Query 027715
Match_columns 220
No_of_seqs 73 out of 75
Neff 2.9
Searched_HMMs 29240
Date Tue Mar 26 00:10:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027715.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027715hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ljw_A ALR2454 protein; novel 100.0 1.6E-57 5.6E-62 359.9 9.9 102 111-219 1-102 (110)
2 3l55_A B-1,4-endoglucanase/cel 59.5 4.3 0.00015 35.7 2.2 40 139-179 65-104 (353)
3 3vx7_B E2; ubiquitin conjugati 46.3 15 0.0005 30.3 3.2 27 159-185 7-33 (152)
4 1h1n_A Endo type cellulase ENG 43.5 16 0.00055 30.3 3.1 34 145-179 50-85 (305)
5 3ndz_A Endoglucanase D; cellot 43.1 12 0.0004 32.3 2.3 38 141-179 57-96 (345)
6 3icg_A Endoglucanase D; cellul 32.3 18 0.00061 32.8 1.8 38 141-179 60-99 (515)
7 3aof_A Endoglucanase; glycosyl 29.2 28 0.00097 28.4 2.4 40 139-179 46-87 (317)
8 1q1v_A DEK protein; winged-hel 28.8 1.1E+02 0.0039 21.6 5.2 41 89-131 10-52 (70)
9 3kzs_A Glycosyl hydrolase fami 26.7 36 0.0012 31.8 2.8 42 138-179 64-120 (463)
10 2exv_A Cytochrome C-551; alpha 26.4 45 0.0015 21.6 2.6 22 147-178 60-81 (82)
11 2bmm_A Thermostable hemoglobin 24.0 1.2E+02 0.0042 21.9 4.8 33 156-188 75-107 (123)
12 2kfp_A Pspto_3016 protein; alp 23.8 49 0.0017 25.1 2.6 22 111-132 1-22 (125)
13 3aq9_A Group 1 truncated hemog 23.2 1.1E+02 0.0039 22.1 4.5 33 156-188 75-107 (121)
14 1dlw_A Hemoglobin; oxygen stor 23.0 1.4E+02 0.0048 21.4 4.9 33 156-188 70-102 (116)
15 2cks_A Endoglucanase E-5; carb 22.3 1.1E+02 0.0037 25.2 4.7 31 146-179 63-93 (306)
16 3dlm_A Histone-lysine N-methyl 21.8 74 0.0025 27.5 3.6 17 181-197 141-157 (213)
17 1cch_A Cytochrome C551; electr 21.7 59 0.002 20.9 2.4 22 147-178 60-81 (82)
18 2ahq_A Sigma-54, RNA polymeras 21.6 1.1E+02 0.0039 22.0 4.1 34 90-123 15-50 (76)
19 2fki_A Protein YJBR; NESG, GFT 21.4 51 0.0018 24.9 2.3 40 111-150 1-42 (126)
20 1ayg_A Cytochrome C-552; elect 21.1 65 0.0022 21.0 2.6 22 147-178 58-79 (80)
21 2gkm_A TRHBN, hemoglobin-like 20.1 1.6E+02 0.0056 21.9 4.9 33 156-188 83-115 (136)
No 1
>2ljw_A ALR2454 protein; novel fold, structural genomics, northeast structural genomi consortium, NESG, PSI-biology, protein structure initiative function; NMR {Nostoc SP}
Probab=100.00 E-value=1.6e-57 Score=359.88 Aligned_cols=102 Identities=48% Similarity=0.842 Sum_probs=99.2
Q ss_pred ccHHHHHHHHHHHhCccccceeEEEeecCcceEEEeeehhhhcccCCCCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHh
Q 027715 111 FSGLDLATLIRKKYGRSYDVQLIKKEFMGRNLLALNVMWKYMEQRSFPLTEEEYILRLDDVANTLKCWGAVSHIRNSLAK 190 (220)
Q Consensus 111 mtG~EL~~LL~~KWG~sYDvqL~r~~~~Gk~~lyLqVMWkyLEQrSFPLtE~EYlehLd~VAe~Ln~wG~~d~Vr~~L~~ 190 (220)
|||+||++||++|||+||||||+|++ ++|||||||+||||+||||||+||++||++||++||+||++++||+||++
T Consensus 1 mtG~eL~~ll~~KWG~sYDvql~r~~----~~vylqVMW~yLeQ~SFPltE~eY~~hL~~va~~L~~wG~~~~Vr~~l~~ 76 (110)
T 2ljw_A 1 MTGQELRQLLLDKWGYSYDVQFRRTQ----GKIFLQVMWKYLEQASFPMNETEYQEHLDSVANYLHALGGAVQVKTFITQ 76 (110)
T ss_dssp CCHHHHHHHHHHHHSSCEEEEEEEET----TEEEEEEEEEETTSTTCSSCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCcceeEEEEEC----CEEEEEeehHhhccCCCCCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 79999999999999999999999973 56999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCceEEEeeecCCCCcccccccc
Q 027715 191 LKERPRIGKAVSIFIDMDESGGRANEWIY 219 (220)
Q Consensus 191 T~eRPRlGkAVSIpLdLd~~g~R~sEWi~ 219 (220)
|++|||+|||||||||| |+|++|||.
T Consensus 77 t~~rPRlGkAVsipLdl---g~r~~E~~~ 102 (110)
T 2ljw_A 77 TKERPRLGKAVSIPLDL---GERASEWII 102 (110)
T ss_dssp CCCCCBTTBCEEEEECC---HHHHHHHHT
T ss_pred CCCCCCCCeEEEEeecC---Cccchhhhh
Confidence 99999999999999999 999999985
No 2
>3l55_A B-1,4-endoglucanase/cellulase; putative beta-1,4-endoglucanase, glycosyl hydrolase family 5, mixed alpha-beta, TIM barrel; HET: MSE; 1.60A {Prevotella bryantii} PDB: 3vdh_A*
Probab=59.51 E-value=4.3 Score=35.65 Aligned_cols=40 Identities=18% Similarity=0.291 Sum_probs=29.5
Q ss_pred CcceEEEeeehhhhcccCCCCCHHHHHHHHHHHHHHHHhcC
Q 027715 139 GRNLLALNVMWKYMEQRSFPLTEEEYILRLDDVANTLKCWG 179 (220)
Q Consensus 139 Gk~~lyLqVMWkyLEQrSFPLtE~EYlehLd~VAe~Ln~wG 179 (220)
|.+.|=+-|-|..+.-...++++ +|+++|+.|++.+.+.|
T Consensus 65 G~N~vRipi~w~~~~~~~g~~d~-~~l~~ld~vVd~a~~~G 104 (353)
T 3l55_A 65 GFNAVRIPVTWYEHMDAEGNVDE-AWMMRVKAIVEYAMNAG 104 (353)
T ss_dssp TEEEEEECCCCGGGBCTTCCBCH-HHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEcccHHHhcCCCCCcCH-HHHHHHHHHHHHHHHCC
Confidence 33444466778888765666765 69999999999987765
No 3
>3vx7_B E2; ubiquitin conjugation; 3.20A {Kluyveromyces marxianus} PDB: 2lpu_A
Probab=46.32 E-value=15 Score=30.27 Aligned_cols=27 Identities=33% Similarity=0.525 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcCchHHHH
Q 027715 159 LTEEEYILRLDDVANTLKCWGAVSHIR 185 (220)
Q Consensus 159 LtE~EYlehLd~VAe~Ln~wG~~d~Vr 185 (220)
||++||.++|..+++.+..|...+.+.
