134.46 Aligned_cols=72 Identities=39% Similarity=0.665 Sum_probs=69.0
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccCcCcccc
Q 027712 106 SNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEV 183 (220)
Q Consensus 106 ~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~~y~~~ 183 (220)
|++||||+|||++|++++|..++..||++ ++.+|+++||++|++| ++|++|.++|.+++++|..+| ..|+.+
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~---~~Y~~~ 72 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGI-KVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEM---RNYKPE 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTC-CHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTT---GGGTTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHH---HHHHcc
Confidence 68999999999999999999999999999 8999999999999999 889999999999999999999 888764
No 19
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.83 E-value=1.5e-20 Score=136.83 Aligned_cols=75 Identities=27% Similarity=0.479 Sum_probs=70.5
Q ss_pred CCCCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccCcCcccc
Q 027712 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEV 183 (220)
Q Consensus 105 d~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~~y~~~ 183 (220)
.|++||||+||||||++++|..++..||++ ++.+|+++||++|++||+++|++|.++|.+++++|..++ .+|+..
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~---~~Yk~~ 75 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPRM-RNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKY---PNYKYR 75 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTTS-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC---TTCCCC
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC---cccccC
Confidence 378999999999999999999999999999 899999999999999999999999999999999999999 555543
No 20
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.83 E-value=1.1e-20 Score=132.76 Aligned_cols=70 Identities=33% Similarity=0.623 Sum_probs=66.0
Q ss_pred CCCCCCCchhhHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccCcCc
Q 027712 108 KPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDY 180 (220)
Q Consensus 108 ~PKrP~sAy~lF~~e~r~~~k~~~P~~~-~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~~y 180 (220)
+||||+|||++|++++|..++..||++. ++.+|+++||++|++||+++|++|.++|.+++++|..+| ..|
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~---~~Y 71 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREM---KTY 71 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHH---TTC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHH---HhC
Confidence 5999999999999999999999999983 249999999999999999999999999999999999999 776
No 21
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.83 E-value=7.5e-21 Score=137.44 Aligned_cols=77 Identities=31% Similarity=0.479 Sum_probs=72.6
Q ss_pred CCCCCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccCcCcccc
Q 027712 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEV 183 (220)
Q Consensus 104 kd~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~~y~~~ 183 (220)
.++++||||+||||||++++|..++.+||++ ++.+|+++||++|++||+++|++|.++|.+++++|..+| ..|+..
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~---~~yk~~ 78 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPRL-DNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKAN---PGYRSG 78 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSSS-CTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSC---SSCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHh---HHhhcC
Confidence 4788999999999999999999999999999 899999999999999999999999999999999999999 777654
Q ss_pred C
Q 027712 184 E 184 (220)
Q Consensus 184 ~ 184 (220)
.
T Consensus 79 p 79 (82)
T 1wz6_A 79 P 79 (82)
T ss_dssp T
T ss_pred C
Confidence 3
No 22
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.83 E-value=8.4e-21 Score=133.07 Aligned_cols=71 Identities=28% Similarity=0.555 Sum_probs=63.1
Q ss_pred CCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccCcCcc
Q 027712 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYN 181 (220)
Q Consensus 107 ~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~~y~ 181 (220)
+.||||+||||+|++++|..++..||++ ++.+|+++||++|++||+++|++|.++|..++++|..++ +.|+
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~---~~YK 71 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPDL-HNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDH---PNYK 71 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTC---C---
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHC---cCcC
Confidence 4689999999999999999999999999 899999999999999999999999999999999999999 6664
No 23
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.82 E-value=2.2e-20 Score=135.05 Aligned_cols=74 Identities=27% Similarity=0.521 Sum_probs=67.0
Q ss_pred CCCCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccCcCccc
Q 027712 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNE 182 (220)
Q Consensus 105 d~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~~y~~ 182 (220)
.++.||||+||||||++++|..++..||++ ++.+|+++||++|++||+++|++|.++|.+++++|..+| ..|+-
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~---~~Yky 76 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDL-HNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDH---PNYKY 76 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---TTCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHC---CCCee
Confidence 467899999999999999999999999999 899999999999999999999999999999999999999 55544
No 24
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.82 E-value=3.3e-20 Score=133.33 Aligned_cols=73 Identities=29% Similarity=0.562 Sum_probs=68.9
Q ss_pred CCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccCcCcccc
Q 027712 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEV 183 (220)
Q Consensus 107 ~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~~y~~~ 183 (220)
+.||||+||||+|++++|..++..||++ ++.+|+++||++|++||+++|++|.++|..++++|..+| ..|+..
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~---~~Yk~~ 73 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKM-HNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEH---PDYKYR 73 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTS-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC---TTCCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHC---cccccC
Confidence 4799999999999999999999999999 899999999999999999999999999999999999999 666544
No 25
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.82 E-value=3.4e-20 Score=140.61 Aligned_cols=77 Identities=23% Similarity=0.506 Sum_probs=68.9
Q ss_pred cCCCCCCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccCcCcc
Q 027712 102 KDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYN 181 (220)
Q Consensus 102 ~~kd~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~~y~ 181 (220)
..++++.||||+|||||||+++|..++..||++ ++.+|+++||++|+.||+++|++|.++|.+++++|..+| ..|+
T Consensus 23 ~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~---~~Yk 98 (106)
T 4euw_A 23 SSKNKPHVKRPMNAFMVWAQAARRKLADQYPHL-HNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDH---PDYK 98 (106)
T ss_dssp -----CCCCCCCCHHHHHHHHHHHHHHHHCTTS-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHC---TTCC
T ss_pred ccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHh---hhcC
Confidence 467899999999999999999999999999999 899999999999999999999999999999999999999 5554
Q ss_pred c
Q 027712 182 E 182 (220)
Q Consensus 182 ~ 182 (220)
-
T Consensus 99 y 99 (106)
T 4euw_A 99 Y 99 (106)
T ss_dssp C
T ss_pred c
Confidence 4
No 26
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.82 E-value=3.5e-20 Score=132.72 Aligned_cols=70 Identities=26% Similarity=0.478 Sum_probs=66.9
Q ss_pred CCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccC
Q 027712 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGN 177 (220)
Q Consensus 107 ~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~ 177 (220)
++||||+||||||++++|..++..||++ ++.+|+++||++|++||+++|++|.++|.+++++|..++|+|
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Y 70 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDM-HNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDY 70 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 5799999999999999999999999999 899999999999999999999999999999999999999444
No 27
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.81 E-value=6.5e-20 Score=133.70 Aligned_cols=73 Identities=18% Similarity=0.348 Sum_probs=68.6
Q ss_pred CCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccCcCcccc
Q 027712 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEV 183 (220)
Q Consensus 107 ~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~~y~~~ 183 (220)
+.||||+||||||++++|..++.+||++ ++.+|+++||++|++||+++|++|.++|..++++|..+| ..|+..
