Query 027718
Match_columns 219
No_of_seqs 114 out of 1077
Neff 6.6
Searched_HMMs 29240
Date Tue Mar 26 00:14:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027718.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027718hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kio_A Ribonuclease H2 subunit 100.0 6.1E-58 2.1E-62 404.6 19.3 204 6-209 19-224 (301)
2 1eke_A Ribonuclease HII; endon 100.0 8.7E-56 3E-60 379.2 18.0 182 15-207 2-195 (230)
3 1io2_A Ribonuclease HII; endon 100.0 8.3E-55 2.8E-59 369.3 17.4 178 15-207 2-181 (213)
4 1i39_A Ribonuclease HII, RNAse 100.0 4.4E-54 1.5E-58 367.2 18.1 177 13-208 19-196 (225)
5 1uax_A Ribonuclease HII, ribon 100.0 6.3E-54 2.2E-58 365.4 17.7 177 16-207 3-181 (220)
6 2d0b_A RNAse HIII, ribonucleas 100.0 1.3E-49 4.3E-54 354.2 18.6 188 13-207 90-281 (310)
7 2etj_A Ribonuclease HII, RNAse 100.0 7.9E-50 2.7E-54 343.8 12.5 174 10-215 19-197 (250)
8 3vn5_A RNAse HIII, ribonucleas 100.0 3E-46 1E-50 324.1 16.0 167 18-204 75-241 (257)
9 2f8e_A VPG protein; RNA-depend 60.4 2.3 7.7E-05 23.2 0.4 7 25-31 1-7 (26)
10 2kih_A Matrix protein 2; S31N, 34.2 17 0.00057 22.1 1.3 15 154-168 3-17 (43)
11 2ljb_A M2 protein, BM2 protein 27.3 25 0.00087 20.5 1.2 15 154-168 3-17 (35)
12 1jr5_A 10 kDa anti-sigma facto 27.0 16 0.00055 26.1 0.4 20 159-178 10-29 (90)
13 2kv5_A FST, putative uncharact 22.6 2 6.9E-05 25.1 -4.1 26 27-56 8-33 (33)
14 2zzd_C Thiocyanate hydrolase s 21.8 78 0.0027 26.4 3.7 43 162-204 63-114 (243)
No 1
>3kio_A Ribonuclease H2 subunit A; aicardi-goutieres syndrome, RNAse H2, protein complex, autoimmune disease, endonuclease, hydrolase, metal-binding; 2.90A {Mus musculus} PDB: 3p5j_A 3puf_A 3p56_A
Probab=100.00 E-value=6.1e-58 Score=404.56 Aligned_cols=204 Identities=48% Similarity=0.849 Sum_probs=180.9
Q ss_pred CcCCCCC-CCcEeeeecCCcCCcccceeeEEEEcccccchhhhccCcCCCCCCCHHHHHHHHHHhhhc-CcccEEEEEEC
Q 027718 6 ALPKWAS-NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN-DSVGWAVDIID 83 (219)
Q Consensus 6 ~~~~~~~-~~~~iGiDEaGrG~~~GPlvvaav~~~~~~~~~l~~~gv~DSK~Ls~~~r~~l~~~I~~~-~~~~~~v~~i~ 83 (219)
.+|.++. .++++|||||||||+|||||+|||++|.+....|..+||+|||+||+++|++|+++|++. .++.|++.+++
T Consensus 19 ~~p~~~~~~~~v~GvDEaGRGplaGPvV~aavil~~~~~~~l~~~gl~DSKkLs~~kRe~L~~~I~~~~~a~~~~v~~~s 98 (301)
T 3kio_A 19 PVPAVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGDFVGWALDVLS 98 (301)
T ss_dssp CCCTHHHHSCEEEEEEEECSSCSBSCEEEEEEEEEGGGGGGCCCCCSCC--CCCHHHHHHHHHHHHHTTTTCEEEEEEEC
T ss_pred CCchhhcCCceEEeeeCCCCCCccccceEEEEEEchhhhhhHhhcCCCccccCCHHHHHHHHHHHHhhcccceEEEEecC
Confidence 4788888 479999999999999999999999999987777888999999999999999999999973 26789999999
Q ss_pred hhhHhHHhhhhhhchHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCChHHHHHHhhccCCCcceEEeecCccchhhHHH
Q 027718 84 PRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSG 163 (219)
Q Consensus 84 p~~id~~~~~~~~~Nin~~~~~~~~~li~~~l~~~~~~~~i~iD~~~~~~~~~~~L~~~~~~~~~~~~~KaD~~~~sVAA 163 (219)
|++||+.|++....|||.++|.+++.++++++..+..++.++||+++.+++|.++|+..+|++++++++|||++|++|||
T Consensus 99 ~~eId~~m~~~~~~nlN~l~~~~~~~~i~~~~~l~~~p~~vlVD~~~~p~~y~~~L~~~~p~~~~~~~~KgDs~~~sVAA 178 (301)
T 3kio_A 99 PNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMPETYQARLQQHFPGIEVTVKAKADSLFPVVSA 178 (301)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHTTCCEEEEEEECSSCCHHHHHHHHHSSTTSEEEEETTGGGTSHHHHH
T ss_pred HHHHHHHhhhcccccHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCChHHHHHHHhhcCCCCceEEEeccchhhhHHHH
Confidence 99999988766678999999999999999988777788899999999999999999888899999999999999999999
Q ss_pred HhHHhHHHHHHHHHHhhHhcccccccCCCccccCCchhhhhhhhhh
Q 027718 164 ASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGGARCLKLSIVC 209 (219)
Q Consensus 164 ASIlAKv~RD~~m~~l~~~~p~y~~~~~~GsGYpsd~~t~~~~~~~ 209 (219)
|||||||+||++|++|+..........++||||||||+|++|++..
