BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027718
(219 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SEZ6|RNH2A_ARATH Ribonuclease H2 subunit A OS=Arabidopsis thaliana GN=At2g25100 PE=2
SV=2
Length = 296
Score = 332 bits (852), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 157/216 (72%), Positives = 185/216 (85%), Gaps = 1/216 (0%)
Query: 1 MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEE 60
M SE P+WAS PC+MGIDEAGRGPVLGPMVYGC+YCP SYQ +LA+L+FADSKTLKEE
Sbjct: 1 MESECLTPEWASQPCLMGIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFADSKTLKEE 60
Query: 61 KREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL 120
KREEL+E LK++ S+GWAVD+IDPRELSAKML KNK NLNEISH+SA+GLI RVL++G+L
Sbjct: 61 KREELYESLKLDKSLGWAVDVIDPRELSAKMLAKNKTNLNEISHNSAMGLIKRVLDMGVL 120
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 180
LTE YLDTVGD +KY+ KLS+RFPSIKFVVSKKADSL+P+VSGASIVAKVTRDR L+ W+
Sbjct: 121 LTEAYLDTVGDPDKYRIKLSERFPSIKFVVSKKADSLFPIVSGASIVAKVTRDRALKEWL 180
Query: 181 FEETAENMHRNFGSGYPGGARCLKLSIVCNNFQSFG 216
EET E+++RNFGSGYPG K +V + FG
Sbjct: 181 VEETGEDINRNFGSGYPGDPET-KAWLVQHKHSVFG 215
>sp|Q5U209|RNH2A_RAT Ribonuclease H2 subunit A OS=Rattus norvegicus GN=Rnaseh2a PE=2
SV=1
Length = 301
Score = 210 bits (535), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 98/190 (51%), Positives = 131/190 (68%), Gaps = 1/190 (0%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE LF ++ +
Sbjct: 27 EPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEED 86
Query: 73 -DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
D VGWA+DI+ P +S ML + K NLN +SHD+A GLI ++ + +T+V++DTVG
Sbjct: 87 GDFVGWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLIQHAMDQNVKVTQVFVDTVGM 146
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 191
E YQA+L QRFP I+ V KADSL+PVVS ASI+AKV RD+ ++ W F E+ + + +
Sbjct: 147 PETYQARLQQRFPGIEVTVKAKADSLFPVVSAASIIAKVARDQAVKNWQFVESLQGLDSD 206
Query: 192 FGSGYPGGAR 201
+GSGYP +
Sbjct: 207 YGSGYPNDPK 216
>sp|Q9VPP5|RNH2A_DROME Ribonuclease H2 subunit A OS=Drosophila melanogaster GN=CG13690
PE=2 SV=1
Length = 347
Score = 209 bits (531), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 103/189 (54%), Positives = 128/189 (67%), Gaps = 4/189 (2%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG YCP + L L ADSK L E KR+ +F D+ +
Sbjct: 70 PCMLGVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKE 129
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
VGWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DTV
Sbjct: 130 YATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTV 189
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 190 GPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWSFPEGLVIKD 249
Query: 190 RNFGSGYPG 198
FGSGYPG
Sbjct: 250 NEFGSGYPG 258
>sp|O75792|RNH2A_HUMAN Ribonuclease H2 subunit A OS=Homo sapiens GN=RNASEH2A PE=1 SV=2
Length = 299
Score = 209 bits (531), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 97/189 (51%), Positives = 128/189 (67%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
PC++G+DEAGRGPVLGPMVY YCP L L ADSKTL E +RE LF ++
Sbjct: 27 EPCVLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDT 86
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG
Sbjct: 87 DFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMP 146
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
E YQA+L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ ++
Sbjct: 147 ETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDY 206
Query: 193 GSGYPGGAR 201
GSGYP +
Sbjct: 207 GSGYPNDPK 215
>sp|Q9CWY8|RNH2A_MOUSE Ribonuclease H2 subunit A OS=Mus musculus GN=Rnaseh2a PE=1 SV=2
Length = 301
Score = 206 bits (524), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 97/189 (51%), Positives = 129/189 (68%), Gaps = 1/189 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ + +T+V++DTVG
Sbjct: 88 DFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
E YQA+L Q FP I+ V KADSL+PVVS ASI AKV RD+ ++ W F E +++ ++
Sbjct: 148 ETYQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDY 207
Query: 193 GSGYPGGAR 201
GSGYP +
Sbjct: 208 GSGYPNDPK 216
>sp|Q2TBT5|RNH2A_BOVIN Ribonuclease H2 subunit A OS=Bos taurus GN=RNASEH2A PE=1 SV=1
Length = 299
Score = 204 bits (519), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 95/190 (50%), Positives = 130/190 (68%), Gaps = 1/190 (0%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
PC++G+DEAGRGPVLGPMVY YCP S + L L ADSKTL E +R+ LF ++ +
Sbjct: 27 EPCVLGVDEAGRGPVLGPMVYAICYCPLSRLEDLEALKVADSKTLSESERDRLFAKMEED 86
Query: 73 -DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
D VGWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ + +V++DTVG
Sbjct: 87 GDFVGWALDVLSPNLISTSMLGRVKYNLNALSHDTATGLVQFALDQGVNVAQVFVDTVGL 146
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 191
E YQ +L QRFP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ +
Sbjct: 147 PETYQERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWKFVEKLQDLDTD 206
Query: 192 FGSGYPGGAR 201
+GSGYP +
Sbjct: 207 YGSGYPNDPK 216
>sp|Q54D13|RNH2A_DICDI Ribonuclease H2 subunit A OS=Dictyostelium discoideum GN=rnaseh2A
PE=3 SV=1
Length = 289
Score = 191 bits (486), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 106/212 (50%), Positives = 136/212 (64%), Gaps = 8/212 (3%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-K 70
S P +MGIDEAGRGPV+GPMVYGC Y P S TL ++ F DSK L E++R++LF+ + +