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~---~~Yk~~ 73 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTLK-ESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLY---PGWSAR 73 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSCC-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHS---TTCCSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHc---ccccCC
Confidence 3699999999999999999999999999 899999999999999999999999999999999999999 666543
No 28
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.81 E-value=4.1e-20 Score=133.21 Aligned_cols=71 Identities=32% Similarity=0.538 Sum_probs=67.4
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccC
Q 027712 106 SNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGN 177 (220)
Q Consensus 106 ~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~ 177 (220)
++.||||+||||||++++|..++..||++ ++.+|+++||++|++||+++|++|.++|++++.+|..++|+|
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Y 72 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDM-HNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDY 72 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSC-CHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 47899999999999999999999999999 899999999999999999999999999999999999999544
No 29
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.81 E-value=6.6e-20 Score=135.39 Aligned_cols=76 Identities=20% Similarity=0.326 Sum_probs=71.6
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccCcCccccCc
Q 027712 106 SNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVED 185 (220)
Q Consensus 106 ~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~~y~~~~~ 185 (220)
.+.||||+|||++|++++|..++..||+ ++.+|++.||++|++||+++|++|+++|..++++|+++| ..|+.++.
T Consensus 2 ~~kPKrP~SAy~lf~~~~r~~~k~~~p~--~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm---~~Y~~~~~ 76 (91)
T 1l8y_A 2 GKLPESPKRAEEIWQQSVIGDYLARFKN--DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYEREL---SEMRAPPA 76 (91)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHHTTS--THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHH---HTTSCGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH---HHHHcccc
Confidence 3689999999999999999999999998 689999999999999999999999999999999999999 99988655
Q ss_pred c
Q 027712 186 K 186 (220)
Q Consensus 186 ~ 186 (220)
.
T Consensus 77 ~ 77 (91)
T 1l8y_A 77 A 77 (91)
T ss_dssp S
T ss_pred c
Confidence 4
No 30
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.80 E-value=4.2e-20 Score=140.67 Aligned_cols=83 Identities=24% Similarity=0.430 Sum_probs=75.9
Q ss_pred hccCCCCCCC-CCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccCc
Q 027712 100 RKKDSDSNKP-KRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNG 178 (220)
Q Consensus 100 kk~~kd~~~P-KrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~ 178 (220)
.++.+|++.| |||+|||++||+++|..++ ++ ++.+|+++||++|++||+++|++|.++|..++++|..+| .
T Consensus 8 ~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~~-~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~---~ 79 (108)
T 1v64_A 8 QLKDKFDGRPTKPPPNSYSLYCAELMANMK----DV-PSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVEL---L 79 (108)
T ss_dssp CSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----TS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH---H
T ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHh----CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 4567899999 9999999999999999887 56 899999999999999999999999999999999999999 9
Q ss_pred CccccCcccchh
Q 027712 179 DYNEVEDKADNE 190 (220)
Q Consensus 179 ~y~~~~~~~~~~ 190 (220)
.|....+..+.+
T Consensus 80 ~Y~~~~~~~~r~ 91 (108)
T 1v64_A 80 RFLESLPEEEQQ 91 (108)
T ss_dssp HHHHHSCHHHHH
T ss_pred HHHhhCCHHHHH
Confidence 999988765444
No 31
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.78 E-value=1.7e-19 Score=125.54 Aligned_cols=66 Identities=33% Similarity=0.601 Sum_probs=61.6
Q ss_pred CCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccCcCc
Q 027712 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDY 180 (220)
Q Consensus 107 ~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~~y 180 (220)
|.||||+|||++||+++|..++..|| .+|+++||++|++||+++|++|.++|.+++++|..+| ..|
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~---~~y 66 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEM---KSW 66 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH---HHC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH-----HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHH---HHh
Confidence 57999999999999999999987654 6899999999999999999999999999999999999 766
No 32
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.76 E-value=8.8e-19 Score=131.81 Aligned_cols=80 Identities=16% Similarity=0.285 Sum_probs=69.7
Q ss_pred CCCCCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccCcCcccc
Q 027712 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEV 183 (220)
Q Consensus 104 kd~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~~y~~~ 183 (220)
...++||||+||||+||++++. ...++++ ++.||+++||++|+.|++++|++|.++|.+++++|..+| ..|...
T Consensus 4 ~~~~~PKrP~say~lF~~e~~~--~p~~~~~-~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~---~~Y~~~ 77 (101)
T 1v63_A 4 GSSGPKKPPMNGYQKFSQELLS--NGELNHL-PLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHL---DLWVKS 77 (101)
T ss_dssp CCCSSCCCCSSSHHHHHHHHHH--HCTTTTS-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHh--CCCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH---HHHHhh
Confidence 3467899999999999999974 2234556 788999999999999999999999999999999999999 999998
Q ss_pred Ccccch
Q 027712 184 EDKADN 189 (220)
Q Consensus 184 ~~~~~~ 189 (220)
.+..+.
T Consensus 78 ~~~~~~ 83 (101)
T 1v63_A 78 LSPQDR 83 (101)
T ss_dssp SCTTHH
T ss_pred CCHHHH
Confidence 876443
No 33
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=4.1e-19 Score=128.65 Aligned_cols=62 Identities=24% Similarity=0.424 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCchhhHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHhhcCChhhhHHHHHHHHHH
Q 027712 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKG-VTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166 (220)
Q Consensus 104 kd~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~-~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~ 166 (220)
.+++.||||+||||+||+++|..|+.+||++ + +.+|+++||++|++||+++|++|.++|..+
T Consensus 1 ~~~~~PKRP~say~lF~~e~R~~ik~~~P~~-~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d 63 (81)
T 2d7l_A 1 GSSGSSGRPKTGFQMWLEENRSNILSDNPDF-SDEADIIKEGMIRFRVLSTEERKVWANKAKGE 63 (81)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHHHCTTC-CSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999 7 999999999999999999999999999877
No 34
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.6e-18 Score=141.50 Aligned_cols=83 Identities=29% Similarity=0.516 Sum_probs=76.2
Q ss_pred hccCCCCCCCCCCCCchhhHHHHHHHHHHhhCCCC-CChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccCc
Q 027712 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDS-KGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNG 178 (220)
Q Consensus 100 kk~~kd~~~PKrP~sAy~lF~~e~r~~~k~~~P~~-~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~ 178 (220)
++..+||++||||+|||++||+++|..++..||++ .++.+|+++||++|++||+++|++|.++|..++++|..+| .
T Consensus 7 k~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~---~ 83 (173)
T 2yrq_A 7 GMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREM---K 83 (173)
T ss_dssp SSSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHH---H
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHh---h
Confidence 34568999999999999999999999999999994 2789999999999999999999999999999999999999 8
Q ss_pred CccccCc
Q 027712 179 DYNEVED 185 (220)
Q Consensus 179 ~y~~~~~ 185 (220)
.|.....