T Consensus 179 ASIlAKV~RD~~M~~~~f~e~l~~~~~~~GsGYPSDp~T~~~L~~~ 224 (301)
T 3kio_A 179 ASIFAKVARDKAVKNWQFVENLQDLDSDYGSGYPNDPKTKAWLRKH 224 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCCCSSSTTSHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHhhCCCCCCcCCCCHHHHHHHHHc
Confidence 9999999999999988644333334568999999999999999875
No 2
>1eke_A Ribonuclease HII; endonuclease, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: MES; 2.00A {Methanocaldococcus jannaschii} SCOP: c.55.3.1
Probab=100.00 E-value=8.7e-56 Score=379.24 Aligned_cols=182 Identities=34% Similarity=0.492 Sum_probs=159.9
Q ss_pred cEeeeecCCcCCcccceeeEEEEcccccchhhhccCcCCCCCCCHHHHHHHHHHhhhcCcccEEEEEEChhhHhHHhhhh
Q 027718 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNK 94 (219)
Q Consensus 15 ~~iGiDEaGrG~~~GPlvvaav~~~~~~~~~l~~~gv~DSK~Ls~~~r~~l~~~I~~~~~~~~~v~~i~p~~id~~~~~~ 94 (219)
.++|||||||||+|||||+|||+++.+....|..+||+|||+||+++|++|+++|++. + .|++.+++|++||+.|.
T Consensus 2 ~i~GvDEaGRGplaGPvv~aavil~~~~~~~l~~~gv~DSK~Ls~~~Re~L~~~I~~~-~-~~~v~~~~~~eId~~~~-- 77 (230)
T 1eke_A 2 IIIGIDEAGRGPVLGPMVVCAFAIEKEREEELKKLGVKDSKELTKNKRAYLKKLLENL-G-YVEKRILEAEEINQLMN-- 77 (230)
T ss_dssp EEEEEEEECSSCSBSCEEEEEEEEEGGGHHHHHTTTCC---CCCHHHHHHHHHHHHHH-S-EEEEEEECHHHHHHHTT--
T ss_pred CEecccCCCCCCchhhheEEEEEEchhhhhhhhhcCCCCcccCCHHHHHHHHHHHHHh-C-CEEEEEeCHHHHhcccc--
Confidence 3799999999999999999999999987777888999999999999999999999985 5 89999999999999874
Q ss_pred hhchHHHHHHHHHHHHHHHHHhc---CCCCCEEEECCCC-ChHHHHHHhhccC--------CCcceEEeecCccchhhHH
Q 027718 95 NKINLNEISHDSAIGLITRVLNI---GILLTEVYLDTVG-DAEKYQAKLSQRF--------PSIKFVVSKKADSLYPVVS 162 (219)
Q Consensus 95 ~~~Nin~~~~~~~~~li~~~l~~---~~~~~~i~iD~~~-~~~~~~~~L~~~~--------~~~~~~~~~KaD~~~~sVA 162 (219)
..|||++++.+|.++++++... +..++.++||+++ ++++|.++|+..+ |..++++++|||++|++||
T Consensus 78 -~~Ni~~a~~~a~~~ai~~l~~~~~~~~~~~~vliD~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~KgD~~~~~VA 156 (230)
T 1eke_A 78 -SINLNDIEINAFSKVAKNLIEKLNIRDDEIEIYIDACSTNTKKFEDSFKDKIEDIIKERNLNIKIIAEHKADAKYPVVS 156 (230)
T ss_dssp -TSCHHHHHHHHHHHHHHHHHHHTTCCSSEEEEEEECCSSCHHHHHHHHHHHHHHHHTTTTCEEEEEEETTGGGTCHHHH
T ss_pred -ccCHHHHHHHHHHHHHHHHhhhhccCCCCCEEEECCCCCChHHHHHHHhhhhcccccccCCCCceEEEECcccccHHHH
Confidence 6799999999999999988764 4457899999998 6778877776533 3467889999999999999
Q ss_pred HHhHHhHHHHHHHHHHhhHhcccccccCCCccccCCchhhhhhhh
Q 027718 163 GASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGGARCLKLSI 207 (219)
Q Consensus 163 AASIlAKv~RD~~m~~l~~~~p~y~~~~~~GsGYpsd~~t~~~~~ 207 (219)
||||||||+||++|++|++.|| ++|+|||||++|++|.+
T Consensus 157 AASIlAKv~RD~~m~~l~~~yp------~~gkGY~td~~t~~~l~ 195 (230)
T 1eke_A 157 AASIIAKAERDEIIDYYKKIYG------DIGSGYPSDPKTIKFLE 195 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS------CCTTSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcC------CCCCcCCchHHHHHHHH
Confidence 9999999999999999999987 45699999999999987
No 3
>1io2_A Ribonuclease HII; endonuclease, hydrolase; 2.00A {Thermococcus kodakarensis} SCOP: c.55.3.1 PDB: 2dfh_A 2dff_A 2dfe_A 1x1p_A
Probab=100.00 E-value=8.3e-55 Score=369.26 Aligned_cols=178 Identities=34% Similarity=0.512 Sum_probs=159.7
Q ss_pred cEeeeecCCcCCcccceeeEEEEcccccchhhhccCcCCCCCCCHHHHHHHHHHhhhcCcccEEEEEEChhhHhHHhhhh
Q 027718 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNK 94 (219)
Q Consensus 15 ~~iGiDEaGrG~~~GPlvvaav~~~~~~~~~l~~~gv~DSK~Ls~~~r~~l~~~I~~~~~~~~~v~~i~p~~id~~~~~~ 94 (219)
.++|||||||||+|||||+|||+++.+....|..+|++|||+||+++|++|+++|++. ++.|++.+++|++||+.
