Query 027713
Match_columns 220
No_of_seqs 143 out of 1237
Neff 6.6
Searched_HMMs 29240
Date Tue Mar 26 00:07:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027713.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027713hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zav_A 50S ribosomal protein L 100.0 1.3E-46 4.3E-51 311.9 19.1 174 42-215 2-179 (180)
2 2j01_J 50S ribosomal protein L 100.0 9.2E-46 3.2E-50 304.9 21.2 170 43-215 1-172 (173)
3 3sgf_H 50S ribosomal protein L 100.0 2.4E-45 8.2E-50 300.5 -7.7 163 41-216 1-164 (165)
4 1vq8_G Acidic ribosomal protei 99.9 2.7E-23 9.2E-28 187.2 3.8 127 37-168 5-133 (348)
5 3u5i_q A0, L10E, 60S acidic ri 99.8 2.7E-21 9.2E-26 172.0 10.8 115 41-160 1-120 (312)
6 3jsy_A Acidic ribosomal protei 99.8 4.7E-21 1.6E-25 162.3 10.3 95 45-140 2-103 (213)
7 3a1y_G Acidic ribosomal protei 99.8 4.7E-22 1.6E-26 174.9 3.5 120 42-166 2-129 (284)
8 3j21_k Acidic ribosomal protei 99.8 1.7E-20 5.8E-25 168.7 4.9 99 41-140 1-107 (339)
9 2zkr_g 60S acidic ribosomal pr 99.8 8E-21 2.7E-25 169.3 0.0 117 44-165 6-127 (317)
10 3iz5_s 60S acidic ribosomal pr 99.8 4.5E-20 1.5E-24 164.6 4.0 95 44-139 7-108 (319)
11 1zav_A 50S ribosomal protein L 54.3 11 0.00037 30.0 3.7 28 187-214 140-167 (180)
12 1jjg_A M156R; beta barrel, S1 52.7 3.5 0.00012 29.9 0.4 33 63-95 57-90 (102)
13 2j01_J 50S ribosomal protein L 52.7 11 0.00038 29.7 3.5 25 189-213 135-159 (173)
14 2qko_A Possible transcriptiona 45.9 17 0.00059 27.9 3.6 66 33-105 15-82 (215)
15 1kbh_B CREB-binding protein, n 35.9 64 0.0022 21.0 4.4 41 176-216 8-53 (59)
16 1jo0_A Hypothetical protein HI 29.6 45 0.0015 24.0 3.3 71 53-125 9-87 (98)
17 1sbo_A Putative anti-sigma fac 26.8 1.5E+02 0.005 19.9 6.0 63 51-113 31-102 (110)
18 1eh2_A EPS15; calcium binding, 25.7 31 0.0011 24.6 1.8 17 17-33 86-102 (106)
19 3rht_A (gatase1)-like protein; 24.2 60 0.0021 27.2 3.6 40 57-96 46-87 (259)
20 2ka5_A Putative anti-sigma fac 23.9 1.3E+02 0.0044 21.4 5.1 62 51-112 39-109 (125)
21 4hyl_A Stage II sporulation pr 20.4 61 0.0021 22.7 2.5 61 51-112 31-99 (117)
No 1
>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: d.58.62.1 PDB: 1zaw_A 1zax_A
Probab=100.00 E-value=1.3e-46 Score=311.87 Aligned_cols=174 Identities=30% Similarity=0.491 Sum_probs=164.7
Q ss_pred ccChhHHHHHHHHHHHHHhcCCeEEEEEeCCCChhhHHHHHHhcCCC----CEEEEEchHHHHHHHhcCCcccccccccC
Q 027713 42 AISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPEN----TKLIVAKNTLVYKAIEGTQWEALKPCMSG 117 (220)
Q Consensus 42 a~~r~~K~~~v~~l~e~l~~s~~v~vv~y~gl~~~~~~~LR~~Lr~~----~~l~VvKNtL~k~Al~~t~~~~L~~~l~G 117 (220)
+|+|++|.++|++|++.|++|+.++++||+|++++++++||++||+. ++++|+||||+++|+++++++++.++|+|
T Consensus 2 ~m~~~~K~~~v~el~~~l~~~~~v~v~~~~gltv~q~~~LR~~lr~~~~~g~~~~V~KNtL~~~Al~~~~~~~L~~~l~G 81 (180)
T 1zav_A 2 MLTRQQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNAEYEGYEEFLKG 81 (180)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCSEEEEECCTTCCHHHHHHHHHHHHHHHTTSEEEEEECHHHHHHHHHHTTCCSCGGGCSS
T ss_pred CCCHHHHHHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHhcccCCeEEEEehHHHHHHHHccCChhhHHHhCcC
Confidence 68899999999999999999999999999999999999999999864 89999999999999999999999999999
Q ss_pred ceEEEEeecCChhHHhHHHHHHHhhcCcCCcceeeeeeCCeecCHhhHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 027713 118 MNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKLLGALQGSAIGLVGTLQ 197 (220)
