Query 027714
Match_columns 220
No_of_seqs 179 out of 1037
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 14:04:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027714.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027714hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3882 Tetraspanin family int 99.9 1.6E-26 3.5E-31 197.6 15.3 164 1-169 1-232 (237)
2 PF00335 Tetraspannin: Tetrasp 99.7 6E-19 1.3E-23 145.0 -0.0 152 8-164 1-220 (221)
3 KOG4433 Tweety transmembrane/c 94.6 1.1 2.4E-05 42.4 13.4 39 62-100 214-252 (526)
4 PF15050 SCIMP: SCIMP protein 90.2 0.9 2E-05 35.2 5.6 32 131-163 2-33 (133)
5 PRK10263 DNA translocase FtsK; 88.0 23 0.00049 37.9 15.4 15 59-73 76-90 (1355)
6 cd03164 CD53_like_LEL Tetraspa 87.9 0.32 7E-06 34.5 1.7 21 121-141 66-86 (86)
7 PF04906 Tweety: Tweety; Inte 86.5 2.4 5.3E-05 39.4 7.1 34 66-99 194-227 (406)
8 PF07086 DUF1352: Protein of u 84.1 9.8 0.00021 31.8 8.8 84 14-111 41-124 (186)
9 PF04103 CD20: CD20-like famil 81.3 0.53 1.1E-05 36.6 0.3 68 19-99 5-72 (150)
10 PRK12585 putative monovalent c 81.0 27 0.00059 29.3 10.3 56 13-78 5-60 (197)
11 PF15345 TMEM51: Transmembrane 74.4 5.5 0.00012 34.3 4.5 17 58-74 61-77 (233)
12 PF05915 DUF872: Eukaryotic pr 72.6 11 0.00023 29.1 5.3 47 15-73 45-91 (115)
13 cd07912 Tweety_N N-terminal do 70.1 16 0.00034 34.4 6.8 39 62-100 213-251 (418)
14 PF10724 DUF2516: Protein of u 68.9 29 0.00063 26.0 6.8 29 10-38 2-30 (100)
15 PF06341 DUF1056: Protein of u 68.3 36 0.00078 23.4 6.7 49 6-74 4-52 (63)
16 PF04156 IncA: IncA protein; 67.0 12 0.00026 30.6 4.9 24 13-36 4-27 (191)
17 PF05640 NKAIN: Na,K-Atpase In 57.2 1.2E+02 0.0026 25.7 10.4 40 62-101 37-76 (200)
18 PF14995 TMEM107: Transmembran 57.2 32 0.0007 26.7 5.4 63 96-161 7-71 (124)
19 PF12273 RCR: Chitin synthesis 55.1 10 0.00022 29.4 2.3 24 141-164 1-24 (130)
20 PF01601 Corona_S2: Coronaviru 53.0 4.5 9.8E-05 39.4 0.0 17 54-70 546-562 (610)
21 cd03158 penumbra_like_LEL Tetr 52.6 9.6 0.00021 28.6 1.8 17 121-137 103-119 (119)
22 cd03166 CD63_LEL Tetraspanin, 51.8 7.6 0.00016 28.0 1.1 17 121-137 83-99 (99)
23 cd03167 oculospanin_like_LEL T 51.2 9.6 0.00021 28.8 1.6 17 121-137 104-120 (120)
24 cd03161 TM4SF2_6_like_LEL Tetr 50.2 10 0.00022 27.4 1.5 17 121-137 88-104 (104)
25 cd03163 TM4SF8_like_LEL Tetras 50.1 8.8 0.00019 27.9 1.2 17 121-137 88-104 (105)
26 cd03154 TM4SF3_like_LEL Tetras 49.9 12 0.00025 27.0 1.8 17 121-137 84-100 (100)
27 cd03165 NET-5_like_LEL Tetrasp 47.1 10 0.00022 27.1 1.1 17 121-137 82-98 (98)
28 PF09323 DUF1980: Domain of un 46.1 1.1E+02 0.0024 24.9 7.3 29 57-85 31-59 (182)
29 cd03152 CD9_LEL Tetraspanin, e 45.6 14 0.0003 26.0 1.6 17 121-137 68-84 (84)
30 PF13903 Claudin_2: PMP-22/EMP 45.2 1.3E+02 0.0028 23.2 7.4 29 60-88 73-102 (172)
31 cd03160 CD37_CD82_like_LEL Tet 44.9 9.8 0.00021 28.3 0.7 17 121-137 100-116 (117)
32 cd03159 TM4SF9_like_LEL Tetras 44.7 12 0.00026 28.2 1.2 17 121-137 105-121 (121)
33 cd03155 CD151_like_LEL Tetrasp 44.2 16 0.00035 26.7 1.9 15 123-137 96-110 (110)
34 PF06724 DUF1206: Domain of Un 42.1 32 0.00069 23.7 3.0 21 17-37 47-67 (73)
35 PF10176 DUF2370: Protein of u 41.6 37 0.00081 29.3 3.9 33 53-85 192-224 (233)
36 PF11127 DUF2892: Protein of u 41.4 69 0.0015 21.5 4.5 23 59-81 34-56 (66)
37 PRK12587 putative monovalent c 39.6 1.8E+02 0.0038 22.5 10.3 32 9-40 2-33 (118)
38 PF11297 DUF3098: Protein of u 39.4 67 0.0014 22.5 4.2 23 16-38 6-28 (69)
39 PF15125 TMEM238: TMEM238 prot 38.4 1E+02 0.0022 21.3 4.8 45 14-77 7-51 (65)
40 cd03156 uroplakin_I_like_LEL T 38.1 20 0.00044 26.1 1.5 17 121-137 98-114 (114)
41 PF10812 DUF2561: Protein of u 37.7 1.2E+02 0.0026 25.7 6.2 55 13-70 24-78 (207)
42 KOG3950 Gamma/delta sarcoglyca 36.2 53 0.0012 28.8 3.9 26 84-109 34-59 (292)
43 cd03127 tetraspanin_LEL Tetras 34.7 23 0.00049 24.4 1.3 17 121-137 74-90 (90)
44 PRK12586 putative monovalent c 34.2 2.4E+02 0.0053 22.5 10.8 29 12-40 7-35 (145)
45 PF11381 DUF3185: Protein of u 33.9 25 0.00054 23.9 1.3 55 17-75 4-58 (59)
46 KOG4812 Golgi-associated prote 32.1 61 0.0013 28.3 3.6 30 55-84 223-252 (262)
47 PF04156 IncA: IncA protein; 31.9 2.2E+02 0.0048 22.9 7.0 22 60-81 10-31 (191)
48 PF12273 RCR: Chitin synthesis 31.4 47 0.001 25.6 2.7 7 172-178 78-84 (130)
49 PF13706 PepSY_TM_3: PepSY-ass 31.4 82 0.0018 18.9 3.2 24 59-82 10-33 (37)
50 COG4993 Gcd Glucose dehydrogen 30.2 1.3E+02 0.0029 29.9 6.0 63 13-97 3-65 (773)
51 PF10731 Anophelin: Thrombin i 29.6 93 0.002 21.3 3.4 26 152-177 10-38 (65)
52 PF05478 Prominin: Prominin; 28.4 46 0.001 33.8 2.7 26 85-110 137-162 (806)
53 COG4298 Uncharacterized protei 28.2 1.9E+02 0.0042 21.2 5.1 20 15-34 18-37 (95)
54 PRK11901 hypothetical protein; 27.8 55 0.0012 29.7 2.8 24 59-82 37-60 (327)
55 KOG3658 Tumor necrosis factor- 27.4 88 0.0019 31.3 4.3 25 127-151 673-697 (764)
56 PRK07946 putative monovalent c 26.8 89 0.0019 25.6 3.6 22 16-37 3-24 (163)
57 PF10177 DUF2371: Uncharacteri 26.3 44 0.00096 26.7 1.7 24 12-35 41-64 (141)
58 PRK02935 hypothetical protein; 25.8 3E+02 0.0065 21.0 6.5 38 59-101 17-54 (110)
59 PRK06654 fliL flagellar basal 24.4 1.1E+02 0.0023 25.5 3.7 27 138-164 32-58 (181)
60 PF11014 DUF2852: Protein of u 24.1 77 0.0017 24.4 2.6 17 18-34 20-36 (115)
61 PF11359 gpUL132: Glycoprotein 24.0 2.1E+02 0.0045 24.6 5.3 27 135-161 49-75 (235)
62 PF08611 DUF1774: Fungal prote 24.0 2.1E+02 0.0046 21.4 4.8 8 180-187 90-97 (97)
63 PF12805 FUSC-like: FUSC-like 23.6 4.5E+02 0.0099 22.7 7.8 21 60-80 26-46 (284)
64 PF10873 DUF2668: Protein of u 23.4 4E+02 0.0087 21.5 8.1 20 131-150 52-73 (155)
65 PRK12585 putative monovalent c 21.0 1E+02 0.0023 25.9 3.0 21 57-77 8-28 (197)
66 PHA03283 envelope glycoprotein 20.9 1.9E+02 0.0041 28.0 5.1 8 172-179 461-468 (542)
67 PRK15033 tricarballylate utili 20.6 6.7E+02 0.015 23.4 8.4 14 18-31 275-288 (389)
68 PF13314 DUF4083: Domain of un 20.2 1.6E+02 0.0034 19.9 3.2 30 148-177 14-43 (58)
No 1
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=99.94 E-value=1.6e-26 Score=197.59 Aligned_cols=164 Identities=22% Similarity=0.285 Sum_probs=135.8
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCccCCCchhhhHHHHhHHHHHHHHHHHhhhHHh
Q 027714 1 MERIAITCLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVTFCLITCLGHIAAA 80 (220)
Q Consensus 1 M~~~~~~clK~lL~~~N~l~~l~Gl~li~~Giw~~~~~~~~~~~~~~~~~~~~~~~~i~~li~vG~il~~is~lGc~GA~ 80 (220)
|.+++.+|+|++++++|+++|++|++++++|+|+..+...+.+..+ ..... ..++++++|++++++|++||+||.