T Consensus 2 ~i~GvDEaGRGplaGPvv~aavil~~~~~~~l~~~gv~DSK~Ls~~~Re~L~~~I~~~-a~~~~v~~~~~~eId~~---- 76 (213)
T 1io2_A 2 KIAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGV-LDDYVILELPPDVIGSR---- 76 (213)
T ss_dssp EEEEEEEECSSCSBSCEEEEEEEEEGGGHHHHHHTTGGGCTTCCHHHHHHHHHHHHTT-CSEEEEEEECHHHHHTC----
T ss_pred CEeccCCCCCCCccchheEEEEEEChhhhhhhhhcCCCCcccCCHHHHHHHHHHHHHh-CceEEEEEECHHHHcch----
Confidence 3799999999999999999999999987777788999999999999999999999985 67899999999999853
Q ss_pred hhchHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCC-ChHHHHHHhhccCC-CcceEEeecCccchhhHHHHhHHhHHHH
Q 027718 95 NKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTR 172 (219)
Q Consensus 95 ~~~Nin~~~~~~~~~li~~~l~~~~~~~~i~iD~~~-~~~~~~~~L~~~~~-~~~~~~~~KaD~~~~sVAAASIlAKv~R 172 (219)
..|||++++.+|.++++++.. .++.++||+++ ++++|.++|+..++ ..++++++|||++|++||||||||||+|
T Consensus 77 -~~Ni~~a~~~a~~~ai~~l~~---~p~~vlvD~~~~~~~~~~~~l~~~~~~~~~~~~~~KgD~~~~~VAAASIlAKv~R 152 (213)
T 1io2_A 77 -EGTLNEFEVENFAKALNSLKV---KPDVIYADAADVDEERFARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTR 152 (213)
T ss_dssp -SSCHHHHHHHHHHHHHHHCSS---CCSEEEEECCSSCHHHHHHHHHHTCSSCCEEEEETTHHHHCHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHHHhccc---cCCEEEECCCCCCHHHHHHHHhhccCCCCceEEEeCcccccHHHHHHHHHHHHHH
Confidence 259999999999988887633 46799999998 67889888887654 5788899999999999999999999999
Q ss_pred HHHHHHhhHhcccccccCCCccccCCchhhhhhhh
Q 027718 173 DRTLRGWIFEETAENMHRNFGSGYPGGARCLKLSI 207 (219)
Q Consensus 173 D~~m~~l~~~~p~y~~~~~~GsGYpsd~~t~~~~~ 207 (219)
|++|++|++.|| ++|+|||||++|++|.+
T Consensus 153 D~~m~~l~~~y~------~~g~GY~td~~t~~~l~ 181 (213)
T 1io2_A 153 DRAVEKLKEEYG------EIGSGYPSDPRTRAFLE 181 (213)
T ss_dssp HHHHHHHHHHHS------CCCSSCTTSHHHHHHHH
T ss_pred HHHHHHHHHHcC------CCCCcCCchHHHHHHHH
Confidence 999999999997 45699999999999987
No 4
>1i39_A Ribonuclease HII, RNAse HII; mixed beta sheet, helix-loop-helix, hydrolase; 1.95A {Archaeoglobus fulgidus} SCOP: c.55.3.1 PDB: 1i3a_A 3p83_D*
Probab=100.00 E-value=4.4e-54 Score=367.21 Aligned_cols=177 Identities=32% Similarity=0.473 Sum_probs=156.6
Q ss_pred CCcEeeeecCCcCCcccceeeEEEEcccccchhhhccCcCCCCCCCHHHHHHHHHHhhhcCcccEEEEEEChhhHhHHhh
Q 027718 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKML 92 (219)
Q Consensus 13 ~~~~iGiDEaGrG~~~GPlvvaav~~~~~~~~~l~~~gv~DSK~Ls~~~r~~l~~~I~~~~~~~~~v~~i~p~~id~~~~ 92 (219)
..+++|||||||||+|||||+|||++|.+. .|..+||+|||+||+++|++|+++|++. +. |++.+++|++||+.|