Q Consensus 118 ~talvfs~~~~~~~~aK~l~~f~K~~~~~~l~l~gg~veg~~l~~~~v~~lakLPs~e~l~aqlv~~L~~p~~~l~~~L~ 197 (220)
|++++|++++||.+++|++.+|+|+++.+++.|+||++||+++|.++|++||+|||+|+|+|+|+|+|++|+++++++|+
T Consensus 82 ~~a~~fs~~~dp~~~ak~l~~f~k~~~~~~l~ikgg~~eg~~~~~~~v~~la~LPs~eel~a~l~g~l~ap~~~l~~~l~ 161 (180)
T 1zav_A 82 PTAVLYVTEGDPVEAVKIIYNFYKDKKADLSRLKGGFLEGKKFTAEEVENIAKLPSKEELYAMLVGRVKAPITGLVFALS 161 (180)
T ss_dssp SEEEEEESSSCTHHHHHHHHHHHHHTTCCGGGEEEEEETTEEEEHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHhCCCCCeEEEEEEECCEEcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999997356778999999999998212689999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhhh
Q 027713 198 APARDLLMVLKAYAKKLE 215 (220)
Q Consensus 198 ~~~~~L~~~L~~~~~k~e 215 (220)
+++++++++|+++++|+|
T Consensus 162 ~~~~~l~~~l~a~~~k~~ 179 (180)
T 1zav_A 162 GILRNLVYVLNAIKEKKS 179 (180)
T ss_dssp HHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999999999876
No 2
>2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_J 3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I 3ms1_I 3pyt_I 3pyr_I 3pyo_I 3pyv_I
Probab=100.00 E-value=9.2e-46 Score=304.91 Aligned_cols=170 Identities=31% Similarity=0.464 Sum_probs=162.6
Q ss_pred cChhHHHHHHHHHHHHHhcCC-eEEEEEeCCCChhhHHHHHHhcCCC-CEEEEEchHHHHHHHhcCCcccccccccCceE
Q 027713 43 ISRTKKEETVDTVKTHLENCH-LIAAIKYKGFTVKQFQDLRRSLPEN-TKLIVAKNTLVYKAIEGTQWEALKPCMSGMNA 120 (220)
Q Consensus 43 ~~r~~K~~~v~~l~e~l~~s~-~v~vv~y~gl~~~~~~~LR~~Lr~~-~~l~VvKNtL~k~Al~~t~~~~L~~~l~G~ta 120 (220)
|+|++|.++|++|++.|++|+ .++++||+|++++++++||++||+. ++++|+||||+++|++++++++ .++|+||++
T Consensus 1 m~~~~K~~~v~el~~~l~~~~~~v~v~~~~gltv~~~~~LR~~lr~~g~~~~V~KNtL~~~Al~~~~~~~-~~~l~G~~a 79 (173)
T 2j01_J 1 MPNKRNVELLATLKENLERAQGSFFLVNYQGLPAKETHALRQALKQNGARLFVAKNTLIRLALKELGLPE-LDGLQGPSA 79 (173)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEEcCCCCHHHHHHHHHHHHHCCcEEEEehhHHHHHHHhcCCCCc-cccccCCEE
Confidence 578999999999999999999 9999999999999999999999985 8999999999999999999999 999999999
Q ss_pred EEEeecCChhHHhHHHHHHHhhcCcCCcceeeeeeCCeecCHhhHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhchH
Q 027713 121 WLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKLLGALQGSAIGLVGTLQAPA 200 (220)
Q Consensus 121 lvfs~~~~~~~~aK~l~~f~K~~~~~~l~l~gg~veg~~l~~~~v~~lakLPs~e~l~aqlv~~L~~p~~~l~~~L~~~~ 200 (220)
++|+ +||.+++|++.+|+|++..+++.|+||++||+++|.++|++||+|||+|+|+|+|+|+|++|+++++++|++++
T Consensus 80 ~~fs--~dp~~~ak~l~~f~k~~~~~~l~ikgg~~eg~~~~~~~v~~la~LPs~eel~a~l~g~l~ap~~~~~~~l~~~~ 157 (173)
T 2j01_J 80 VVFY--EDPVAAAKTLVQFAKSNPKGIPQVKSGLLQGQILTAKDVEALAELPTMDELRAELVGVLQAPMAELVGVLGGVA 157 (173)
T ss_pred EEEe--CCHHHHHHHHHHHHHhCCCCCeEEEEEEECCEEcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 9999 46778999999999998323689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 027713 201 RDLLMVLKAYAKKLE 215 (220)
Q Consensus 201 ~~L~~~L~~~~~k~e 215 (220)
++|+++|+++++|+|
T Consensus 158 ~~l~~~l~a~~~k~~ 172 (173)
T 2j01_J 158 RELVGILEAYAEKKA 172 (173)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999999876
No 3
>3sgf_H 50S ribosomal protein L10; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 3uos_H 3j12_J* 3j0w_J* 3j0y_J* 3j11_J* 3j0t_J* 3j14_J*
Probab=100.00 E-value=2.4e-45 Score=300.46 Aligned_cols=163 Identities=26% Similarity=0.401 Sum_probs=150.3
