Query 027715
Match_columns 220
No_of_seqs 73 out of 75
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 14:05:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027715.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027715hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11267 DUF3067: Protein of u 100.0 1.7E-55 3.7E-60 344.1 8.4 99 113-218 1-99 (99)
2 PF10820 DUF2543: Protein of u 72.3 2.7 5.8E-05 32.7 1.9 15 166-180 66-80 (81)
3 PRK00945 acetyl-CoA decarbonyl 50.4 12 0.00025 32.2 2.1 21 155-175 150-171 (171)
4 PF13592 HTH_33: Winged helix- 45.7 18 0.00038 25.2 2.1 24 109-132 3-26 (60)
5 PF03732 Retrotrans_gag: Retro 45.6 65 0.0014 22.2 5.0 69 111-193 27-96 (96)
6 TIGR00315 cdhB CO dehydrogenas 44.0 17 0.00037 30.8 2.1 19 155-173 142-161 (162)
7 TIGR03853 matur_matur probable 36.4 60 0.0013 25.1 3.8 33 91-123 18-57 (77)
8 PF15169 DUF4564: Domain of un 35.3 26 0.00056 31.1 1.9 71 110-183 79-165 (187)
9 PF14624 Vwaint: VWA / Hh pro 34.1 16 0.00036 27.8 0.5 13 120-132 24-36 (80)
10 PF14384 DUF4415: Domain of un 32.0 28 0.0006 24.9 1.3 17 192-208 21-38 (62)
11 PF13204 DUF4038: Protein of u 31.7 73 0.0016 28.6 4.2 43 138-180 42-102 (289)
12 COG1880 CdhB CO dehydrogenase/ 28.7 45 0.00097 29.3 2.3 19 155-173 150-169 (170)
13 PF04787 Pox_H7: Late protein 27.3 73 0.0016 27.4 3.2 71 108-180 14-90 (147)
14 PF10678 DUF2492: Protein of u 27.1 1.2E+02 0.0025 23.5 4.0 33 91-123 20-59 (78)
15 PF06252 DUF1018: Protein of u 26.1 63 0.0014 25.2 2.5 36 91-126 1-39 (119)
16 PF14786 Death_2: Tube Death d 25.8 31 0.00067 29.3 0.8 42 165-206 94-137 (137)
17 cd00454 Trunc_globin Truncated 25.6 1.7E+02 0.0037 21.7 4.7 33 156-188 70-102 (116)
18 PF10095 DUF2333: Uncharacteri 23.9 74 0.0016 30.5 3.0 37 157-193 148-195 (336)
19 KOG0182 20S proteasome, regula 22.8 1.7E+02 0.0037 27.0 4.9 68 97-173 176-244 (246)
20 PF00150 Cellulase: Cellulase 22.5 1.7E+02 0.0037 24.1 4.5 42 138-179 33-75 (281)
21 cd07358 harmonin_N_like_1 Doma 22.4 94 0.002 24.3 2.8 38 152-189 8-46 (78)
No 1
>PF11267 DUF3067: Protein of unknown function (DUF3067); InterPro: IPR021420 This family of proteins has no known function. ; PDB: 2LJW_A.