T Consensus 7 l~~~e~~~QL~~l~~~~~~w~~~~~~~ 33 (152)
T 3vx7_B 7 LTLPEYNEQIPNVRSLLTKWAKVERIQ 33 (152)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred ccHHHHHHHHHHHHHHHhhhHhhhccc
Confidence 799999999999999999999887654
No 4
>1h1n_A Endo type cellulase ENGI; hydrolase, glycosyl hydrolase, family 5, subtype, thermophilic, thermophIle, endoglucanase; 1.12A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1gzj_A
Probab=43.52 E-value=16 Score=30.34 Aligned_cols=34 Identities=15% Similarity=0.145 Sum_probs=25.4
Q ss_pred Eeeehhhhcc--cCCCCCHHHHHHHHHHHHHHHHhcC
Q 027715 145 LNVMWKYMEQ--RSFPLTEEEYILRLDDVANTLKCWG 179 (220)
Q Consensus 145 LqVMWkyLEQ--rSFPLtE~EYlehLd~VAe~Ln~wG 179 (220)
+.|-|..++- ...+.+ ++|+++|+.+++.+.+-|
T Consensus 50 i~i~w~~~~~~~~~~~~~-~~~l~~~~~~v~~~~~~g 85 (305)
T 1h1n_A 50 VPFMMERLVPNSMTGSPD-PNYLADLIATVNAITQKG 85 (305)
T ss_dssp EEECHHHHSCSSTTSCCC-HHHHHHHHHHHHHHHHTT
T ss_pred ecccHHHcCCCCCCCCcC-HHHHHHHHHHHHHHHHCC
Confidence 5567988764 245565 579999999999987754
No 5
>3ndz_A Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_A*
Probab=43.14 E-value=12 Score=32.28 Aligned_cols=38 Identities=21% Similarity=0.352 Sum_probs=28.4
Q ss_pred ceEEEeeehhhhccc--CCCCCHHHHHHHHHHHHHHHHhcC
Q 027715 141 NLLALNVMWKYMEQR--SFPLTEEEYILRLDDVANTLKCWG 179 (220)
Q Consensus 141 ~~lyLqVMWkyLEQr--SFPLtE~EYlehLd~VAe~Ln~wG 179 (220)
+.|=+-|-|..+... .++++ ++|+++|+.|++.+.+.|
T Consensus 57 n~vRipi~w~~~~~~~~~~~~~-~~~l~~l~~~v~~a~~~G 96 (345)
T 3ndz_A 57 NTLRLPVTWDGHMGAAPEYTID-QTWMKRVEEIANYAFDND 96 (345)
T ss_dssp CEEEECCCCTTSBCCTTTCCBC-HHHHHHHHHHHHHHHTTT
T ss_pred CEEEEeeehHHhCCCCCCCccC-HHHHHHHHHHHHHHHHCC
Confidence 334456778877665 46777 468999999999998766
No 6
>3icg_A Endoglucanase D; cellulase, xylanase, carbohydrate binding DOM glucanase, carbohydrate metabolism, cellulose degradation, glycosidase; HET: BTB; 2.10A {Clostridium cellulovorans}
Probab=32.33 E-value=18 Score=32.84 Aligned_cols=38 Identities=21% Similarity=0.352 Sum_probs=28.6
Q ss_pred ceEEEeeehhhhccc--CCCCCHHHHHHHHHHHHHHHHhcC
Q 027715 141 NLLALNVMWKYMEQR--SFPLTEEEYILRLDDVANTLKCWG 179 (220)
Q Consensus 141 ~~lyLqVMWkyLEQr--SFPLtE~EYlehLd~VAe~Ln~wG 179 (220)
+.|=+-|-|..+++. .+.+++ +|+++|+.|++++.+.|
T Consensus 60 N~vRipi~w~~~~~~~~~~~~~~-~~l~~~d~vv~~a~~~G 99 (515)
T 3icg_A 60 NTLRLPVTWDGHMGAAPEYTIDQ-TWMKRVEEIANYAFDND 99 (515)
T ss_dssp CEEEECCCCTTSBCCTTTCCBCH-HHHHHHHHHHHHHHTTT
T ss_pred CEEEEccchHHhCCCCCCCccCH-HHHHHHHHHHHHHHHCC
Confidence 434456778887776 366665 69999999999998876
No 7
>3aof_A Endoglucanase; glycosyl hydrolase family 5, cellulase, biofuel, hyperthermo hydrolase; HET: BMA; 1.29A {Thermotoga maritima} PDB: 3amg_A* 3amc_A 3amd_A 3mmu_A 3mmw_A 3azs_A* 3azr_A* 3azt_A*