Sbjct: 18 SEPFVMGIDEAGRGPVMGPMVYGCCYAPISKSTTLKSMKFNDSKKLTEQQRDQLFDKMGE 77
Query: 71 VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 130
N + + D+I LS KML K I+LN ISH+SAIGLI VL G+ + E+YLDTVG
Sbjct: 78 SNKILAYETDVITAEILSEKMLYKKPISLNVISHESAIGLIRSVLKKGVNVQELYLDTVG 137
Query: 131 DAEKYQAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE-----ET 184
+KYQ L + FP I K +VSKKADSLYP+VS ASI AKV RD + F+ +
Sbjct: 138 PPDKYQLMLKKLFPEIGKIIVSKKADSLYPIVSAASIAAKVVRDFEITNKNFDYLNIYDQ 197
Query: 185 AENMHRNFGSGYPGGARCLKLSIVCNNFQSFG 216
E + +FGSGYP K +V N + FG
Sbjct: 198 DEQLSTDFGSGYPSDPLSKKW-LVKNRDKVFG 228
>sp|Q9U6P6|RNH2A_CAEEL Ribonuclease H2 subunit A OS=Caenorhabditis elegans GN=rnh-2 PE=2
SV=1
Length = 297
Score = 176 bits (446), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 94/202 (46%), Positives = 122/202 (60%), Gaps = 8/202 (3%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF----EDL 69
PC++GIDEAGRGPVLGPMVY P L L DSK L E KREE+F ED
Sbjct: 21 PCVLGIDEAGRGPVLGPMVYAAAISPLDQNVELKNLGVDDSKALNEAKREEIFNKMNEDE 80
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+ + +A+ + P +S ML + K +LNE+SH++AI LI L + + E+ +DTV
Sbjct: 81 DIQQIIAYALRCLSPELISCSMLKRQKYSLNEVSHEAAITLIRDALACNVNVVEIKVDTV 140
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM- 188
G YQAKL + FP I V++KADSL+P+VS ASI AKVTRD LR W F E +
Sbjct: 141 GPKATYQAKLEKLFPGISICVTEKADSLFPIVSAASIAAKVTRDSRLRNWQFREKNIKVP 200
Query: 189 HRNFGSGYPGGA---RCLKLSI 207
+GSGYPG + L+LS+
Sbjct: 201 DAGYGSGYPGDPNTKKFLQLSV 222
>sp|Q10236|RNH2A_SCHPO Ribonuclease H2 subunit A OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rnh201 PE=3 SV=1
Length = 326
Score = 169 bits (427), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 100/199 (50%), Positives = 121/199 (60%), Gaps = 16/199 (8%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-- 69
S P +G+DEAGRGPVLGPMVY YCP + L FADSKTL KREEL + +
Sbjct: 61 SQPYRLGVDEAGRGPVLGPMVYAVAYCPVDFD--LTNYGFADSKTLASLKREELLKLICN 118
Query: 70 ---KVNDSVGWAVDIIDPRELSAKMLN-KNKINLNEISHDSAIGLITRVLNIGILLTEVY 125
++ +VGW+ I REL+A ML +NK NLN +HD+ I LI +V GI +TE+Y
Sbjct: 119 KSNELGKNVGWSTMSISARELAAGMLRYRNKYNLNLQAHDTTIDLIKKVYESGINVTEIY 178
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA 185
+DTVG YQ KL FP K V+KKADSL+P+VS ASI AKVTRD L E A
Sbjct: 179 VDTVGPPISYQEKLQAHFPQAKVTVTKKADSLFPIVSLASICAKVTRDIQL------ECA 232
Query: 186 ENMHR--NFGSGYPGGARC 202
R N+GSGY AR
Sbjct: 233 RESIRTENWGSGYSSDART 251
>sp|Q9P5X8|RNH2A_NEUCR Ribonuclease H2 subunit A OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=rnh-201 PE=3 SV=1
Length = 317
Score = 144 bits (363), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 84/202 (41%), Positives = 120/202 (59%), Gaps = 15/202 (7%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFEDL 69
+ PC +G+DEAGRGPVLGPMVY Y P + L +F DSK L R L ++L
Sbjct: 41 NTPCCLGVDEAGRGPVLGPMVYSAFYLPLTLSDPLLKQKHSFDDSKVLTPAVRLSLMKEL 100
Query: 70 -----KVNDSVGWAVDIIDPRELSAKMLNKNK---INLNEISHDSAIGLITRVLNIGILL 121
+++D+ G+A + P +S+ ML +K NLN+ + D+ I LI + G+ +
Sbjct: 101 CTKDTELHDNCGYATSSLSPLSISSGMLKASKAQIYNLNQQAMDATIALIKGIYERGVNV 160
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 181
T++++DT+G YQ KL + FP+ K V+KKADSLYPVVS AS+VAKVTRD L
Sbjct: 161 TDIFIDTIGQPAAYQKKLERVFPTAKITVAKKADSLYPVVSAASVVAKVTRDIAL----- 215
Query: 182 EETAENMHRNFGSGYPGGARCL 203
E + +GSGYP ++C+
Sbjct: 216 EVLWADRTMAWGSGYPSDSKCV 237
>sp|P53942|RNH2A_YEAST Ribonuclease H2 subunit A OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RNH201 PE=1 SV=1
Length = 307
Score = 134 bits (337), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 116/208 (55%), Gaps = 14/208 (6%)
Query: 5 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLN--FADSKTLKEEKR 62
+AL + +P IMGIDEAGRGPVLGPMVY Y YQ N F DSK L + R
Sbjct: 24 SALLEQNDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIR 83
Query: 63 EELFEDLKVND----SVGWAVDIIDPRELS---AKMLNKNKINLNEISHDSAIGLITRVL 115
LF + ++ +G+A I P ++S +K NLNE +HD + LI V+
Sbjct: 84 RMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVI 143
Query: 116 NIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 175
+ L+ VY+DTVG YQ KL QRFP +KF V+KKADSLY +VS AS+VAKVTRD
Sbjct: 144 KQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRD-- 201
Query: 176 LRGWIFEETAENMHRNFGSGYPGGARCL 203
+ E + GSGYP + +
Sbjct: 202 ---ILVESLKRDPDEILGSGYPSDPKTV 226
>sp|Q6LXH7|RNH2_METMP Ribonuclease HII OS=Methanococcus maripaludis (strain S2 / LL)
GN=rnhB PE=3 SV=1
Length = 242
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 101/198 (51%), Gaps = 23/198 (11%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I+G+DEAGRGPVLGPMV + L L DSK L ++KREEL+ + +N+
Sbjct: 22 IIVGLDEAGRGPVLGPMVIASVKIDEKNLYKLNDLELKDSKQLSKKKREELY--IIINEM 79
Query: 75 VGWAVDIIDPRELSAKM--LNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+IDP + +M +N NKI L+ S S I NI I Y+D +
Sbjct: 80 CDVEKIVIDPETIDKQMEIINLNKIELSAFSKLSN-HFIRENDNISI-----YIDACSSS 133
Query: 133 E-----KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN 187
E +++AKL + +++ + KAD Y +VS ASI+AKVTRDR + EE E
Sbjct: 134 EQSFSNQFKAKLINK--NVEIIAEHKADENYKIVSAASIIAKVTRDR-----VIEEYKET 186
Query: 188 MHRNFGSGYPGGARCLKL 205
GSGYP + K
Sbjct: 187 FGE-IGSGYPSDPKTKKF 203
>sp|Q97CG6|RNH2_THEVO Ribonuclease HII OS=Thermoplasma volcanium (strain ATCC 51530 / DSM
4299 / JCM 9571 / NBRC 15438 / GSS1) GN=rnhB PE=3 SV=2
Length = 212