T Consensus 84 ~y~~~~~ 90 (173)
T 2yrq_A 84 TYIPPKG 90 (173)
T ss_dssp HCCCCCC
T ss_pred hhhhhhh
Confidence 8876543
No 35
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.8e-18 Score=128.36 Aligned_cols=69 Identities=25% Similarity=0.384 Sum_probs=65.4
Q ss_pred CCCCCCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHH---HHHhhcCChhhhHHHHHHHHHHHHHHHHHh
Q 027712 103 DSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA---GEKWKNMTDEEKKPYLDKAAELKADYSKAM 174 (220)
Q Consensus 103 ~kd~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l---~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~ 174 (220)
..++++||||+||||+||+++|.+++.+ ++ ++.+|+++| |++|+.|++++|++|+++|.+++++|++++
T Consensus 5 ~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~~-~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~ 76 (93)
T 2cto_A 5 SSGMPNRKASRNAYYFFVQEKIPELRRR--GL-PVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDP 76 (93)
T ss_dssp CCCCCCCCSSCCHHHHHHHTTHHHHHHH--TC-CCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHc--CC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccc
Confidence 4578899999999999999999999988 67 889999999 999999999999999999999999999998
No 36
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.72 E-value=3.5e-19 Score=131.39 Aligned_cols=69 Identities=23% Similarity=0.353 Sum_probs=64.0
Q ss_pred ccCCCCCCCCCCCCchhhHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHh
Q 027712 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKG--VTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174 (220)
Q Consensus 101 k~~kd~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~--~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~ 174 (220)
+..+||++||||+|||||||+++|..|+.+||++ + +.+|+ ++|+.|++++|+||+++|+.++++|...-
T Consensus 15 k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~-s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h~~~~ 85 (90)
T 2yuk_A 15 KWEKEEALGEMATVAPVLYTNINFPNLKEEFPDW-TTRVKQIA----KLWRKASSQERAPYVQKARDNRAALRINK 85 (90)
T ss_dssp HHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSH-HHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred hccCCCCCCCCCccHHHHHHHHhHHHHHHHCcCc-cchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHHhhH
Confidence 4557999999999999999999999999999998 7 78887 99999999999999999999999998754
No 37
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.70 E-value=7.7e-18 Score=144.36 Aligned_cols=81 Identities=20% Similarity=0.413 Sum_probs=76.8
Q ss_pred CCCCCCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccCcCccc
Q 027712 103 DSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNE 182 (220)
Q Consensus 103 ~kd~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~~y~~ 182 (220)
..+|++||||+|||++||+++|..++.+||++ ++.+|+++||++|+.||+++|.+|.++|..++++|+.+| ..|..
T Consensus 36 ~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~-~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~---~~y~~ 111 (238)
T 3tmm_A 36 SVLASCPKKPVSSYLRFSKEQLPIFKAQNPDA-KTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEI---SRFKE 111 (238)
T ss_dssp CHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH---HHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH---HHHHh
Confidence 45788999999999999999999999999999 899999999999999999999999999999999999999 99988
Q ss_pred cCccc
Q 027712 183 VEDKA 187 (220)
Q Consensus 183 ~~~~~ 187 (220)
.++..
T Consensus 112 ~~~p~ 116 (238)
T 3tmm_A 112 QLTPS 116 (238)
T ss_dssp HCCHH
T ss_pred cCCHH
Confidence 87653
No 38
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.70 E-value=1.1e-17 Score=141.43 Aligned_cols=78 Identities=21% Similarity=0.448 Sum_probs=74.5
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccCcCccccCc
Q 027712 106 SNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVED 185 (220)
Q Consensus 106 ~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~~y~~~~~ 185 (220)
|++||||+|||++||+++|..++..||++ ++.+|+++||++|+.||+++|.+|.++|..++++|..+| ..|...++
T Consensus 7 p~~PKrP~say~lF~~~~r~~~k~~~P~~-~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~---~~y~~~~t 82 (214)
T 3tq6_A 7 ASCPKKPVSSYLRFSKEQLPIFKAQNPDA-KTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEI---SRFKEQLT 82 (214)
T ss_dssp HHSCCCCCCHHHHHHHHHHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHh---hhhcccCC
Confidence 67899999999999999999999999999 899999999999999999999999999999999999999 99988876
Q ss_pred cc
Q 027712 186 KA 187 (220)
Q Consensus 186 ~~ 187 (220)
..
T Consensus 83 p~ 84 (214)
T 3tq6_A 83 PS 84 (214)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 39
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.63 E-value=7e-16 Score=123.95 Aligned_cols=74 Identities=27% Similarity=0.499 Sum_probs=70.2
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHHHhccCcCcccc
Q 027712 106 SNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEV 183 (220)
Q Consensus 106 ~~~PKrP~sAy~lF~~e~r~~~k~~~P~~~~~~ei~k~l~~~Wk~Ls~eeK~~Y~~~A~~~k~~Y~~e~~~~~~y~~~ 183 (220)
+++||||+||||+|+.+.|..+...||++ ++.+|+++||++|+.||+++|.+|.++|..++++|..+| ..|...
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~---~~y~~~ 75 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRM-RNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKY---PNYKYR 75 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSC-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---SSCSCC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHh---hccccc
Confidence 67899999999999999999999999999 899999999999999999999999999999999999999 777653
No 40
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=98.98 E-value=3e-10 Score=81.60 Aligned_cols=70 Identities=24% Similarity=0.191 Sum_probs=57.1
Q ss_pred CcccccccCCCCchhhHH-H----HhhccCCccc---hhh-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCCCC
Q 027712 23 TSSATLMRGRDGSAFARC-E----ECNKNVPVAL---ISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTE 93 (220)
Q Consensus 23 ~~~~~~~r~~d~saf~~~-e----~~~~~~p~a~---~~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~~~ 93 (220)
++|+.++|.. |||.+| . .+...+|... .++ +.||+.|+.||++||++|+++|+.++ ++|.++|..|..
T Consensus 3 kdp~~PKrP~--say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k-~~y~~e~~~y~~ 79 (83)
T 1aab_A 3 GDPKKPRGKM--SSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADK-ARYEREMKTYIP 79 (83)
T ss_dssp CCTTCCCCCC--CHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHH-HHHHHHTTTCCC
T ss_pred CCCCCCCCCC--CHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHHhc
Confidence 5778888776 677655 3 3356778764 444 89999999999999999999999999 899999999976
Q ss_pred hh
Q 027712 94 PR 95 (220)
Q Consensus 94 ~k 95 (220)
++
T Consensus 80 ~~ 81 (83)
T 1aab_A 80 PK 81 (83)
T ss_dssp CS
T ss_pred cC
Confidence 43
No 41
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=98.97 E-value=8e-10 Score=80.75 Aligned_cols=66 Identities=17% Similarity=-0.000 Sum_probs=52.7
Q ss_pred CcccccccCCCCchhhHH-H----HhhccCCccc-hhh-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCC
Q 027712 23 TSSATLMRGRDGSAFARC-E----ECNKNVPVAL-ISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTS 91 (220)
Q Consensus 23 ~~~~~~~r~~d~saf~~~-e----~~~~~~p~a~-~~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~ 91 (220)
++|+.++|.. |||.+| . .+...+|... .++ +.|++.|+.||++||++|+++|+.++ ++|.++|..+
T Consensus 16 kdp~~pKrP~--say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k-~~y~~e~~~~ 88 (90)
T 1wgf_A 16 GGSEKPKRPV--SAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAALK-AQSERKSGPS 88 (90)
T ss_dssp SCCCCCCCCC--CHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT-TTTCCCCSSC
T ss_pred CCCCCCCCCC--CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 4567888775 788766 3 3356677643 344 89999999999999999999999999 8999998776
No 42
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=98.97 E-value=2.9e-10 Score=83.63 Aligned_cols=64 Identities=11% Similarity=-0.072 Sum_probs=54.7
Q ss_pred ccccCCCCchhhHH-----HHhhccCCccchhh-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCCCC
Q 027712 27 TLMRGRDGSAFARC-----EECNKNVPVALISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTE 93 (220)
Q Consensus 27 ~~~r~~d~saf~~~-----e~~~~~~p~a~~~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~~~ 93 (220)
.|+|. .|||.+| +.....+|..+.++ +.||++|+.||+.||++|+++|+.++ ++|+++|..|..
