BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027714
(220 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q940P5|TET19_ARATH Tetraspanin-19 OS=Arabidopsis thaliana GN=At2g20740 PE=2 SV=1
Length = 221
Score = 209 bits (531), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 99/205 (48%), Positives = 133/205 (64%)
Query: 1 MERIAITCLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICS 60
M RI +CLQS LK +N ++G+VGI+MILY +W+IR WQ M F D PWFI S
Sbjct: 1 MVRIVRSCLQSMLKLVNSLIGMVGIAMILYAVWLIRQWQEQMGNLPFADSDHPVPWFIYS 60
Query: 61 FIGIGVTFCLITCLGHIAAASANGFCLSFYMLITCLLLLLETAIAADIQLNSEWEKDLPD 120
F+G+G C++TC GHIAA + NG CL YM LL ++E + ADI LN +W+KD P+
Sbjct: 61 FLGLGAILCVVTCAGHIAAETVNGCCLYLYMGFIVLLTMVEGGVVADIFLNRDWKKDFPE 120
Query: 121 DPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSALLAMALRALGSNQGYSYDNDGEFLS 180
DP+G FH F KF++SNF I KWIG+ I+ Q S L+AM L+ALG + YD+D E+
Sbjct: 121 DPSGAFHQFSKFIESNFKICKWIGLSIVCVQGLSVLIAMLLKALGPHPHRHYDSDDEYNV 180
Query: 181 DRLPLINHQVQAPAYVIGDPPFAAK 205
+ L+ Q P YV+G+P + AK
Sbjct: 181 STVALLQDARQPPPYVVGEPMYGAK 205
>sp|Q93XY5|TET18_ARATH Tetraspanin-18 OS=Arabidopsis thaliana GN=At2g20230 PE=2 SV=1
Length = 270
Score = 123 bits (309), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 101/199 (50%), Gaps = 42/199 (21%)
Query: 11 SFLKALNLIMGIVGISMILYGIWMIRVWQRDME-----------------------GQSF 47
S LK LN + +G+S+I+Y IWM+ + R +
Sbjct: 12 STLKILNFVQAFIGVSIIIYSIWMLHEYSRHLPVDPPPSASSSSGTEIATSVSEPLKNPI 71
Query: 48 DDFCSI-------------------NPWFICSFIGIGVTFCLITCLGHIAAASANGFCLS 88
D SI PWFI SF+ +G+ C++T +G IAA + NG CL
Sbjct: 72 DFVASIILGSNGGDHGFNLRSLDLPAPWFIYSFMAVGILVCIVTFIGFIAAEAINGCCLC 131
Query: 89 FYMLITCLLLLLETAIAADIQLNSEWEKDLPDDPTGRFHDFKKFVKSNFDIFKWIGIWII 148
FY ++ LL+LLE A+ A I ++ WEKDLP DPTG + F++ N DI KW+GI ++
Sbjct: 132 FYSILKTLLILLEAALVAYIAIDRHWEKDLPYDPTGELSSLRAFIEENIDICKWVGIAVV 191
Query: 149 SAQVSSALLAMALRALGSN 167
+ Q+ S LLAM LRA+ S
Sbjct: 192 AVQLLSLLLAMVLRAMVST 210
>sp|Q9SVU4|TET20_ARATH Tetraspanin-20 OS=Arabidopsis thaliana GN=At4g28770 PE=2 SV=1
Length = 281
Score = 108 bits (270), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 82/124 (66%)
Query: 55 PWFICSFIGIGVTFCLITCLGHIAAASANGFCLSFYMLITCLLLLLETAIAADIQLNSEW 114
PWFI F+ IG+ C++T +G IAA + NG CL FY ++ LL+++E A+ I ++ W
Sbjct: 109 PWFIYCFMAIGILVCIVTIIGFIAAEAINGCCLCFYSILKTLLIIIEAALVGFIVIDRHW 168
Query: 115 EKDLPDDPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSALLAMALRALGSNQGYSYDN 174
EKDLP DPTG + + F++ N DI KW+GI +++ Q+ S LLA+ LRA+ S + D+
Sbjct: 169 EKDLPYDPTGELNSLRAFIEENIDICKWVGIVVVAIQLLSLLLALVLRAMVSPRQSELDD 228
Query: 175 DGEF 178
+ +F
Sbjct: 229 EDDF 232
>sp|Q68VK5|TSN5_RAT Tetraspanin-5 OS=Rattus norvegicus GN=Tspan5 PE=2 SV=2
Length = 268