Probab=100.00 E-value=1.7e-55 Score=344.07 Aligned_cols=99 Identities=57% Similarity=1.011 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhCccccceeEEEeecCcceEEEeeehhhhcccCCCCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHhcC
Q 027715 113 GLDLATLIRKKYGRSYDVQLIKKEFMGRNLLALNVMWKYMEQRSFPLTEEEYILRLDDVANTLKCWGAVSHIRNSLAKLK 192 (220)
Q Consensus 113 G~EL~~LL~~KWG~sYDvqL~r~~~~Gk~~lyLqVMWkyLEQrSFPLtE~EYlehLd~VAe~Ln~wG~~d~Vr~~L~~T~ 192 (220)
|+||++||++|||+||||||+|++ ++|||||||+||||+||||||+||++||++||++||+||++++||+||++|+
T Consensus 1 g~eL~~ll~~KwG~sYDvql~r~~----~~v~lqVMW~yLeQ~SFPltE~eY~~hL~~va~~L~~wG~~~~Vr~~l~~t~ 76 (99)
T PF11267_consen 1 GQELRDLLREKWGRSYDVQLRRRR----GRVYLQVMWKYLEQRSFPLTEEEYLEHLDAVAEYLNAWGQADQVRAFLEETR 76 (99)
T ss_dssp HHHHHHHHHHHHSS-EEEEEEEET----TEEEEEEEEEETTSTT-SS-HHHHHHHHHHHHHHHHHHS-HHHHHHHHHH--
T ss_pred ChHHHHHHHHHhCCcceeEEEEEc----CEEEEEEehhhccCCCcCCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHhCC
Confidence 789999999999999999999995 6699999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEeeecCCCCccccccc
Q 027715 193 ERPRIGKAVSIFIDMDESGGRANEWI 218 (220)
Q Consensus 193 eRPRlGkAVSIpLdLd~~g~R~sEWi 218 (220)
+|||+|||||||||| |+|++|||
T Consensus 77 ~rPRlGkAVsipL~l---~~r~~Ewl 99 (99)
T PF11267_consen 77 ERPRLGKAVSIPLDL---GERASEWL 99 (99)
T ss_dssp ---BTTB-EEEEE-----HHHHHHHH
T ss_pred CCCCCCeEEEEeecC---CchhhhcC
Confidence 999999999999999 99999997
No 2
>PF10820 DUF2543: Protein of unknown function (DUF2543); InterPro: IPR020251 This entry contains proteins with no known function.
Probab=72.28 E-value=2.7 Score=32.71 Aligned_cols=15 Identities=53% Similarity=1.006 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhcCc
Q 027715 166 LRLDDVANTLKCWGA 180 (220)
Q Consensus 166 ehLd~VAe~Ln~wG~ 180 (220)
.++|+||+.||.||.
T Consensus 66 ~rID~IA~fLNqWGN 80 (81)
T PF10820_consen 66 QRIDDIANFLNQWGN 80 (81)
T ss_pred HHHHHHHHHHHHhcc
Confidence 479999999999995
No 3
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=50.45 E-value=12 Score=32.16 Aligned_cols=21 Identities=48% Similarity=0.858 Sum_probs=18.4
Q ss_pred cCCC-CCHHHHHHHHHHHHHHH
Q 027715 155 RSFP-LTEEEYILRLDDVANTL 175 (220)
Q Consensus 155 rSFP-LtE~EYlehLd~VAe~L 175 (220)
-||| |++++|++-|+++.+.|
T Consensus 150 ~s~~~~~~~~~~~~l~~li~~~ 171 (171)
T PRK00945 150 MSFPNLSKEEYLEYLDELIDNL 171 (171)
T ss_pred eecCCCCHHHHHHHHHHHHhhC
Confidence 3899 99999999999998764
No 4
>PF13592 HTH_33: Winged helix-turn helix
Probab=45.66 E-value=18 Score=25.24 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=20.4
Q ss_pred CcccHHHHHHHHHHHhCcccccee
Q 027715 109 STFSGLDLATLIRKKYGRSYDVQL 132 (220)
Q Consensus 109 ~~mtG~EL~~LL~~KWG~sYDvqL 132 (220)
...|..+|+++|.++||..|..+=
T Consensus 3 ~~wt~~~i~~~I~~~fgv~ys~~~ 26 (60)
T PF13592_consen 3 GRWTLKEIAAYIEEEFGVKYSPSG 26 (60)
T ss_pred CcccHHHHHHHHHHHHCCEEcHHH
Confidence 457899999999999999997663
No 5
>PF03732 Retrotrans_gag: Retrotransposon gag protein ; InterPro: IPR005162 Transposable elements (TEs) promote various chromosomal rearrangements more efficiently, and often more specifically, than other cellular processes. Retrotransposons are structurally similar to retroviruses and are bounded by long terminal repeats. This entry represents eukaryotic Gag or capsid-related retrotranspon-related proteins. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved.