T Consensus 19 ~~~i~GvDEaGRGplaGPvV~aavil~~~~--~l~~~gv~DSKkLs~~kRe~L~~~I~~~-a~-~~v~~~s~~eID~~~- 93 (225)
T 1i39_A 19 SHMKAGIDEAGKGCVIGPLVVAGVACSDED--RLRKLGVKDSKKLSQGRREELAEEIRKI-CR-TEVLKVSPENLDERM- 93 (225)
T ss_dssp --CEEEEEEECTTCSBSCEEEEEEEESCHH--HHHHTTCTTCTTCCHHHHHHHHHHHHHH-EE-EEEEEECHHHHHHHT-
T ss_pred CeEEEEecCCCCcCchhhhEEEEEEEcchh--hcccCCCCcCCcCCHHHHHHHHHHHHHh-CC-EEEEEECHHHHhhhc-
Confidence 367999999999999999999999999864 5567899999999999999999999985 45 999999999999987
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCC-ChHHHHHHhhccCCCcceEEeecCccchhhHHHHhHHhHHH
Q 027718 93 NKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVT 171 (219)
Q Consensus 93 ~~~~~Nin~~~~~~~~~li~~~l~~~~~~~~i~iD~~~-~~~~~~~~L~~~~~~~~~~~~~KaD~~~~sVAAASIlAKv~ 171 (219)
...|||++++.+|.++++++. ++.++||+++ ++++|.++|+..++ .++++++|||+++++||||||||||+
T Consensus 94 --~~~Ni~~a~~~am~~ai~~l~-----~~~vlvD~~~~~~~~~~~~l~~~~~-~~~~~~~KgD~~~~~VAAASIlAKv~ 165 (225)
T 1i39_A 94 --AAKTINEILKECYAEIILRLK-----PEIAYVDSPDVIPERLSRELEEITG-LRVVAEHKADEKYPLVAAASIIAKVE 165 (225)
T ss_dssp --TTSCHHHHHHHHHHHHHHHHC-----CSEEEEEESSSCCHHHHHHHHHHHC-SEEEEEETGGGTCHHHHHHHHHHHHH
T ss_pred --ccccHHHHHHHHHHHHHHhCC-----CCEEEECCCCCChHHHHHHhhhcCC-CceEEEecccccchHHHHHHHHHHHH
Confidence 467999999999999988763 3789999998 67888888865444 67889999999999999999999999
Q ss_pred HHHHHHHhhHhcccccccCCCccccCCchhhhhhhhh
Q 027718 172 RDRTLRGWIFEETAENMHRNFGSGYPGGARCLKLSIV 208 (219)
Q Consensus 172 RD~~m~~l~~~~p~y~~~~~~GsGYpsd~~t~~~~~~ 208 (219)
||++|++|++.|| ++|+|||||++|++|.+.
T Consensus 166 RD~~m~~l~~~yp------~~gkGY~tD~~t~~hl~~ 196 (225)
T 1i39_A 166 REREIERLKEKFG------DFGSGYASDPRTREVLKE 196 (225)
T ss_dssp HHHHHHHHHHHHC------CCCSSSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHCC------CCCCcCCChHHHHHHHHH
Confidence 9999999999997 456999999999999884
No 5
>1uax_A Ribonuclease HII, ribonuclease H2; RNA*DNA hybrid ribonucleotidohydrolase, hydrolase; 2.00A {Pyrococcus horikoshii} SCOP: c.55.3.1
Probab=100.00 E-value=6.3e-54 Score=365.37 Aligned_cols=177 Identities=31% Similarity=0.527 Sum_probs=158.0
Q ss_pred EeeeecCCcCCcccceeeEEEEcccccchhhhccCcCCCCCCCHHHHHHHHHHhhhcCcccEEEEEEChhhHhHHhhhhh
Q 027718 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKN 95 (219)
Q Consensus 16 ~iGiDEaGrG~~~GPlvvaav~~~~~~~~~l~~~gv~DSK~Ls~~~r~~l~~~I~~~~~~~~~v~~i~p~~id~~~~~~~ 95 (219)
++|||||||||+|||||+|||++|.+....|..+|++|||+||+++|++|+++|++. +..|++.+++|++||+.
