Query 027714
Match_columns 220
No_of_seqs 179 out of 1037
Neff 6.9
Searched_HMMs 13730
Date Tue Mar 26 00:08:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027714.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027714hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xrda1 f.3.1.1 (A:1-52) Light 20.8 27 0.002 20.6 2.1 17 60-76 13-29 (52)
2 d1y29a_ g.3.6.2 (A:) Huwentoxi 7.0 20 0.0014 17.9 -1.5 10 76-85 18-27 (28)
3 d1v54m_ f.23.7.1 (M:) Mitochon 6.7 1.8E+02 0.013 16.1 2.5 18 61-78 14-31 (43)
4 d1rh5b_ f.23.28.1 (B:) Preprot 5.7 2.8E+02 0.021 16.0 3.3 26 135-160 22-47 (56)
5 d2e74h1 f.23.27.1 (H:3-29) Pet 5.0 2.2E+02 0.016 13.7 2.5 17 139-155 3-19 (27)
6 d1wj2a_ g.79.1.1 (A:) WRKY DNA 4.7 1.9E+02 0.014 17.7 2.0 14 203-216 8-21 (71)
7 d1y7ma2 d.7.1.1 (A:1-48) Hypot 4.7 62 0.0045 18.0 -0.4 14 206-219 10-24 (48)
8 d3cx5c1 f.32.1.1 (C:262-385) M 4.4 4.9E+02 0.036 17.0 6.4 37 61-97 65-105 (124)
9 d3boea1 c.154.1.1 (A:224-432) 3.8 50 0.0036 24.4 -1.8 13 206-218 172-184 (209)
10 d1cixa_ g.3.6.2 (A:) Tachystat 3.5 1.5E+02 0.011 15.9 0.6 7 212-218 14-20 (44)
No 1
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=20.84 E-value=27 Score=20.59 Aligned_cols=17 Identities=18% Similarity=0.477 Sum_probs=12.5
Q ss_pred HHHhHHHHHHHHHHHhh
Q 027714 60 SFIGIGVTFCLITCLGH 76 (220)
Q Consensus 60 ~li~vG~il~~is~lGc 76 (220)
++++.|+++++++++=+
T Consensus 13 ~lva~~~fL~~LAl~IH 29 (52)
T d1xrda1 13 ALVGLATFLFVLALLIH 29 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57788888888877544
No 2
>d1y29a_ g.3.6.2 (A:) Huwentoxin-X {Spider (Selenocosmia hainana) [TaxId: 209901]}
Probab=7.01 E-value=20 Score=17.95 Aligned_cols=10 Identities=20% Similarity=0.069 Sum_probs=6.1
Q ss_pred hhHHhhhhhh
Q 027714 76 HIAAASANGF 85 (220)
Q Consensus 76 c~GA~~es~c 85 (220)
|||.+..|+|
T Consensus 18 ccgvcshnkc 27 (28)
T d1y29a_ 18 CCGVCSHNKC 27 (28)
T ss_dssp BSSCBSSSCB
T ss_pred ceeeeccccc
Confidence 5666666655
No 3
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.68 E-value=1.8e+02 Score=16.13 Aligned_cols=18 Identities=17% Similarity=0.222 Sum_probs=14.0
Q ss_pred HHhHHHHHHHHHHHhhhH
Q 027714 61 FIGIGVTFCLITCLGHIA 78 (220)
Q Consensus 61 li~vG~il~~is~lGc~G 78 (220)
=.++|...|+++|+|=-|
T Consensus 14 E~aigLt~~f~~~L~PaG 31 (43)
T d1v54m_ 14 EQAIGLSVTFLSFLLPAG 31 (43)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHH
Confidence 367888889999987655
No 4
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=5.71 E-value=2.8e+02 Score=16.05 Aligned_cols=26 Identities=8% Similarity=0.063 Sum_probs=18.5
Q ss_pred hccchhhhHHHHHHHHHHHHHHHHHH
Q 027714 135 SNFDIFKWIGIWIISAQVSSALLAMA 160 (220)
Q Consensus 135 ~~~~i~~~v~i~v~~~q~l~~ilA~~ 160 (220)
|...+....++|++++=.+|++.-.+
T Consensus 22 Ef~~ia~v~~iG~~i~G~IGf~I~li 47 (56)
T d1rh5b_ 22 EYLAVAKVTALGISLLGIIGYIIHVP 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888888888775543