T Consensus 1 ~~~~~~~~~K~~lf~~N~~~~l~G~~ll~~giw~~~~~~~~~~~~~--~~~~~---~~~ili~~G~v~~~v~flGc~Ga~ 75 (237)
T KOG3882|consen 1 MMSCGSSCLKYLLFLLNLLFWLLGLLLLAVGIWLLADKGFLSSLLE--SDFLV---PAYILIAVGGVVFLVGFLGCCGAL 75 (237)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHHHHHhhhheeEeccchhhccc--cchhc---chhhhhhhhHHHHHHHHhhhhhhH
Confidence 3467899999999999999999999999999999887655433110 00011 236899999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhHhhcc---------------------------------------------cccc
Q 027714 81 SANGFCLSFYMLITCLLLLLETAIAADIQLN---------------------------------------------SEWE 115 (220)
Q Consensus 81 ~es~c~L~~Y~~ll~ll~llE~~~~~~~~~~---------------------------------------------~dW~ 115 (220)
|||+|+|.+|++++++++++|++++++.+.. .||.
T Consensus 76 ~es~~lL~~y~~~l~l~~i~e~~~~i~~~~~~~~l~~~~~~~~~~~~~~~y~~~~~~~~~~d~~Q~~~~CCG~~~~~~~~ 155 (237)
T KOG3882|consen 76 RESRCLLLSYFILLLLLFIAELAAGILAFVFRDSLRDELEEQLLKSIWNNYSSDPDLGEAWDKLQRELKCCGVNGYSDYF 155 (237)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhheeHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHhccCCcCCCchHHh
Confidence 9999999999999999999999998877632 1221
Q ss_pred c--C--CCC-------------------CCCChHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 027714 116 K--D--LPD-------------------DPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSALLAMALRALGSNQG 169 (220)
Q Consensus 116 ~--~--~P~-------------------~~~Gc~~~~~~~i~~~~~i~~~v~i~v~~~q~l~~ilA~~L~~~~~~~~ 169 (220)
+ . +|+ +.+||.+++++++++|+..+++++++++++|++++++|+.|....++++
T Consensus 156 ~~~~~~vP~SCC~~~~~~~~~~~~~~~~~~~GC~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~a~~l~~~i~~~~ 232 (237)
T KOG3882|consen 156 NCSSNNVPPSCCKRTRRQKFPQDVPDNIYTEGCLEKLSSWLESNLLIIGGVGLGIAVLELLGMILACCLANAIRNQR 232 (237)
T ss_pred cCCCCCCCcccCCCcccccccccchhhhhccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1 1 454 2579999999999999999999999999999999999999987776644
No 2
>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []. CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.
Probab=99.72 E-value=6e-19 Score=144.96 Aligned_cols=152 Identities=24% Similarity=0.384 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCccCCCchhhhHHHHhHHHHHHHHHHHhhhHHhhhhhhHH
Q 027714 8 CLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVTFCLITCLGHIAAASANGFCL 87 (220)
Q Consensus 8 clK~lL~~~N~l~~l~Gl~li~~Giw~~~~~~~~~~~~~~~~~~~~~~~~i~~li~vG~il~~is~lGc~GA~~es~c~L 87 (220)
|+|+++.++|++++++|++++++|+|+....+..... . . .......++++.+|+++++++++||+|+.++|+|++
T Consensus 1 c~k~~l~~~n~l~~l~g~~li~~g~~~~~~~~~~~~~--~-~--~~~~~~~~~~i~~G~~~~~~~~~G~~~~~~~~~~~l 75 (221)
T PF00335_consen 1 CLKYILFFLNVLFLLLGLALIGVGIWLLVNNQYLSEF--S-S--SFISYVIIILIFIGIFILIISFLGCIGACRKNRCLL 75 (221)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc--c-c--cchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccc
Confidence 7899999999999999999999999984221111110 0 0 011112356777999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhcc---------------------------------------------cccccCC----
Q 027714 88 SFYMLITCLLLLLETAIAADIQLN---------------------------------------------SEWEKDL---- 118 (220)
Q Consensus 88 ~~Y~~ll~ll~llE~~~~~~~~~~---------------------------------------------~dW~~~~---- 118 (220)
..|.+++++++++|+++++..+.. +||.+..
T Consensus 76 ~~y~~~~~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iq~~~~CCG~~~~~d~~~~~~~~~ 155 (221)
T PF00335_consen 76 IIYIILLILLFVLELVVGIVAFSYRDQLNSSLKDGLSLRCMKSYNSNESFSEAWDNIQEKFECCGVNSPDDWFTSKWSSC 155 (221)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHSSTT-CHHHHHHHHHHHHHT--SSTTCHHHHHHHHHT-
T ss_pred cccccchhhHHHHHHHHHHhhhhccccccccccccccchhhhccccccchhhheecccccccccCCCCCccccccccccc
Confidence 999999999999999887655431 1221100
Q ss_pred -------------------CCCCCChHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 027714 119 -------------------PDDPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSALLAMALRAL 164 (220)
Q Consensus 119 -------------------P~~~~Gc~~~~~~~i~~~~~i~~~v~i~v~~~q~l~~ilA~~L~~~ 164 (220)
+.+.+||.+++.++++++.....+++++++++|++++++|++|++.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~gC~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~l~~~ 220 (221)
T PF00335_consen 156 SSPDSCPDCQCPDDCSSENSIYTRGCYDKLREYLRSYLKYIGIVSLAILVLQLIGIILACCLCRH 220 (221)
T ss_dssp --------TCS-TTCCCCHCCTST-HHHHHHHHHCT-----------------------------
T ss_pred ccccccccccccccccccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 0146799999999999999999999999999999999999998653
No 3
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=94.58 E-value=1.1 Score=42.40 Aligned_cols=39 Identities=10% Similarity=0.101 Sum_probs=31.6
Q ss_pred HhHHHHHHHHHHHhhhHHhhhhhhHHHHHHHHHHHHHHH
Q 027714 62 IGIGVTFCLITCLGHIAAASANGFCLSFYMLITCLLLLL 100 (220)
Q Consensus 62 i~vG~il~~is~lGc~GA~~es~c~L~~Y~~ll~ll~ll 100 (220)
++.=.+.+++-++++.|-.|+|||.+..|++.-++.+++
T Consensus 214 v~lL~l~LvvC~v~vlglak~Skc~li~fsv~Gll~lvi 252 (526)
T KOG4433|consen 214 VLLLTLLLVVCLVLVLGLAKRSKCLLIVFSVCGLLALVI 252 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHH
Confidence 344567788888899999999999999999877766654
No 4
>PF15050 SCIMP: SCIMP protein
Probab=90.24 E-value=0.9 Score=35.23 Aligned_cols=32 Identities=22% Similarity=0.256 Sum_probs=22.5
Q ss_pred HHHHhccchhhhHHHHHHHHHHHHHHHHHHHHh
Q 027714 131 KFVKSNFDIFKWIGIWIISAQVSSALLAMALRA 163 (220)
Q Consensus 131 ~~i~~~~~i~~~v~i~v~~~q~l~~ilA~~L~~ 163 (220)
+|.++|+-++-+++|.++ --.+|+++-|+.|.
T Consensus 2 ~WWr~nFWiiLAVaII~v-S~~lglIlyCvcR~ 33 (133)
T PF15050_consen 2 SWWRDNFWIILAVAIILV-SVVLGLILYCVCRW 33 (133)
T ss_pred chHHhchHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 688999999998886543 34466776666543
No 5
>PRK10263 DNA translocase FtsK; Provisional
Probab=87.99 E-value=23 Score=37.94 Aligned_cols=15 Identities=7% Similarity=-0.029 Sum_probs=9.4
Q ss_pred HHHHhHHHHHHHHHH
Q 027714 59 CSFIGIGVTFCLITC 73 (220)
Q Consensus 59 ~~li~vG~il~~is~ 73 (220)
+.+++++++++.+.+
T Consensus 76 ~~LFGl~AYLLP~LL 90 (1355)
T PRK10263 76 FFIFGVMAYTIPVII 90 (1355)
T ss_pred HHHHhHHHHHHHHHH
Confidence 456777777766543
No 6
>cd03164 CD53_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD53_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD53 is a tetraspanin of the lymphoid-myeloid lineage and has been implicated in apoptosis protection. It associates with integrin alpha4beta1. Some of the cellular responses modulated by CD53 may be mediated by JNK activation and/or via the AKT pathway.