Q ss_pred hccChhHHHHHHHHHHHHHhcCCeEEEEEeCCCChhhHHHHHHhcCCC-CEEEEEchHHHHHHHhcCCcccccccccCce
Q 027713 41 AAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPEN-TKLIVAKNTLVYKAIEGTQWEALKPCMSGMN 119 (220)
Q Consensus 41 ~a~~r~~K~~~v~~l~e~l~~s~~v~vv~y~gl~~~~~~~LR~~Lr~~-~~l~VvKNtL~k~Al~~t~~~~L~~~l~G~t 119 (220)
|+|+|++|.++|++|++.|++|+.++++||+|++++|+++||++||+. ++++|+||||+++|+++++|+++.++|+|||
T Consensus 1 m~~~r~~K~~~V~el~~~l~~~~~v~v~~~~gltv~q~~~LR~~lr~~g~~~~V~KNtL~~~Al~~~~~~~L~~~l~G~t 80 (165)
T 3sgf_H 1 MALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLLRRAVEGTPFECLKDAFVGPT 80 (165)
T ss_dssp CCSHHHHHHHHHHHHHHHHSCSCEEECCCTTCCHHHHHHHTTTTTSSCCSSEECCCCTTTTTTTTTCTTTCTTCSTTCCS
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHHcCcEEEEECcHHHHHHHhcCCcchhHHhCcCCE
Confidence 889999999999999999999999999999999999999999999985 9999999999999999999999999999999
Q ss_pred EEEEeecCChhHHhHHHHHHHhhcCcCCcceeeeeeCCeecCHhhHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhch
Q 027713 120 AWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKLLGALQGSAIGLVGTLQAP 199 (220)
Q Consensus 120 alvfs~~~~~~~~aK~l~~f~K~~~~~~l~l~gg~veg~~l~~~~v~~lakLPs~e~l~aqlv~~L~~p~~~l~~~L~~~ 199 (220)
+++|++ +||.+++|++.+|+|+++ ++.++||++||+++|.++|++||+|||+|+|+++|+|+|++|+++
T Consensus 81 ai~fs~-~dp~~~aK~l~~f~K~~~--~l~ikgg~~eg~~~~~~~v~~la~LPs~eel~a~l~g~l~ap~~~-------- 149 (165)
T 3sgf_H 81 LIAYSM-EHPGAAARLFKEFAKANA--KFEVKAAAFEGELIPASQIDRLATLPTYEEAIARLMATMKEASAG-------- 149 (165)
T ss_dssp CCCEEE-ECSSCSHHHHHHHHHHGG--GSSSCCTTCCCCTTTTCCCCCCCTTTTTTCTHHHHTTTTTTTSTT--------
T ss_pred EEEEeC-CCHHHHHHHHHHHHHhCC--CcEEEEEEEcCEEeCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH--------
Confidence 999997 456678999999999985 689999999999999999999999999999999999999999871
Q ss_pred HHHHHHHHHHHHHhhhh
Q 027713 200 ARDLLMVLKAYAKKLED 216 (220)
Q Consensus 200 ~~~L~~~L~~~~~k~e~ 216 (220)
+|+++|+++++|+|+
T Consensus 150 --~l~~~l~a~~~~k~~ 164 (165)
T 3sgf_H 150 --KLVRTLAAVRDAKEA 164 (165)
T ss_dssp --TTTTTTTSGGGTCC-
T ss_pred --HHHHHHHHHHHhhcc
Confidence 455556667777654
No 4
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB: 1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I* 1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I* 1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Probab=99.87 E-value=2.7e-23 Score=187.17 Aligned_cols=127 Identities=20% Similarity=0.277 Sum_probs=28.9
Q ss_pred chhhhccChhHHHHHHHHHHHHHhcCCeEEEEEeCCCChhhHHHHHHhcCCCCEEEEEchHHHHHHHhcCC--ccccccc
Q 027713 37 THIRAAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQ--WEALKPC 114 (220)
Q Consensus 37 ~~~~~a~~r~~K~~~v~~l~e~l~~s~~v~vv~y~gl~~~~~~~LR~~Lr~~~~l~VvKNtL~k~Al~~t~--~~~L~~~ 114 (220)
+++.|.+.+++|.++|++|++.|++|+.++++||+||+++++++||++||+.++++|+|||||++|+++++ ++.|.++
T Consensus 5 ~~~~~k~~~e~K~~~V~eL~e~l~~~~~v~vvdy~GLtv~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~le~L~~~ 84 (348)
T 1vq8_G 5 SERKTETIPEWKQEEVDAIVEMIESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERALDDVDDGLEDLNGY 84 (348)
T ss_dssp -------CCHHHHHHHHHHHHHHHC---------------------------------CHHHHHHHHTC-----------
T ss_pred hhhcccccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHHhcceEEEeHHHHHHHHHHhCCcchHHHHHh
Confidence 56778999999999999999999999999999999999999999999999889999999999999999998 8999999
Q ss_pred ccCceEEEEeecCChhHHhHHHHHHHhhcCcCCcceeeeeeCCeecCHhhHHHh