Probab=45.60 E-value=65 Score=22.24 Aligned_cols=69 Identities=13% Similarity=0.145 Sum_probs=53.5
Q ss_pred ccHHHHHHHHHHHhCccccceeEEEeecCcceEEEeeehhhhcccCCCCCHHHHHHHHHHHHHHHHh-cCchHHHHHHHH
Q 027715 111 FSGLDLATLIRKKYGRSYDVQLIKKEFMGRNLLALNVMWKYMEQRSFPLTEEEYILRLDDVANTLKC-WGAVSHIRNSLA 189 (220)
Q Consensus 111 mtG~EL~~LL~~KWG~sYDvqL~r~~~~Gk~~lyLqVMWkyLEQrSFPLtE~EYlehLd~VAe~Ln~-wG~~d~Vr~~L~ 189 (220)
-|=.+|...+.++++-+......+.+ +.-|-| =-.|=.+|..++..++..+.. +.-...|..|+.
T Consensus 27 ~~W~~~~~~~~~~f~~~~~~~~~~~~------------l~~l~Q--~~esv~~y~~rf~~l~~~~~~~~~e~~~v~~f~~ 92 (96)
T PF03732_consen 27 ITWEEFKDAFRKRFFPPDRKEQARQE------------LNSLRQ--GNESVREYVNRFRELARRAPPPMDEEMLVERFIR 92 (96)
T ss_pred CCHHHHHHHHHHHHhhhhccccchhh------------hhhhhc--cCCcHHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Confidence 45679999999999988655544432 234555 237889999999999999995 999999999998
Q ss_pred hcCC
Q 027715 190 KLKE 193 (220)
Q Consensus 190 ~T~e 193 (220)
..++
T Consensus 93 GL~~ 96 (96)
T PF03732_consen 93 GLRP 96 (96)
T ss_pred CCCC
Confidence 7653
No 6
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=44.04 E-value=17 Score=30.85 Aligned_cols=19 Identities=37% Similarity=0.655 Sum_probs=16.3
Q ss_pred cCCC-CCHHHHHHHHHHHHH
Q 027715 155 RSFP-LTEEEYILRLDDVAN 173 (220)
Q Consensus 155 rSFP-LtE~EYlehLd~VAe 173 (220)
-||| |+++||++-|+.|.+
T Consensus 142 ~Sf~n~~~~~~~~~l~~~~~ 161 (162)
T TIGR00315 142 YSFPNLSKDEYLDYLRKLLA 161 (162)
T ss_pred eeccccCHHHHHHHHHHHhc
Confidence 3899 999999999998754
No 7
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=36.36 E-value=60 Score=25.13 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=24.5
Q ss_pred cChHHHHHhHHHHhcCCC-------CcccHHHHHHHHHHH
Q 027715 91 VNSELLRENLERIVGVDD-------STFSGLDLATLIRKK 123 (220)
Q Consensus 91 ~~s~~~r~~l~r~~g~~~-------~~mtG~EL~~LL~~K 123 (220)
++.+.++.-++..+|.+. +.||-.+|.++|.+|
T Consensus 18 ~t~~~L~~~i~~~FG~~arFhTCSa~~m~a~~Li~FL~~k 57 (77)
T TIGR03853 18 YTRESLKAAIEQKFGEDARFHTCSAEGMTADELLQFLLKK 57 (77)
T ss_pred cCHHHHHHHHHHHhCCCceEeecccccCCHHHHHHHHHHC
Confidence 344567777788888874 678888888888765
No 8
>PF15169 DUF4564: Domain of unknown function (DUF4564)
Probab=35.30 E-value=26 Score=31.08 Aligned_cols=71 Identities=18% Similarity=0.316 Sum_probs=44.5
Q ss_pred cccHHHHHHHHHHHhCcccc-------------ceeEEEeecCcceEEEeeehhhhcccCCCCCHHHHH---HHHHHHHH
Q 027715 110 TFSGLDLATLIRKKYGRSYD-------------VQLIKKEFMGRNLLALNVMWKYMEQRSFPLTEEEYI---LRLDDVAN 173 (220)
Q Consensus 110 ~mtG~EL~~LL~~KWG~sYD-------------vqL~r~~~~Gk~~lyLqVMWkyLEQrSFPLtE~EYl---ehLd~VAe 173 (220)
.|...-|.+.++..|-.-++ |+=.+.++.|++.. ||=.|----|.|||+..|+ ...++||.