T Consensus 3 i~GvDEaGRGplaGPvv~aavil~~~~~~~l~~~gl~DSK~Ls~~~Re~L~~~I~~~-a~~~~v~~~~~~eId~~----- 76 (220)
T 1uax_A 3 VAGVDEAGRGPVIGPLVIGVAVIDEKNIERLRDIGVKDSKQLTPGQREKLFSKLIDI-LDDYYVLLVTPKEIDER----- 76 (220)
T ss_dssp EEEEEEECSSCSBSCEEEEEEEEEGGGHHHHHHHTGGGSTTSCHHHHHHHHHHHHHH-SSEEEEEEECHHHHHTC-----
T ss_pred EEeecCCCCCCchhhhEEEEEEEchhhhhhhhhcCCCCcccCCHHHHHHHHHHHHHh-CceEEEEEECHHHHcCh-----
Confidence 789999999999999999999999987777778899999999999999999999985 67899999999999853
Q ss_pred hchHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCC-ChHHHHHHhhccCC-CcceEEeecCccchhhHHHHhHHhHHHHH
Q 027718 96 KINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRD 173 (219)
Q Consensus 96 ~~Nin~~~~~~~~~li~~~l~~~~~~~~i~iD~~~-~~~~~~~~L~~~~~-~~~~~~~~KaD~~~~sVAAASIlAKv~RD 173 (219)
..|||++++.+|.++++++. ..++.++||+++ ++++|.++|+..++ ..++++++|||++|++||||||||||+||
T Consensus 77 ~~Ni~~a~~~am~~ai~~l~---~~~~~vlvD~~~~~~~~~~~~l~~~~~~~~~~~~~~KgD~~~~~VAAASIlAKv~RD 153 (220)
T 1uax_A 77 HHSMNELEAEKFVVALNSLR---IKPQKIYVDSADVDPKRFASLIKAGLKYEATVIAEHKADAKYEIVSAASIIAKVTRD 153 (220)
T ss_dssp SSCHHHHHHHHHHHHHHTCS---SCCSEEEEECTTSCHHHHHHHHHHHCSSCCEEEEETTHHHHCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcC---CCCCEEEECCCCCChHHHHHHhhhccCCCCceEEEeccchhhHHHHHHHHHHHHHHH
Confidence 25999999999988887652 346789999998 67888888876553 57888999999999999999999999999
Q ss_pred HHHHHhhHhcccccccCCCccccCCchhhhhhhh
Q 027718 174 RTLRGWIFEETAENMHRNFGSGYPGGARCLKLSI 207 (219)
Q Consensus 174 ~~m~~l~~~~p~y~~~~~~GsGYpsd~~t~~~~~ 207 (219)
++|++|++.|| ++|+|||||++|++|.+
T Consensus 154 ~~m~~l~~~yp------~~gkGY~td~~t~~~l~ 181 (220)
T 1uax_A 154 REIEKLKQKYG------EFGSGYPSDPRTKEWLE 181 (220)
T ss_dssp HHHHHHHHHHC------CCTTSCTTCHHHHHHHH
T ss_pred HHHHHHHHHcC------CCCCcCCchHHHHHHHH
Confidence 99999999997 45699999999999987
No 6
>2d0b_A RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hydrolase; 2.10A {Geobacillus stearothermophilus} PDB: 2d0a_A 2d0c_A 3asm_A
Probab=100.00 E-value=1.3e-49 Score=354.15 Aligned_cols=188 Identities=21% Similarity=0.250 Sum_probs=160.8
Q ss_pred CCcEeeeecCCcCCcccceeeEEEEcccccchhhhccCcCCCCCCCHHHHHHHHHHhhhcCcccEEEEEEChhhHhHHhh
Q 027718 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKML 92 (219)
Q Consensus 13 ~~~~iGiDEaGrG~~~GPlvvaav~~~~~~~~~l~~~gv~DSK~Ls~~~r~~l~~~I~~~~~~~~~v~~i~p~~id~~~~ 92 (219)
...++|||||||||+|||||+|||++|.+..+.|..+||+|||+||+++|++|+++|++. +.|++.+++|++||+++.
T Consensus 90 ~~~i~GvDEaGRGplaGPvV~aavil~~~~~~~l~~~gl~DSKkLs~~kRe~L~~~I~~~--~~~~v~~~s~~eId~l~a 167 (310)
T 2d0b_A 90 SLSAIGSDEVGTGDYFGPIVVAAAYVDRPHIAKIAALGVKDSKQLNDEAIKRIAPAIMET--VPHAVTVLDNPQYNRWQR 167 (310)
T ss_dssp TSCEEEEEEECTTCSBSCEEEEEEEECGGGHHHHHHTCCTTGGGCCHHHHHHHHHHHHHH--SCEEEEEECHHHHHHHHH
T ss_pred CceEEeecCCCCCCchhhhEEEEEEEchhhhhhhhhcCCCcCCcCCHHHHHHHHHHHHHh--cCeEEEEECHHHHhHHHh
Confidence 356899999999999999999999999987766778899999999999999999999985 489999999999998743
Q ss_pred h-hhhchHHHHHHHHHH-HHHHHHHhcCCCCCEEEECCCCChHHHHHHhhc--cCCCcceEEeecCccchhhHHHHhHHh
Q 027718 93 N-KNKINLNEISHDSAI-GLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQ--RFPSIKFVVSKKADSLYPVVSGASIVA 168 (219)