Score = 97.4 bits (241), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 99/186 (53%), Gaps = 20/186 (10%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDEAGRGPV+GPMV + C Y L + DSK L ++RE LF+ K+ + +
Sbjct: 8 GIDEAGRGPVIGPMVISIVCCKEEY---LREIGVKDSKMLSRKRREYLFD--KITKNCAY 62
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
+ ++ P L+ M +++ LN+I + + L+++ I VY+D E+
Sbjct: 63 SYVVVSPETLNKDMASES---LNKIEENYILELLSKAEGI------VYIDCFDVIEERAE 113
Query: 138 KLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYP 197
K + + V KADS+YP VS ASIV+KV RDR + ++ AE + FGSGYP
Sbjct: 114 KYIREKSGKEVVCKHKADSIYPAVSAASIVSKVIRDREI-----DKIAEK-YGFFGSGYP 167
Query: 198 GGARCL 203
R +
Sbjct: 168 SDPRTI 173
>sp|A6VGW0|RNH2_METM7 Ribonuclease HII OS=Methanococcus maripaludis (strain C7 / ATCC
BAA-1331) GN=rnhB PE=3 SV=1
Length = 239
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 105/201 (52%), Gaps = 29/201 (14%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I+G+DEAGRGPV+GPMV + + L L DSK L ++KREEL+ +K+++
Sbjct: 19 IIVGLDEAGRGPVIGPMVIASVKINENDLPKLHDLGLKDSKQLTKKKREELY--IKISEI 76
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE---VYLDTVGD 131
+IDP ++ +M INLN+I +G +++ N I E +Y+D
Sbjct: 77 CDVKKIVIDPEKIDEQM---EIINLNKIE----LGAFSKLANHFIKENENISIYIDACSS 129
Query: 132 AEK-----YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEET 184
E+ ++AKL + +++ + KAD Y +VS ASI+AKVTRD + + IF E
Sbjct: 130 NEQSFSNQFKAKLINK--NVEIIAEHKADENYKIVSAASIIAKVTRDNVIEEYKEIFGE- 186
Query: 185 AENMHRNFGSGYPGGARCLKL 205
GSGYP + K
Sbjct: 187 -------IGSGYPSDPKTKKF 200
>sp|P57673|RNH2_THEAC Ribonuclease HII OS=Thermoplasma acidophilum (strain ATCC 25905 /
DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=rnhB
PE=3 SV=1
Length = 212
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 97/186 (52%), Gaps = 20/186 (10%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDEAGRGPV+GPMV + C S+ L + DSK L ++R ELFE + SV +
Sbjct: 9 GIDEAGRGPVIGPMVISLVCCDLSF---LKEIRVKDSKALTRKRRSELFEKIMGRCSVRY 65
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
I+ P++L+ M + +LN+I D + L+ ++ VY+D E+
Sbjct: 66 R--ILHPKDLNRMMAAE---SLNKIEEDEIVDLLRYADDL------VYIDCYDVIEERAQ 114
Query: 138 KLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYP 197
++ Q + V KAD+++P VS ASIV+KV RD + + + +FGSGYP
Sbjct: 115 EIIQMRSGRQVVCKHKADAIFPAVSAASIVSKVIRDAEI------DRLHDRFGDFGSGYP 168
Query: 198 GGARCL 203
R +
Sbjct: 169 SDPRTI 174
>sp|A6UUM1|RNH2_META3 Ribonuclease HII OS=Methanococcus aeolicus (strain Nankai-3 / ATCC
BAA-1280) GN=rnhB PE=3 SV=1
Length = 277
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 99/208 (47%), Gaps = 34/208 (16%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV 71
+N I+G+DEAGRGPVLGPMV + + L+ DSK + +REELFE +
Sbjct: 18 NNKLIIGLDEAGRGPVLGPMVIALVKIKGQDLKNFEKLDIKDSKKHSKNRREELFEMIIN 77
Query: 72 NDSVGWAVDIIDPRELSAKMLNK--NKINLNEISHDSAIGLITRVL-------------N 116
N V + + L AK ++K N INLN+I + LI VL
Sbjct: 78 NYDVRYEI-------LEAKTIDKLMNTINLNKIELMAFTKLINSVLKEEYPNYKENSKIQ 130
Query: 117 IGILLTEVYLDTVGDAEK-YQAKLSQRF-----PSIKFVVSKKADSLYPVVSGASIVAKV 170
E+Y+D EK + ++ + +IK + KAD Y +VS ASI+AKV
Sbjct: 131 TATPQIEIYIDACSSNEKAFANQIKSKLIVNDENNIKIIAEHKADENYKIVSAASIIAKV 190
Query: 171 TRDRTLRGWIFEETAENMHRNFGSGYPG 198
RDR + + + ++ GSGYP
Sbjct: 191 IRDRKIEEY------KKIYGEIGSGYPS 212
>sp|Q0W5R8|RNH2_UNCMA Ribonuclease HII OS=Uncultured methanogenic archaeon RC-I GN=rnhB
PE=3 SV=1
Length = 224
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 98/185 (52%), Gaps = 16/185 (8%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
IMGIDEAGRGPV+GP+V + + + DSK L +KREE LK +
Sbjct: 9 IMGIDEAGRGPVIGPLVVCGIIVEEKDLPAIEAMGLKDSKKLSAKKREEFAAALK--NKY 66
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
+ + ++ P+E+ A+ +++ NLN + + GLI T YLD +AE+
Sbjct: 67 KYELSVLPPQEIDARFESED--NLNRLEVNCFAGLIRSAKP-----TIAYLDACDVNAER 119
Query: 135 YQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
+ + + ++ V + +ADS YP+VS ASI+AKV RD +R E +E M + G
Sbjct: 120 FGINIKKCLDFELEIVSAHEADSKYPIVSAASIIAKVHRDSLIR-----EISEKMGEDVG 174
Query: 194 SGYPG 198
SGYP
Sbjct: 175 SGYPA 179
>sp|Q74MH3|RNH2_NANEQ Ribonuclease HII OS=Nanoarchaeum equitans (strain Kin4-M) GN=rnhB
PE=3 SV=1
Length = 200
Score = 91.3 bits (225), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 95/187 (50%), Gaps = 20/187 (10%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G+DEAGRGP++GPMV + Y L L DSK L +E+REELF ++ N V +
Sbjct: 5 GVDEAGRGPIIGPMVIALVIGDSGY---LKELGVKDSKLLTKEQREELFNEIVKNSLVKY 61
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
+I+ P + ++ NLNE+ LI + + ++ + +D+ E Y+
Sbjct: 62 --EIVSPSLI-------DRYNLNELEAKVTANLINSIED---EISHIVIDSPERPENYKL 109
Query: 138 KLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYP 197
++ + +++K P+V+ ASIVAKV RDR + E+ E +FGSGYP
Sbjct: 110 RILKYLKKRVKIITKNKGEEDPLVAAASIVAKVIRDREI-----EKIKEQTGIDFGSGYP 164
Query: 198 GGARCLK 204
R K
Sbjct: 165 SDKRTRK 171
>sp|A9A9T9|RNH2_METM6 Ribonuclease HII OS=Methanococcus maripaludis (strain C6 / ATCC
BAA-1332) GN=rnhB PE=3 SV=1
Length = 239
Score = 91.3 bits (225), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 98/196 (50%), Gaps = 13/196 (6%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV 71
S I+G+DEAGRGPV+GPMV + L L DSK L ++KREEL+ +K+
Sbjct: 16 SGKIIVGLDEAGRGPVIGPMVIASVKINEKDLYKLQDLGLKDSKQLSKKKREELY--VKI 73
Query: 72 NDSVGWAVDIIDPRELSAKM--LNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
++ +I P ++ +M N NKI L+ S A I NI I + +