Probab=87.93 E-value=0.32 Score=34.53 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=18.0
Q ss_pred CCCChHHHHHHHHHhccchhh
Q 027714 121 DPTGRFHDFKKFVKSNFDIFK 141 (220)
Q Consensus 121 ~~~Gc~~~~~~~i~~~~~i~~ 141 (220)
+.+||.+++.+|+++|+.+++
T Consensus 66 ~~~GC~~~~~~~~~~~~~iig 86 (86)
T cd03164 66 KVEGCYKKLKNWFESNFLYTG 86 (86)
T ss_pred ccccHHHHHHHHHHHHHHHhC
Confidence 467999999999999988653
No 7
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=86.50 E-value=2.4 Score=39.40 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=25.3
Q ss_pred HHHHHHHHHhhhHHhhhhhhHHHHHHHHHHHHHH
Q 027714 66 VTFCLITCLGHIAAASANGFCLSFYMLITCLLLL 99 (220)
Q Consensus 66 ~il~~is~lGc~GA~~es~c~L~~Y~~ll~ll~l 99 (220)
++.+++.++++.|..|+|||.+.+++++-++.++
T Consensus 194 ~l~l~icl~~l~glar~Sk~~li~~~v~gll~lv 227 (406)
T PF04906_consen 194 ILDLVICLLGLLGLARQSKCLLIVFSVLGLLALV 227 (406)
T ss_pred HHHHHHHHHHHHHHHhcCcceEEEeeeccHHHHH
Confidence 4666677788899999999999877665544443
No 8
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=84.13 E-value=9.8 Score=31.78 Aligned_cols=84 Identities=15% Similarity=0.110 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccccccccCccCCCchhhhHHHHhHHHHHHHHHHHhhhHHhhhhhhHHHHHHHH
Q 027714 14 KALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVTFCLITCLGHIAAASANGFCLSFYMLI 93 (220)
Q Consensus 14 ~~~N~l~~l~Gl~li~~Giw~~~~~~~~~~~~~~~~~~~~~~~~i~~li~vG~il~~is~lGc~GA~~es~c~L~~Y~~l 93 (220)
+++++++++++++-++.+.-..++... ...|.+| .|. -.++ ++.+++|-.|--|.|.-.|..|++-
T Consensus 41 ~~~h~ll~l~~~a~v~~~~L~~i~~~~---------~p~p~~W-ey~-~~lS---~ip~~~G~~s~~rN~i~~l~~y~~~ 106 (186)
T PF07086_consen 41 ILFHALLWLLMAAKVSVDILLEISELQ---------IPSPYQW-EYI-WCLS---LIPSLLGLLSLRRNNISLLRLYMIG 106 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc---------cCChhHH-HHH-HHHH---HHHHHHHHHhcccchHHHHHHHHHH
Confidence 466777777777766666654333211 0013334 343 2223 4455666677777777888888776
Q ss_pred HHHHHHHHHHHHhHhhcc
Q 027714 94 TCLLLLLETAIAADIQLN 111 (220)
Q Consensus 94 l~ll~llE~~~~~~~~~~ 111 (220)
.+++-+.=+..++.-.+.
T Consensus 107 ~~~~gl~pl~~g~~~~~~ 124 (186)
T PF07086_consen 107 SSLFGLLPLIYGAMYYFP 124 (186)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666555555555554444
No 9
>PF04103 CD20: CD20-like family; InterPro: IPR007237 This family includes the CD20 protein and the beta subunit of the high affinity receptor for IgE Fc. The high affinity receptor for IgE is a tetrameric structure consisting of a single IgE-binding alpha subunit, a single beta subunit, and two disulphide-linked gamma subunits. The alpha subunit of Fc epsilon RI and most Fc receptors are homologous members of the Ig superfamily. By contrast, the beta and gamma subunits from Fc epsilon RI are not homologous to the Ig superfamily. Both molecules have four putative transmembrane segments and a probably topology where both amino- and carboxy termini protrude into the cytoplasm []. This family also includes LR8 like proteins from humans, mice and rats. The function of the human LR8 protein is unknown although it is known to be strongly expressed in the lung fibroblasts []. This family also includes sarcospan is a transmembrane component of dystrophin-associated glycoprotein. Loss of the sarcoglycan complex and sarcospan alone is sufficient to cause muscular dystrophy. The role of the sarcoglycan complex and sarcospan is thought to be to strengthen the dystrophin axis connecting the basement membrane with the cytoskeleton []. ; GO: 0016021 integral to membrane; PDB: 2OSL_Q 3BKY_P 3PP4_P.
Probab=81.25 E-value=0.53 Score=36.59 Aligned_cols=68 Identities=18% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhcccccccccccCccCCCchhhhHHHHhHHHHHHHHHHHhhhHHhhhhhhHHHHHHHHHHHHH
Q 027714 19 IMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVTFCLITCLGHIAAASANGFCLSFYMLITCLLL 98 (220)
Q Consensus 19 l~~l~Gl~li~~Giw~~~~~~~~~~~~~~~~~~~~~~~~i~~li~vG~il~~is~lGc~GA~~es~c~L~~Y~~ll~ll~ 98 (220)
+..++|+..+.+|+.+........ .... .-+-.|++.++.|.+|.....|.++|++..++.+-++-+
T Consensus 5 ~qI~lGi~~i~lGi~~~~~~~~~~-------~~~~------~piW~G~~fiisG~l~i~s~k~~~~~lv~~~l~lsi~s~ 71 (150)
T PF04103_consen 5 IQILLGILSIVLGIIALSLSSSVL-------VYIG------YPIWGGIFFIISGILGIASEKKPTKCLVIASLVLSIVSA 71 (150)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH-------HHhc------ccHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHH
Confidence 456778888888888665332200 0011 123448888999999999999999998887776555444
Q ss_pred H
Q 027714 99 L 99 (220)
Q Consensus 99 l 99 (220)
+
T Consensus 72 ~ 72 (150)
T PF04103_consen 72 L 72 (150)
T ss_dssp -
T ss_pred H
Confidence 3
No 10
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=81.02 E-value=27 Score=29.32 Aligned_cols=56 Identities=13% Similarity=0.084 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCccCCCchhhhHHHHhHHHHHHHHHHHhhhH
Q 027714 13 LKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVTFCLITCLGHIA 78 (220)
Q Consensus 13 L~~~N~l~~l~Gl~li~~Giw~~~~~~~~~~~~~~~~~~~~~~~~i~~li~vG~il~~is~lGc~G 78 (220)
+-++-.++.++|+.++.+|..-+....++....+ ..+ ..-.+|+.++++|.+++..
T Consensus 5 ~eiI~~vLLliG~~f~ligaIGLlRfPD~YtRLH----AAT------Ka~TLGv~LILlgv~l~~~ 60 (197)
T PRK12585 5 IEIIISIMILIGGLLSILAAIGVIRLPDVYTRTH----AAG------ISNTFGVSLLLFATVGYFF 60 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHhh----ccc------cchhhhHHHHHHHHHHHHH
Confidence 3455667778888888888876665544322111 111 2245566777777666554
No 11
>PF15345 TMEM51: Transmembrane protein 51
Probab=74.44 E-value=5.5 Score=34.30 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=15.1
Q ss_pred hHHHHhHHHHHHHHHHH
Q 027714 58 ICSFIGIGVTFCLITCL 74 (220)
Q Consensus 58 i~~li~vG~il~~is~l 74 (220)
.|+++++|+++++++++
T Consensus 61 AyVLVG~Gv~LLLLSIC 77 (233)
T PF15345_consen 61 AYVLVGSGVALLLLSIC 77 (233)
T ss_pred EEehhhHHHHHHHHHHH
Confidence 48999999999999983
No 12
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=72.64 E-value=11 Score=29.09 Aligned_cols=47 Identities=15% Similarity=0.195 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccccccccCccCCCchhhhHHHHhHHHHHHHHHH
Q 027714 15 ALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVTFCLITC 73 (220)
Q Consensus 15 ~~N~l~~l~Gl~li~~Giw~~~~~~~~~~~~~~~~~~~~~~~~i~~li~vG~il~~is~ 73 (220)
.+-+.++++|..++..|..+....-. . ..... +.++++|+++++=|+
T Consensus 45 ~la~~Lli~G~~li~~g~l~~~~~i~--~-------~~~~~---~~llilG~L~fIPG~ 91 (115)
T PF05915_consen 45 ALAVFLLIFGTVLIIIGLLLFFGHID--G-------DRDRG---WALLILGILCFIPGF 91 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccC--C-------CCccc---chHHHHHHHHHhccH
Confidence 44566778899999999888765311 0 01122 467888998887665
No 13
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=70.14 E-value=16 Score=34.36 Aligned_cols=39 Identities=13% Similarity=0.183 Sum_probs=28.9
Q ss_pred HhHHHHHHHHHHHhhhHHhhhhhhHHHHHHHHHHHHHHH
Q 027714 62 IGIGVTFCLITCLGHIAAASANGFCLSFYMLITCLLLLL 100 (220)
Q Consensus 62 i~vG~il~~is~lGc~GA~~es~c~L~~Y~~ll~ll~ll 100 (220)
+++=++.+++..++|+|..|.|||.+.+++++-++.+++
T Consensus 213 l~lL~~~lviC~~~l~gl~r~Sr~~li~~s~~g~l~l~~ 251 (418)
T cd07912 213 LGLLSLLLVICLVLLVGLARHSRCLLIVFSVCGLFALII 251 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 344446667777789999999999999987665555543
No 14
>PF10724 DUF2516: Protein of unknown function (DUF2516); InterPro: IPR019662 This entry represents a conserved protein in Actinobacteria. The function is not known.