Probab=29.23 E-value=28 Score=28.40 Aligned_cols=40 Identities=18% Similarity=0.375 Sum_probs=27.6
Q ss_pred CcceEEEeeehhhhcccC--CCCCHHHHHHHHHHHHHHHHhcC
Q 027715 139 GRNLLALNVMWKYMEQRS--FPLTEEEYILRLDDVANTLKCWG 179 (220)
Q Consensus 139 Gk~~lyLqVMWkyLEQrS--FPLtE~EYlehLd~VAe~Ln~wG 179 (220)
|-+.|=+-|-|..++... |..+ ++++++|+.+++.+.+.|
T Consensus 46 G~n~vR~~i~w~~~~~~~~~~~~~-~~~~~~~d~~v~~a~~~G 87 (317)
T 3aof_A 46 GFSHVRIPIRWSTHAYAFPPYKIM-DRFFKRVDEVINGALKRG 87 (317)
T ss_dssp TCSEEEECCCGGGGBCSSTTCCBC-HHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeccHHHhcCCCCCCcCC-HHHHHHHHHHHHHHHHCC
Confidence 334444557787776433 4455 468999999999988766
No 8
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=28.84 E-value=1.1e+02 Score=21.57 Aligned_cols=41 Identities=15% Similarity=0.370 Sum_probs=34.4
Q ss_pred cCcChHHHHHhHHHHhcCCC-CcccHHHHHHHHHHHh-Cccccce
Q 027715 89 NGVNSELLRENLERIVGVDD-STFSGLDLATLIRKKY-GRSYDVQ 131 (220)
Q Consensus 89 ~g~~s~~~r~~l~r~~g~~~-~~mtG~EL~~LL~~KW-G~sYDvq 131 (220)
++.+.+.+++.+..++...| +.+|-..++..|.+++ | +|+.
T Consensus 10 ~~Psd~ei~~~I~~IL~~aDL~tvT~K~VR~~Le~~~pg--~dLs 52 (70)
T 1q1v_A 10 KPPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPT--YDLT 52 (70)
T ss_dssp CCCCHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHCSS--SCCS
T ss_pred CCcCHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHccC--CCCh
Confidence 45566788999999999976 6899999999999999 7 6665
No 9
>3kzs_A Glycosyl hydrolase family 5; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=26.70 E-value=36 Score=31.84 Aligned_cols=42 Identities=19% Similarity=0.190 Sum_probs=28.4
Q ss_pred cCcceEEEeee-----hhhhcccCCCCC-------H---HHHHHHHHHHHHHHHhcC
Q 027715 138 MGRNLLALNVM-----WKYMEQRSFPLT-------E---EEYILRLDDVANTLKCWG 179 (220)
Q Consensus 138 ~Gk~~lyLqVM-----WkyLEQrSFPLt-------E---~EYlehLd~VAe~Ln~wG 179 (220)
.|.+.|=++|. |..-++.+|+-. + ++|+.|++.+++.++..|
T Consensus 64 qGFNvIq~~vl~~~p~~n~~g~~pf~~~~df~~~n~pn~~~YF~h~d~~I~~a~~~G 120 (463)
T 3kzs_A 64 RGYNVIQVQTLNNVPSMNIYGQYSMTDGYNFKNINQKGVYGYWDHMDYIIRTAAKKG 120 (463)
T ss_dssp TTCCEEEEESCSSSSCBCTTSCBSCSSTTCCTTCCCTTCCCHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEEeecCCCCCCcCCCCCcCCCcccccCCCcCHHHHHHHHHHHHHHHHHCC
Confidence 57777766664 333355445321 2 489999999999998755
No 10
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=26.43 E-value=45 Score=21.64 Aligned_cols=22 Identities=14% Similarity=0.099 Sum_probs=16.9
Q ss_pred eehhhhcccCCCCCHHHHHHHHHHHHHHHHhc
Q 027715 147 VMWKYMEQRSFPLTEEEYILRLDDVANTLKCW 178 (220)
Q Consensus 147 VMWkyLEQrSFPLtE~EYlehLd~VAe~Ln~w 178 (220)
+|+.+ .||++| +++|+.||...