Sbjct: 74 SEICNVKKIVIAPEKIDEQMEITNLNKIELSAFSK-LANHFIKENENISIYIDACSSNEQ 132
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
+ +++AKL + +++ + KAD Y +VS ASI+AKVTRD + E +
Sbjct: 133 SFSNQFKAKLINK--NVEIIAEHKADENYKIVSAASIIAKVTRDNVI------EEYKKTF 184
Query: 190 RNFGSGYPGGARCLKL 205
GSGYP + K
Sbjct: 185 GEIGSGYPSDPKTKKF 200
>sp|A4FWE5|RNH2_METM5 Ribonuclease HII OS=Methanococcus maripaludis (strain C5 / ATCC
BAA-1333) GN=rnhB PE=3 SV=1
Length = 239
Score = 90.9 bits (224), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 101/199 (50%), Gaps = 25/199 (12%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I+G+DEAGRGPV+GPMV + L L DSK L ++KREEL+ K+++
Sbjct: 19 IIVGLDEAGRGPVIGPMVIASVKINEKDLPRLDDLGLRDSKQLSKKKREELY--TKISEI 76
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE---VYLDTVGD 131
+I+P ++ +M INLN+I +G +++ N I E +Y+D
Sbjct: 77 CDVKKVVINPEKIDEQM---EIINLNKIE----LGAFSKLANHFIKENENISIYIDACSS 129
Query: 132 AEK-----YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE 186
E+ ++AKL + +++ + KAD Y +VS ASI+AKVTRD + E +
Sbjct: 130 NEQSFSNQFKAKLINK--NVEIIAEHKADENYKIVSAASIIAKVTRDNVI------EEYK 181
Query: 187 NMHRNFGSGYPGGARCLKL 205
GSGYP + K
Sbjct: 182 KTFGEIGSGYPSDPKTKKF 200
>sp|Q57599|RNH2_METJA Ribonuclease HII OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rnhB PE=1 SV=1
Length = 230
Score = 90.1 bits (222), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 107/205 (52%), Gaps = 29/205 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+GIDEAGRGPVLGPMV ++ L L DSK L + KR L K+ +++
Sbjct: 3 IIGIDEAGRGPVLGPMVVCAFAIEKEREEELKKLGVKDSKELTKNKRAYL---KKLLENL 59
Query: 76 GWAVDIIDPRELSAKMLNK--NKINLNEISHDS----AIGLITRVLNIGILLTEVYLDTV 129
G+ ++ R L A+ +N+ N INLN+I ++ A LI + LNI E+Y+D
Sbjct: 60 GY----VEKRILEAEEINQLMNSINLNDIEINAFSKVAKNLIEK-LNIRDDEIEIYIDAC 114
Query: 130 GD---------AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 180
+K + + +R +IK + KAD+ YPVVS ASI+AK RD + +
Sbjct: 115 STNTKKFEDSFKDKIEDIIKERNLNIKIIAEHKADAKYPVVSAASIIAKAERDEIIDYY- 173
Query: 181 FEETAENMHRNFGSGYPGGARCLKL 205
+ ++ + GSGYP + +K
Sbjct: 174 -----KKIYGDIGSGYPSDPKTIKF 193
>sp|O74035|RNH2_PYRKO Ribonuclease HII OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 /
JCM 12380 / KOD1) GN=rnhB PE=1 SV=1
Length = 228
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 103/204 (50%), Gaps = 21/204 (10%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGPV+GPMV + + L L DSK L ++RE+LF N+ +
Sbjct: 3 IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLF-----NEIL 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVG-DAE 133
G D + EL ++ + LNE ++ + LN + + +Y D D E
Sbjct: 58 GVLDDYV-ILELPPDVIGSREGTLNEFEVEN----FAKALNSLKVKPDVIYADAADVDEE 112
Query: 134 KYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
++ +L +R VV+K KAD ++PVVS ASI+AKVTRDR + E + +
Sbjct: 113 RFARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAV------EKLKEEYGEI 166
Query: 193 GSGYPGGARCLKLSIVCNNFQSFG 216
GSGYP R + + N ++ G
Sbjct: 167 GSGYPSDPRT--RAFLENYYREHG 188
>sp|Q9V1A9|RNH2_PYRAB Ribonuclease HII OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=rnhB
PE=3 SV=1
Length = 224
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 102/192 (53%), Gaps = 19/192 (9%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVNDS 74
+ G DEAGRGPV+GP+V ++L L DSK L +RE+LF+++ KV D
Sbjct: 3 VAGADEAGRGPVIGPLVIVAAVVEEDKIRSLTKLGVKDSKQLTPAQREKLFDEIVKVLDD 62
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAE 133
++V I+ P+++ + K ++NE+ ++ + + ++ + +Y+D+ AE
Sbjct: 63 --YSVVIVSPQDIDGR-----KGSMNELEVENFVKALN---SLKVKPEVIYIDSADVKAE 112
Query: 134 KYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
++ + R K V KAD+ Y +VS ASI+AKV RDR + E + + +F
Sbjct: 113 RFAENIRSRLAYEAKVVAEHKADAKYEIVSAASILAKVIRDREI------EKLKAEYGDF 166
Query: 193 GSGYPGGARCLK 204
GSGYP R K
Sbjct: 167 GSGYPSDPRTKK 178
>sp|A1RYM0|RNH2_THEPD Ribonuclease HII OS=Thermofilum pendens (strain Hrk 5) GN=rnhB PE=3
SV=1
Length = 213
Score = 88.2 bits (217), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 96/198 (48%), Gaps = 20/198 (10%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ GIDEAGRGP+LGPMV + CP L + DSK L +R L + SV
Sbjct: 4 VAGIDEAGRGPMLGPMVVAIVVCPEEKVPLLRNMGVRDSKALSPRRRLLLSRAIP---SV 60
Query: 76 GWAVD--IIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
G +V +++P+E+ + + NLN + LI VL+ G L VY+D+ +
Sbjct: 61 GCSVKVRVVEPQEIDCAVRGECYENLNHLEAAVFAQLINEVLSEGELEV-VYMDS---PD 116
Query: 134 KYQAKLSQRFPS-----IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 188
++ +R + ++ V AD Y +V ASIVAK TRD + +
Sbjct: 117 PVPSRFEERVRALLKGQVRIVAENGADEKYTIVGAASIVAKETRDEII------NALKKT 170
Query: 189 HRNFGSGYPGGARCLKLS 206
+ +FGSGYP R L+ +
Sbjct: 171 YGDFGSGYPSDPRTLRFA 188
>sp|A2BL34|RNH2_HYPBU Ribonuclease HII OS=Hyperthermus butylicus (strain DSM 5456 / JCM
9403) GN=rnhB PE=3 SV=1
Length = 240
Score = 87.4 bits (215), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 94/183 (51%), Gaps = 19/183 (10%)
Query: 17 MGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKREELF-EDLKVNDS 74
+GIDEAGRGPV+GPMV G C + L L DSK L R +L+ E L+V +
Sbjct: 10 IGIDEAGRGPVIGPMVVVGVAVCSNDIDK-LVALGVRDSKQLTPVVRAKLYGEILRV--A 66
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ + + P L A +NLN++ ++ + +R+ + VY+D VG EK
Sbjct: 67 LHSVIVKLPPALLDA-------VNLNQLEVETFEYIASRIAGVHDSPEAVYVDAVGSPEK 119
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
A+LS R ++ + AD YP+VS ASIVAKV RD +R ++ GS
