Query 027714
Match_columns 220
No_of_seqs 179 out of 1037
Neff 6.9
Searched_HMMs 29240
Date Tue Mar 26 00:08:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027714.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027714hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3uky_C Nuclear CAP-binding pro 66.8 3.2 0.00011 23.4 1.8 14 166-179 6-19 (32)
2 3ukx_C Bimax2 peptide; arm rep 54.5 8.1 0.00028 20.8 1.9 16 168-183 10-25 (28)
3 1g8q_A CD81 antigen, extracell 48.2 9.3 0.00032 25.9 2.1 16 121-136 74-89 (90)
4 3ukw_C Bimax1 peptide; arm rep 20.6 45 0.0015 17.8 1.3 11 168-178 10-20 (28)
5 1xrd_A LH-1, light-harvesting 13.7 1.1E+02 0.0037 19.4 2.1 17 60-76 13-29 (52)
6 3rko_J NADH-quinone oxidoreduc 12.0 4.9E+02 0.017 20.3 6.1 18 18-35 3-20 (184)
7 1rh5_B Preprotein translocase 10.4 2.3E+02 0.0079 19.0 3.1 19 59-77 36-54 (74)
8 2k9p_A Pheromone alpha factor 9.4 4.1E+02 0.014 18.0 4.1 25 125-149 7-31 (80)
9 2ezd_A High mobility group pro 9.3 2.6E+02 0.0091 14.8 2.4 13 199-211 9-21 (26)
10 2ww9_B Protein transport prote 8.5 3E+02 0.01 18.8 3.1 19 59-77 49-67 (80)
No 1
>3uky_C Nuclear CAP-binding protein complex subunit 1; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding; 2.35A {Saccharomyces cerevisiae}
Probab=66.80 E-value=3.2 Score=23.39 Aligned_cols=14 Identities=14% Similarity=0.382 Sum_probs=10.6
Q ss_pred cCCCCccCCCCccc
Q 027714 166 SNQGYSYDNDGEFL 179 (220)
Q Consensus 166 ~~~~~~~d~~d~~~ 179 (220)
+.++.|||+||.|-
T Consensus 6 ~KRr~dfd~ddgYr 19 (32)
T 3uky_C 6 RKRRGDFDEDENYR 19 (32)
T ss_pred ccccccCccccccc
Confidence 35777899999773
No 2
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=54.47 E-value=8.1 Score=20.79 Aligned_cols=16 Identities=19% Similarity=0.300 Sum_probs=9.8
Q ss_pred CCCccCCCCccccccc
Q 027714 168 QGYSYDNDGEFLSDRL 183 (220)
Q Consensus 168 ~~~~~d~~d~~~~~r~ 183 (220)
+..+||+|||-...|+
T Consensus 10 rkrewdddddppkkrr 25 (28)
T 3ukx_C 10 RKREWDDDDDPPKKRR 25 (28)
T ss_dssp CCCCCCCSSSCCSCCC
T ss_pred hhcccccCCCchhhhh
Confidence 4456888888543343
No 3
>1g8q_A CD81 antigen, extracellular domain; alpha helical, immune system; 1.60A {Homo sapiens} SCOP: a.135.1.1 PDB: 1iv5_A
Probab=48.17 E-value=9.3 Score=25.85 Aligned_cols=16 Identities=0% Similarity=-0.004 Sum_probs=14.2
Q ss_pred CCCChHHHHHHHHHhc
Q 027714 121 DPTGRFHDFKKFVKSN 136 (220)
Q Consensus 121 ~~~Gc~~~~~~~i~~~ 136 (220)
+.+||.+++.+|+++|
T Consensus 74 ~~~GC~~~i~~~~~~n 89 (90)
T 1g8q_A 74 FKEDCHQKIDDLFSGK 89 (90)
T ss_dssp TSCCHHHHHHHHHHTC
T ss_pred ccCCcHHHHHHHHHhC
Confidence 4679999999999986
No 4
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=20.59 E-value=45 Score=17.83 Aligned_cols=11 Identities=27% Similarity=0.410 Sum_probs=7.5
Q ss_pred CCCccCCCCcc
Q 027714 168 QGYSYDNDGEF 178 (220)
Q Consensus 168 ~~~~~d~~d~~ 178 (220)