T Consensus 60 ~Mp~~------~ls~~e----i~~l~~yl~~l 81 (82)
T 2exv_A 60 PMPPN------AVSDDE----AQTLAKWVLSQ 81 (82)
T ss_dssp CBCCC------CCCHHH----HHHHHHHHHTC
T ss_pred CCCCC------CCCHHH----HHHHHHHHHhC
Confidence 57765 799876 78899998753
No 11
>2bmm_A Thermostable hemoglobin from thermobifida fusca; bacterial hemoglobin, thermostable protein, oxygen storage/transport; HET: HEM; 2.48A {Thermobifida fusca}
Probab=23.99 E-value=1.2e+02 Score=21.93 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=28.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCchHHHHHHH
Q 027715 156 SFPLTEEEYILRLDDVANTLKCWGAVSHIRNSL 188 (220)
Q Consensus 156 SFPLtE~EYlehLd~VAe~Ln~wG~~d~Vr~~L 188 (220)
.||+|+++|-.=|+...+.|...|..+.+++.+
T Consensus 75 ~~~I~~~~f~~wl~~~~~al~e~~~~~~~~~~~ 107 (123)
T 2bmm_A 75 PYRIGAEERDRWLTHMRAAVDDLALPAHLEQQL 107 (123)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 589999999999999999999999767666654
No 12
>2kfp_A Pspto_3016 protein; alpha, beta, double-WING, structural genomics, PSI-2, protein structure initiative; NMR {Pseudomonas syringae} PDB: 3h9x_A
Probab=23.77 E-value=49 Score=25.13 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=20.1
Q ss_pred ccHHHHHHHHHHHhCcccccee
Q 027715 111 FSGLDLATLIRKKYGRSYDVQL 132 (220)
Q Consensus 111 mtG~EL~~LL~~KWG~sYDvqL 132 (220)
||-.+|++++++++|...|..+
T Consensus 1 M~~~~l~~y~l~~pg~~~~~p~ 22 (125)
T 2kfp_A 1 MNRQQFIDYAQKKYDTKPDHPW 22 (125)
T ss_dssp CCHHHHHHHHHHHTCCCCBCSC
T ss_pred CCHHHHHHHHHhCCCCEeECCc
Confidence 6788999999999999999877
No 13
>3aq9_A Group 1 truncated hemoglobin; 2/2 fold hemoglobin, nitric oxide detoxification, oxygen BIN; HET: HEM; 1.74A {Tetrahymena pyriformis} PDB: 3aq5_A* 3aq6_A* 3aq8_A* 3aq7_A*
Probab=23.18 E-value=1.1e+02 Score=22.10 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=28.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCchHHHHHHH
Q 027715 156 SFPLTEEEYILRLDDVANTLKCWGAVSHIRNSL 188 (220)
Q Consensus 156 SFPLtE~EYlehLd~VAe~Ln~wG~~d~Vr~~L 188 (220)
.||+|+++|-.=|+...+.|...|..+.+++.+
T Consensus 75 ~~~I~~~~f~~wl~~~~~al~~~~~~~~~~~~~ 107 (121)
T 3aq9_A 75 GMNLQNLHFDAIIENLAATLKELGVTDAVINEA 107 (121)
T ss_dssp TSCBCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 579999999999999999999999877766554