T Consensus 4 kPKrP--~SAy~lf~~~~r~~~k~~~p~~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK-~rYekEm~~Y~~ 73 (91)
T 1l8y_A 4 LPESP--KRAEEIWQQSVIGDYLARFKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQ-KRYERELSEMRA 73 (91)
T ss_dssp CCCCC--CHHHHHHHHHHHHHHHHHTTSTHHHHHHHHHHHHHTTGGGHHHHHHHHHHHHH-HHHHHHHHTTSC
T ss_pred CCCCC--CCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HHHHHHHHHHHc
Confidence 35554 4899887 44467778877777 99999999999999999999999999 899999999965
No 43
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=4.1e-10 Score=81.53 Aligned_cols=66 Identities=20% Similarity=0.145 Sum_probs=53.2
Q ss_pred CcccccccCCCCchhhHH-H----HhhccCCccc---hhh-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCC
Q 027712 23 TSSATLMRGRDGSAFARC-E----ECNKNVPVAL---ISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTS 91 (220)
Q Consensus 23 ~~~~~~~r~~d~saf~~~-e----~~~~~~p~a~---~~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~ 91 (220)
++|+.++|.. |||.+| . .+...+|... .++ +.||+.|+.||++||++|+++|+.++ ++|.++|..|
T Consensus 11 kdp~~PKrP~--say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k-~~y~~e~~~Y 85 (86)
T 2eqz_A 11 GDPKKPKGKM--SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADK-VRYDREMKDY 85 (86)
T ss_dssp CCSSSCCCCC--CHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred CCCCCCCCCC--cHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHc
Confidence 3467788766 677665 3 3356778765 455 89999999999999999999999999 8999998766
No 44
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=98.88 E-value=2.8e-10 Score=84.23 Aligned_cols=83 Identities=13% Similarity=0.130 Sum_probs=62.6
Q ss_pred CCCCCCCCCCCCcccccccccCCcccccccCCCCchhhHH-H----HhhccCCccc---hhh-hhhhHHHhhchHHhhhh
Q 027712 1 MPSSSKSNAPKPRKRVDAQSASTSSATLMRGRDGSAFARC-E----ECNKNVPVAL---ISM-HSCSLDAKIKMNLEAQV 71 (220)
Q Consensus 1 ~~~~~~~~~~~~rkrv~~~~~~~~~~~~~r~~d~saf~~~-e----~~~~~~p~a~---~~~-k~cs~~Wk~ls~~EK~~ 71 (220)
||..++..+.+.+++.. ++|+.++|.. |+|.+| . .+...+|... .++ +.||+.|+.||++||++
T Consensus 1 ~~~~~~~~~k~~~~k~~-----kdp~~pKrP~--say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~eeK~~ 73 (97)
T 2lhj_A 1 MAGASDRTGVRRPRKAK-----KDPNAPKRAL--SSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKP 73 (97)
T ss_dssp CCCCSSSSSCCCTTCTT-----SCCCCCCCCC--CSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCSTTTSS
T ss_pred CCCccccccccccccCC-----CCCCCCCCCC--CHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCHHHHHH
Confidence 67777776665554443 4577888776 566544 3 3345677764 444 89999999999999999
Q ss_pred hhhhhhhhhcchhhhhCCCC
Q 027712 72 VEKPAEINKKKPAERKKPTS 91 (220)
Q Consensus 72 y~~~a~~~k~~~y~~e~~~~ 91 (220)
|+++|+.++ ++|.++|..|
T Consensus 74 Y~~~A~~~k-~~y~~e~~~y 92 (97)
T 2lhj_A 74 YERMSDEDR-VRYEREKAEY 92 (97)
T ss_dssp SSHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHH
Confidence 999999999 8999998777
No 45
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=98.82 E-value=1.6e-09 Score=79.60 Aligned_cols=66 Identities=21% Similarity=0.081 Sum_probs=52.0
Q ss_pred CcccccccCCCCchhhHH-HHh----hccCCccc-hhh-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCC
Q 027712 23 TSSATLMRGRDGSAFARC-EEC----NKNVPVAL-ISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTS 91 (220)
Q Consensus 23 ~~~~~~~r~~d~saf~~~-e~~----~~~~p~a~-~~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~ 91 (220)
++|+.++|.. |||.+| .++ ...+|... .++ +.||+.|+.||++||++|+++|+.++ ++|..+|..|
T Consensus 16 kdp~~pKrP~--saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k-~~y~~e~~~Y 88 (93)
T 1cg7_A 16 KDPNAPKRAL--SAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADK-KRYESEKELY 88 (93)
T ss_dssp CCSSCCCSCC--CHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHH-HHTTHHHHHH
T ss_pred CCCCCCCCCC--CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4567788765 777765 443 34566543 333 89999999999999999999999999 8999998877
No 46
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.76 E-value=3.4e-09 Score=79.16 Aligned_cols=66 Identities=17% Similarity=0.023 Sum_probs=52.6
Q ss_pred cccccccCCCCchhhHH-HH----hhccCCccc-hhh-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCCC
Q 027712 24 SSATLMRGRDGSAFARC-EE----CNKNVPVAL-ISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTST 92 (220)
Q Consensus 24 ~~~~~~r~~d~saf~~~-e~----~~~~~p~a~-~~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~~ 92 (220)
+|+.++|.. +||.+| .+ +...+|... .++ +.|+..|+.||+++|++|+++|+.++ ++|..+|..|.