T Consensus 79 ~lk~~nl~~~il~~~~~g~~~vV~~L~~i~~v~Veee~vry~g~g~~---v~L~f~tG~siPLTqsa~~G~~~dve~IA~ 155 (187)
T PF15169_consen 79 TLKYFNLYEKILTLWKQGHEQVVVDLSEIRDVNVEEEKVRYFGKGYL---VVLRFATGFSIPLTQSATLGDRSDVEAIAK 155 (187)
T ss_pred EEEeeeHHHHHHHHhhcCCCeEEEEhhHcceEEEEEEeeccCCcceE---EEEEccCCcceeccceEEecCchHHHHHHH
Confidence 45555566666665544322 33344456677653 3345555668999999998 66788888
Q ss_pred HHHhcCchHH
Q 027715 174 TLKCWGAVSH 183 (220)
Q Consensus 174 ~Ln~wG~~d~ 183 (220)
.||.|=..+.
T Consensus 156 ~I~~FL~l~~ 165 (187)
T PF15169_consen 156 LINKFLELNP 165 (187)
T ss_pred HHHHHHhhcc
Confidence 8887644433
No 9
>PF14624 Vwaint: VWA / Hh protein intein-like
Probab=34.08 E-value=16 Score=27.76 Aligned_cols=13 Identities=31% Similarity=0.677 Sum_probs=10.4
Q ss_pred HHHHhCcccccee
Q 027715 120 IRKKYGRSYDVQL 132 (220)
Q Consensus 120 L~~KWG~sYDvqL 132 (220)
.++|||+.|=+.+
T Consensus 24 ~y~~~Gr~YllS~ 36 (80)
T PF14624_consen 24 YYERWGRHYLLSL 36 (80)
T ss_pred HHHHhhHHHHHHH
Confidence 3899999996654
No 10
>PF14384 DUF4415: Domain of unknown function (DUF4415)
Probab=32.03 E-value=28 Score=24.91 Aligned_cols=17 Identities=35% Similarity=0.513 Sum_probs=11.2
Q ss_pred CCCC-CCCceEEEeeecC
Q 027715 192 KERP-RIGKAVSIFIDMD 208 (220)
Q Consensus 192 ~eRP-RlGkAVSIpLdLd 208 (220)
+.+| .-.+.|||+||-|
T Consensus 21 ~~~~~~~k~~Vtirld~d 38 (62)
T PF14384_consen 21 RGPPKKPKKQVTIRLDPD 38 (62)
T ss_pred CCCCCCCceeEEEEeCHH
Confidence 3344 3456999999863
No 11
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=31.69 E-value=73 Score=28.58 Aligned_cols=43 Identities=23% Similarity=0.334 Sum_probs=25.9
Q ss_pred cCcceEEEeeehhhhcc--------cCCCCC----------HHHHHHHHHHHHHHHHhcCc
Q 027715 138 MGRNLLALNVMWKYMEQ--------RSFPLT----------EEEYILRLDDVANTLKCWGA 180 (220)
Q Consensus 138 ~Gk~~lyLqVMWkyLEQ--------rSFPLt----------E~EYlehLd~VAe~Ln~wG~ 180 (220)
+|.+.|-++|..++-+. ..|+=. ..+|+.||+.+++.|++.|-
T Consensus 42 qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi 102 (289)
T PF13204_consen 42 QGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGI 102 (289)
T ss_dssp TT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-
T ss_pred CCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCC
Confidence 67888888888776533 333221 57899999999999998774
No 12
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=28.71 E-value=45 Score=29.33 Aligned_cols=19 Identities=42% Similarity=0.873 Sum_probs=16.7
Q ss_pred cCCC-CCHHHHHHHHHHHHH
Q 027715 155 RSFP-LTEEEYILRLDDVAN 173 (220)
Q Consensus 155 rSFP-LtE~EYlehLd~VAe 173 (220)
-||| |+..||+.-|+++.+
T Consensus 150 ~SFpNl~kde~~~~L~ell~ 169 (170)
T COG1880 150 YSFPNLSKDEYLAYLDELLD 169 (170)
T ss_pred ccCCCcCHHHHHHHHHHHhc
Confidence 4899 999999999998764
No 13
>PF04787 Pox_H7: Late protein H7; InterPro: IPR006872 This is a family of poxvirus late H7 proteins.