No 14
>1dlw_A Hemoglobin; oxygen storage/transport complex; HET: HEM; 1.54A {Paramecium caudatum} SCOP: a.1.1.1 PDB: 1uvy_A*
Probab=23.05 E-value=1.4e+02 Score=21.36 Aligned_cols=33 Identities=6% Similarity=0.206 Sum_probs=28.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCchHHHHHHH
Q 027715 156 SFPLTEEEYILRLDDVANTLKCWGAVSHIRNSL 188 (220)
Q Consensus 156 SFPLtE~EYlehLd~VAe~Ln~wG~~d~Vr~~L 188 (220)
.||+|+++|-.=|+...+.|...|..+.+++.+
T Consensus 70 ~~~I~~~~f~~wl~~~~~al~~~~~~~~~~~~~ 102 (116)
T 1dlw_A 70 NMGVSNAQFTTVIGHLRSALTGAGVAAALVEQT 102 (116)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHHcCcCHHHHHHH
Confidence 589999999999999999999999766655544
No 15
>2cks_A Endoglucanase E-5; carbohydrate metabolism, polysaccharide degradation, glycoside hydrolase family 5, hydrolase, glycosidase; HET: BEN; 1.6A {Thermobifida fusca} PDB: 2ckr_A*
Probab=22.25 E-value=1.1e+02 Score=25.19 Aligned_cols=31 Identities=6% Similarity=0.249 Sum_probs=23.4
Q ss_pred eeehhhhcccCCCCCHHHHHHHHHHHHHHHHhcC
Q 027715 146 NVMWKYMEQRSFPLTEEEYILRLDDVANTLKCWG 179 (220)
Q Consensus 146 qVMWkyLEQrSFPLtE~EYlehLd~VAe~Ln~wG 179 (220)
-|.|. ...++.+++.|+++|+.|++...+.|
T Consensus 63 ~~~~~---~~~~~~~~~~~l~~ld~~v~~a~~~G 93 (306)
T 2cks_A 63 SMYIQ---EDGYETNPRGFTDRMHQLIDMATARG 93 (306)
T ss_dssp EEESS---TTSGGGCHHHHHHHHHHHHHHHHTTT
T ss_pred Eeeec---CCCcccCHHHHHHHHHHHHHHHHHCC
Confidence 34574 23467788789999999999988765
No 16
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=21.81 E-value=74 Score=27.46 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=14.1
Q ss_pred hHHHHHHHHhcCCCCCC
Q 027715 181 VSHIRNSLAKLKERPRI 197 (220)
Q Consensus 181 ~d~Vr~~L~~T~eRPRl 197 (220)
-+.|+.||+.-++||=+
T Consensus 141 r~FIk~YL~~yP~rpmv 157 (213)
T 3dlm_A 141 RDFIEEYVTAYPNRPMV 157 (213)
T ss_dssp HHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHhCCCCceE
Confidence 45699999999999964
No 17
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=21.68 E-value=59 Score=20.94 Aligned_cols=22 Identities=32% Similarity=0.220 Sum_probs=16.7
Q ss_pred eehhhhcccCCCCCHHHHHHHHHHHHHHHHhc
Q 027715 147 VMWKYMEQRSFPLTEEEYILRLDDVANTLKCW 178 (220)
Q Consensus 147 VMWkyLEQrSFPLtE~EYlehLd~VAe~Ln~w 178 (220)
.|+.+ .||++| +.+|+.||...