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Query: 8 CLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVT 67
C++ F+ N+I +GI+ + G+W S D +P ++ F+ +G
Sbjct: 14 CIKYFIFGFNVIFWFLGITFLGIGLWAWNEKGVLSNISSITDLGGFDPVWL--FLVVGGV 71
Query: 68 FCLITCLGHIAAASANGFCLSFYMLITCLLLLLETAIAADIQLNSEWEKD 117
++ G I A N F L F+ + ++ LE + +W KD
Sbjct: 72 MFILGFAGCIGALRENTFLLKFFSVFLGIIFFLELTAGVLAFVFKDWIKD 121
>sp|P62080|TSN5_MOUSE Tetraspanin-5 OS=Mus musculus GN=Tspan5 PE=2 SV=1
Length = 268
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Query: 8 CLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVT 67
C++ F+ N+I +GI+ + G+W S D +P ++ F+ +G
Sbjct: 14 CIKYFIFGFNVIFWFLGITFLGIGLWAWNEKGVLSNISSITDLGGFDPVWL--FLVVGGV 71
Query: 68 FCLITCLGHIAAASANGFCLSFYMLITCLLLLLETAIAADIQLNSEWEKD 117
++ G I A N F L F+ + ++ LE + +W KD
Sbjct: 72 MFILGFAGCIGALRENTFLLKFFSVFLGIIFFLELTAGVLAFVFKDWIKD 121
>sp|P62079|TSN5_HUMAN Tetraspanin-5 OS=Homo sapiens GN=TSPAN5 PE=2 SV=1
Length = 268
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Query: 8 CLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVT 67
C++ F+ N+I +GI+ + G+W S D +P ++ F+ +G
Sbjct: 14 CIKYFIFGFNVIFWFLGITFLGIGLWAWNEKGVLSNISSITDLGGFDPVWL--FLVVGGV 71
Query: 68 FCLITCLGHIAAASANGFCLSFYMLITCLLLLLETAIAADIQLNSEWEKD 117
++ G I A N F L F+ + ++ LE + +W KD
Sbjct: 72 MFILGFAGCIGALRENTFLLKFFSVFLGIIFFLELTAGVLAFVFKDWIKD 121
>sp|Q17QJ5|TSN5_BOVIN Tetraspanin-5 OS=Bos taurus GN=TSPAN5 PE=2 SV=1
Length = 268
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Query: 8 CLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVT 67
C++ F+ N+I +GI+ + G+W S D +P ++ F+ +G
Sbjct: 14 CIKYFIFGFNVIFWFLGIAFLGIGLWAWNEKGVLSNISSITDLGGFDPVWL--FLVVGGV 71
Query: 68 FCLITCLGHIAAASANGFCLSFYMLITCLLLLLETAIAADIQLNSEWEKD 117
++ G I A N F L F+ + ++ LE + +W KD
Sbjct: 72 MFILGFAGCIGALRENTFLLKFFSVFLGIIFFLELTAGVLAFVFKDWIKD 121
>sp|Q7ZUB3|TSN31_DANRE Tetraspanin-31 OS=Danio rerio GN=tspan31 PE=2 SV=2
Length = 212
Score = 31.2 bits (69), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 13/117 (11%)
Query: 7 TCLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGV 66
TC ++ L +LN++ +VG+ +I+ W G+ F SI+ I I +G
Sbjct: 7 TCSKNALCSLNVVYMLVGLLLIVVAAW----------GKGFGIVSSIH--IIGGVIAVGF 54
Query: 67 TFCLITCLGHIAAASANGFCLSFYMLITCLLLLLETAIAAD-IQLNSEWEKDLPDDP 122
LI +G I A + L FYM+I ++ L + ++ + +N ++ L +
Sbjct: 55 FLQLIAIVGLIGAVHHHQVMLFFYMVILFVVFLFQFGVSCSCLAMNQGQQEKLLESS 111
>sp|O17821|SRD41_CAEEL Serpentine receptor class delta-41 OS=Caenorhabditis elegans
GN=srd-41 PE=3 SV=1
Length = 324
Score = 31.2 bits (69), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 63/133 (47%), Gaps = 10/133 (7%)
Query: 44 GQSFDDFCSINPWFIC--SFIGIGVTFCLITCLGHIAAASANGFCLSFYMLITCLLLLLE 101