Sbjct: 120 LAARLSGRL-GVRVIAEPGADKTYPIVSAASIVAKVVRDAEIR------MLRRLYGVRGS 172
Query: 195 GYP 197
GYP
Sbjct: 173 GYP 175
>sp|Q8TPF4|RNH2_METAC Ribonuclease HII OS=Methanosarcina acetivorans (strain ATCC 35395 /
DSM 2834 / JCM 12185 / C2A) GN=rnhB PE=3 SV=1
Length = 223
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 98/196 (50%), Gaps = 23/196 (11%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAG+GPV+GPM G + S L L ADSK L +KRE+L +K +
Sbjct: 3 IAGIDEAGKGPVIGPMCIGGVKIEESRAHILKVLGVADSKKLTPKKREQLASQIK-KHAD 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
G+ + I P ++ + +++NEI + +VL + VY D AE+
Sbjct: 62 GFFILEITPAQIDE---LRKIMSMNEI----MVICFAKVLE-QLKPDIVYADAADVKAER 113
Query: 135 YQAKLSQRFP--------SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE 186
+ L +++ I+ + +AD++YPVVS ASI+AKV RD + EE +
Sbjct: 114 FAENLRRQYAKTNPAHAKKIEIISMHQADAIYPVVSAASIIAKVRRDE-----LIEEIKK 168
Query: 187 NMHRNFGSGYPGGARC 202
+FGSGYP +
Sbjct: 169 EWSVDFGSGYPSDPKT 184
>sp|A6UQ18|RNH2_METVS Ribonuclease HII OS=Methanococcus vannielii (strain SB / ATCC 35089
/ DSM 1224) GN=rnhB PE=3 SV=1
Length = 244
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 93/190 (48%), Gaps = 13/190 (6%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I+G+DEAGRGPVLGPMV + + +L+ DSK L +++REE + +N+
Sbjct: 24 IILGLDEAGRGPVLGPMVISVVKVTEKDLDKINSLDLKDSKQLTKKRREEYYNI--INEC 81
Query: 75 VGWAVDIIDPRELSA--KMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
++ P ++ K N NKI L+ S S + N+ I +
Sbjct: 82 FEVQKIVLAPEKIDEYMKTSNLNKIELSAFSKLSN-HFLKEYENVKIFIDACSSSEQSFL 140
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
+++AKL + ++ + KAD Y +VS ASI+AKVTRD + + E +
Sbjct: 141 NQFKAKLINK--KVEIIAEHKADEKYKIVSAASIIAKVTRDNIIESYKEE------FGDI 192
Query: 193 GSGYPGGARC 202
GSGYPG +
Sbjct: 193 GSGYPGDPKT 202
>sp|C6A1I4|RNH2_THESM Ribonuclease HII OS=Thermococcus sibiricus (strain MM 739 / DSM
12597) GN=rnhB PE=3 SV=1
Length = 224
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 99/189 (52%), Gaps = 29/189 (15%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDEAGRGPV+GP+V + S + L DSK L +KREELFE +
Sbjct: 5 GIDEAGRGPVVGPLVIAAVVIDESKIEKFEALGVKDSKKLSPKKREELFEKI-------- 56
Query: 78 AVDIIDPR---ELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVG-DA 132
++++D ELS + ++K + +N D + +VLN + I VY+D +
Sbjct: 57 -IELVDDYFILELSPEDIDKREGTMN----DFEVENFAKVLNSLKIKPDLVYIDAADVNE 111
Query: 133 EKYQAKLSQR---FPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
E++ + ++ +P I + KADS Y V+ ASI+AKVTRD+ + E + ++
Sbjct: 112 ERFGIVVREKLSFYPKI--IAEHKADSKYIPVAAASILAKVTRDKAI------ERLKEIY 163
Query: 190 RNFGSGYPG 198
N GSGYP
Sbjct: 164 GNIGSGYPS 172
>sp|Q8PTA3|RNH2_METMA Ribonuclease HII OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM
3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=rnhB PE=3
SV=1
Length = 220
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 97/195 (49%), Gaps = 23/195 (11%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAG+GPV+GPM G + S L L ADSK L +KRE+L +K +
Sbjct: 3 IAGIDEAGKGPVIGPMCIGGVKIDESKAHILKVLGVADSKKLTPKKREQLASQIK-KHAD 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
G+ + + P ++ + +++NEI + +VL + VY D AE+
Sbjct: 62 GYFIFEVSPSQIDE---LRKIMSMNEI----MVVCFAKVLE-QLKPDIVYADAADVKAER 113
Query: 135 YQAKLSQRFP--------SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE 186
+ L +++ IK V +AD++YPVVS ASI+AKV RD + EE
Sbjct: 114 FAENLLRQYAKTSPDHAKKIKVVSMHQADAIYPVVSAASIIAKVRRDE-----LIEELKR 168
Query: 187 NMHRNFGSGYPGGAR 201
+FGSGYP +
Sbjct: 169 EWCIDFGSGYPSDPK 183
>sp|Q8U036|RNH2_PYRFU Ribonuclease HII OS=Pyrococcus furiosus (strain ATCC 43587 / DSM
3638 / JCM 8422 / Vc1) GN=rnhB PE=3 SV=1
Length = 224
Score = 83.6 bits (205), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 93/191 (48%), Gaps = 17/191 (8%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP +GP+V + + L + DSK L +R+ LF + + +
Sbjct: 3 IGGIDEAGRGPAIGPLVVATVVVDEKNIEKLRNIGVKDSKQLTPHERKNLFSQI-TSIAD 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
+ + I+ P E+ + N++ + + + L L I L +Y D DA +
Sbjct: 62 DYKIVIVSPEEIDNRSGTMNELEVEKFA------LALNSLQIKPAL--IYADAADVDANR 113
Query: 135 YQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
+ + + +R K + KAD+ YPVVS ASI+AKV RD + E + + +FG
Sbjct: 114 FASLIERRLNYKAKIIAEHKADAKYPVVSAASILAKVVRDEEI------EKLKKQYGDFG 167
Query: 194 SGYPGGARCLK 204
SGYP + K
Sbjct: 168 SGYPSDPKTKK 178
>sp|Q468N6|RNH2_METBF Ribonuclease HII OS=Methanosarcina barkeri (strain Fusaro / DSM
804) GN=rnhB PE=3 SV=1
Length = 224
Score = 83.6 bits (205), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 98/196 (50%), Gaps = 23/196 (11%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAG+GPV+GPM G + S L L ADSK L +KRE+L +K +
Sbjct: 3 IAGIDEAGKGPVIGPMCIGGVKIEESRAHILKVLGVADSKKLTPKKREQLAAQIK-KHAD 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
G+ V + P ++ + + +NEI + ++VL + +Y D +AE+
Sbjct: 62 GFFVLEVSPSQIDEL---RKIMTMNEI----MVVCFSKVLE-QLKPDLLYADAADVNAER 113
Query: 135 YQAKLSQRF--------PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE 186
+ + +++ I+ + +AD+ YPVVS ASI+AKV RD + EE +
Sbjct: 114 FATNIRKQYSKTNPDHAKEIEIISMHQADATYPVVSAASIIAKVRRDE-----LIEELKK 168
Query: 187 NMHRNFGSGYPGGARC 202
+FGSGYP +
Sbjct: 169 EWGLDFGSGYPSDPKT 184
>sp|O59351|RNH2_PYRHO Ribonuclease HII OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM
12428 / JCM 9974 / NBRC 100139 / OT-3) GN=rnhB PE=1 SV=1
Length = 220