Q Consensus 93 ~-~~~~Nin~~~~~~~~-~li~~~l~~~~~~~~i~iD~~~~~~~~~~~L~~--~~~~~~~~~~~KaD~~~~sVAAASIlA 168 (219)
. .+..||+.++|+.++ ++++.+ . +..++.++||+++.+++|.++|+. .++..++++++|||++|++||||||||
T Consensus 168 ~~i~~~~l~~~~~~~ai~~~i~~L-~-~~~p~~vliD~~~~~~~~~~~L~~~~~~~~~~~~~~~KgD~~~~~VAAASIlA 245 (310)
T 2d0b_A 168 SGMPQTKMKALLHNRTLVKLVDAI-A-PAEPEAIIIDEFLKRDSYFRYLSDEDRIIRERVHCLPKAESVHVSVAAASIIA 245 (310)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHH-T-TCCCSEEEEECSSCHHHHHHHTTTCSSCCCTTEEEETTGGGTCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHhc-c-cCCCCEEEECCCCChHHHHHHHhhccccCCCceEEEeccccccHHHHHHHHHH
Confidence 1 234466776766554 333433 2 357889999999999999988874 345678889999999999999999999
Q ss_pred HHHHHHHHHHhhHhcccccccCCCccccCCchhhhhhhh
Q 027718 169 KVTRDRTLRGWIFEETAENMHRNFGSGYPGGARCLKLSI 207 (219)
Q Consensus 169 Kv~RD~~m~~l~~~~p~y~~~~~~GsGYpsd~~t~~~~~ 207 (219)
||++|++|+++||+|+|+.|+|+|||+|..+++|.+
T Consensus 246 ---RD~~m~~l~~~~p~Yg~~~~kGygt~~h~~a~~~L~ 281 (310)
T 2d0b_A 246 ---RYVFLEEMEQLSRAVGLLLPKGAGAIVDEAAARIIR 281 (310)
T ss_dssp ---HHHHHHHHHHHHHHHTSCCCSSSSHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhCcccCCCCCcCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999877765
No 7
>2etj_A Ribonuclease HII, RNAse HII; TM0915, ribonuclease HII (EC 3.1.26.4) (RNAse HII), structur genomics, joint center for structural genomics; 1.74A {Thermotoga maritima} SCOP: c.55.3.1 PDB: 3o3g_A* 3o3f_A* 3o3h_A*
Probab=100.00 E-value=7.9e-50 Score=343.83 Aligned_cols=174 Identities=25% Similarity=0.341 Sum_probs=135.5
Q ss_pred CCCC-CcEeeeecCCcCCcccceeeEEEEcccccchhhhccCcCCCCCCCHHHHHHHHHHhhhcCcccEEEEEEChhhHh
Q 027718 10 WASN-PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELS 88 (219)
Q Consensus 10 ~~~~-~~~iGiDEaGrG~~~GPlvvaav~~~~~~~~~l~~~gv~DSK~Ls~~~r~~l~~~I~~~~~~~~~v~~i~p~~id 88 (219)
|..+ .+++|||||||||+|||||+|||++|.+ .+|++|||+||+++|++|+++|++. ++. ++.+++|++||
T Consensus 19 ~~~g~~~i~GvDEAGRGplaGPvV~AAVil~~~------~~Gl~DSKkLs~~kRe~L~~~I~~~-a~~-~v~~~sp~eID 90 (250)
T 2etj_A 19 YKKEFGIVAGVDEAGRGCLAGPVVAAAVVLEKE------IEGINDSKQLSPAKRERLLDEIMEK-AAV-GIGIASPEEID 90 (250)
T ss_dssp GTTTSSSEEEEEEECTTCSBSCEEEEEEEECSC------CC----------CHHHHHHHHHHHH-EEE-EEEEECHHHHH
T ss_pred HhCCCceEEEecCCCCCCchhhheEEEEEEcCC------ccCCCccccCCHHHHHHHHHHHHHh-hCC-eEEEECHHHHC
Confidence 4443 6799999999999999999999999986 4799999999999999999999985 566 99999999997
Q ss_pred HHhhhhhhchHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCChHHHHHHhhccCCCcceEEeecCccchhhHHHHhHHh
Q 027718 89 AKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVA 168 (219)
Q Consensus 89 ~~~~~~~~~Nin~~~~~~~~~li~~~l~~~~~~~~i~iD~~~~~~~~~~~L~~~~~~~~~~~~~KaD~~~~sVAAASIlA 168 (219)
+ .|||+++..++.+++..+ +.+++.++||+++.+ + .++.++++|||++|++||||||||
T Consensus 91 ~-------~NI~~at~~Am~rAi~~L---~~~p~~vlVDg~~~~--l---------~~~~~~ivKgD~~~~sVAAASIlA 149 (250)
T 2etj_A 91 L-------YNIFNATKLAMNRALENL---SVKPSFVLVDGKGIE--L---------SVPGTCLVKGDQKSKLIGAASIVA 149 (250)
T ss_dssp H-------HCHHHHHHHHHHHHHHHS---SSCCSEEEEESSSCC--C---------SSCEEEETTHHHHCHHHHHHHHHH
T ss_pred H-------HhHHHHHHHHHHHHHHhc---CCCCCEEEECCCCCC--C---------CCceEEEecccccchhHHHHHHHH