T Consensus 14 dp~~pKrP~--say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k-~~y~~e~~~Y~ 86 (102)
T 2co9_A 14 DPNEPQKPV--SAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAK-KEYLKQLAAYR 86 (102)
T ss_dssp CCCSCCCCC--CHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred CCCCCCCCC--CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 457788766 677766 32 245677654 334 89999999999999999999999999 89999998884
No 47
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=98.74 E-value=6e-09 Score=73.50 Aligned_cols=67 Identities=16% Similarity=-0.009 Sum_probs=53.4
Q ss_pred CcccccccCCCCchhhHH-H----HhhccCCccc-hhh-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCCC
Q 027712 23 TSSATLMRGRDGSAFARC-E----ECNKNVPVAL-ISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTST 92 (220)
Q Consensus 23 ~~~~~~~r~~d~saf~~~-e----~~~~~~p~a~-~~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~~ 92 (220)
+||+.++|.. |||.+| . .+...+|... .++ +.||..|+.||++||++|.++|+.++ ++|..+|..|.
T Consensus 2 kdp~~pKrP~--saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k-~~y~~e~~~y~ 75 (77)
T 1hme_A 2 KDPNAPKRPP--SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK-EKYEKDIAAYR 75 (77)
T ss_dssp CCSSCCCCCC--CTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHH-HHHHHHHTTSC
T ss_pred CCCCCCCCCC--CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence 5678888776 667655 2 2345666643 333 89999999999999999999999999 89999999984
No 48
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=98.70 E-value=2.3e-08 Score=72.43 Aligned_cols=65 Identities=17% Similarity=0.055 Sum_probs=51.6
Q ss_pred cccccccCCCCchhhHH-HH----hhccCCccc-hhh-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCC
Q 027712 24 SSATLMRGRDGSAFARC-EE----CNKNVPVAL-ISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTS 91 (220)
Q Consensus 24 ~~~~~~r~~d~saf~~~-e~----~~~~~p~a~-~~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~ 91 (220)
+|+.++|.. +||.+| .+ +...+|... .++ ++|++.|+.||++||++|+++|+.++ ++|.+++..|
T Consensus 14 dp~~pKrP~--~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k-~~~~~~~P~Y 85 (87)
T 2e6o_A 14 SPNKCKRPM--NAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALA-EEQKRLNPDC 85 (87)
T ss_dssp CCSSCCCCC--CHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH-HHHHHHCCCC
T ss_pred CCCCCCCCC--CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH-HHHHHHCcCC
Confidence 456788776 678766 33 345667643 334 89999999999999999999999999 8999998887
No 49
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=1.1e-08 Score=74.94 Aligned_cols=67 Identities=15% Similarity=-0.035 Sum_probs=53.2
Q ss_pred cccccccCCCCchhhHH-HHh----hccCCccc-hhh-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCCCC
Q 027712 24 SSATLMRGRDGSAFARC-EEC----NKNVPVAL-ISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTE 93 (220)
Q Consensus 24 ~~~~~~r~~d~saf~~~-e~~----~~~~p~a~-~~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~~~ 93 (220)
+|+.++|.. |||.+| .++ ...+|... .++ +.|++.|+.||++||++|+++|+.++ ++|.++|..|..
T Consensus 4 ~p~~pKrP~--say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k-~~y~~e~~~y~~ 77 (92)
T 2cs1_A 4 GSSGIKKPM--SASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDL-ERYNSQMKRAIE 77 (92)
T ss_dssp CCSSSCCCC--CHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTT-HHHHHHHHHHTS
T ss_pred CCCCCCCCC--CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 466677665 677765 333 46677654 334 89999999999999999999999999 899999988854
No 50
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=98.66 E-value=2e-08 Score=74.66 Aligned_cols=67 Identities=12% Similarity=-0.004 Sum_probs=53.5
Q ss_pred CcccccccCCCCchhhHH-----HHhhccCCccc-hhh-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCCC
Q 027712 23 TSSATLMRGRDGSAFARC-----EECNKNVPVAL-ISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTST 92 (220)
Q Consensus 23 ~~~~~~~r~~d~saf~~~-----e~~~~~~p~a~-~~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~~ 92 (220)
+||+.++|.. |||.+| ..+...+|... .++ +.||+.|+.||++||++|.++|+.++ ++|..+|..|.
T Consensus 6 kdp~~PKRP~--saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k-~~Y~~e~~~y~ 79 (99)
T 1k99_A 6 KHPDFPKKPL--TPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREK-QEFERNLARFR 79 (99)
T ss_dssp SSSSSCCCSC--CHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHH-HHHHHHHGGGG
T ss_pred CCCCCCCCCC--CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3567788775 778765 33355677654 344 89999999999999999999999999 89999998883
No 51
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=98.62 E-value=2.6e-08 Score=69.97 Aligned_cols=65 Identities=14% Similarity=0.058 Sum_probs=50.6
Q ss_pred ccccccCCCCchhhHH-HH----hhccCCccc-hhh-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCCC
Q 027712 25 SATLMRGRDGSAFARC-EE----CNKNVPVAL-ISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTST 92 (220)
Q Consensus 25 ~~~~~r~~d~saf~~~-e~----~~~~~p~a~-~~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~~ 92 (220)
|+.++|.. |||.+| .+ +...+|... .++ +.||+.|+.||++||++|.++|+.++ ++|..++..|.
T Consensus 2 p~~pkrP~--~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k-~~y~~~~~~Yk 73 (76)
T 1hry_A 2 QDRVKRPM--NAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQ-AMHREKYPNYK 73 (76)
T ss_dssp -CCCCCCC--CHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-HHHHHHSSSCC
T ss_pred cCCCCCCC--CHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHH-HHHHHHCCCCC
Confidence 56677665 777766 32 245566543 333 89999999999999999999999999 89999999884
No 52
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=98.62 E-value=1.6e-08 Score=70.11 Aligned_cols=61 Identities=26% Similarity=0.171 Sum_probs=48.5
Q ss_pred cccCCCCchhhHH-H----HhhccCCccc---hhh-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCC
Q 027712 28 LMRGRDGSAFARC-E----ECNKNVPVAL---ISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTS 91 (220)
Q Consensus 28 ~~r~~d~saf~~~-e----~~~~~~p~a~---~~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~ 91 (220)
|+|.. |||.+| . .+...+|... .++ +.||+.|+.||++||++|+++|+.++ ++|.++|..|
T Consensus 2 PKrP~--say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k-~~y~~e~~~Y 71 (71)
T 1ckt_A 2 PRGKM--SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADK-ARYEREMKTY 71 (71)
T ss_dssp CCCCC--CHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHH-HHHHHHHTTC
T ss_pred cCCCC--CHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH-HHHHHHHHhC
Confidence 44444 677655 3 3356678765 444 89999999999999999999999999 8999999876
No 53
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=98.62 E-value=2.8e-08 Score=70.95 Aligned_cols=67 Identities=15% Similarity=-0.030 Sum_probs=52.8
Q ss_pred CcccccccCCCCchhhHH-H----HhhccCCccc-hhh-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCCC
Q 027712 23 TSSATLMRGRDGSAFARC-E----ECNKNVPVAL-ISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTST 92 (220)
Q Consensus 23 ~~~~~~~r~~d~saf~~~-e----~~~~~~p~a~-~~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~~ 92 (220)
+++..++|.. |||.+| . .+...+|... .++ +.||+.|+.||++||++|.++|+.++ ++|..++..|.