No 5
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.00 E-value=2.2e+02 Score=13.73 Aligned_cols=17 Identities=6% Similarity=0.448 Sum_probs=10.9
Q ss_pred hhhhHHHHHHHHHHHHH
Q 027714 139 IFKWIGIWIISAQVSSA 155 (220)
Q Consensus 139 i~~~v~i~v~~~q~l~~ 155 (220)
..+|+++.+++.=-+.|
T Consensus 3 ~lgwv~llvvftwsiam 19 (27)
T d2e74h1 3 VLGWVALLVVFTWSIAM 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred chhHhHHHHHhhheeee
Confidence 46788887766554443
No 6
>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=4.71 E-value=1.9e+02 Score=17.65 Aligned_cols=14 Identities=14% Similarity=-0.038 Sum_probs=11.1
Q ss_pred CCCCCCCccccccc
Q 027714 203 AAKYDPVKPTAYAW 216 (220)
Q Consensus 203 ~~~~d~ws~~~y~~ 216 (220)
..-+|.|.=||||=
T Consensus 8 ~~~dDGy~WRKYGQ 21 (71)
T d1wj2a_ 8 DLLDDGYRWRKYGQ 21 (71)
T ss_dssp CCCCSSSCBCCCEE
T ss_pred ccCCCCcEecccCc
Confidence 34588899999993
No 7
>d1y7ma2 d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=4.70 E-value=62 Score=18.02 Aligned_cols=14 Identities=7% Similarity=-0.085 Sum_probs=8.8
Q ss_pred CCCCcc-cccccCCC
Q 027714 206 YDPVKP-TAYAWNTN 219 (220)
Q Consensus 206 ~d~ws~-~~y~~~~~ 219 (220)
+.-|+. +|||.+.+
T Consensus 10 DTL~~IA~~y~v~~~ 24 (48)
T d1y7ma2 10 DTLNSIAADFRISTA 24 (48)
T ss_dssp CCHHHHHHHTTSCCC
T ss_pred CCHHHHHHHhCCCHH
Confidence 344555 88887664
No 8
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.42 E-value=4.9e+02 Score=17.01 Aligned_cols=37 Identities=14% Similarity=0.222 Sum_probs=23.0
Q ss_pred HHhHHHHHHHHHHHhhhHHhh----hhhhHHHHHHHHHHHH
Q 027714 61 FIGIGVTFCLITCLGHIAAAS----ANGFCLSFYMLITCLL 97 (220)
Q Consensus 61 li~vG~il~~is~lGc~GA~~----es~c~L~~Y~~ll~ll 97 (220)
+....+..++++.+|.+.++- -++.+...|+...+++
T Consensus 65 fw~fv~~fi~LtwlG~~p~e~p~~~~gqi~s~~YF~~Fli~ 105 (124)
T d3cx5c1 65 FFIFVFNFVLLGQIGACHVEVPYVLMGQIATFIYFAYFLII 105 (124)
T ss_dssp HHHHHHHHHHHHHHHTSCSCTTHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 344455566778888877654 4566666666665444
No 9
>d3boea1 c.154.1.1 (A:224-432) Cadmium-specific carbonic anhydrase CdCA1 {Thalassiosira weissflogii [TaxId: 67004]}
Probab=3.76 E-value=50 Score=24.40 Aligned_cols=13 Identities=8% Similarity=0.156 Sum_probs=11.3
Q ss_pred CCCCcccccccCC
Q 027714 206 YDPVKPTAYAWNT 218 (220)
Q Consensus 206 ~d~ws~~~y~~~~ 218 (220)
-|+|.+.|++||-
T Consensus 172 VD~Waa~KF~lDv 184 (209)
T d3boea1 172 VDGWAADKFGLDV 184 (209)
T ss_dssp EEHHHHHHTTCCH
T ss_pred eeeeeccccCCch
Confidence 4899999999984
No 10
>d1cixa_ g.3.6.2 (A:) Tachystatin {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}
Probab=3.52 E-value=1.5e+02 Score=15.91 Aligned_cols=7 Identities=29% Similarity=0.482 Sum_probs=0.0
Q ss_pred cccccCC
Q 027714 212 TAYAWNT 218 (220)
Q Consensus 212 ~~y~~~~ 218 (220)
|.|||.|
T Consensus 14 rsyglpt 20 (44)
T d1cixa_ 14 RSYGLPT 20 (44)
T ss_dssp CCTTSCS
T ss_pred EccCCCC
Done!