Confidence 4 699999888877666543 456789999998754 1 245677899999999999999999
Q ss_pred HHHHHHHHHHhhHhcccccccCCCccccCCchhhhhh----hhhhhhhccc
Q 027718 169 KVTRDRTLRGWIFEETAENMHRNFGSGYPGGARCLKL----SIVCNNFQSF 215 (219)
Q Consensus 169 Kv~RD~~m~~l~~~~p~y~~~~~~GsGYpsd~~t~~~----~~~~~~~~~~ 215 (219)
||+||++|++|++.||+|+|+.| +||||..| ++| .++..++++|
T Consensus 150 KV~RD~~M~~l~~~yp~Ygf~~~--kGY~T~~h-~~al~~~G~~~~HR~Sf 197 (250)
T 2etj_A 150 KVFRDRLMSEFHRMYPQFSFHKH--KGYATKEH-LNEIRKNGVLPIHRLSF 197 (250)
T ss_dssp HHHHHHHHHHHHHHCTTSCHHHH--TTCCCHHH-HHHHHHHCCCTTBCTTS
T ss_pred HHHHHHHHHHHHHHCcccCCcCC--CcCCcHHH-HHHHHHcCcCCeEECCc
Confidence 99999999999999999999776 89999554 444 3444555555
No 8
>3vn5_A RNAse HIII, ribonuclease HIII; hydrolase; 1.98A {Aquifex aeolicus}
Probab=100.00 E-value=3e-46 Score=324.14 Aligned_cols=167 Identities=26% Similarity=0.289 Sum_probs=145.5
Q ss_pred eeecCCcCCcccceeeEEEEcccccchhhhccCcCCCCCCCHHHHHHHHHHhhhcCcccEEEEEEChhhHhHHhhhhhhc
Q 027718 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKI 97 (219)
Q Consensus 18 GiDEaGrG~~~GPlvvaav~~~~~~~~~l~~~gv~DSK~Ls~~~r~~l~~~I~~~~~~~~~v~~i~p~~id~~~~~~~~~ 97 (219)
|||||||||+|||||+|||++|.+....|..+||+|||+||+++|++|+++|++. +.|++.+++|++||++|. +..
T Consensus 75 GvDEaGRGplaGPvv~aavil~~~~~~~L~~~gv~DSKkLs~~kRe~L~~~I~~~--~~~~v~~~s~~eID~~~~--~~~ 150 (257)
T 3vn5_A 75 GCDESGKGDIFGSLVLCCVCIPEENYLKVSSLNPRDTKRLSDKRVERLYLALKPL--VKAYCYEIKPEEYNKLYR--KFR 150 (257)
T ss_dssp EEEEESTTCSBSCEEEEEEECCGGGHHHHHHTCTTCCTTTCHHHHHHHHHHHGGG--SEEEEEEECHHHHHHHHH--HHS
T ss_pred CccCCCCCCcccccEEEEEEEchhhhhhHhhcCCCccccCCHHHHHHHHHHHHHh--cCEEEEEECHHHHhhhcc--ccc
Confidence 9999999999999999999999987777778999999999999999999999984 789999999999998763 347
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCChHHHHHHhhccCCCcceEEeecCccchhhHHHHhHHhHHHHHHHHH
Q 027718 98 NLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR 177 (219)
Q Consensus 98 Nin~~~~~~~~~li~~~l~~~~~~~~i~iD~~~~~~~~~~~L~~~~~~~~~~~~~KaD~~~~sVAAASIlAKv~RD~~m~ 177 (219)
|||.++..+|.+++..+... ..++.++||+++.+. +| ..++++++|||+ +++|||||||| ||++|+
T Consensus 151 Nin~~~~~am~~Ai~~L~~~-~~~~~vlvD~~~~~~----~l-----~~~~~~~~KgD~-~~sVAAASIlA---Rd~~m~ 216 (257)
T 3vn5_A 151 NLNKMMTHFYKLLIERVKEE-CGVSEVVVDKYQPSN----PF-----GEDVIFETEAER-NLAVAVASIFA---RYKFLQ 216 (257)
T ss_dssp SHHHHHHHHHHHHHHHHHHH-HTCSCEEECCCSSSC----CS-----CTTEEECBTTBC-CHHHHHHHHHH---HHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcc-CCCCEEEECCCCCcc----cC-----CCCeEEEEccch-hHHHHHHHHHH---HHHHHH
Confidence 99999999999998887543 125789999997543 12 246788999999 99999999999 999999
Q ss_pred HhhHhcccccccCCCccccCCchhhhh
Q 027718 178 GWIFEETAENMHRNFGSGYPGGARCLK 204 (219)
Q Consensus 178 ~l~~~~p~y~~~~~~GsGYpsd~~t~~ 204 (219)
+|+++||+|+|+.| +|||+..|..+
T Consensus 217 ~l~~~~p~Ygf~~~--kGYgT~~H~~A 241 (257)
T 3vn5_A 217 SLKEVERELGIKIP--KGTSKEVKELA 241 (257)
T ss_dssp HHHHHHHHHCSCCC--CSCCHHHHHHH
T ss_pred HHHHhCccCCCcCC--CCCCcHHHHHH
Confidence 99999999999877 78888887754
No 9
>2f8e_A VPG protein; RNA-dependent RNA polymerase , protein primer, transferase; HET: U5P; 2.90A {Foot-and-mouth disease virus - type C} PDB: 2d7s_B