Probab=27.25 E-value=73 Score=27.42 Aligned_cols=71 Identities=15% Similarity=0.240 Sum_probs=52.9
Q ss_pred CCcccHHHHHHHHHHHhCccccceeEEEeecCcceEEEeee------hhhhcccCCCCCHHHHHHHHHHHHHHHHhcCc
Q 027715 108 DSTFSGLDLATLIRKKYGRSYDVQLIKKEFMGRNLLALNVM------WKYMEQRSFPLTEEEYILRLDDVANTLKCWGA 180 (220)
Q Consensus 108 ~~~mtG~EL~~LL~~KWG~sYDvqL~r~~~~Gk~~lyLqVM------WkyLEQrSFPLtE~EYlehLd~VAe~Ln~wG~ 180 (220)
.++|+-.|+..|+..=.|+..-=.+.-.+-- +.+++-.- =.||.+.-=|++.+||.+|-.+||.-|+.+.-
T Consensus 14 ~g~Lst~DI~~l~~~L~~~~P~~tifsid~~--g~f~iDF~Yd~~~AS~YL~~~~~~i~pde~~~~~~~IA~eLT~~di 90 (147)
T PF04787_consen 14 SGELSTKDIMVLKRHLLNKHPNDTIFSIDED--GKFFIDFEYDDCLASDYLNMKTRPITPDEYKKYSSAIAKELTNYDI 90 (147)
T ss_pred hccccHHHHHHHHHHHhcCCCcceeeeEcCC--CCEEEEeeeCCchHhhhhcCCCccCCHHHHHHHHHHHHHHHHHHHH
Confidence 3478889999999988888764444433212 33555433 36899999999999999999999999988754
No 14
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=27.08 E-value=1.2e+02 Score=23.51 Aligned_cols=33 Identities=15% Similarity=0.294 Sum_probs=23.2
Q ss_pred cChHHHHHhHHHHhcCCC-------CcccHHHHHHHHHHH
Q 027715 91 VNSELLRENLERIVGVDD-------STFSGLDLATLIRKK 123 (220)
Q Consensus 91 ~~s~~~r~~l~r~~g~~~-------~~mtG~EL~~LL~~K 123 (220)
++-+.+...++..+|.+. +.||-.+|.+.|.+|
T Consensus 20 ~t~~~L~~ai~~~FG~~arFhTCSae~m~a~eLv~FL~~r 59 (78)
T PF10678_consen 20 YTKEELKAAIIEKFGEDARFHTCSAEGMTADELVDFLEER 59 (78)
T ss_pred cCHHHHHHHHHHHhCCCceEEecCCCCCCHHHHHHHHHHc
Confidence 344566667777888874 568888888877765
No 15
>PF06252 DUF1018: Protein of unknown function (DUF1018); InterPro: IPR009363 This family consists of several bacterial and phage proteins, related to Gp16 of phage Mu, of unknown function.
