BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027719
         (219 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1CEE|B Chain B, Solution Structure Of Cdc42 In Complex With The Gtpase
           Binding Domain Of Wasp
          Length = 59

 Score = 33.9 bits (76), Expect = 0.080,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 19/26 (73%)

Query: 93  KEREMEIGYPTDVKHVAHIGWDGQSG 118
           K  + +IG P+  KHV+H+GWD Q+G
Sbjct: 3   KISKADIGAPSGFKHVSHVGWDPQNG 28


>pdb|2K42|A Chain A, Solution Structure Of The Gtpase Binding Domain Of Wasp In
           Complex With Espfu, An Ehec Effector
          Length = 72

 Score = 29.6 bits (65), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 15/19 (78%)

Query: 100 GYPTDVKHVAHIGWDGQSG 118
           G+ +  KHV+H+GWD Q+G
Sbjct: 1   GHMSGFKHVSHVGWDPQNG 19


>pdb|1F3M|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
 pdb|1F3M|B Chain B, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
          Length = 80

 Score = 29.3 bits (64), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 8/40 (20%)

Query: 93  KEREMEIGYPTDVKHVAHIGWDGQSGSAPSWMNEFKAAPD 132
           KER  EI  P+D +H  H+G+D  +G       EF   P+
Sbjct: 1   KERP-EISLPSDFEHTIHVGFDAVTG-------EFTGMPE 32


>pdb|1EES|B Chain B, Solution Structure Of Cdc42hs Complexed With A Peptide
           Derived From P-21 Activated Kinase, Nmr, 20 Structures
          Length = 46

 Score = 26.9 bits (58), Expect = 7.9,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 8/40 (20%)

Query: 93  KEREMEIGYPTDVKHVAHIGWDGQSGSAPSWMNEFKAAPD 132
           KER  EI  P+D +H  H+G+D  +G       EF   P+
Sbjct: 3   KERP-EISLPSDFEHTIHVGFDAVTG-------EFTGIPE 34


>pdb|1EJ5|A Chain A, Solution Structure Of The Autoinhibited Conformation Of
           Wasp
 pdb|1T84|A Chain A, Solution Structure Of The Wiskott-Aldrich Syndrome Protein
           (Wasp) Autoinhibited Core Domain Complexed With (S)-
           Wiskostatin, A Small Molecule Inhibitor
          Length = 107

 Score = 26.9 bits (58), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 9/13 (69%), Positives = 12/13 (92%)

Query: 106 KHVAHIGWDGQSG 118
           KHV+H+GWD Q+G
Sbjct: 4   KHVSHVGWDPQNG 16


>pdb|2QME|I Chain I, Crystal Structure Of Human Rac3 In Complex With Crib
           Domain Of Human P21-Activated Kinase 1 (Pak1)
          Length = 36

 Score = 26.9 bits (58), Expect = 9.4,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 7/35 (20%)

Query: 98  EIGYPTDVKHVAHIGWDGQSGSAPSWMNEFKAAPD 132
           EI  P+D +H  H+G+D  +G       EF   P+
Sbjct: 1   EISLPSDFEHTIHVGFDAVTG-------EFTGMPE 28


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.128    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,263,377
Number of Sequences: 62578
Number of extensions: 182086
Number of successful extensions: 411
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 405
Number of HSP's gapped (non-prelim): 7
length of query: 219
length of database: 14,973,337
effective HSP length: 95
effective length of query: 124
effective length of database: 9,028,427
effective search space: 1119524948
effective search space used: 1119524948
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)