T Consensus 3 ~~~~~pkrP~--~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k-~~y~~~~~~yk 76 (82)
T 1wz6_A 3 SGSSGARRPM--NAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYK-DAFMKANPGYR 76 (82)
T ss_dssp SSCCCSCCCC--CHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-HHHCCSCSSCC
T ss_pred CCCCCCCCCC--CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH-HHHHHHhHHhh
Confidence 3556677665 788766 3 3345566643 334 89999999999999999999999999 89999999985
No 54
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=98.59 E-value=1.5e-08 Score=74.11 Aligned_cols=68 Identities=12% Similarity=0.016 Sum_probs=54.5
Q ss_pred CcccccccCCCCchhhHH-H----HhhccCCccch-hh-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCCCC
Q 027712 23 TSSATLMRGRDGSAFARC-E----ECNKNVPVALI-SM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTE 93 (220)
Q Consensus 23 ~~~~~~~r~~d~saf~~~-e----~~~~~~p~a~~-~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~~~ 93 (220)
++|+.++|.. |||.+| . .+...+|.... ++ +.||+.|+.||++||++|.++|+.++ ++|.++|..|..
T Consensus 3 kdp~~pKrP~--~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k-~~y~~e~~~Y~~ 77 (92)
T 2crj_A 3 SGSSGPKAPV--TGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEK-QQYLKELWAYQQ 77 (92)
T ss_dssp CCCSSSCCCC--CHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHH-HHHHHHHHHHHS
T ss_pred CCCCCCCCCC--CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHHHHHHHHHc
Confidence 5677888776 778766 2 33456676543 33 89999999999999999999999999 899999988854
No 55
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=98.57 E-value=4.5e-08 Score=73.59 Aligned_cols=69 Identities=13% Similarity=0.080 Sum_probs=52.1
Q ss_pred CCcccccccCCCCchhhHH-----HHhhccCCccch-hh-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCCCC
Q 027712 22 STSSATLMRGRDGSAFARC-----EECNKNVPVALI-SM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTE 93 (220)
Q Consensus 22 ~~~~~~~~r~~d~saf~~~-----e~~~~~~p~a~~-~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~~~ 93 (220)
.+++..++|.. +||.+| ..+...+|.... ++ +.||+.|+.||++||++|+++|+.++ ++|.+++..|.-
T Consensus 24 ~k~~~~pKRP~--naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k-~~y~~e~~~Yky 99 (106)
T 4euw_A 24 SKNKPHVKRPM--NAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLR-VQHKKDHPDYKY 99 (106)
T ss_dssp ----CCCCCCC--CHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH-HHHHHHCTTCCC
T ss_pred cCCCCcCCCCC--CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHHHHhhhcCc
Confidence 34566788777 677655 233556676443 33 89999999999999999999999999 899999999953
No 56
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=98.56 E-value=2e-08 Score=69.09 Aligned_cols=58 Identities=16% Similarity=0.091 Sum_probs=46.0
Q ss_pred cccCCCCchhhHH-HHh----hccCCccchhh-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCC
Q 027712 28 LMRGRDGSAFARC-EEC----NKNVPVALISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTS 91 (220)
Q Consensus 28 ~~r~~d~saf~~~-e~~----~~~~p~a~~~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~ 91 (220)
|+|.. |+|.+| .++ ...+| .++ +.||..|+.||++||++|+++|+.++ ++|+++|..|
T Consensus 3 PKrP~--say~~F~~~~r~~~k~~~p---~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k-~~Y~~e~~~y 66 (67)
T 3fgh_A 3 PKRPR--SAYNVYVAERFQEAKGDSP---QEKLKTVKENWKNLSDSEKELYIQHAKEDE-TRYHNEMKSW 66 (67)
T ss_dssp CCCCC--CHHHHHHHHHHHHHCSSSH---HHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-HHHHHHHHHC
T ss_pred CCCCC--CHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhhCCHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 55555 677655 333 34444 355 89999999999999999999999999 8999998776
No 57
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=98.55 E-value=6.4e-08 Score=69.74 Aligned_cols=58 Identities=9% Similarity=-0.062 Sum_probs=47.4
Q ss_pred CchhhHH-H----HhhccCCccc-hhh-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCCC
Q 027712 34 GSAFARC-E----ECNKNVPVAL-ISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTST 92 (220)
Q Consensus 34 ~saf~~~-e----~~~~~~p~a~-~~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~~ 92 (220)
.|||.+| . .+...+|... .++ +.||+.|+.||++||++|.++|+.++ ++|.+++..|.
T Consensus 7 ~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k-~~y~~~~~~Yk 71 (86)
T 2lef_A 7 LNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKER-QLHMQLYPGWS 71 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH-HHHHHHSTTCC
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HHHHHHccccc
Confidence 3688766 3 3345567653 334 89999999999999999999999999 89999999997
No 58
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=98.52 E-value=3.1e-08 Score=73.95 Aligned_cols=62 Identities=8% Similarity=-0.092 Sum_probs=47.4
Q ss_pred ccccCCCCchhhHH-HHhhccCCc----cchhh-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCCC
Q 027712 27 TLMRGRDGSAFARC-EECNKNVPV----ALISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTST 92 (220)
Q Consensus 27 ~~~r~~d~saf~~~-e~~~~~~p~----a~~~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~~ 92 (220)
.++|.. |||.+| .+|.. +|. .+.++ +.||++|+.|++.||++|+++|+.++ ++|..+|..|.
T Consensus 8 ~PKrP~--say~lF~~e~~~-~p~~~~~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k-~~Y~~e~~~Y~ 75 (101)
T 1v63_A 8 PKKPPM--NGYQKFSQELLS-NGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQ-RQYKVHLDLWV 75 (101)
T ss_dssp SCCCCS--SSHHHHHHHHHH-HCTTTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred CCCCCC--CHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 355543 677655 55522 232 23455 99999999999999999999999999 89999998885
No 59
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=98.51 E-value=4.9e-08 Score=73.72 Aligned_cols=67 Identities=18% Similarity=0.081 Sum_probs=50.7
Q ss_pred ccccc-ccCCCCchhhHH-HHhhccC-Cccchhh-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCCCC
Q 027712 24 SSATL-MRGRDGSAFARC-EECNKNV-PVALISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTE 93 (220)
Q Consensus 24 ~~~~~-~r~~d~saf~~~-e~~~~~~-p~a~~~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~~~ 93 (220)
+++.| +|.. |||.+| .+|...+ ...+.++ +.|+++|+.||+.||++|+++|+.++ ++|..+|..|..