Q 027713 115 MSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKAL 168 (220)
Q Consensus 115 l~G~talvfs~~~~~~~~aK~l~~f~K~~~~~~l~l~gg~veg~~l~~~~v~~l 168 (220)
|+|+++++|++ +||.+++|++.+|.+.. +...|++.++.++-+.+...+
T Consensus 85 LkG~tal~Ft~-~Dp~~vaK~l~~f~~~~----pAr~GaiAp~dV~IpaG~t~~ 133 (348)
T 1vq8_G 85 ITGQVGLIGTD-DNPFSLFQELEASKTPA----PIGAGEVAPNDIVIPEGDTGV 133 (348)
T ss_dssp ------------------------------------------------------
T ss_pred ccCCEEEEEeC-CCHHHHHHHHHHhcccc----hhhcCCcCCceEEeCCCCCCC
Confidence 99999999997 56778999999997543 578999999999988887554
No 5
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8
Probab=99.85 E-value=2.7e-21 Score=172.05 Aligned_cols=115 Identities=23% Similarity=0.345 Sum_probs=93.0
Q ss_pred hccChhHHHHHHHHHHHHHhcCCeEEEEEeCCCChhhHHHHHHhcCCCCEEEEEchHHHHHHHhc-----CCcccccccc
Q 027713 41 AAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEG-----TQWEALKPCM 115 (220)
Q Consensus 41 ~a~~r~~K~~~v~~l~e~l~~s~~v~vv~y~gl~~~~~~~LR~~Lr~~~~l~VvKNtL~k~Al~~-----t~~~~L~~~l 115 (220)
|+++|++|.++|++|++.|++|+.++|+||+|++++|+++||++||+.+.++|+|||||++|+++ ++++.|.++|
T Consensus 1 M~~~re~K~~~v~el~e~l~~~~~v~vv~~~gl~v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~~~~le~L~~~L 80 (312)
T 3u5i_q 1 MGGIREKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPDFEKLLPFV 80 (312)
T ss_dssp --CHHHHHHHHHHHHHHHHHHCSEEEEEECSSCCHHHHHHHHHHHSSSCEEEECCHHHHHHHHHTTSSSSCGGGGTGGGC
T ss_pred CCCcHHHHHHHHHHHHHHHHhCCEEEEEecCCCCHHHHHHHHHHHhcCceEEEeehHHHHHHHhhCcccccChHHHHHhc
Confidence 78899999999999999999999999999999999999999999998889999999999999999 5899999999
Q ss_pred cCceEEEEeecCChhHHhHHHHHHHhhcCcCCcceeeeeeCCeec
Q 027713 116 SGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFY 160 (220)
Q Consensus 116 ~G~talvfs~~~~~~~~aK~l~~f~K~~~~~~l~l~gg~veg~~l 160 (220)
+|+++++|++ +||.+++|+|.+|.... ..-.|.+....++
T Consensus 81 ~G~~gl~Ft~-~dp~~v~k~l~~~k~~~----pAr~GaiAp~dV~ 120 (312)
T 3u5i_q 81 KGNVGFVFTN-EPLTEIKNVIVSNRVAA----PARAGAVAPEDIW 120 (312)
T ss_dssp CSSEEEEEES-SCHHHHHHHHHTSSCCC-----------------
T ss_pred cCCEEEEEEC-CCHHHHHHHHHhccCcc----cccCCCcCCceEE
Confidence 9999999997 57888999998884321 2344444444443
No 6
>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}
Probab=99.84 E-value=4.7e-21 Score=162.28 Aligned_cols=95 Identities=20% Similarity=0.241 Sum_probs=90.3
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEEeCCCChhhHHHHHHhcCCCCEEEEEchHHHHHHHhcC-------CcccccccccC
Q 027713 45 RTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGT-------QWEALKPCMSG 117 (220)
Q Consensus 45 r~~K~~~v~~l~e~l~~s~~v~vv~y~gl~~~~~~~LR~~Lr~~~~l~VvKNtL~k~Al~~t-------~~~~L~~~l~G 117 (220)
+++|.++|++|++.+++|+.++++||+|++++|+++||++||++++++|+|||||++|++++ +++.|.++|+|
T Consensus 2 ~e~K~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~~~~~v~KNtL~r~Al~~~~~~e~~~~~~~L~~~l~G 81 (213)
T 3jsy_A 2 APWKIEEVKTLKGLIKSKPVVAIVDMMDVPAPQLQEIRDKIRDKVKLRMSRNTLIIRALKEAAEELNNPKLAELANYVER 81 (213)
T ss_dssp CHHHHHHHHHHHHHHHHSSEEEEEECCSCCHHHHHHHHHHHTTTEEEEECCHHHHHHHHHHHHHHTTCGGGGGGGGGCCS
T ss_pred chHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhCCCEEEEEeHHHHHHHHhhchhhhcccchhHHHHhCcC
Confidence 48999999999999999999999999999999999999999988899999999999999998 89999999999
Q ss_pred ceEEEEeecCChhHHhHHHHHHH
Q 027713 118 MNAWLFVHTEEIPAAIKPYRNFQ 140 (220)
Q Consensus 118 ~talvfs~~~~~~~~aK~l~~f~ 140 (220)
+++++|++ +||.+++|+|.+|.