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 96/191 (50%), Gaps = 21/191 (10%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGPV+GP+V G + L + DSK L +RE+LF L ++
Sbjct: 3 VAGVDEAGRGPVIGPLVIGVAVIDEKNIERLRDIGVKDSKQLTPGQREKLFSKL-IDILD 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ V ++ P+E+ + + N++ A + + ++ I ++Y+D+ K
Sbjct: 62 DYYVLLVTPKEIDERHHSMNELE--------AEKFVVALNSLRIKPQKIYVDSADVDPKR 113
Query: 136 QAKLSQRFPSIKF----VVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 191
A L + +K+ + KAD+ Y +VS ASI+AKVTRDR + E + +
Sbjct: 114 FASLIK--AGLKYEATVIAEHKADAKYEIVSAASIIAKVTRDREI------EKLKQKYGE 165
Query: 192 FGSGYPGGARC 202
FGSGYP R
Sbjct: 166 FGSGYPSDPRT 176
>sp|Q97W56|RNH2_SULSO Ribonuclease HII OS=Sulfolobus solfataricus (strain ATCC 35092 /
DSM 1617 / JCM 11322 / P2) GN=rnhB PE=3 SV=1
Length = 212
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 97/188 (51%), Gaps = 18/188 (9%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+GIDEAGRG ++GPM+ + + + L + DSK L E+RE+LF D+ N
Sbjct: 3 VGIDEAGRGALIGPMIVAGVVISDTKLKFLKGIGVKDSKQLTRERREKLF-DIVANTVEA 61
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 136
+ V + P E+ + NLN++++D+ +I + + + V D VGD EK
Sbjct: 62 FTVVKVFPYEI-------DNYNLNDLTYDAVSKIILSLSSFNPEIVTV--DKVGD-EKPV 111
Query: 137 AKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGY 196
+L + K V KAD L+ S ASI+AKV RD + + + ++ +FGSGY
Sbjct: 112 IELINKL-GYKSNVVHKADVLFVEASAASIIAKVIRDNYI------DELKQVYGDFGSGY 164
Query: 197 PGGARCLK 204
P R +K
Sbjct: 165 PADPRTIK 172
>sp|Q2FP80|RNH2_METHJ Ribonuclease HII OS=Methanospirillum hungatei (strain JF-1 / DSM
864) GN=rnhB PE=3 SV=1
Length = 212
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 92/189 (48%), Gaps = 28/189 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAG+G VLGPMV + C+ L L ADSK L + RE++ D+K
Sbjct: 2 ICGVDEAGKGSVLGPMVVAAV--GCTDMDDLIALGVADSKKLSSKSREKISADIKAQFPF 59
Query: 76 GWAVDII-DPRELSAKMLNKNKINLNEI---SHDSAIGLITRVLNIGILLTEVYLDTVG- 130
+ D EL + + +NEI SH A+ I + T Y+D
Sbjct: 60 SIVIRTAHDIDEL------RRTMTMNEIVARSHAEAL--------IPLNCTCAYVDACDV 105
Query: 131 DAEKYQAKLSQ-RFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
E+Y+ +S P V KADSL+P VS ASI+AKV RDR I EE ++ +
Sbjct: 106 SEERYEETVSSFSPPDCTIVARHKADSLFPPVSAASIIAKVERDR-----IIEELSKE-Y 159
Query: 190 RNFGSGYPG 198
+ GSGYP
Sbjct: 160 GDIGSGYPS 168
>sp|Q2NEI6|RNH2_METST Ribonuclease HII OS=Methanosphaera stadtmanae (strain DSM 3091)
GN=rnhB PE=3 SV=1
Length = 212
Score = 80.5 bits (197), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 95/198 (47%), Gaps = 17/198 (8%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+GIDEAGRG V+GP+V G + + L + DSK L +KR + +K +
Sbjct: 9 ILGIDEAGRGSVIGPLVIGGVLMKKKKIRFLNRIGVKDSKQLNMKKRTIISRKIK---KI 65
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE-K 134
II P + N N INLNEI + + I +++ Y+D + E +
Sbjct: 66 AQFKTIIIPAHTIDEKRN-NDINLNEIETE-GMEEIIKIMK----PNACYIDCIDVRENR 119
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
+ K+ + P++ V KAD Y +VS ASI+AKV RD+ L E + + GS
Sbjct: 120 FHDKIQKINPNMTVVTEHKADETYKIVSAASIIAKVERDKQL------EIIRQEYGSVGS 173
Query: 195 GYPGGARCLK-LSIVCNN 211
GYP + L + NN
Sbjct: 174 GYPSDKNTINYLKTIKNN 191
>sp|Q4JA60|RNH2_SULAC Ribonuclease HII OS=Sulfolobus acidocaldarius (strain ATCC 33909 /
DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=rnhB
PE=3 SV=1
Length = 212
Score = 80.5 bits (197), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 99/194 (51%), Gaps = 26/194 (13%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
++GIDEAGRG ++GPMV + ++ + L+ + DSK L +KRE LF V
Sbjct: 2 ILVGIDEAGRGSLIGPMVVAGVAIDSNFLKFLSEIGVKDSKKLTRKKREYLF---GVILE 58
Query: 75 VGWAVDIID--PRELSAKMLNKNKINLNEISHDSAIGLI--TRVLNIGILLTEVYLDTVG 130
+A+ ++ P E+ ++ NLNEI++ + I +I V N I V +D VG
Sbjct: 59 YSYAISLVKAYPEEIDSE-------NLNEITYRAMIQIIHSMSVYNPSI----VTVDKVG 107
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
+A + ++ S + V AD Y VS ASI+AKV RD + + +
Sbjct: 108 NASAVEREIININSSPR--VENNADVKYVEVSAASIIAKVVRDNII------NELKKTYG 159
Query: 191 NFGSGYPGGARCLK 204
+FGSGYPG + ++
Sbjct: 160 DFGSGYPGDKKTVE 173
>sp|Q12YN9|RNH2_METBU Ribonuclease HII OS=Methanococcoides burtonii (strain DSM 6242)
GN=rnhB PE=3 SV=1
Length = 213
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 99/205 (48%), Gaps = 36/205 (17%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+GIDEAG+GPV+GPM G + L L ADSK L ++R L +K +
Sbjct: 3 IIGIDEAGKGPVIGPMCIGGVRIDEDKSNALKNLGVADSKKLSPKRRVHLAAQIK-KYAD 61
Query: 76 GWAVDIIDPRELSA--KMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV-GDA 132
GW V + P ++ K+++ N I VL G ++ E+ D + DA
Sbjct: 62 GWFVYEVSPNQIDELRKLMSMNDI---------------MVLAFGSVIEELPSDKIYADA 106
Query: 133 -----EKYQAKL----SQRFPSIK--FVVSKK-ADSLYPVVSGASIVAKVTRDRTLRGWI 180
E++ +L ++ P + V+SK AD L+PVVS ASI+AKV RD +
Sbjct: 107 ADVKEERFGKRLFDNYMEKHPDVSPPEVISKHGADDLFPVVSAASILAKVRRDE-----L 161
Query: 181 FEETAENMHRNFGSGYPGGARCLKL 205
E+ +M + GSGYP + K
Sbjct: 162 IEKIKVDMGVDIGSGYPSDPKTKKF 186
>sp|Q9YET5|RNH2_AERPE Ribonuclease HII OS=Aeropyrum pernix (strain ATCC 700893 / DSM
11879 / JCM 9820 / NBRC 100138 / K1) GN=rnhB PE=3 SV=2
Length = 225
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 95/186 (51%), Gaps = 19/186 (10%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
++G+DEAGRG ++G +V + L +L DSK L R EL+ ++
Sbjct: 3 IVVGVDEAGRGSLVGDLVVAGFAVEEARLGELQSLGVRDSKQLSPAARVELYREI---SG 59
Query: 75 VGW-AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVGDA 132