Probab=68.88 E-value=29 Score=26.02 Aligned_cols=29 Identities=7% Similarity=0.244 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 027714 10 QSFLKALNLIMGIVGISMILYGIWMIRVW 38 (220)
Q Consensus 10 K~lL~~~N~l~~l~Gl~li~~Giw~~~~~ 38 (220)
..+..+.+.+++++.++.++.++|.+.+-
T Consensus 2 ~~l~~~~~~i~~~l~~~~~~~~v~Alv~a 30 (100)
T PF10724_consen 2 SFLFQIQGWILLALSLVALVLAVWALVDA 30 (100)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788899999999999999988764
No 15
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=68.29 E-value=36 Score=23.42 Aligned_cols=49 Identities=20% Similarity=0.373 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCccCCCchhhhHHHHhHHHHHHHHHHH
Q 027714 6 ITCLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVTFCLITCL 74 (220)
Q Consensus 6 ~~clK~lL~~~N~l~~l~Gl~li~~Giw~~~~~~~~~~~~~~~~~~~~~~~~i~~li~vG~il~~is~l 74 (220)
.+..|.+=..+..++++.|+..+.++.+.+... .-++++|+.+++.|++
T Consensus 4 K~~fk~iW~~~DIi~Fila~i~i~it~F~~n~~--------------------~g~i~i~I~l~l~G~i 52 (63)
T PF06341_consen 4 KKFFKTIWKYFDIILFILAMIFINITAFLINQI--------------------AGLISIGITLFLAGLI 52 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHH
Confidence 457888889999999999999999999864321 2467888888888775
No 16
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=66.99 E-value=12 Score=30.58 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 027714 13 LKALNLIMGIVGISMILYGIWMIR 36 (220)
Q Consensus 13 L~~~N~l~~l~Gl~li~~Giw~~~ 36 (220)
-.+.+.+..++|+++++.|+-.+.
T Consensus 4 ~~i~~i~~iilgilli~~gI~~Lv 27 (191)
T PF04156_consen 4 QRIISIILIILGILLIASGIAALV 27 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777777776544
No 17
>PF05640 NKAIN: Na,K-Atpase Interacting protein; InterPro: IPR008516 NKAIN (Na,K-Atpase INteracting) proteins are a family of evolutionary conserved transmembrane proteins that localise to neurons, that are critical for neuronal function, and that interact with the beta subunits, beta1 in vertebrates and beta in Drosophila, of Na,K-ATPase. NKAINs have highly conserved trans-membrane domains but otherwise no other characterised domains. NKAINs may function as subunits of pore or channel structures in neurons or they may affect the function of other membrane proteins. They are likely to function within the membrane bilayer [].
Probab=57.25 E-value=1.2e+02 Score=25.66 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=27.3
Q ss_pred HhHHHHHHHHHHHhhhHHhhhhhhHHHHHHHHHHHHHHHH
Q 027714 62 IGIGVTFCLITCLGHIAAASANGFCLSFYMLITCLLLLLE 101 (220)
Q Consensus 62 i~vG~il~~is~lGc~GA~~es~c~L~~Y~~ll~ll~llE 101 (220)
|.+=.+-.++-.+|..||..-++.-+.+|.+-..+=+..-
T Consensus 37 Il~NF~hIi~vIlGlFG~~QyR~ryi~~Y~vW~~~Wv~wN 76 (200)
T PF05640_consen 37 ILANFLHIIFVILGLFGAIQYRPRYIIVYAVWTALWVTWN 76 (200)
T ss_pred HHHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHh
Confidence 3334444445567888999999999999997666544433
No 18
>PF14995 TMEM107: Transmembrane protein
Probab=57.22 E-value=32 Score=26.72 Aligned_cols=63 Identities=14% Similarity=0.082 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhHhhccccc--ccCCCCCCCChHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHH
Q 027714 96 LLLLLETAIAADIQLNSEW--EKDLPDDPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSALLAMAL 161 (220)
Q Consensus 96 ll~llE~~~~~~~~~~~dW--~~~~P~~~~Gc~~~~~~~i~~~~~i~~~v~i~v~~~q~l~~ilA~~L 161 (220)
+.+++..++.+-++.++|- +..+|.+.+. +-++.-+..+..+-+++++..++|..|++.+.-+
T Consensus 7 l~l~~Hlvi~i~i~~~~~~nv~a~lp~~~~~---~~y~~~~~~l~v~L~~s~~~l~ie~~g~~sG~sm 71 (124)
T PF14995_consen 7 LTLIAHLVIVICIFWSREENVRACLPLDYTQ---AEYSTADTSLVVALSVSLLCLAIEFWGFFSGVSM 71 (124)
T ss_pred HHHHHHHHHHHHHHHhHHhhhHhhCCCCCcH---HHHHHhhhheehHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444455555556665543 3346643322 2366667788999999999999999999977543
No 19
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=55.11 E-value=10 Score=29.36 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Q 027714 141 KWIGIWIISAQVSSALLAMALRAL 164 (220)
Q Consensus 141 ~~v~i~v~~~q~l~~ilA~~L~~~ 164 (220)
+|+.++++++=++.+++.++.++.
T Consensus 1 RW~l~~iii~~i~l~~~~~~~~~r 24 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFYCHNR 24 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHH
Confidence 467777766666666666655433
No 20
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=52.99 E-value=4.5 Score=39.39 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=0.0
Q ss_pred chhhhHHHHhHHHHHHH
Q 027714 54 NPWFICSFIGIGVTFCL 70 (220)
Q Consensus 54 ~~~~i~~li~vG~il~~ 70 (220)
=||++|+.|+++.++++
T Consensus 546 WPWyVWL~i~~~li~~~ 562 (610)
T PF01601_consen 546 WPWYVWLAIILALIAFA 562 (610)
T ss_dssp -----------------
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 47888887777765543
No 21
>cd03158 penumbra_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), penumbra_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Human Penumbra exhibits growth-suppressive activity in vitro and has been associated with myeloid malignancies.
Probab=52.62 E-value=9.6 Score=28.61 Aligned_cols=17 Identities=12% Similarity=0.259 Sum_probs=15.1
Q ss_pred CCCChHHHHHHHHHhcc
Q 027714 121 DPTGRFHDFKKFVKSNF 137 (220)
Q Consensus 121 ~~~Gc~~~~~~~i~~~~ 137 (220)
+.+||++++.+|+++|+
T Consensus 103 ~~~GC~~~i~~~~~~n~ 119 (119)
T cd03158 103 YTRGCIDAVVLWIEDNL 119 (119)
T ss_pred cccchHHHHHHHHHhhC
Confidence 56799999999999985
No 22
>cd03166 CD63_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD63 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD63 is present in platelets, neutrophils, and endothelial cells, amongst others. In platelets it associates with the integrin alphaIIBbeta3 and may modulate alphaIIbbeta3-dependent cytoskeletal reorganization.
Probab=51.84 E-value=7.6 Score=27.97 Aligned_cols=17 Identities=18% Similarity=0.341 Sum_probs=14.7
Q ss_pred CCCChHHHHHHHHHhcc
Q 027714 121 DPTGRFHDFKKFVKSNF 137 (220)
Q Consensus 121 ~~~Gc~~~~~~~i~~~~ 137 (220)
+.+||++++.+|+++|+
T Consensus 83 y~~GC~~~~~~~~~~~~ 99 (99)
T cd03166 83 HLEGCVTKIEGWLKKNI 99 (99)
T ss_pred HHhcCHHHHHHHHHHhC
Confidence 45699999999999874
No 23
>cd03167 oculospanin_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), oculospanin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contains sequences similar to oculospanin, which is found to be expressed in retinal pigment epithelium, iris, ciliary body, and retinal ganglion cells.