T Consensus 82 ~~~l~Ft~-~dp~~v~k~l~~~~ 103 (213)
T 3jsy_A 82 GAAILVTD-MNPFKLYKLLEENK 103 (213)
T ss_dssp SEEEEEES-SCHHHHHHHHHHSC
T ss_pred CeEEEEeC-CCHHHHHHHHHHcC
Confidence 99999997 57888999999884
No 7
>3a1y_G Acidic ribosomal protein P0; stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=99.84 E-value=4.7e-22 Score=174.95 Aligned_cols=120 Identities=20% Similarity=0.198 Sum_probs=92.3
Q ss_pred ccChhHHHHHHHHHHHHHhcCCeEEEEEeCCCChhhHHHHHHhcCCC-CEEEEEchHHHHHHHhcCC-------cccccc
Q 027713 42 AISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPEN-TKLIVAKNTLVYKAIEGTQ-------WEALKP 113 (220)
Q Consensus 42 a~~r~~K~~~v~~l~e~l~~s~~v~vv~y~gl~~~~~~~LR~~Lr~~-~~l~VvKNtL~k~Al~~t~-------~~~L~~ 113 (220)
...+++|.++|++|++.|++|+.++++||+|++++|+++||++||+. ++++|+|||||++|+++++ +++|.+
T Consensus 2 ~~~~e~K~~~v~el~~~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~g~~~~v~KNtL~~~Al~~~~~~~~~~~~~~L~~ 81 (284)
T 3a1y_G 2 AHVAEWKKKEVEELAKLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAKELGKPELEKLVE 81 (284)
T ss_dssp CSSCCCTTTHHHHHHHHHTTCSEEEEEECTTCCHHHHHHHHHHHHHTTEEEEECSSSSCCHHHHHHHTTCSCSSTTSSSC
T ss_pred CCcHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHhcCcEEEEeHHHHHHHHHhhCccccccccHHHHhh
Confidence 34679999999999999999999999999999999999999999976 8999999999999999976 899999
Q ss_pred cccCceEEEEeecCChhHHhHHHHHHHhhcCcCCcceeeeeeCCeecCHhhHH
Q 027713 114 CMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFK 166 (220)
Q Consensus 114 ~l~G~talvfs~~~~~~~~aK~l~~f~K~~~~~~l~l~gg~veg~~l~~~~v~ 166 (220)
+|+|+++++|++ +||.+++|++.+|... .+...|++.++.++-+.+-.
T Consensus 82 ~l~G~~al~Ft~-~dp~~vak~l~~f~~~----~~ar~Gaia~~dv~ip~g~~ 129 (284)
T 3a1y_G 82 YIDRGAGILVTN-MNPFKLYKFLQQNRQP----APAKPGAVVPKDVVVPAGPT 129 (284)
T ss_dssp CCCTTEEEEEES-SCHHHHHHHHHHCCCC------------------------
T ss_pred hcCCCEEEEEEC-CCHHHHHHHHHHhcch----hhhhcCCccceeEEecCCCC
Confidence 999999999997 5788899999998533 46789999999988776663
No 8
>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.80 E-value=1.7e-20 Score=168.70 Aligned_cols=99 Identities=20% Similarity=0.217 Sum_probs=89.4
Q ss_pred hccChhHHHHHHHHHHHHHhcCCeEEEEEeCCCChhhHHHHHHhcCCC-CEEEEEchHHHHHHHhcC-------Cccccc
Q 027713 41 AAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPEN-TKLIVAKNTLVYKAIEGT-------QWEALK 112 (220)
Q Consensus 41 ~a~~r~~K~~~v~~l~e~l~~s~~v~vv~y~gl~~~~~~~LR~~Lr~~-~~l~VvKNtL~k~Al~~t-------~~~~L~ 112 (220)
|...+++|.++|++|++.|++|+.++|+||+|++++|+++||++||+. ++++|+|||||++|++++ +++.|.
T Consensus 1 m~~~~e~K~~~v~el~e~l~~~~~v~v~~~~gl~v~ql~~lR~~lr~~g~~~~v~KNtL~r~Al~~~~~~e~~~~l~~L~ 80 (339)
T 3j21_k 1 MAHVAEWKKKEVEELANLIKSYPVVALVDVSSMPAYPLSQMRRLIRENNGLLRVSRNTLIELAIKKVAQELGKPELEKLI 80 (339)
T ss_dssp -----CCTTTHHHHHHHHHHHSSEEEEEECTTCCTTHHHHHHHHHHHTTEEEECCHHHHSCHHHHHHHSSCCCSSSSSSS
T ss_pred CCccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhcCCeEEEEEhHHHHHHHHhcChhhhccccHHHHH
Confidence 567789999999999999999999999999999999999999999987 899999999999999987 689999
Q ss_pred ccccCceEEEEeecCChhHHhHHHHHHH
Q 027713 113 PCMSGMNAWLFVHTEEIPAAIKPYRNFQ 140 (220)
Q Consensus 113 ~~l~G~talvfs~~~~~~~~aK~l~~f~ 140 (220)
++|+|+++++|++ +||.+++|+|.+|.