VG+ V+ I P E+ + N+N + + +++R+++ +G+ + V +D GD
Sbjct: 60 VGFFTVEAIRPWEIDGE-------NINILVTKAVEEIVSRIVSYLGVHPSLVVVDKYGDV 112
Query: 133 EKYQAKLSQR-FPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 191
+ + L++ +V +KADS YPVVS ASIVAKV RD L + M+
Sbjct: 113 QGLRLALTRLGIEPRSILVEEKADSRYPVVSAASIVAKVVRDARL------QVLRRMYGV 166
Query: 192 FGSGYP 197
GSGYP
Sbjct: 167 RGSGYP 172
>sp|Q974Z3|RNH2_SULTO Ribonuclease HII OS=Sulfolobus tokodaii (strain DSM 16993 / JCM
10545 / NBRC 100140 / 7) GN=rnhB PE=3 SV=1
Length = 208
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 98/189 (51%), Gaps = 18/189 (9%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
++GIDEAGRG ++GPM+ + + L + DSK L +RE+LF D+ + S
Sbjct: 2 IVVGIDEAGRGSLIGPMIVAGVAIKNDRLKFLKNIGVKDSKQLTRNRREKLF-DIICSYS 60
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
G+ + + P E+ ++ NLNE+++ + I +I ++ + + +D VG+ +
Sbjct: 61 EGFTIVKVSPEEIDSE-------NLNELTYKAMIKIIYSLVEFKPI--RISIDKVGNTKV 111
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
+ ++ + V + AD + S ASI+AKV RD + +T ++ + +FGS
Sbjct: 112 VEQEIIKLGMEPNIVTN--ADVYFVEASAASIIAKVIRDNII------DTLKSKYGDFGS 163
Query: 195 GYPGGARCL 203
GYP + +
Sbjct: 164 GYPSDPKTV 172
>sp|O29634|RNH2_ARCFU Ribonuclease HII OS=Archaeoglobus fulgidus (strain ATCC 49558 /
VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=rnhB PE=1
SV=1
Length = 205
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 91/185 (49%), Gaps = 20/185 (10%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDEAG+G V+GP+V + CS + L L DSK L + +REEL E+++
Sbjct: 4 GIDEAGKGCVIGPLVVAGV--ACSDEDRLRKLGVKDSKKLSQGRREELAEEIR--KICRT 59
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV-YLDTVGDAEKYQ 136
V + P L +M K +NEI + +I R L E+ Y+D+ +
Sbjct: 60 EVLKVSPENLDERMAAKT---INEILKECYAEIILR------LKPEIAYVDSPDVIPERL 110
Query: 137 AKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGY 196
++ + ++ V KAD YP+V+ ASI+AKV R+R + E + +FGSGY
Sbjct: 111 SRELEEITGLRVVAEHKADEKYPLVAAASIIAKVEREREI------ERLKEKFGDFGSGY 164
Query: 197 PGGAR 201
R
Sbjct: 165 ASDPR 169
>sp|B6YVT5|RNH2_THEON Ribonuclease HII OS=Thermococcus onnurineus (strain NA1) GN=rnhB
PE=3 SV=1
Length = 227
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 95/195 (48%), Gaps = 29/195 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ GIDEAGRGPVLGPMV + L L DSK L ++RE LF+++
Sbjct: 3 LAGIDEAGRGPVLGPMVIAAVVVDEGNVPKLEELGVKDSKKLTPKRRERLFDEI------ 56
Query: 76 GWAVDIIDPR---ELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT--VG 130
V ++D EL + ++ + LNE ++ + + ++ + VY+D V
Sbjct: 57 ---VQLLDDYVILELWPEEIDSREGTLNEFEVENFVKALN---SLKVKPDVVYIDAADVK 110
Query: 131 DA---EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN 187
+A E+ +AKL F + + KAD + VS ASI+AKV RDR + E ++
Sbjct: 111 EARFGEEIKAKLD--FEA-DIIAEHKADDKFVPVSAASILAKVARDRAI------EKLKD 161
Query: 188 MHRNFGSGYPGGARC 202
+ GSGYP R
Sbjct: 162 QYGEIGSGYPSDPRT 176
>sp|Q6KZK4|RNH2_PICTO Ribonuclease HII OS=Picrophilus torridus (strain ATCC 700027 / DSM
9790 / JCM 10055 / NBRC 100828) GN=rnhB PE=3 SV=1
Length = 199
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 91/193 (47%), Gaps = 27/193 (13%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNF--ADSKTLKEEKREELFEDLKVN 72
C+ GIDEAGRGPV+GPMV + C+ +NF DSK L KR +F D+
Sbjct: 2 CVCGIDEAGRGPVIGPMVMAMV---CA-----DDINFYVNDSKLLTRNKRSLIFNDVS-- 51
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ II+P E+ + K +LN + A LI + ++Y+D
Sbjct: 52 -GLYHKYYIINPAEIDDAV---KKHSLNNLEEQYAEKLILKA-----ECEKIYIDCFDVN 102
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
E ++ + + + AD +VS ASI+AKV RD + E ++++ +F
Sbjct: 103 ESRLERILKDRTGKEVICRHHADRDIKIVSAASIIAKVLRDNEI------EKLKSIYGDF 156
Query: 193 GSGYPGGARCLKL 205
GSGYP + L+
Sbjct: 157 GSGYPSDPKTLRF 169
>sp|Q8TYV5|RNH2_METKA Ribonuclease HII OS=Methanopyrus kandleri (strain AV19 / DSM 6324 /
JCM 9639 / NBRC 100938) GN=rnhB PE=3 SV=1
Length = 210
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 87/189 (46%), Gaps = 23/189 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+MGIDEAGRGPV GPMV + P ++ L L DSK L R L L ++ +
Sbjct: 4 VMGIDEAGRGPVFGPMVVAGVLAP---KRELG-LGARDSKELTRSARRRLIRALMSDERL 59
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ I+ P E+ + + K + ++ L+ R + EV LD G+
Sbjct: 60 RVDLRIVWPWEIDEEGVAKAEF-------EAIRELVRRAMP-----DEVILDKPGNYSPE 107
Query: 136 QAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
+ + P I + ++AD+ Y VVS ASIVAK RD WI E + GS
Sbjct: 108 RLRRELDLPEGINLIAEERADAKYEVVSAASIVAKTYRD-----WIV-RLLELEYGEVGS 161
Query: 195 GYPGGARCL 203
GYP R +
Sbjct: 162 GYPSDPRTV 170
>sp|Q8ZXL6|RNH2_PYRAE Ribonuclease HII OS=Pyrobaculum aerophilum (strain ATCC 51768 / IM2
/ DSM 7523 / JCM 9630 / NBRC 100827) GN=rnhB PE=3 SV=1
Length = 212
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 91/190 (47%), Gaps = 21/190 (11%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED-LKVNDS 74
I GIDEAGRGPV+GPMV + + + DSK L RE ++E L+V
Sbjct: 2 IGGIDEAGRGPVIGPMVIAIV---VGESDDMIKIGVRDSKRLSPGAREAVYEKILRVAAC 58
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
V + V I+P E+ A +++ +N E+ + + + I + E Y D
Sbjct: 59 VNYVV--IEPAEIDA-YVSRGMLNALELKYTAQL--------INLCPAEYYYVDSPDVNP 107
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
+ + F + K V++ P V+ ASIVAKV RDR ++ + +E +FGS
Sbjct: 108 KRYESGLVFATGKRVIALHKGEAVPQVAAASIVAKVVRDRLIQ-LLKKEVG-----DFGS 161
Query: 195 GYPGGARCLK 204
GYP R L+