Probab=51.21 E-value=9.6 Score=28.82 Aligned_cols=17 Identities=12% Similarity=0.317 Sum_probs=15.1
Q ss_pred CCCChHHHHHHHHHhcc
Q 027714 121 DPTGRFHDFKKFVKSNF 137 (220)
Q Consensus 121 ~~~Gc~~~~~~~i~~~~ 137 (220)
+.+||++++.+|+++|+
T Consensus 104 y~~GC~~~l~~~~~~n~ 120 (120)
T cd03167 104 HLGGCGPPLRRWLRGNL 120 (120)
T ss_pred hhccCHHHHHHHHHhcC
Confidence 46799999999999985
No 24
>cd03161 TM4SF2_6_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF2_6_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 2 (TM4SF2) or Tspan-7, transmembrane 4 superfamily 6 (TM4SF6) or Tspan-6, and related proteins. TM4SF2 has been identified as involved in some forms of X-linked mental retardation.
Probab=50.20 E-value=10 Score=27.39 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=14.9
Q ss_pred CCCChHHHHHHHHHhcc
Q 027714 121 DPTGRFHDFKKFVKSNF 137 (220)
Q Consensus 121 ~~~Gc~~~~~~~i~~~~ 137 (220)
+.+||++++.+|+++|+
T Consensus 88 ~~~GC~~~~~~~~~~n~ 104 (104)
T cd03161 88 YQQGCFTLVTSFMEANM 104 (104)
T ss_pred chhccHHHHHHHHHHhC
Confidence 46799999999999874
No 25
>cd03163 TM4SF8_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF8_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 8 (TM4SF8) or Tspan-3 and related proteins. Tspan-3 has been reported to form a complex with integrin beta1 and OSP/claudin-11, which may be involved in oligodendrocyte proliferation and migration.
Probab=50.11 E-value=8.8 Score=27.93 Aligned_cols=17 Identities=12% Similarity=0.006 Sum_probs=15.1
Q ss_pred CCCChHHHHHHHHHhcc
Q 027714 121 DPTGRFHDFKKFVKSNF 137 (220)
Q Consensus 121 ~~~Gc~~~~~~~i~~~~ 137 (220)
+.+||++++.+|+++|+
T Consensus 88 ~~~GC~~~~~~~~~~~~ 104 (105)
T cd03163 88 YQEGCEAKLVKKLQEVM 104 (105)
T ss_pred hhhccHHHHHHHHHHHh
Confidence 46799999999999986
No 26
>cd03154 TM4SF3_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF3_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 3 (TM4SF3) or D6.1a and related proteins. D6.1a associates with alpha6beta4 integrin and supports cell motility, it has been ascribed a role in tumor progression and metastasis.
Probab=49.94 E-value=12 Score=27.02 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=14.8
Q ss_pred CCCChHHHHHHHHHhcc
Q 027714 121 DPTGRFHDFKKFVKSNF 137 (220)
Q Consensus 121 ~~~Gc~~~~~~~i~~~~ 137 (220)
+.+||.+++.+|+++|+
T Consensus 84 ~~~GC~~~i~~~~~~~~ 100 (100)
T cd03154 84 YKEPCISKIKDFLKKNL 100 (100)
T ss_pred cccccHHHHHHHHHhhC
Confidence 45799999999999885
No 27
>cd03165 NET-5_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This sub-family contains proteins similar to human tetraspan NET-5.
Probab=47.14 E-value=10 Score=27.08 Aligned_cols=17 Identities=18% Similarity=0.397 Sum_probs=14.8
Q ss_pred CCCChHHHHHHHHHhcc
Q 027714 121 DPTGRFHDFKKFVKSNF 137 (220)
Q Consensus 121 ~~~Gc~~~~~~~i~~~~ 137 (220)
+.+||++++.+|+++|+
T Consensus 82 ~~~GC~~~~~~~~~~~~ 98 (98)
T cd03165 82 WKTGCYEKVQQWLVDNL 98 (98)
T ss_pred HHhhhHHHHHHHHHhcC
Confidence 46799999999999874
No 28
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=46.08 E-value=1.1e+02 Score=24.88 Aligned_cols=29 Identities=3% Similarity=-0.062 Sum_probs=21.3
Q ss_pred hhHHHHhHHHHHHHHHHHhhhHHhhhhhh
Q 027714 57 FICSFIGIGVTFCLITCLGHIAAASANGF 85 (220)
Q Consensus 57 ~i~~li~vG~il~~is~lGc~GA~~es~c 85 (220)
..+.++..++++++++++-.....+..+.
T Consensus 31 ~~~~~~~a~i~l~ilai~q~~~~~~~~~~ 59 (182)
T PF09323_consen 31 YIPLLYFAAILLLILAIVQLWRWFRPKRR 59 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34567777888888888887777766554
No 29
>cd03152 CD9_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD9 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD9 is found in virtually all tissues and is potentially involved in developmental processes. It associates with the tetraspanins CD81 and CD63, as well as with some integrin, and has been shown to be involved in a variety of activation, adhesion, and cell motility functions, as well as cell-cell interactions - such as
Probab=45.56 E-value=14 Score=25.97 Aligned_cols=17 Identities=6% Similarity=-0.019 Sum_probs=14.8
Q ss_pred CCCChHHHHHHHHHhcc
Q 027714 121 DPTGRFHDFKKFVKSNF 137 (220)
Q Consensus 121 ~~~Gc~~~~~~~i~~~~ 137 (220)
+.+||++++.+|+++|+
T Consensus 68 ~~~gC~~~i~~~~~~~~ 84 (84)
T cd03152 68 ITKSCPDAIDDVFNSKL 84 (84)
T ss_pred ccCCCcHHHHHHHHccC
Confidence 46699999999999885
No 30
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=45.25 E-value=1.3e+02 Score=23.20 Aligned_cols=29 Identities=14% Similarity=0.178 Sum_probs=19.3
Q ss_pred HHHhHHHHHHHHHHH-hhhHHhhhhhhHHH
Q 027714 60 SFIGIGVTFCLITCL-GHIAAASANGFCLS 88 (220)
Q Consensus 60 ~li~vG~il~~is~l-Gc~GA~~es~c~L~ 88 (220)
.++.+|+++.+++++ +.++..++++.+..
T Consensus 73 ~~~~l~~~~~~~a~~~~~~~~~~~~~~~~~ 102 (172)
T PF13903_consen 73 AFLILGLLLLLFAFVFALIGFCKRSYTLYL 102 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhH
Confidence 456667777777665 77777777764433
No 31
>cd03160 CD37_CD82_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD37_CD82_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD37 is a leukocyte-specific protein, and its restricted expression pattern suggests a role in the immune system. A regulatory role in T-cell proliferation has been suggested. CD82 is a metastasis suppressor implicated in biological processes ranging from fusion, adhesion, and migration to apoptos
Probab=44.93 E-value=9.8 Score=28.32 Aligned_cols=17 Identities=12% Similarity=0.386 Sum_probs=15.0
Q ss_pred CCCChHHHHHHHHHhcc
Q 027714 121 DPTGRFHDFKKFVKSNF 137 (220)
Q Consensus 121 ~~~Gc~~~~~~~i~~~~ 137 (220)
+.+||++++.+|+++|+
T Consensus 100 y~~GC~~~l~~~~~~n~ 116 (117)
T cd03160 100 YQEGCMEKLQSWLNENL 116 (117)
T ss_pred HHHhhHHHHHHHHHHhc
Confidence 45799999999999986
No 32
>cd03159 TM4SF9_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 9 (TM4SF9) or Tetraspanin-5 and related proteins. TM4SF9 is strongly expressed witin the central nervous system, and expression levels appear to correlate with differentiation status of particular neurons, hinting at a role in neuronal maturation.