T Consensus 81 ~~L~G~~~l~Ft~-~dp~~v~k~l~~~~ 107 (339)
T 3j21_k 81 NYIEGGAGILVTT-MNPFKLYKFLQQNR 107 (339)
T ss_dssp CCCCTTEEEEEES-SCHHHHHHHHHHSC
T ss_pred HHhcCCeEEEEEC-CCHHHHHHHHHHcC
Confidence 9999999999997 67888999999883
No 9
>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.79 E-value=8e-21 Score=169.32 Aligned_cols=117 Identities=22% Similarity=0.255 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHHHhcCCeEEEEEeCCCChhhHHHHHHhcCCCCEEEEEchHHHHHHHhcC-----CcccccccccCc
Q 027713 44 SRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGT-----QWEALKPCMSGM 118 (220)
Q Consensus 44 ~r~~K~~~v~~l~e~l~~s~~v~vv~y~gl~~~~~~~LR~~Lr~~~~l~VvKNtL~k~Al~~t-----~~~~L~~~l~G~ 118 (220)
.+++|.++|++|++.|++|+.++|+||+||+++|+++||++||+.++++|+|||||++|++++ +++.|.++|+|+
T Consensus 6 ~~e~K~~~V~eL~e~l~~~~~v~vvd~~gl~v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~~~~~e~L~~~L~G~ 85 (317)
T 2zkr_g 6 RATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKLLPHIRGN 85 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHhcCcEEEEEeHHHHHHHHhhCcccccchhhhhhccCCC
Confidence 468999999999999999999999999999999999999999988999999999999999999 899999999999
Q ss_pred eEEEEeecCChhHHhHHHHHHHhhcCcCCcceeeeeeCCeecCHhhH
Q 027713 119 NAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDF 165 (220)
Q Consensus 119 talvfs~~~~~~~~aK~l~~f~K~~~~~~l~l~gg~veg~~l~~~~v 165 (220)
++++|++ +|+.+++|++.+|+... +...|.+.+..++=+.+-
T Consensus 86 ~al~Ft~-~Dp~~vaK~l~~f~~~~----pAr~GaiAp~dV~Ip~G~ 127 (317)
T 2zkr_g 86 VGFVFTK-EDLTEIRDMLLANKVPA----AARAGAIAPCEVTVPAQN 127 (317)
T ss_dssp -----------------------------------------------
T ss_pred EEEEEEC-CCHHHHHHHHHHhCccc----hhccCCcCCceEEeCCCC
Confidence 9999997 56778999999986443 345666666655544333
No 10
>3iz5_s 60S acidic ribosomal protein P0 (L10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_s
Probab=99.78 E-value=4.5e-20 Score=164.62 Aligned_cols=95 Identities=17% Similarity=0.284 Sum_probs=89.9
Q ss_pred ChhHHHHHHHHHHHHHhcCCeEEEEEeCCCChhhHHHHHHhcCCCCEEEEEchHHHHHHHhcC-------Cccccccccc
Q 027713 44 SRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGT-------QWEALKPCMS 116 (220)
Q Consensus 44 ~r~~K~~~v~~l~e~l~~s~~v~vv~y~gl~~~~~~~LR~~Lr~~~~l~VvKNtL~k~Al~~t-------~~~~L~~~l~ 116 (220)
.+++|.++|++|++.|++|+.++|+||+|++++|+++||++||++++++|+|||||++|++++ +++.|.++|+
T Consensus 7 ~~e~K~~~v~el~e~l~~y~~v~vv~~~gl~v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~e~~~~~~le~L~~~L~ 86 (319)
T 3iz5_s 7 KAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKEFLELMPLLV 86 (319)
T ss_dssp SCCCSSHHHHHHHHHHHHCSEEEEEECTTSCHHHHHHHHHHHHHHSCEECCSTTTCCHHHHHHHSSSCCSSSSSSSCCCC
T ss_pred hHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhCCcEEEEEhHHHHHHHHhhchhhhccccHHHHHHHhc
Confidence 478999999999999999999999999999999999999999977899999999999999987 7999999999
Q ss_pred CceEEEEeecCChhHHhHHHHHH
Q 027713 117 GMNAWLFVHTEEIPAAIKPYRNF 139 (220)
Q Consensus 117 G~talvfs~~~~~~~~aK~l~~f 139 (220)
|+++++|++ +||.+++|+|.+|
T Consensus 87 G~~gl~FT~-~dp~~v~k~l~~~ 108 (319)
T 3iz5_s 87 GNVGLIFTK-GDLKEVREEVAKY 108 (319)
T ss_dssp TTEEEEEES-SCHHHHHHHHHHS
T ss_pred CCeEEEEEC-CChHHHHHHHHHc
Confidence 999999997 5788899999987
No 11
>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: d.58.62.1 PDB: 1zaw_A 1zax_A
Probab=54.35 E-value=11 Score=30.02 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHhh
Q 027713 187 GSAIGLVGTLQAPARDLLMVLKAYAKKL 214 (220)
Q Consensus 187 ~p~~~l~~~L~~~~~~L~~~L~~~~~k~ 214 (220)
.-.++++++|++|.++++++|++...+.
T Consensus 140 el~a~l~g~l~ap~~~l~~~l~~~~~~l 167 (180)
T 1zav_A 140 ELYAMLVGRVKAPITGLVFALSGILRNL 167 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446777777777777777777766553
No 12
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=52.71 E-value=3.5 Score=29.94 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=29.0
Q ss_pred CeEEEEEeCCCChhhHHHHHHhcCCC-CEEEEEc
Q 027713 63 HLIAAIKYKGFTVKQFQDLRRSLPEN-TKLIVAK 95 (220)
Q Consensus 63 ~~v~vv~y~gl~~~~~~~LR~~Lr~~-~~l~VvK 95 (220)
--.+++||=++..+.+.+||++|-+. ++++|++
T Consensus 57 lEaii~dYvnv~~dr~~klkkkLVGKtIkVqVIR 90 (102)
T 1jjg_A 57 HECILLDYLNYRQDTLDRLKERLVGRVIKTRVVR 90 (102)
T ss_dssp CEEEECTTCCSSCCCCCHHHHHHTTCEEEEEEEE
T ss_pred ceeeeehhhhhhHHHHHHHHHHhcCceEEEEEEE
Confidence 45678899999999999999999877 8999987
No 13
>2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_J 3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I 3ms1_I 3pyt_I 3pyr_I 3pyo_I 3pyv_I
Probab=52.69 E-value=11 Score=29.73 Aligned_cols=25 Identities=44% Similarity=0.590 Sum_probs=13.8
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHh
Q 027713 189 AIGLVGTLQAPARDLLMVLKAYAKK 213 (220)
Q Consensus 189 ~~~l~~~L~~~~~~L~~~L~~~~~k 213 (220)
.++++++|++|.++++++|++...+
T Consensus 135 ~a~l~g~l~ap~~~~~~~l~~~~~~ 159 (173)
T 2j01_J 135 RAELVGVLQAPMAELVGVLGGVARE 159 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3455555555555555555555443
No 14
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=45.90 E-value=17 Score=27.87 Aligned_cols=66 Identities=11% Similarity=0.117 Sum_probs=34.5
Q ss_pred CCCCchhhhccChhHHHHHHHHHHHHHhcCCeEEEEEeCCCChhhHHHHHHhcCCC--CEEEEEchHHHHHHHhc
Q 027713 33 KPPPTHIRAAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPEN--TKLIVAKNTLVYKAIEG 105 (220)
Q Consensus 33 ~~~~~~~~~a~~r~~K~~~v~~l~e~l~~s~~v~vv~y~gl~~~~~~~LR~~Lr~~--~~l~VvKNtL~k~Al~~ 105 (220)
+.+++.+||....+.+..+++-..++|.+.. |.++|..++.+- -.+... ....=-|..|+.-++..
