BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027715
         (220 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2LJW|A Chain A, Solution Nmr Structure Of Alr2454 Protein From Nostoc Sp.
           Strain Pcc 7120, Northeast Structural Genomics
           Consortium Target Nsr264
          Length = 110

 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/108 (46%), Positives = 68/108 (62%), Gaps = 7/108 (6%)

Query: 111 FSGLDLATLIRKKYGRSYDVQLIKKEFMGRNLLALNVMWKYMEQRSFPLTEEEYILRLDD 170
            +G +L  L+  K+G SYDVQ  + +  G+  + L VMWKY+EQ SFP+ E EY   LD 
Sbjct: 1   MTGQELRQLLLDKWGYSYDVQFRRTQ--GK--IFLQVMWKYLEQASFPMNETEYQEHLDS 56

Query: 171 VANTLKCWGAVSHIRNSLAKLKERPRIGKAVSIFIDMDESGGRANEWI 218
           VAN L   G    ++  + + KERPR+GKAVSI +D+   G RA+EWI
Sbjct: 57  VANYLHALGGAVQVKTFITQTKERPRLGKAVSIPLDL---GERASEWI 101


>pdb|4IPT|A Chain A, The Crystal Structure Of A Short-chain
           Dehydrogenases/reductase (ethylated) From Veillonella
           Parvula Dsm 2008
          Length = 221

 Score = 26.9 bits (58), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 83  ESPKDENGVNSELLRENLERIVGVDDSTFSGLDLATLIRKKYGRSYDVQLIKKEFMGRNL 142
           ES  D   +   L R+N+ R++GV  +  SG +    + K    +  +  ++ E   RN+
Sbjct: 83  ESGSDXASIVKALSRKNIRRVIGVSXAGLSG-EFPVALEKWTFDNLPISYVQGERQARNV 141

Query: 143 L 143
           L
Sbjct: 142 L 142


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,565,879
Number of Sequences: 62578
Number of extensions: 244602
Number of successful extensions: 530
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 526
Number of HSP's gapped (non-prelim): 4
length of query: 220
length of database: 14,973,337
effective HSP length: 95
effective length of query: 125
effective length of database: 9,028,427
effective search space: 1128553375
effective search space used: 1128553375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)