Probab=44.68 E-value=12 Score=28.17 Aligned_cols=17 Identities=24% Similarity=0.600 Sum_probs=14.9
Q ss_pred CCCChHHHHHHHHHhcc
Q 027714 121 DPTGRFHDFKKFVKSNF 137 (220)
Q Consensus 121 ~~~Gc~~~~~~~i~~~~ 137 (220)
+.+||++++.+|+++|+
T Consensus 105 ~~~GC~~~l~~~~~~n~ 121 (121)
T cd03159 105 HTKGCVQAFEKWLQDNL 121 (121)
T ss_pred hHhhCHHHHHHHHHhcC
Confidence 46799999999999985
No 33
>cd03155 CD151_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD151_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD151strongly associates with integrins, especially alpha3beta1, alpha6beta1, alpha7beta1, and alpha6beta4; it may play roles in cell-cell adhesion, cell migration, platelet aggregation, and angiogenesis. For example, CD151 is is involved in regulation of migration of neutrophils, endothelial cells, and
Probab=44.21 E-value=16 Score=26.66 Aligned_cols=15 Identities=13% Similarity=0.397 Sum_probs=13.9
Q ss_pred CChHHHHHHHHHhcc
Q 027714 123 TGRFHDFKKFVKSNF 137 (220)
Q Consensus 123 ~Gc~~~~~~~i~~~~ 137 (220)
+||.+++.+|+++|+
T Consensus 96 ~GC~~~~~~~~~~~~ 110 (110)
T cd03155 96 GGCIPKLEDFLYDHL 110 (110)
T ss_pred CChHHHHHHHHHHhC
Confidence 899999999999875
No 34
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=42.11 E-value=32 Score=23.71 Aligned_cols=21 Identities=38% Similarity=0.881 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhc
Q 027714 17 NLIMGIVGISMILYGIWMIRV 37 (220)
Q Consensus 17 N~l~~l~Gl~li~~Giw~~~~ 37 (220)
..+++++|+.++++|+|...+
T Consensus 47 ~~ll~~vg~gli~~gi~~~~~ 67 (73)
T PF06724_consen 47 RWLLGAVGLGLIGYGIWQFVK 67 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999998654
No 35
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=41.62 E-value=37 Score=29.35 Aligned_cols=33 Identities=12% Similarity=0.310 Sum_probs=28.1
Q ss_pred CchhhhHHHHhHHHHHHHHHHHhhhHHhhhhhh
Q 027714 53 INPWFICSFIGIGVTFCLITCLGHIAAASANGF 85 (220)
Q Consensus 53 ~~~~~i~~li~vG~il~~is~lGc~GA~~es~c 85 (220)
..+|..|++|++|.++++-|+.+.+=+.|.-+-
T Consensus 192 ~~~wla~~Lm~~G~fI~irsi~dY~rVKR~Er~ 224 (233)
T PF10176_consen 192 SNPWLAYILMAFGWFIFIRSIIDYWRVKRMERL 224 (233)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346888999999999999999999988776553
No 36
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=41.36 E-value=69 Score=21.45 Aligned_cols=23 Identities=9% Similarity=0.002 Sum_probs=19.4
Q ss_pred HHHHhHHHHHHHHHHHhhhHHhh
Q 027714 59 CSFIGIGVTFCLITCLGHIAAAS 81 (220)
Q Consensus 59 ~~li~vG~il~~is~lGc~GA~~ 81 (220)
+++..+|+.++..++.|+|...+
T Consensus 34 ~~~~~~g~~ll~~g~~g~Cp~~~ 56 (66)
T PF11127_consen 34 WLLGFVGAMLLVTGITGFCPLYA 56 (66)
T ss_pred HHHHHHHHHHHHHHHHCcCHhHH
Confidence 46788999999999999998653
No 37
>PRK12587 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=39.63 E-value=1.8e+02 Score=22.47 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 027714 9 LQSFLKALNLIMGIVGISMILYGIWMIRVWQR 40 (220)
Q Consensus 9 lK~lL~~~N~l~~l~Gl~li~~Giw~~~~~~~ 40 (220)
+|-.+-.+-.++.+.|..+..+|..-+.+..+
T Consensus 2 ~~~~~~~l~~ill~~G~~~~ligaiGllR~PD 33 (118)
T PRK12587 2 IKIILISLALIFVIIGALISALAAIGLLRLED 33 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 45567778888899999999888887666544
No 38
>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function.
Probab=39.44 E-value=67 Score=22.51 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcc
Q 027714 16 LNLIMGIVGISMILYGIWMIRVW 38 (220)
Q Consensus 16 ~N~l~~l~Gl~li~~Giw~~~~~ 38 (220)
-|.++.++|++++..|-+++...
T Consensus 6 ~Nyill~iG~~vIilGfilMsg~ 28 (69)
T PF11297_consen 6 KNYILLAIGIAVIILGFILMSGG 28 (69)
T ss_pred HHHHHHHHHHHHHHHHHHheeCC
Confidence 49999999999999999987643
No 39
>PF15125 TMEM238: TMEM238 protein family
Probab=38.38 E-value=1e+02 Score=21.30 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccccccccCccCCCchhhhHHHHhHHHHHHHHHHHhhh
Q 027714 14 KALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVTFCLITCLGHI 77 (220)
Q Consensus 14 ~~~N~l~~l~Gl~li~~Giw~~~~~~~~~~~~~~~~~~~~~~~~i~~li~vG~il~~is~lGc~ 77 (220)
+.+-.++=++|+.++..|+..-..+. =.++=.|+++...|+++.+
T Consensus 7 f~laV~fD~vGl~~Ll~GiFa~l~f~-------------------D~lvY~GaliiflSL~~Wv 51 (65)
T PF15125_consen 7 FWLAVVFDVVGLVMLLTGIFAPLDFY-------------------DFLVYTGALIIFLSLLWWV 51 (65)
T ss_pred hHHHHHHHHhhHHHHHHHHhcchhHH-------------------HHHHHHhHHHHHHHHHHHH
Confidence 45677788899999999988533211 1456669999988888754
No 40
>cd03156 uroplakin_I_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Uroplakin Ia and Ib are components of the 16nm protein particles, which are packed hexagonally to form 2D crystals of asymmetric unit membranes, and cover the apical surface of mammalian urothelium, contributing to the urinay bladder's permeability barrier function. Uroplakins Ia and Ib are ma
Probab=38.07 E-value=20 Score=26.06 Aligned_cols=17 Identities=6% Similarity=0.229 Sum_probs=14.7
Q ss_pred CCCChHHHHHHHHHhcc
Q 027714 121 DPTGRFHDFKKFVKSNF 137 (220)
Q Consensus 121 ~~~Gc~~~~~~~i~~~~ 137 (220)
+.+||++++.+|+++|.
T Consensus 98 ~~~GC~~~l~~~~~~~~ 114 (114)
T cd03156 98 NKKGCYEKLSNPIERYA 114 (114)
T ss_pred hhcCchHHHHHHHHhcC
Confidence 46799999999999873
No 41
>PF10812 DUF2561: Protein of unknown function (DUF2561); InterPro: IPR024381 This family of proteins with unknown function appears to be found predominantly in Mycobacterium spp.
Probab=37.74 E-value=1.2e+02 Score=25.68 Aligned_cols=55 Identities=13% Similarity=0.201 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCccCCCchhhhHHHHhHHHHHHH
Q 027714 13 LKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVTFCL 70 (220)
Q Consensus 13 L~~~N~l~~l~Gl~li~~Giw~~~~~~~~~~~~~~~~~~~~~~~~i~~li~vG~il~~ 70 (220)
|.-..-..|+.-+.+-..++-.+.+..+-.+. +..+..++|.+|..|++.+.+++
T Consensus 24 LlG~CaaiWLa~lG~~VaA~VaL~Dlgrg~~~---~s~ss~T~WvLY~VI~VSaaVIa 78 (207)
T PF10812_consen 24 LLGACAAIWLAALGVSVAATVALVDLGRGFHE---SSGSSGTPWVLYAVIGVSAAVIA 78 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHhheeecccCCccC---cCCCCCCCEeehHHHHHHHHHHH
Confidence 33344455665555555555556665543221 12234578989988887776644
No 42
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=36.17 E-value=53 Score=28.76 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHhh
Q 027714 84 GFCLSFYMLITCLLLLLETAIAADIQ 109 (220)
Q Consensus 84 ~c~L~~Y~~ll~ll~llE~~~~~~~~ 109 (220)
+.||.+|..++++++++-++..+|+.
T Consensus 34 KrcLY~fvLlL~i~ivvNLalTiWIl 59 (292)
T KOG3950|consen 34 KRCLYTFVLLLMILIVVNLALTIWIL 59 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999999876
No 43
>cd03127 tetraspanin_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL). Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. The tetraspanin family contains CD9, CD63, CD37, CD53, CD82, CD151, and CD81, amongst others. Tetraspanins are involved in diverse processes such as cell activation and proliferation, adhesion and motility, differentiation, cancer, and others. Their various functions may relate to their ability to act as molecular facilitators, grouping specific cell-surface proteins and affecting formation and stability of signaling complexes. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web", which may also include integr
Probab=34.68 E-value=23 Score=24.36 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=14.4
Q ss_pred CCCChHHHHHHHHHhcc
Q 027714 121 DPTGRFHDFKKFVKSNF 137 (220)
Q Consensus 121 ~~~Gc~~~~~~~i~~~~ 137 (220)
+.+||.+++.+|++++.