T Consensus 15 ~~~~~~~R~~r~~~~r~~Il~aa~~lf~~~G------~~~~tv~~IA~~-agvs~~t~Y~~F~sK~~Ll~~~~~~ 82 (215)
T 2qko_A 15 ENLYFQGHMAQNPERRAALVNAAIEVLAREG------ARGLTFRAVDVE-ANVPKGTASNYFPSRDDLFDQVGKR 82 (215)
T ss_dssp ------------CHHHHHHHHHHHHHHHHTC------TTTCCHHHHHHH-SSSTTTCHHHHCSCHHHHHHHHHHH
T ss_pred hhhhhcccccccHHHHHHHHHHHHHHHHHhC------hhhccHHHHHHH-cCCCcchHHHhCCCHHHHHHHHHHH
Confidence 3344445555566889999999999999864 677877776542 112222 11222466777666654
No 15
>1kbh_B CREB-binding protein, nuclear receptor coactivator; nuclear hormone receptors, ACTR, CBP, transcription; NMR {Mus musculus} SCOP: a.153.1.1 PDB: 2c52_A 2kkj_A 2l14_A
Probab=35.92 E-value=64 Score=21.03 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHhhchHHHHHHHHHHHHHhhhh
Q 027713 176 EIYAKLLGALQGSAI-----GLVGTLQAPARDLLMVLKAYAKKLED 216 (220)
Q Consensus 176 ~l~aqlv~~L~~p~~-----~l~~~L~~~~~~L~~~L~~~~~k~e~ 216 (220)
..+.+|+.+|.+|.+ ++.+.|.+.++-++.-+++...+-..
T Consensus 8 ~aLqqLl~tlksp~speqqqqvl~ILksNPqLMAAfIKQR~~~~~~ 53 (59)
T 1kbh_B 8 SALQDLLRTLKSPSSPQQQQQVLNILKSNPQLMAAFIKQRTAKYVA 53 (59)
T ss_dssp THHHHHHHHHHSCTTTTCSTHHHHHHTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhc
Confidence 356789999998875 79999999999999999987766443
No 16
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=29.60 E-value=45 Score=23.98 Aligned_cols=71 Identities=15% Similarity=0.111 Sum_probs=51.3
Q ss_pred HHHHHHHhcCCeEEEEEeCCCChhhHHHHHHhcCCC--CEEEEEchHHH-HHHHh-----cCCcccccccccCceEEEEe
Q 027713 53 DTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPEN--TKLIVAKNTLV-YKAIE-----GTQWEALKPCMSGMNAWLFV 124 (220)
Q Consensus 53 ~~l~e~l~~s~~v~vv~y~gl~~~~~~~LR~~Lr~~--~~l~VvKNtL~-k~Al~-----~t~~~~L~~~l~G~talvfs 124 (220)
+.|+..-.+-+-++.+-=+|+|.+-+.++...|..+ ++++|.+|.-. +..+. .++-+-+ ...|.++++|=
T Consensus 9 ~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~V--q~IG~~~vLyR 86 (98)
T 1jo0_A 9 QFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQV--QTIGHILVLYR 86 (98)
T ss_dssp HHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEE--EEETTEEEEEC
T ss_pred HHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEE--EEECCEEEEEc
Confidence 456666677778899999999999999999999755 89999987532 22222 2333322 36799999985
Q ss_pred e
Q 027713 125 H 125 (220)
Q Consensus 125 ~ 125 (220)
.