T Consensus 60 ~Mp~~------~ls~~e----i~~l~~yl~~l 81 (82)
T 1cch_A 60 PMPPN------PVTEEE----AKILAEWVLSL 81 (82)
T ss_dssp CCCCC------SCCHHH----HHHHHHHHHHC
T ss_pred CCCCC------CCCHHH----HHHHHHHHHhc
Confidence 57765 799976 78899988753
No 18
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=21.60 E-value=1.1e+02 Score=22.04 Aligned_cols=34 Identities=24% Similarity=0.484 Sum_probs=29.3
Q ss_pred CcChHHHHHhHHHHhcCCC--CcccHHHHHHHHHHH
Q 027715 90 GVNSELLRENLERIVGVDD--STFSGLDLATLIRKK 123 (220)
Q Consensus 90 g~~s~~~r~~l~r~~g~~~--~~mtG~EL~~LL~~K 123 (220)
++.++.++..+..++..++ .++|-+.|.++|.++
T Consensus 15 ~~S~~~Ik~~Ik~lI~~Ed~~kPlSD~~I~~~L~~~ 50 (76)
T 2ahq_A 15 GLTQGELMKLIKEIVENEDKRKPYSDQEIANILKEK 50 (76)
T ss_dssp SCCHHHHHHHHHHHGGGCCSSSCCCHHHHHHHHTTT
T ss_pred cccHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc
Confidence 4567889999999999984 679999999999776
No 19
>2fki_A Protein YJBR; NESG, GFT-alpha-beta, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Escherichia coli} SCOP: d.198.3.1
Probab=21.35 E-value=51 Score=24.92 Aligned_cols=40 Identities=15% Similarity=0.001 Sum_probs=28.3
Q ss_pred ccHHHHHHHHHHHhCcccccee--EEEeecCcceEEEeeehh
Q 027715 111 FSGLDLATLIRKKYGRSYDVQL--IKKEFMGRNLLALNVMWK 150 (220)
Q Consensus 111 mtG~EL~~LL~~KWG~sYDvqL--~r~~~~Gk~~lyLqVMWk 150 (220)
||-.+|++++..++|...|..+ -...|+-.+++|.=+|+.
T Consensus 1 M~~~~l~~~~l~lpg~~e~~p~~~~~~vfkv~gK~FA~~~~~ 42 (126)
T 2fki_A 1 MTISELLQYCMAKPGAEQSVHNDWKATQIKVEDVLFAMVKEV 42 (126)
T ss_dssp CCHHHHHHHHTTSTTCEEEEETTTTEEEEESSSCEEEEECCB
T ss_pred CCHHHHHHHHHhCCCCEeEcCCCCceEEEEECCEEEEEEEec
Confidence 6789999999999999988876 111222234478777764
No 20
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=21.09 E-value=65 Score=21.03 Aligned_cols=22 Identities=18% Similarity=0.072 Sum_probs=16.8
Q ss_pred eehhhhcccCCCCCHHHHHHHHHHHHHHHHhc
Q 027715 147 VMWKYMEQRSFPLTEEEYILRLDDVANTLKCW 178 (220)
Q Consensus 147 VMWkyLEQrSFPLtE~EYlehLd~VAe~Ln~w 178 (220)
.|+. |.||++| +++|++||...
T Consensus 58 ~Mp~------~~Lsd~e----i~~l~~yl~~l 79 (80)
T 1ayg_A 58 PMPP------QNVTDAE----AKQLAQWILSI 79 (80)
T ss_dssp CBCC------CCCCHHH----HHHHHHHHHHC
T ss_pred CCCC------CCCCHHH----HHHHHHHHHhc
Confidence 4776 3799988 78899998753
No 21
>2gkm_A TRHBN, hemoglobin-like protein HBN, flavohemoglobin; truncated hemoglobin, mutant, oxygen storage/transport complex; HET: HEM; 1.73A {Mycobacterium tuberculosis} PDB: 1idr_A* 1rte_A* 1s56_A* 1s61_A* 2gl3_A* 2gln_A* 2gkn_A*
Probab=20.10 E-value=1.6e+02 Score=21.92 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=28.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCchHHHHHHH
Q 027715 156 SFPLTEEEYILRLDDVANTLKCWGAVSHIRNSL 188 (220)
Q Consensus 156 SFPLtE~EYlehLd~VAe~Ln~wG~~d~Vr~~L 188 (220)
.|++|+++|-.=|+...+.|...|..+.+++.+
T Consensus 83 ~~~I~~~~fd~wl~~l~~al~e~~~~~~~~~~~ 115 (136)
T 2gkm_A 83 GRGITMHHFSLVAGHLADALTAAGVPSETITEI 115 (136)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 589999999999999999999999766666554
Done!