T Consensus 13 d~~~P~KrP~--say~lF~~e~r~~~k~~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k-~~Y~~e~~~Y~~ 83 (108)
T 1v64_A 13 FDGRPTKPPP--NSYSLYCAELMANMKDVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKK-KDYEVELLRFLE 83 (108)
T ss_dssp TTTSCCCCCS--SHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred CCCCCCCCCC--CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Confidence 34567 6554 677655 5443333 2334444 89999999999999999999999999 899999988853
No 60
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=98.49 E-value=8.5e-08 Score=69.01 Aligned_cols=65 Identities=14% Similarity=0.053 Sum_probs=51.2
Q ss_pred ccccccCCCCchhhHH-HH----hhccCCccch-hh-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCCC
Q 027712 25 SATLMRGRDGSAFARC-EE----CNKNVPVALI-SM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTST 92 (220)
Q Consensus 25 ~~~~~r~~d~saf~~~-e~----~~~~~p~a~~-~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~~ 92 (220)
|+.++|.. |||.+| .+ +...+|.... ++ +.||+.|+.||++||++|.++|+.++ ++|..++..|.
T Consensus 2 p~~pKRP~--~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k-~~y~~~~~~Yk 73 (85)
T 1j46_A 2 QDRVKRPM--NAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQ-AMHREKYPNYK 73 (85)
T ss_dssp CCCCCCCC--CHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH-HHHHHHCTTCC
T ss_pred cCcCCCCC--CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HHHHHHCcccc
Confidence 45567655 788766 32 2455676543 33 89999999999999999999999999 89999999985
No 61
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=98.48 E-value=1.2e-07 Score=65.55 Aligned_cols=56 Identities=14% Similarity=0.042 Sum_probs=44.4
Q ss_pred chhhHH-----HHhhccCCccchh-h-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCC
Q 027712 35 SAFARC-----EECNKNVPVALIS-M-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTS 91 (220)
Q Consensus 35 saf~~~-----e~~~~~~p~a~~~-~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~ 91 (220)
|||.+| ..+...+|..... + +.||+.|+.||++||++|.++|+.++ ++|..++..|
T Consensus 8 ~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k-~~y~~~~~~Y 70 (71)
T 4a3n_A 8 NAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLR-VQHMQDHPNY 70 (71)
T ss_dssp CHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH-HHHHTTCC--
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HHHHHHCcCc
Confidence 677655 3345667765533 3 89999999999999999999999999 8999998877
No 62
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=98.48 E-value=7.2e-08 Score=67.37 Aligned_cols=63 Identities=14% Similarity=0.049 Sum_probs=49.3
Q ss_pred ccccccCCCCchhhHH-H----HhhccCCccch-hh-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCCC
Q 027712 25 SATLMRGRDGSAFARC-E----ECNKNVPVALI-SM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTST 92 (220)
Q Consensus 25 ~~~~~r~~d~saf~~~-e----~~~~~~p~a~~-~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~~ 92 (220)
|+.++|.. |||.+| . .+...+|.... ++ +.||+.|+.| +||++|+++|+.++ ++|.++|..|.
T Consensus 1 P~~pKrP~--say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k-~~y~~e~~~Y~ 70 (73)
T 1wxl_A 1 SHMPKRAT--TAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDK-QRYHDEMRNYK 70 (73)
T ss_dssp CCCCCCCC--CHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC--TTHHHHHHHHHHHH-HHHHTTTGGGT
T ss_pred CccCCCCC--CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh--HhhHHHHHHHHHHH-HHHHHHHHHHH
Confidence 34566665 677655 3 33566777543 33 8999999999 99999999999999 89999999884
No 63
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=98.47 E-value=1.6e-07 Score=66.64 Aligned_cols=62 Identities=13% Similarity=0.102 Sum_probs=49.1
Q ss_pred cccCCCCchhhHH-H----HhhccCCccc-hhh-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCCC
Q 027712 28 LMRGRDGSAFARC-E----ECNKNVPVAL-ISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTST 92 (220)
Q Consensus 28 ~~r~~d~saf~~~-e----~~~~~~p~a~-~~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~~ 92 (220)
++|.. |||.+| . .+...+|... .++ +.||+.|+.||++||++|.++|+.++ ++|..++..|.
T Consensus 3 pkrP~--~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k-~~y~~~~~~Yk 71 (80)
T 1gt0_D 3 VKRPM--NAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLR-ALHMKEHPDYK 71 (80)
T ss_dssp CCCCC--CHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH-HHHHHHCTTCC
T ss_pred CCCCC--CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHCcccc
Confidence 44443 678766 2 3355677643 333 89999999999999999999999999 89999999995
No 64
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=98.45 E-value=1.4e-07 Score=67.24 Aligned_cols=64 Identities=14% Similarity=0.051 Sum_probs=49.7
Q ss_pred cccccCCCCchhhHH-H----HhhccCCccch-hh-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCCC
Q 027712 26 ATLMRGRDGSAFARC-E----ECNKNVPVALI-SM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTST 92 (220)
Q Consensus 26 ~~~~r~~d~saf~~~-e----~~~~~~p~a~~-~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~~ 92 (220)
+.++|.. |||.+| . .+...+|.... ++ +.||+.|+.||++||++|.++|+.++ ++|..++..|.
T Consensus 5 ~~pKrP~--~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k-~~y~~~~~~Yk 75 (83)
T 3f27_D 5 SRIRRPM--NAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLR-VQHMQDHPNYK 75 (83)
T ss_dssp --CCCCC--CHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH-HHHHHHCTTCC
T ss_pred CCCCCCC--CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HHHHHHCCCCe
Confidence 3456555 678765 2 33556676543 34 89999999999999999999999999 89999999985
No 65
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=3.6e-07 Score=65.56 Aligned_cols=55 Identities=15% Similarity=0.096 Sum_probs=43.5
Q ss_pred cccccccCCCCchhhHH-----HHhhccCCccc--hhh-hhhhHHHhhchHHhhhhhhhhhhhhh
Q 027712 24 SSATLMRGRDGSAFARC-----EECNKNVPVAL--ISM-HSCSLDAKIKMNLEAQVVEKPAEINK 80 (220)
Q Consensus 24 ~~~~~~r~~d~saf~~~-----e~~~~~~p~a~--~~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k 80 (220)
+++.++|.. |||.+| ..+...+|... .++ +.||++|+.||+.||++|+++|+.+.
T Consensus 2 ~~~~PKRP~--say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d~ 64 (81)
T 2d7l_A 2 SSGSSGRPK--TGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGET 64 (81)
T ss_dssp CCCCSSCCC--CHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCC--CHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 456777665 677655 33467788864 555 99999999999999999999999997
No 66
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=4e-07 Score=67.09 Aligned_cols=63 Identities=13% Similarity=0.122 Sum_probs=45.4
Q ss_pred cccccccCCCCchhhHH-HHh----hccCCccchhh-hh---hhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCC
Q 027712 24 SSATLMRGRDGSAFARC-EEC----NKNVPVALISM-HS---CSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPT 90 (220)
Q Consensus 24 ~~~~~~r~~d~saf~~~-e~~----~~~~p~a~~~~-k~---cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~ 90 (220)
.++.++|.. |||.+| .++ ... ...+.++ +. |+++|+.|+++||++|+++|+.++ +.|..++..