T Consensus 87 ~ 87 (98)
T 1jo0_A 87 P 87 (98)
T ss_dssp C
T ss_pred c
Confidence 4
No 17
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=26.83 E-value=1.5e+02 Score=19.95 Aligned_cols=63 Identities=3% Similarity=0.105 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCC-eEEEEEeCCCChhh------HHHHHHhcCC-CCEEEEEc-hHHHHHHHhcCCcccccc
Q 027713 51 TVDTVKTHLENCH-LIAAIKYKGFTVKQ------FQDLRRSLPE-NTKLIVAK-NTLVYKAIEGTQWEALKP 113 (220)
Q Consensus 51 ~v~~l~e~l~~s~-~v~vv~y~gl~~~~------~~~LR~~Lr~-~~~l~VvK-NtL~k~Al~~t~~~~L~~ 113 (220)
+.+.+.+.+.... ..+++|.++++--+ +..+++++++ ++.+.+.. +.-++..++.+++..+.+
T Consensus 31 l~~~l~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~ 102 (110)
T 1sbo_A 31 LKEQLRNFISTTSKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFILSSLKESISRILKLTHLDKIFK 102 (110)
T ss_dssp HHHHHHTHHHHCSCSEEEEECTTCCCBCHHHHHHHHHHHHHHHHTTCEEEEESCCHHHHHHHHHTTCGGGSC
T ss_pred HHHHHHHHHhcCCCcEEEEECCCCcEEccHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhCccceee
Confidence 3445556665554 46799999988655 4455677754 46776654 778889999998876543
No 18
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=25.73 E-value=31 Score=24.59 Aligned_cols=17 Identities=35% Similarity=0.413 Sum_probs=13.1
Q ss_pred CCCCCCCCCCCCCCCCC
Q 027713 17 KPSTNPLFHFHPSKRSK 33 (220)
Q Consensus 17 ~~~~~~~~~~~~~~~~~ 33 (220)
-|.++|+.-+||+++.+
T Consensus 86 lP~~LP~~l~pps~r~~ 102 (106)
T 1eh2_A 86 VPMSLPPALVPPSKRKT 102 (106)
T ss_dssp CCSSCCTTTSCTTCC--
T ss_pred CCCCCCcccCChhhccc
Confidence 48899999999988743
No 19
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=24.15 E-value=60 Score=27.23 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=34.1
Q ss_pred HHHhcCCeEEEEEeCC--CChhhHHHHHHhcCCCCEEEEEch
Q 027713 57 THLENCHLIAAIKYKG--FTVKQFQDLRRSLPENTKLIVAKN 96 (220)
Q Consensus 57 e~l~~s~~v~vv~y~g--l~~~~~~~LR~~Lr~~~~l~VvKN 96 (220)
+.|+++..|++.|+.. ++.+++..||.-.+..+.+.|+..
T Consensus 46 ~~L~~yDvIIl~d~~~~~l~~~~~~~L~~yV~~GGgLi~~gG 87 (259)
T 3rht_A 46 ELLAKQDLVILSDYPAERMTAQAIDQLVTMVKAGCGLVMLGG 87 (259)
T ss_dssp HHHHTCSEEEEESCCGGGBCHHHHHHHHHHHHTTCEEEEECS
T ss_pred hHHhcCCEEEEcCCccccCCHHHHHHHHHHHHhCCeEEEecC
Confidence 4688999999998764 999999999999988888888753
No 20
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=23.94 E-value=1.3e+02 Score=21.43 Aligned_cols=62 Identities=10% Similarity=0.002 Sum_probs=43.2
Q ss_pred HHHHHHH-HHhcCCeEEEEEeCCCChhhHH------HHHHhcCC-CCEEEEEc-hHHHHHHHhcCCccccc
Q 027713 51 TVDTVKT-HLENCHLIAAIKYKGFTVKQFQ------DLRRSLPE-NTKLIVAK-NTLVYKAIEGTQWEALK 112 (220)
Q Consensus 51 ~v~~l~e-~l~~s~~v~vv~y~gl~~~~~~------~LR~~Lr~-~~~l~VvK-NtL~k~Al~~t~~~~L~ 112 (220)
+-+.+.+ .+......+++|+++++--+-. .+++++++ ++.+.++. +.-+++.++.+++..+.
T Consensus 39 l~~~l~~~~~~~~~~~vvlDls~V~~iDSsGl~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~ 109 (125)
T 2ka5_A 39 FKKWVFDEFLNKGYNKIFLVLSDVESIDSFSLGVIVNILKSISSSGGFFALVSPNEKVERVLSLTNLDRIV 109 (125)
T ss_dssp HHHHHHHHTTTTTCCEEEEECTTCSCCCHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHTTSTTTS
T ss_pred HHHHHHHHHhhCCCCEEEEECCCCCEEcHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCceE
Confidence 4455555 5555556799999998865544 45666654 47777765 88888999999877543
No 21
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=20.39 E-value=61 Score=22.66 Aligned_cols=61 Identities=10% Similarity=0.083 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCCeEEEEEeCCCChhh------HHHHHHhcCCC-CEEEEEc-hHHHHHHHhcCCccccc
Q 027713 51 TVDTVKTHLENCHLIAAIKYKGFTVKQ------FQDLRRSLPEN-TKLIVAK-NTLVYKAIEGTQWEALK 112 (220)
Q Consensus 51 ~v~~l~e~l~~s~~v~vv~y~gl~~~~------~~~LR~~Lr~~-~~l~VvK-NtL~k~Al~~t~~~~L~ 112 (220)
+-+.+.+.+.... .+++|+++++--+ +..+++++++. +.+.+.. +.-+++.++.+|+..+.
T Consensus 31 l~~~l~~~~~~~~-~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~ 99 (117)
T 4hyl_A 31 VQAAVLPRVTAKG-KMILDLREVSYMSSAGLRVLLSLYRHTSNQQGALVLVGVSEEIRDTMEITGFWNFF 99 (117)
T ss_dssp HHHHHGGGCCTTC-EEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHTCGGGC
T ss_pred HHHHHHHHHccCC-eEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhCcccee
Confidence 4445555666666 8999999987543 44556777644 6777654 77888999999876543
Done!