T Consensus 74 ~~~GC~~~~~~~~~~~~ 90 (90)
T cd03127 74 YTEGCLEKLVDFLRSNL 90 (90)
T ss_pred hhHccHHHHHHHHHhhC
Confidence 36799999999999863
No 44
>PRK12586 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=34.18 E-value=2.4e+02 Score=22.54 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 027714 12 FLKALNLIMGIVGISMILYGIWMIRVWQR 40 (220)
Q Consensus 12 lL~~~N~l~~l~Gl~li~~Giw~~~~~~~ 40 (220)
++-++-.++.++|..++.+|..-+....+
T Consensus 7 ~~~il~~ill~lG~~f~ligaIGllRfPD 35 (145)
T PRK12586 7 IFSLIAAIMILLGSIIALISAIGIVKFQD 35 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 34556677788888888877776665443
No 45
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=33.89 E-value=25 Score=23.85 Aligned_cols=55 Identities=9% Similarity=0.138 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccccccccCccCCCchhhhHHHHhHHHHHHHHHHHh
Q 027714 17 NLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVTFCLITCLG 75 (220)
Q Consensus 17 N~l~~l~Gl~li~~Giw~~~~~~~~~~~~~~~~~~~~~~~~i~~li~vG~il~~is~lG 75 (220)
.+++.+.|++++.+|.-......+..... + ....+.. ...+++.|++..++++++
T Consensus 4 gi~Llv~GivLl~~G~~~~~S~~s~~s~~-~-TG~~t~~--t~~~ligG~va~ivGl~~ 58 (59)
T PF11381_consen 4 GIALLVGGIVLLYFGYQASDSLGSQVSRA-F-TGSPTDK--TIWYLIGGAVAVIVGLFL 58 (59)
T ss_pred eehHHHHHHHHHHhhhhhhhhHHHHHHHH-h-cCCCCch--hHHHHHhHHHHHHHHHhh
Confidence 34566777777766654332211111100 0 0111111 124567799988888764
No 46
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=32.11 E-value=61 Score=28.31 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=23.8
Q ss_pred hhhhHHHHhHHHHHHHHHHHhhhHHhhhhh
Q 027714 55 PWFICSFIGIGVTFCLITCLGHIAAASANG 84 (220)
Q Consensus 55 ~~~i~~li~vG~il~~is~lGc~GA~~es~ 84 (220)
+|--++++++|.++++.++++.+-.-|-.+
T Consensus 223 ~wLwwi~~vlG~ll~lr~~i~YikVrrm~~ 252 (262)
T KOG4812|consen 223 YWLWWIFLVLGLLLFLRGFINYIKVRRMEE 252 (262)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHhhHHH
Confidence 565578999999999999999876655443
No 47
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=31.89 E-value=2.2e+02 Score=22.93 Aligned_cols=22 Identities=14% Similarity=0.078 Sum_probs=13.0
Q ss_pred HHHhHHHHHHHHHHHhhhHHhh
Q 027714 60 SFIGIGVTFCLITCLGHIAAAS 81 (220)
Q Consensus 60 ~li~vG~il~~is~lGc~GA~~ 81 (220)
+.+++|+++++.|..++.-...
T Consensus 10 ~~iilgilli~~gI~~Lv~~~~ 31 (191)
T PF04156_consen 10 ILIILGILLIASGIAALVLFIS 31 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677766666666444433
No 48
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=31.45 E-value=47 Score=25.58 Aligned_cols=7 Identities=57% Similarity=1.360 Sum_probs=3.2
Q ss_pred cCCCCcc
Q 027714 172 YDNDGEF 178 (220)
Q Consensus 172 ~d~~d~~ 178 (220)
||.+.+|
T Consensus 78 Yd~~g~~ 84 (130)
T PF12273_consen 78 YDQQGNF 84 (130)
T ss_pred CCCCCCC
Confidence 4444444
No 49
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=31.37 E-value=82 Score=18.91 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=19.8
Q ss_pred HHHHhHHHHHHHHHHHhhhHHhhh
Q 027714 59 CSFIGIGVTFCLITCLGHIAAASA 82 (220)
Q Consensus 59 ~~li~vG~il~~is~lGc~GA~~e 82 (220)
|+-+++|.+++++++-|.....++
T Consensus 10 W~Gl~~g~~l~~~~~tG~~~~f~~ 33 (37)
T PF13706_consen 10 WLGLILGLLLFVIFLTGAVMVFRD 33 (37)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 577889999999999998876643
No 50
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=30.17 E-value=1.3e+02 Score=29.94 Aligned_cols=63 Identities=19% Similarity=0.419 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCccCCCchhhhHHHHhHHHHHHHHHHHhhhHHhhhhhhHHHHHHH
Q 027714 13 LKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVTFCLITCLGHIAAASANGFCLSFYML 92 (220)
Q Consensus 13 L~~~N~l~~l~Gl~li~~Giw~~~~~~~~~~~~~~~~~~~~~~~~i~~li~vG~il~~is~lGc~GA~~es~c~L~~Y~~ 92 (220)
+.+..+++.++|+++.+-|+|+..- .-.| |. +..|..+++.+++= .++++--|..|..
T Consensus 3 ~~~~~~~~~~~gl~l~~gg~~l~~l---------------ggs~--yy-~iagl~~l~~~~ll----~~~k~aal~lya~ 60 (773)
T COG4993 3 VTLTALVIALCGLALLIGGIWLVAL---------------GGSW--YY-LIAGLVLLLSAWLL----LRRKRAALWLYAL 60 (773)
T ss_pred hhHHHHHHHHHHHHHhccceeEEee---------------CCch--HH-HHHHHHHHHHHHHH----hccchhHHHHHHH
Confidence 3456678889999999888885321 1112 22 44577777777663 4778888998886
Q ss_pred HHHHH
Q 027714 93 ITCLL 97 (220)
Q Consensus 93 ll~ll 97 (220)
+++.-
T Consensus 61 ~~~~t 65 (773)
T COG4993 61 VLLGT 65 (773)
T ss_pred HHHHH
Confidence 65443
No 51
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=29.57 E-value=93 Score=21.26 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhhcc---CCCCccCCCCc
Q 027714 152 VSSALLAMALRALGS---NQGYSYDNDGE 177 (220)
Q Consensus 152 ~l~~ilA~~L~~~~~---~~~~~~d~~d~ 177 (220)
++++.|.-+.++.-. .....||+||+
T Consensus 10 lLC~aLva~vQ~APQYa~GeeP~YDEdd~ 38 (65)
T PF10731_consen 10 LLCVALVAIVQSAPQYAPGEEPSYDEDDD 38 (65)
T ss_pred HHHHHHHHHHhcCcccCCCCCCCcCcccC
Confidence 344444444444421 23334887773
No 52
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=28.43 E-value=46 Score=33.75 Aligned_cols=26 Identities=12% Similarity=-0.114 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhc
Q 027714 85 FCLSFYMLITCLLLLLETAIAADIQL 110 (220)
Q Consensus 85 c~L~~Y~~ll~ll~llE~~~~~~~~~ 110 (220)
|-=.+|.++++++.+.-++..+.+|.
T Consensus 137 c~R~~l~~~L~~~~~~il~g~i~aF~ 162 (806)
T PF05478_consen 137 CRRGCLGILLLLLTLIILFGVICAFV 162 (806)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43445555555555554444444554
No 53
>COG4298 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.19 E-value=1.9e+02 Score=21.15 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 027714 15 ALNLIMGIVGISMILYGIWM 34 (220)
Q Consensus 15 ~~N~l~~l~Gl~li~~Giw~ 34 (220)
.||-.-+-++..|+++|+|.
T Consensus 18 ~f~waafg~s~~m~~~gi~~ 37 (95)
T COG4298 18 MFNWAAFGASYFMLGLGIWL 37 (95)
T ss_pred hHHHHHHHHHHHHHHHHhhe
Confidence 45666666777788888884
No 54
>PRK11901 hypothetical protein; Reviewed
Probab=27.76 E-value=55 Score=29.71 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=19.2
Q ss_pred HHHHhHHHHHHHHHHHhhhHHhhh
Q 027714 59 CSFIGIGVTFCLITCLGHIAAASA 82 (220)
Q Consensus 59 ~~li~vG~il~~is~lGc~GA~~e 82 (220)
+++|++|++++++-++|.-.|.|.
T Consensus 37 h~MiGiGilVLlLLIi~IgSALks 60 (327)
T PRK11901 37 HMMIGIGILVLLLLIIAIGSALKS 60 (327)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccC
Confidence 689999999888887777666653
No 55
>KOG3658 consensus Tumor necrosis factor-alpha-converting enzyme (TACE/ADAM17) and related metalloproteases [Extracellular structures]
Probab=27.40 E-value=88 Score=31.28 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=15.0
Q ss_pred HHHHHHHHhccchhhhHHHHHHHHH
Q 027714 127 HDFKKFVKSNFDIFKWIGIWIISAQ 151 (220)
Q Consensus 127 ~~~~~~i~~~~~i~~~v~i~v~~~q 151 (220)
+.+.+|++.||.....++++++++-
T Consensus 673 ~~~~~w~~~~w~~v~i~gi~~i~~m 697 (764)
T KOG3658|consen 673 ETFAEWIVLNWLAVNIVGIVLIVLM 697 (764)
T ss_pred hhhHHHHHhhhHHhHhHHHHHHHHH
Confidence 4455666777766666666554433
No 56
>PRK07946 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=26.77 E-value=89 Score=25.58 Aligned_cols=22 Identities=14% Similarity=0.107 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 027714 16 LNLIMGIVGISMILYGIWMIRV 37 (220)
Q Consensus 16 ~N~l~~l~Gl~li~~Giw~~~~ 37 (220)
.|++..++..++++.|+|++.+
T Consensus 3 ~~l~~~i~~gvL~~~G~Ylll~ 24 (163)
T PRK07946 3 ANLGLLVAIGVLTSAGVYLLLE 24 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4667777888889999998874
No 57
>PF10177 DUF2371: Uncharacterised conserved protein (DUF2371); InterPro: IPR018787 This family of proteins with no known function is conserved from nematodes to humans. It includes members of the TMEM200 family of transmembrane proteins.