Sbjct: 162 GYPSDPRTLQ 171
>sp|O27102|RNH2_METTH Ribonuclease HII OS=Methanothermobacter thermautotrophicus (strain
ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta
H) GN=rnhB PE=3 SV=1
Length = 206
Score = 70.9 bits (172), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 90/193 (46%), Gaps = 23/193 (11%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
++GIDEAGRGPV+GP+V + P L + DSK L E+R L ++ V
Sbjct: 3 VLGIDEAGRGPVIGPLVVAGVMIPERKFSILRKMGVKDSKKLTPERRRFLARKIRRIARV 62
Query: 76 GWAVDIIDPRELSAKMLNKNK---INLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ V I SA +++ + NLNEI + +I +++ V +
Sbjct: 63 -FTVKI------SASDIDRMRERGFNLNEIEKIAIKRIIPEAQPDRVIIDSVDV----KP 111
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR-- 190
E+ + ++ F I+ AD+ Y V+ ASI+AKV RD + E+ + +R
Sbjct: 112 ERLEEEIRSHFGEIEVTAEHGADTRYYPVAAASIIAKVERDLEI------ESIQKKNRKL 165
Query: 191 -NFGSGYPGGARC 202
+ GSGYP R
Sbjct: 166 GDIGSGYPSDPRT 178
>sp|Q8XZH7|RNH2_RALSO Ribonuclease HII OS=Ralstonia solanacearum (strain GMI1000) GN=rnhB
PE=3 SV=1
Length = 236
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 30/182 (16%)
Query: 18 GIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
G+DEAGRGP+ GP+ + P Q LA DSK L +KRE L++++ V ++
Sbjct: 31 GVDEAGRGPLAGPVTAAAVVLNPRKPIQGLA-----DSKVLTAKKREALYDEI-VEKALA 84
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 136
W V A + ++IN+ + + + V G+L V +D
Sbjct: 85 WHV-------AEATVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVD--------- 128
Query: 137 AKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNF 192
R P + F V K D+L P +S ASI+AKVTRDR L F + ++H +
Sbjct: 129 ---GNRCPQVAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPQYGFDVHAGY 185
Query: 193 GS 194
G+
Sbjct: 186 GT 187
>sp|Q819W9|RNH2_BACCR Ribonuclease HII OS=Bacillus cereus (strain ATCC 14579 / DSM 31)
GN=rnhB PE=3 SV=1
Length = 257
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 28/181 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++KV ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIKVQ-AI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + + IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQVI-------DDINIYQATKQA---MLDAVANLSCTPQHLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHRNFG 193
KL P + K D+ +S ASI+AKVTRDR ++ G + E H +G
Sbjct: 173 --KLPTPIPQTSII---KGDAKSVSISAASIIAKVTRDRMMKELGGKYPEYGFEQHMGYG 227
Query: 194 S 194
+
Sbjct: 228 T 228
>sp|B7HDW0|RNH2_BACC4 Ribonuclease HII OS=Bacillus cereus (strain B4264) GN=rnhB PE=3
SV=1
Length = 257
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 28/181 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++KV ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIKVQ-AI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + + IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQVI-------DDINIYQATKQA---MLDAVANLSCTPQHLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHRNFG 193
KL P + K D+ +S ASI+AKVTRDR ++ G + E H +G
Sbjct: 173 --KLPTPIPQTSII---KGDAKSVSISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYG 227
Query: 194 S 194
+
Sbjct: 228 T 228
>sp|Q8R9X9|RNH2_THETN Ribonuclease HII OS=Thermoanaerobacter tengcongensis (strain DSM
15242 / JCM 11007 / NBRC 100824 / MB4) GN=rnhB PE=3 SV=1
Length = 241
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 90/191 (47%), Gaps = 29/191 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP++GP+V C+ P + + DSK L EEKRE+L E +K +++
Sbjct: 59 IAGVDEAGRGPLVGPVVAACVILP----KEIFIPEINDSKKLPEEKREKLAEVIK-KEAI 113
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ + I+D RE+ ++IN +LN + + + V + +Y
Sbjct: 114 SYGIGIVDCREI-------DEIN---------------ILNATLKAMKKAIFEVKEKIEY 151
Query: 136 QAKLSQRFPS--IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
+ P IK + K DS ++ ASI+AKV RDR +R + N +N G
Sbjct: 152 LLVDAISIPDMPIKQLPIVKGDSKSISIAAASILAKVERDRIMREYHKLYPQYNFAKNKG 211
Query: 194 SGYPGGARCLK 204
G LK
Sbjct: 212 YGTKEHIEALK 222
>sp|B2UBB5|RNH2_RALPJ Ribonuclease HII OS=Ralstonia pickettii (strain 12J) GN=rnhB PE=3
SV=1
Length = 232
Score = 67.0 bits (162), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 91/202 (45%), Gaps = 27/202 (13%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G+DEAGRGP+ GP+ + + ++ + L ADSK L KRE L++++ V ++ W
Sbjct: 30 GVDEAGRGPLAGPVTAAAVVL--NPRKPIKGL--ADSKILTARKREALYDEI-VEKALAW 84
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
V A + ++IN+ + + + V +G L V +D
Sbjct: 85 HV-------AEATVEEIDRINILHATMLAMQRAVQGVAALGTLPDLVQVD---------- 127
Query: 138 KLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
R P + F V K D+L P +S ASI+AKVTRDR L E + G G
Sbjct: 128 --GNRCPQVAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHIEFPLYGFDVHAGYG 185
Query: 196 YPGGARCLKLS-IVCNNFQSFG 216
P + L + ++ +SF
Sbjct: 186 TPQHLAAIDLHGVTPHHRRSFA 207
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,869,463
Number of Sequences: 539616
Number of extensions: 3083647
Number of successful extensions: 9857
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 313
Number of HSP's that attempted gapping in prelim test: 8292
Number of HSP's gapped (non-prelim): 1027
length of query: 219
length of database: 191,569,459
effective HSP length: 113
effective length of query: 106
effective length of database: 130,592,851
effective search space: 13842842206
effective search space used: 13842842206
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)