Probab=26.12 E-value=63 Score=25.21 Aligned_cols=36 Identities=22% Similarity=0.474 Sum_probs=28.4
Q ss_pred cChHHHHHhHHHHhcCCCC-cccHHHHHHHHH--HHhCc
Q 027715 91 VNSELLRENLERIVGVDDS-TFSGLDLATLIR--KKYGR 126 (220)
Q Consensus 91 ~~s~~~r~~l~r~~g~~~~-~mtG~EL~~LL~--~KWG~ 126 (220)
|+.|..|.-|.+.+|++++ +||-.||..+|- ++-|-
T Consensus 1 lddd~YR~~L~~~~Gk~S~k~lt~~el~~vl~~l~~~G~ 39 (119)
T PF06252_consen 1 LDDDTYRALLQRVTGKSSSKDLTEAELEKVLDELKRLGF 39 (119)
T ss_pred CCHHHHHHHHHHHhChhhHHHCCHHHHHHHHHHHHHccC
Confidence 3557789999999999964 799999998874 34453
No 16
>PF14786 Death_2: Tube Death domain; PDB: 1D2Z_B.
Probab=25.78 E-value=31 Score=29.34 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhcCchHHHH-HHH-HhcCCCCCCCceEEEeee
Q 027715 165 ILRLDDVANTLKCWGAVSHIR-NSL-AKLKERPRIGKAVSIFID 206 (220)
Q Consensus 165 lehLd~VAe~Ln~wG~~d~Vr-~~L-~~T~eRPRlGkAVSIpLd 206 (220)
+.||-.+..-.+-+.++|+|- ++| +..++||.-|-|-.|-+|
T Consensus 94 l~~Ll~LLvkael~rAADyva~~~Lke~~p~RP~~GPaA~i~~~ 137 (137)
T PF14786_consen 94 LGHLLQLLVKAELFRAADYVAVDILKEEPPARPDDGPAAPIDLD 137 (137)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHTT--------SSSTTS---B-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Confidence 456666666667778888888 666 467899999998877654
No 17
>cd00454 Trunc_globin Truncated hemoglobins (trHbs) are a family of oxygen-binding heme proteins found in cyanobacteria, eubacteria, unicellular eukaryotes, and plants. The truncated hemoglobins have a characteristic two-over-two alpha helical folding pattern that is distinct from the three-over-three pattern found in other globins. A subset of these have been demonstrated to form homodimers.
Probab=25.61 E-value=1.7e+02 Score=21.74 Aligned_cols=33 Identities=30% Similarity=0.536 Sum_probs=29.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCchHHHHHHH
Q 027715 156 SFPLTEEEYILRLDDVANTLKCWGAVSHIRNSL 188 (220)
Q Consensus 156 SFPLtE~EYlehLd~VAe~Ln~wG~~d~Vr~~L 188 (220)
.+++|+++|-.=|+.+.+.|...|..+.+++.+
T Consensus 70 ~~~I~~~~f~~~l~~l~~al~~~~~~~~~~~~~ 102 (116)
T cd00454 70 PFPITEEEFDAWLELLRDALDELGVPAELADAL 102 (116)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 579999999999999999999999996666554
No 18
>PF10095 DUF2333: Uncharacterized protein conserved in bacteria (DUF2333); InterPro: IPR016936 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.89 E-value=74 Score=30.49 Aligned_cols=37 Identities=19% Similarity=0.315 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCc-----------hHHHHHHHHhcCC
Q 027715 157 FPLTEEEYILRLDDVANTLKCWGA-----------VSHIRNSLAKLKE 193 (220)
Q Consensus 157 FPLtE~EYlehLd~VAe~Ln~wG~-----------~d~Vr~~L~~T~e 193 (220)
||=||.+|.+-++++-.|+.++.. +|.++.||....+
T Consensus 148 ~PSaEseYr~gi~~L~~Y~~rL~~~~~~~A~FyaRaDNL~~~L~~v~~ 195 (336)
T PF10095_consen 148 FPSAESEYREGIKALRRYNARLADPNNGDAQFYARADNLRAWLKRVEK 195 (336)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhCCCCCCCceeccCcchHHHHHHHHHH
Confidence 799999999999999999999982 6788999965444
No 19