G+ F+ F + + + S + G++ + L + AA + Y++ITC+LL L
Sbjct: 84 GRHFEAFVGYSLYHVVQTSTVASGISVVMTLFLKYEAARNVKLTSWKRYLIITCILLPLV 143
Query: 102 TAIAADIQLNSEWEKDLPDDPTGRFHDFKKFVKSNFDIFKWIGIWIISAQV-----SSAL 156
T++ +I L + LP++ R+ VK + + + ++++QV SS++
Sbjct: 144 TSVTLEIIL--IITQSLPNEIRERYKLINVDVKDH-SVVGTLNFKVLASQVNVCIMSSSV 200
Query: 157 LAMALRALGSNQG 169
+ + + L S +
Sbjct: 201 VMLPIIGLSSRRK 213
>sp|Q58DN3|TSN17_BOVIN Tetraspanin-17 OS=Bos taurus GN=TSPAN17 PE=2 SV=1
Length = 270
Score = 30.4 bits (67), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Query: 8 CLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVT 67
C + FL N++ ++G + G+W + D ++P ++ F+ +G
Sbjct: 16 CGKYFLFGFNIVFWVLGALFLAIGLWAWSEKGVLSNISALTDLGGLDPVWL--FVVVGGV 73
Query: 68 FCLITCLGHIAAASANGFCLSFYMLITCLLLLLETAIAADIQLNSEWEKD 117
++ G I A N F L F+ + L+ LE A + +W +D
Sbjct: 74 MSVLGFAGCIGALRENTFLLKFFSVFLGLIFFLELATGILAFVFKDWIRD 123
>sp|Q9CQ88|TSN31_MOUSE Tetraspanin-31 OS=Mus musculus GN=Tspan31 PE=1 SV=1
Length = 210
Score = 30.4 bits (67), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 13/114 (11%)
Query: 8 CLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVT 67
C ++ L ALN++ +VG +I W G+ SI+ I I +GV
Sbjct: 8 CSRNALCALNVVYMLVGFLLIGVAAW----------GKGLGVVSSIH--IIGGVIAVGVF 55
Query: 68 FCLITCLGHIAAASANGFCLSFYMLITCLLLLLETAIAAD-IQLNSEWEKDLPD 120
LI G + AA+ + L FYM+I L+ + + I+ + +N + D+ +
Sbjct: 56 LLLIAVAGLVGAANHHQVLLFFYMIILGLVFIFQFGISCSCLAINRNTQADVIN 109
>sp|Q32KU6|TSN6_BOVIN Tetraspanin-6 OS=Bos taurus GN=TSPAN6 PE=2 SV=1
Length = 245
Score = 30.4 bits (67), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 19/135 (14%)
Query: 6 ITCLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQ-SFDDFCSINPWFICSFIGI 64
ITC +S L I I G+ ++ GIW + +E S + + N F+ IG
Sbjct: 14 ITCFKSVLLIYTFIFWITGVILLAVGIW----GKVSLENYFSLLNEKATNVPFV--LIGT 67
Query: 65 GVTFCLITCLGHIAAASANGFCLSFYMLITCLLLLLETAIAADI----------QLNSEW 114
G L+ G A A+ + L Y + L+ L+E +AA I L + +
Sbjct: 68 GTVIILLGTFGCFATCRASAWMLKLYAMFLTLIFLVEL-VAAIIGFVFRHEIKNSLKNNY 126
Query: 115 EKDLPD-DPTGRFHD 128
EK L + TG +
Sbjct: 127 EKALKQYNATGDYRS 141
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.141 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,511,281
Number of Sequences: 539616
Number of extensions: 3363007
Number of successful extensions: 8412
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 8383
Number of HSP's gapped (non-prelim): 67
length of query: 220
length of database: 191,569,459
effective HSP length: 113
effective length of query: 107
effective length of database: 130,592,851
effective search space: 13973435057
effective search space used: 13973435057
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.3 bits)