Probab=60.44 E-value=2.3 Score=23.22 Aligned_cols=7 Identities=57% Similarity=1.374 Sum_probs=5.7
Q ss_pred CCcccce
Q 027718 25 GPVLGPM 31 (219)
Q Consensus 25 G~~~GPl 31 (219)
||++|||
T Consensus 1 gpyagpl 7 (26)
T 2f8e_A 1 GPYAGPL 7 (26)
T ss_pred CCcCCch
Confidence 7888887
No 10
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=34.15 E-value=17 Score=22.07 Aligned_cols=15 Identities=40% Similarity=0.554 Sum_probs=10.8
Q ss_pred CccchhhHHHHhHHh
Q 027718 154 ADSLYPVVSGASIVA 168 (219)
Q Consensus 154 aD~~~~sVAAASIlA 168 (219)
.|+.-|-|.||||+-
T Consensus 3 ~dssdplv~aa~iiG 17 (43)
T 2kih_A 3 NDSSDPLVVAANIIG 17 (43)
T ss_dssp ---CCHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHH
Confidence 366779999999997
No 11
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=27.32 E-value=25 Score=20.50 Aligned_cols=15 Identities=47% Similarity=0.583 Sum_probs=10.7
Q ss_pred CccchhhHHHHhHHh
Q 027718 154 ADSLYPVVSGASIVA 168 (219)
Q Consensus 154 aD~~~~sVAAASIlA 168 (219)
.|+.-|-|.||||+-
T Consensus 3 ~dSsDplviaA~Iig 17 (35)
T 2ljb_A 3 NDSSDPLVVAASIIG 17 (35)
T ss_dssp ---CCTHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHH
Confidence 366678999999997
No 12
>1jr5_A 10 kDa anti-sigma factor; all-alpha, helix-turn-helix, coiled-coil, transcription; NMR {Enterobacteria phage T4} SCOP: a.150.1.1 PDB: 1tkv_A 1tl6_A 1tlh_A
Probab=26.95 E-value=16 Score=26.07 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=17.0
Q ss_pred hhHHHHhHHhHHHHHHHHHH
Q 027718 159 PVVSGASIVAKVTRDRTLRG 178 (219)
Q Consensus 159 ~sVAAASIlAKv~RD~~m~~ 178 (219)
-.||-||||=|.-||.+++.
T Consensus 10 eIia~aSiLIKfg~ddIle~ 29 (90)
T 1jr5_A 10 EIITVASILIKFSREDIVEN 29 (90)
T ss_dssp HHHHHHHHHHHTTCHHHHTC
T ss_pred HHHHHHHHHHHcChHHHHHh
Confidence 46899999999999987765
No 13
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=22.63 E-value=2 Score=25.13 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=14.1
Q ss_pred cccceeeEEEEcccccchhhhccCcCCCCC
Q 027718 27 VLGPMVYGCLYCPCSYQQTLATLNFADSKT 56 (219)
Q Consensus 27 ~~GPlvvaav~~~~~~~~~l~~~gv~DSK~ 56 (219)
+.||++|+.|..--+ .+|...+ |||+
T Consensus 8 IIaPivVGvvl~L~d--~WLn~r~--~~~~ 33 (33)
T 2kv5_A 8 VIAPIFVGLVLEMIS--RVLDEED--DSRK 33 (33)
T ss_dssp HHHHHHHHHHHHHHH--HHTTCCC--CCCC
T ss_pred HHHHHHHHHHHHHHH--HHHcccc--ccCC
Confidence 368888876553222 1444333 7774
No 14
>2zzd_C Thiocyanate hydrolase subunit gamma; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dxc_C* 2dxb_C 2dd5_C* 2dd4_C*
Probab=21.82 E-value=78 Score=26.45 Aligned_cols=43 Identities=21% Similarity=0.136 Sum_probs=26.4
Q ss_pred HHHhHHhHHHHH-----HHHHHhhHhcccccccCCC----ccccCCchhhhh
Q 027718 162 SGASIVAKVTRD-----RTLRGWIFEETAENMHRNF----GSGYPGGARCLK 204 (219)
Q Consensus 162 AAASIlAKv~RD-----~~m~~l~~~~p~y~~~~~~----GsGYpsd~~t~~ 204 (219)
-.|-+|||.--| +++..=.....+.+|...- |.|||+|-....
T Consensus 63 ~GArvVArAW~DP~fk~~Ll~d~~aa~~elG~~g~~~~ptg~~~p~~~~~l~ 114 (243)
T 2zzd_C 63 PAARLVAKAWLDPEYKKLCIEDGVEASKAVGVNWVTSPPTQFGTPSDYCNLR 114 (243)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHCHHHHHGGGTCCTTTSSTTSSCCTTTCSEEE
T ss_pred CcceEEEeecCCHHHHHHHHHChHHHHHHcCCCccccccccccCCCCcceEE
Confidence 467889987544 4444323333455665544 889999976543
Done!