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=22.79 E-value=1.7e+02 Score=27.04 Aligned_cols=68 Identities=19% Similarity=0.152 Sum_probs=40.6
Q ss_pred HHhHHHHhcCCCCcccHHHHHHHHHHHhCccccceeEEEeecCcceEEEeeehhhhcccCCC-CCHHHHHHHHHHHHH
Q 027715 97 RENLERIVGVDDSTFSGLDLATLIRKKYGRSYDVQLIKKEFMGRNLLALNVMWKYMEQRSFP-LTEEEYILRLDDVAN 173 (220)
Q Consensus 97 r~~l~r~~g~~~~~mtG~EL~~LL~~KWG~sYDvqL~r~~~~Gk~~lyLqVMWkyLEQrSFP-LtE~EYlehLd~VAe 173 (220)
-.-||..+-++-. +|=.|+.++-+.----+--..|...+ ++|=.--.++..|. ||++|--+||++|||
T Consensus 176 tsfLEKk~Kk~~~-~t~~e~ve~ai~al~~sl~~Dfk~se--------~EVgvv~~~~p~f~~Ls~~eie~hL~~IAE 244 (246)
T KOG0182|consen 176 TSFLEKKYKKDID-LTFEETVETAISALQSSLGIDFKSSE--------LEVGVVTVDNPEFRILSAEEIEEHLQAIAE 244 (246)
T ss_pred HHHHHHhhccCcc-chHHHHHHHHHHHHHHHHhcccCCcc--------eEEEEEEcCCcceeeccHHHHHHHHHHhhh
Confidence 3478888877732 55555554433333233323322221 33444445777665 999999999999997
No 20
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=22.45 E-value=1.7e+02 Score=24.10 Aligned_cols=42 Identities=24% Similarity=0.509 Sum_probs=28.3
Q ss_pred cCcceEEEeeehhhhcccCCC-CCHHHHHHHHHHHHHHHHhcC
Q 027715 138 MGRNLLALNVMWKYMEQRSFP-LTEEEYILRLDDVANTLKCWG 179 (220)
Q Consensus 138 ~Gk~~lyLqVMWkyLEQrSFP-LtE~EYlehLd~VAe~Ln~wG 179 (220)
+|-+.|=+.|-|..+....-+ ...++|+.+|+.+++...+.|
T Consensus 33 ~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~g 75 (281)
T PF00150_consen 33 LGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYG 75 (281)
T ss_dssp TTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCC
Confidence 444555567778555533322 355699999999999987654
No 21
>cd07358 harmonin_N_like_1 Domains similar to the N-terminal protein-binding module of harmonin. This domain is a putative protein-binding module based on its sequence similarity to the N-terminal domain of harmonin. Harmonin (not belonging to this group) is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein, which organizes the Usher protein network of the inner ear and the retina. This domain is also related to domains found in several other PDZ domain-containing scaffold proteins which organize supramolecular complexes. This subgroup is comprised of uncharacterized PDZ-containing proteins including a protein designated Bos taurus PDZ containing 7 which has an N-terminal PDZ domain and a C-terminal harmonin_N_like domain; however the characterized human PDZ containing 7 containing two PDZ domains does not appear to contain a harmonin_N_like domain.
Probab=22.45 E-value=94 Score=24.33 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=30.5
Q ss_pred hcccC-CCCCHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Q 027715 152 MEQRS-FPLTEEEYILRLDDVANTLKCWGAVSHIRNSLA 189 (220)
Q Consensus 152 LEQrS-FPLtE~EYlehLd~VAe~Ln~wG~~d~Vr~~L~ 189 (220)
+|++. -+|||.|+..-+--+.+|...||.-+-|+.-|+
T Consensus 8 ie~~a~~llte~e~~t~~~~~~~Y~~~G~VE~LV~~Ll~ 46 (78)
T cd07358 8 IQALARRLLTDDEALAVLRHCSRYVHEGGVEDLVRPLLA 46 (78)
T ss_pred HHHHHHhhcccHHHHHHHHhHHHHhcCCCHHHHHHHHHH
Confidence 34444 459999999999999999999888888887764
Done!