Probab=26.30 E-value=44 Score=26.66 Aligned_cols=24 Identities=29% Similarity=0.649 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 027714 12 FLKALNLIMGIVGISMILYGIWMI 35 (220)
Q Consensus 12 lL~~~N~l~~l~Gl~li~~Giw~~ 35 (220)
+..++-++..++|++|-.+|-|-.
T Consensus 41 ~~l~lG~lvllvGiaMAv~GYwp~ 64 (141)
T PF10177_consen 41 LFLLLGILVLLVGIAMAVLGYWPK 64 (141)
T ss_pred HHHHHHHHHHHHhhHhheeecccc
Confidence 445556677777887777777765
No 58
>PRK02935 hypothetical protein; Provisional
Probab=25.83 E-value=3e+02 Score=20.95 Aligned_cols=38 Identities=16% Similarity=0.259 Sum_probs=26.3
Q ss_pred HHHHhHHHHHHHHHHHhhhHHhhhhhhHHHHHHHHHHHHHHHH
Q 027714 59 CSFIGIGVTFCLITCLGHIAAASANGFCLSFYMLITCLLLLLE 101 (220)
Q Consensus 59 ~~li~vG~il~~is~lGc~GA~~es~c~L~~Y~~ll~ll~llE 101 (220)
-.++-+|.+++.+|++= +++.....+|+++-++.++.-
T Consensus 17 L~lvfiG~~vMy~Giff-----~~~~~~m~ifm~~G~l~~l~S 54 (110)
T PRK02935 17 LSLVFIGFIVMYLGIFF-----RESIIIMTIFMLLGFLAVIAS 54 (110)
T ss_pred HHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHHHHHHHHH
Confidence 35677888888888542 788887777777666655543
No 59
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=24.42 E-value=1.1e+02 Score=25.55 Aligned_cols=27 Identities=11% Similarity=0.391 Sum_probs=17.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhh
Q 027714 138 DIFKWIGIWIISAQVSSALLAMALRAL 164 (220)
Q Consensus 138 ~i~~~v~i~v~~~q~l~~ilA~~L~~~ 164 (220)
++.+|++++++.+-.++.+.+.+=.+.
T Consensus 32 k~l~~~~i~~~a~i~i~~v~~~~~~~~ 58 (181)
T PRK06654 32 KILQWVAIGLFAVIFIVTVVYFVSKMV 58 (181)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 356888888877766666654443333
No 60
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=24.09 E-value=77 Score=24.42 Aligned_cols=17 Identities=24% Similarity=0.718 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHhh
Q 027714 18 LIMGIVGISMILYGIWM 34 (220)
Q Consensus 18 ~l~~l~Gl~li~~Giw~ 34 (220)
++||=+|+++++|.+|-
T Consensus 20 i~fWPlGla~Lay~iw~ 36 (115)
T PF11014_consen 20 IVFWPLGLALLAYMIWG 36 (115)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35889999999999996
No 61
>PF11359 gpUL132: Glycoprotein UL132; InterPro: IPR021023 Glycoprotein UL132 is a low-abundance structural component of Human herpesvirus 5 []. The function of this protein is not fully understood.
Probab=24.02 E-value=2.1e+02 Score=24.60 Aligned_cols=27 Identities=7% Similarity=-0.062 Sum_probs=16.1
Q ss_pred hccchhhhHHHHHHHHHHHHHHHHHHH
Q 027714 135 SNFDIFKWIGIWIISAQVSSALLAMAL 161 (220)
Q Consensus 135 ~~~~i~~~v~i~v~~~q~l~~ilA~~L 161 (220)
+-+.++.-+..++.+++++....+-.+
T Consensus 49 kvL~IliYcVTg~sllsli~VtvaalY 75 (235)
T PF11359_consen 49 KVLAILIYCVTGFSLLSLIVVTVAALY 75 (235)
T ss_pred HHHhhheeeehhHHHHHHHHHHHHHHH
Confidence 334445555666777787766665544
No 62
>PF08611 DUF1774: Fungal protein of unknown function (DUF1774); InterPro: IPR013920 This is a fungal protein of unknown function.
Probab=23.96 E-value=2.1e+02 Score=21.36 Aligned_cols=8 Identities=50% Similarity=1.007 Sum_probs=6.5
Q ss_pred cccccccc
Q 027714 180 SDRLPLIN 187 (220)
Q Consensus 180 ~~r~pl~~ 187 (220)
.+|.||||
T Consensus 90 ~EraPLLn 97 (97)
T PF08611_consen 90 RERAPLLN 97 (97)
T ss_pred cccccccC
Confidence 46999997
No 63
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=23.62 E-value=4.5e+02 Score=22.71 Aligned_cols=21 Identities=10% Similarity=0.134 Sum_probs=13.4
Q ss_pred HHHhHHHHHHHHHHHhhhHHh
Q 027714 60 SFIGIGVTFCLITCLGHIAAA 80 (220)
Q Consensus 60 ~li~vG~il~~is~lGc~GA~ 80 (220)
+.++++++.|+.+++|-.|.-
T Consensus 26 ~~~~~~~~~F~~~ml~~~G~r 46 (284)
T PF12805_consen 26 LILVLALLTFFFGMLGVYGPR 46 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhhH
Confidence 445566666777777777653
No 64
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=23.40 E-value=4e+02 Score=21.50 Aligned_cols=20 Identities=10% Similarity=0.077 Sum_probs=9.1
Q ss_pred HHHHhccc--hhhhHHHHHHHH
Q 027714 131 KFVKSNFD--IFKWIGIWIISA 150 (220)
Q Consensus 131 ~~i~~~~~--i~~~v~i~v~~~ 150 (220)
+++++-+. .+.++..+++++
T Consensus 52 ~yi~~~lsgtAIaGIVfgiVfi 73 (155)
T PF10873_consen 52 AYIGDVLSGTAIAGIVFGIVFI 73 (155)
T ss_pred hhhccccccceeeeeehhhHHH
Confidence 56665554 233333344333
No 65
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=20.99 E-value=1e+02 Score=25.90 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=16.4
Q ss_pred hhHHHHhHHHHHHHHHHHhhh
Q 027714 57 FICSFIGIGVTFCLITCLGHI 77 (220)
Q Consensus 57 ~i~~li~vG~il~~is~lGc~ 77 (220)
.+.+++.+|++++++|.+|..
T Consensus 8 I~~vLLliG~~f~ligaIGLl 28 (197)
T PRK12585 8 IISIMILIGGLLSILAAIGVI 28 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346788889999998888753
No 66
>PHA03283 envelope glycoprotein E; Provisional
Probab=20.94 E-value=1.9e+02 Score=28.05 Aligned_cols=8 Identities=38% Similarity=0.488 Sum_probs=4.6
Q ss_pred cCCCCccc
Q 027714 172 YDNDGEFL 179 (220)
Q Consensus 172 ~d~~d~~~ 179 (220)
+||||+|.
T Consensus 461 ~~~ddsf~ 468 (542)
T PHA03283 461 SDSDDSFD 468 (542)
T ss_pred cCcccccc
Confidence 45666664
No 67
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=20.57 E-value=6.7e+02 Score=23.44 Aligned_cols=14 Identities=29% Similarity=0.589 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHH
Q 027714 18 LIMGIVGISMILYG 31 (220)
Q Consensus 18 ~l~~l~Gl~li~~G 31 (220)
-+++.+|..++.+|
T Consensus 275 klLg~vGgi~LliG 288 (389)
T PRK15033 275 VLLGTLGGIGLLIG 288 (389)
T ss_pred HHHHHHHHHHHHHH
Confidence 35666777777776
No 68
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=20.22 E-value=1.6e+02 Score=19.92 Aligned_cols=30 Identities=13% Similarity=0.076 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCccCCCCc
Q 027714 148 ISAQVSSALLAMALRALGSNQGYSYDNDGE 177 (220)
Q Consensus 148 ~~~q~l~~ilA~~L~~~~~~~~~~~d~~d~ 177 (220)
.++-++++.|+.+.|++..+....+.++++
T Consensus 14 ~l~vl~~~~Ftl~IRri~~~s~~kkq~~~~ 43 (58)
T PF13314_consen 14 ILIVLFGASFTLFIRRILINSNAKKQDVDS 43 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccchhH
Confidence 334456777887888887665555544443
Done!