++-+||+|+|-
T Consensus 10 rplewdedeep 20 (28)
T 3ukw_C 10 RPLEWDEDEEP 20 (28)
T ss_dssp CCCCCCGGGSC
T ss_pred CCcccccccCc
Confidence 55568888774
No 5
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=13.68 E-value=1.1e+02 Score=19.35 Aligned_cols=17 Identities=18% Similarity=0.477 Sum_probs=11.2
Q ss_pred HHHhHHHHHHHHHHHhh
Q 027714 60 SFIGIGVTFCLITCLGH 76 (220)
Q Consensus 60 ~li~vG~il~~is~lGc 76 (220)
.+++.++++++++++=+
T Consensus 13 ~Lva~~~fl~vlAl~IH 29 (52)
T 1xrd_A 13 ALVGLATFLFVLALLIH 29 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46777777777766533
No 6
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=12.04 E-value=4.9e+02 Score=20.35 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 027714 18 LIMGIVGISMILYGIWMI 35 (220)
Q Consensus 18 ~l~~l~Gl~li~~Giw~~ 35 (220)
++|++.+...+.-++-+.
T Consensus 3 i~F~~~a~~~i~~al~vv 20 (184)
T 3rko_J 3 FAFYICGLIAILATLRVI 20 (184)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHHHH
Confidence 345555555555444443
No 7
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=10.36 E-value=2.3e+02 Score=19.00 Aligned_cols=19 Identities=16% Similarity=0.165 Sum_probs=14.2
Q ss_pred HHHHhHHHHHHHHHHHhhh
Q 027714 59 CSFIGIGVTFCLITCLGHI 77 (220)
Q Consensus 59 ~~li~vG~il~~is~lGc~ 77 (220)
-+..++|+-++++|++|+.
T Consensus 36 ~iak~~~iG~~imG~IGfi 54 (74)
T 1rh5_B 36 AVAKVTALGISLLGIIGYI 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3567777778888988864
No 8
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=9.44 E-value=4.1e+02 Score=17.97 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=18.4
Q ss_pred hHHHHHHHHHhccchhhhHHHHHHH
Q 027714 125 RFHDFKKFVKSNFDIFKWIGIWIIS 149 (220)
Q Consensus 125 c~~~~~~~i~~~~~i~~~v~i~v~~ 149 (220)
-++++.+|.+++.+.+..-|.-+.+
T Consensus 7 ~f~~ld~~~~~~~~~~I~~G~~iGA 31 (80)
T 2k9p_A 7 TFDELQGLVNSTVTQAILFGVRSGA 31 (80)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999976655554444
No 9
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=9.25 E-value=2.6e+02 Score=14.85 Aligned_cols=13 Identities=15% Similarity=0.128 Sum_probs=9.6
Q ss_pred CCCCCCCCCCCcc
Q 027714 199 DPPFAAKYDPVKP 211 (220)
Q Consensus 199 ~~~~~~~~d~ws~ 211 (220)
.-..+++|-.||.
T Consensus 9 gRpkGSKNk~~~k 21 (26)
T 2ezd_A 9 GRPKGSKNKGAAK 21 (26)
T ss_dssp SCCTTCCCCSCCC
T ss_pred CCcCcccccCccc
Confidence 3457888888886
No 10
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=8.51 E-value=3e+02 Score=18.79 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=14.8
Q ss_pred HHHHhHHHHHHHHHHHhhh
Q 027714 59 CSFIGIGVTFCLITCLGHI 77 (220)
Q Consensus 59 ~~li~vG~il~~is~lGc~ 77 (220)
-+..++|+-++++|++|+.
T Consensus 49 ~iak~t~iG~~imG~IGfi 67 (80)
T 2ww9_B 49 KIVKAVGIGFIAVGIIGYA 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3567778888889999875
Done!