T Consensus 7 ~~~~PKRP~--sAf~lF~~e~R~~ik~e-~~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K-~~y~kd~~~ 78 (93)
T 2cto_A 7 GMPNRKASR--NAYYFFVQEKIPELRRR-GLPVARVADAIPYCSSDWALLREEEKEKYAEMAREWR-AAQGKDPGP 78 (93)
T ss_dssp CCCCCCSSC--CHHHHHHHTTHHHHHHH-TCCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHH-HHHHHCSSC
T ss_pred CCCCCCCCC--CHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHhccccc
Confidence 345667665 677655 333 222 2334444 44 599999999999999999999999 899988754
No 67
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=98.34 E-value=5e-07 Score=63.72 Aligned_cols=57 Identities=12% Similarity=0.022 Sum_probs=46.8
Q ss_pred chhhHH-H----HhhccCCccch-hh-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCCC
Q 027712 35 SAFARC-E----ECNKNVPVALI-SM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTST 92 (220)
Q Consensus 35 saf~~~-e----~~~~~~p~a~~-~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~~ 92 (220)
|||.+| . .+...+|.... ++ +.||+.|+.||++||++|.++|+.++ ++|..++..|.
T Consensus 8 naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k-~~y~~~~p~Yk 71 (79)
T 3u2b_C 8 NAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIQEAERLR-LKHMADYPDYK 71 (79)
T ss_dssp CHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH-HHHHHHSSSCC
T ss_pred CHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHCCCCe
Confidence 677755 2 33556676543 33 89999999999999999999999999 89999999985
No 68
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=98.31 E-value=5.1e-07 Score=64.15 Aligned_cols=63 Identities=19% Similarity=0.074 Sum_probs=49.0
Q ss_pred ccccCCCCchhhHH-H----HhhccCCccch-hh-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCCC
Q 027712 27 TLMRGRDGSAFARC-E----ECNKNVPVALI-SM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTST 92 (220)
Q Consensus 27 ~~~r~~d~saf~~~-e----~~~~~~p~a~~-~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~~ 92 (220)
.++|.. |||.+| . .+...+|.... ++ +.||+.|+.||++||++|.++|+.++ ++|.+++..|.
T Consensus 4 ~pkRP~--naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k-~~~~~~~p~Yk 73 (81)
T 1i11_A 4 HIKRPM--NAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLS-KQHLEKYPDYK 73 (81)
T ss_dssp CSCCSC--CHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHH-HHHHTTCSCC-
T ss_pred CCCCCC--CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHH-HHHHHHCCCCe
Confidence 355554 788766 2 33456676543 33 89999999999999999999999999 89999999885
No 69
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.29 E-value=1.7e-07 Score=68.69 Aligned_cols=62 Identities=10% Similarity=-0.100 Sum_probs=47.7
Q ss_pred CcccccccCCCCchhhHH--HHh---hccCCccchhhhhhhHHHhhchHHhhhhhhhhhhhhhcchhhhh
Q 027712 23 TSSATLMRGRDGSAFARC--EEC---NKNVPVALISMHSCSLDAKIKMNLEAQVVEKPAEINKKKPAERK 87 (220)
Q Consensus 23 ~~~~~~~r~~d~saf~~~--e~~---~~~~p~a~~~~k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e 87 (220)
+||++++|+. |||.+| +.+ ...+|.....+..++++|+.|+++||++|++.|+.++ +.|...
T Consensus 18 kDpnaPKRp~--sAf~lf~~e~R~kik~enP~~s~~~~eIse~Wk~ls~eeK~pY~~kA~~~K-~~h~~~ 84 (90)
T 2yuk_A 18 KEEALGEMAT--VAPVLYTNINFPNLKEEFPDWTTRVKQIAKLWRKASSQERAPYVQKARDNR-AALRIN 84 (90)
T ss_dssp HHHHHGGGCS--SSHHHHHHHHCTTHHHHCCSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH-HHHHHS
T ss_pred CCCCCCCCCc--cHHHHHHHHhHHHHHHHCcCccchHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHHhh
Confidence 4788999887 677654 332 5567765433666779999999999999999999999 677654
No 70
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=98.26 E-value=2.1e-07 Score=65.02 Aligned_cols=61 Identities=15% Similarity=0.036 Sum_probs=47.0
Q ss_pred cccccCCCCchhhHH-HHh----hccCCccch-hh-hhhhHHHhhchHHhhhhhhhhhhhhhcchhhhhCCCC
Q 027712 26 ATLMRGRDGSAFARC-EEC----NKNVPVALI-SM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTS 91 (220)
Q Consensus 26 ~~~~r~~d~saf~~~-e~~----~~~~p~a~~-~~-k~cs~~Wk~ls~~EK~~y~~~a~~~k~~~y~~e~~~~ 91 (220)
+.|+|.. |||.+| .++ ...+|...+ ++ +.||+.|+.||+ |++|+++|+.++ ++|..+|..|
T Consensus 2 ~~PKrP~--say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k-~~y~~~~~~Y 69 (73)
T 3nm9_A 2 DKPKRPL--SAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMKD--KSEWEAKAAKAK-DDYDRAVKEF 69 (73)
T ss_dssp CCCCCCC--CHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHH-HHHHHHHHHH
T ss_pred ccCCCCC--CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHH-HHHHHHHHHH
Confidence 3466555 688755 333 556676543 34 899999999997 999999999999 8999998776
No 71
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=51.07 E-value=14 Score=30.10 Aligned_cols=48 Identities=19% Similarity=0.340 Sum_probs=37.3
Q ss_pred CCCCChhhHHHH-HHHHhhcCChhhhHHHHHHHHH-HHHHHHHHhccCcCcccc
Q 027712 132 PDSKGVTGVAKE-AGEKWKNMTDEEKKPYLDKAAE-LKADYSKAMEGNGDYNEV 183 (220)
Q Consensus 132 P~~~~~~ei~k~-l~~~Wk~Ls~eeK~~Y~~~A~~-~k~~Y~~e~~~~~~y~~~ 183 (220)
|.. ++..+++. ||.-|+.+|+++++.|.+.... +..-|-..+ ..|...
T Consensus 70 p~~-D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l---~~y~~q 119 (211)
T 2qgu_A 70 PRA-DFKRTTQIAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGAL---ANVRNQ 119 (211)
T ss_dssp GGB-CHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHH---HTCSSC
T ss_pred hhc-CHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHH---HhhCCC
Confidence 444 66767664 5899999999999999987776 556788889 777653
No 72
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=29.63 E-value=20 Score=19.49 Aligned_cols=10 Identities=40% Similarity=0.850 Sum_probs=7.7
Q ss_pred CCCCCCcccc
Q 027712 7 SNAPKPRKRV 16 (220)
Q Consensus 7 ~~~~~~rkrv 16 (220)
-.|||+|||+
T Consensus 18 eepprkrkrl 27 (28)
T 3ukw_C 18 EEPPRKRKRL 27 (28)
T ss_dssp GSCCSSCCCC
T ss_pred cCcchhhhcc
Confidence 3688888886
Done!