Query 027719
Match_columns 219
No_of_seqs 82 out of 84
Neff 2.0
Searched_HMMs 29240
Date Tue Mar 26 00:15:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027719.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027719hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1cee_B Wiskott-aldrich syndrom 99.2 5.6E-12 1.9E-16 87.8 2.8 39 93-131 3-46 (59)
2 2qme_I CRIB domain of the seri 99.0 4.5E-11 1.5E-15 76.6 1.5 31 98-128 1-35 (36)
3 1f3m_A Serine/threonine-protei 98.9 3E-10 1E-14 83.5 1.9 37 95-131 2-42 (80)
4 2odb_B Serine/threonine-protei 98.8 1.4E-09 4.7E-14 69.2 1.2 31 98-128 1-35 (35)
5 2ov2_I Serine/threonine-protei 98.7 2.1E-09 7E-14 68.4 1.0 30 98-127 1-34 (35)
6 2lnh_A N-WAsp, neural wiskott- 98.0 1.2E-06 4.3E-11 62.6 0.6 29 103-131 2-35 (65)
7 1ej5_A WAsp, wiskott-aldrich s 97.4 4E-05 1.4E-09 59.2 1.7 29 103-131 1-34 (107)
8 4fie_A Serine/threonine-protei 96.2 0.00076 2.6E-08 60.1 0.0 36 95-130 4-43 (423)
9 3qy9_A DHPR, dihydrodipicolina 19.0 63 0.0021 26.6 2.5 51 64-123 101-153 (243)
10 2ph7_A Uncharacterized protein 18.4 34 0.0012 30.1 0.8 11 97-107 211-221 (246)
No 1
>1cee_B Wiskott-aldrich syndrome protein WAsp; CDC42 actin regulator GTPase and the GTPase binding domain of ITS effector WAsp; HET: GCP; NMR {Homo sapiens}
Probab=99.20 E-value=5.6e-12 Score=87.83 Aligned_cols=39 Identities=41% Similarity=0.742 Sum_probs=33.1
Q ss_pred cccceeeccCCccceeeeeccCCCCC-----CCchhHhhhhcCC
Q 027719 93 KEREMEIGYPTDVKHVAHIGWDGQSG-----SAPSWMNEFKAAP 131 (219)
Q Consensus 93 KE~EMeIG~PTDVKHVAHIGWDg~s~-----n~PsWm~dfks~~ 131 (219)
|-..|+||.||||+||+|||||..++ .+|.|+.+|+.++
T Consensus 3 k~~k~~Is~Ptnf~Hv~HvG~d~~~gf~~~g~pp~W~~ll~~sG 46 (59)
T 1cee_B 3 KISKADIGAPSGFKHVSHVGWDPQNGFDVNNLDPDLRSLFSRAG 46 (59)
T ss_dssp CCCTTTSCCCCCCEEEEEECCCTTTCCCCSSCCHHHHHHHTTTT
T ss_pred CCCCCcccCCCCCCCcceeccCCCCCcccCCCCHHHHHHHHHcC
Confidence 34578999999999999999998654 3999999998744
No 2
>2qme_I CRIB domain of the serine/threonine-protein kinas; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3; HET: GCP; 1.75A {Homo sapiens}
Probab=99.04 E-value=4.5e-11 Score=76.60 Aligned_cols=31 Identities=32% Similarity=0.780 Sum_probs=19.4
Q ss_pred eeccCCccceeeeeccCCCCC----CCchhHhhhh
Q 027719 98 EIGYPTDVKHVAHIGWDGQSG----SAPSWMNEFK 128 (219)
Q Consensus 98 eIG~PTDVKHVAHIGWDg~s~----n~PsWm~dfk 128 (219)
+||.||||+||+|||||..++ -+|.|++.|+
T Consensus 1 ~Is~Ptnf~H~~Hvg~d~~tG~~~glp~~W~~ll~ 35 (36)
T 2qme_I 1 EISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQ 35 (36)
T ss_dssp CBCCCEEEEEEEEECCBTTTTBCC-----------
T ss_pred CCcCCCCCCCeeEcccCCCCCcccCCCHHHHHHHh
Confidence 699999999999999998766 2899999875
No 3
>1f3m_A Serine/threonine-protein kinase PAK-alpha; kinase domain, autoinhibitory fragment, homodimer, transferase; 2.30A {Homo sapiens} SCOP: j.66.1.1 PDB: 1e0a_B* 1ees_B
Probab=98.91 E-value=3e-10 Score=83.51 Aligned_cols=37 Identities=27% Similarity=0.646 Sum_probs=26.2
Q ss_pred cceeeccCCccceeeeeccCCCCC----CCchhHhhhhcCC
Q 027719 95 REMEIGYPTDVKHVAHIGWDGQSG----SAPSWMNEFKAAP 131 (219)
Q Consensus 95 ~EMeIG~PTDVKHVAHIGWDg~s~----n~PsWm~dfks~~ 131 (219)
.+|+||.||||+||+|||||..++ -+|.|..+|+.++
T Consensus 2 ~~~~Is~Ptnf~H~~HVg~D~~tG~~~GlP~eW~~ll~~sG 42 (80)
T 1f3m_A 2 ERPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSN 42 (80)
T ss_dssp -------CCSSEEEEEEEEETTTTEEESCCHHHHHHHHTSC
T ss_pred CCCccCCCCCCCCeeecccCCCCCccCCCCHHHHHHHHHcC
Confidence 468999999999999999998776 3999999998543
No 4
>2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB, protein-protein complex, structu genomics, structural genomics consortium, SGC; HET: GCP; 2.40A {Homo sapiens}
Probab=98.77 E-value=1.4e-09 Score=69.18 Aligned_cols=31 Identities=32% Similarity=0.698 Sum_probs=27.2
Q ss_pred eeccCCccceeeeeccCCCCC----CCchhHhhhh
Q 027719 98 EIGYPTDVKHVAHIGWDGQSG----SAPSWMNEFK 128 (219)
Q Consensus 98 eIG~PTDVKHVAHIGWDg~s~----n~PsWm~dfk 128 (219)
+||.||||+||+|+|||..++ -+|.|.+.|+
T Consensus 1 ~Is~Ptnf~H~~Hvg~d~~tG~f~Glp~eW~~ll~ 35 (35)
T 2odb_B 1 EISAPQNFQHRVHTSFDPKEGKFVGLPPQWQNILD 35 (35)
T ss_dssp CBCCCEEEEEEEEEEEETTTTEEESCCHHHHHHHC
T ss_pred CCcCCCCCcCeeeeeECCCCCcccCCCHHHHHHhC
Confidence 699999999999999998776 3899998763
No 5
>2ov2_I Serine/threonine-protein kinase PAK 4; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3, signalling protein; HET: GCP; 2.10A {Homo sapiens}
Probab=98.73 E-value=2.1e-09 Score=68.38 Aligned_cols=30 Identities=27% Similarity=0.578 Sum_probs=26.3
Q ss_pred eeccCCccceeeeeccCCCCC----CCchhHhhh
Q 027719 98 EIGYPTDVKHVAHIGWDGQSG----SAPSWMNEF 127 (219)
Q Consensus 98 eIG~PTDVKHVAHIGWDg~s~----n~PsWm~df 127 (219)
+||.||||+|++|+|||..++ -+|.|.+.|
T Consensus 1 ~IS~Ptnf~H~~Hvg~d~~tg~~~Glp~eW~~ll 34 (35)
T 2ov2_I 1 EISAPSNFEHRVHTGFDQHEQKFTGLPRQWQSLI 34 (35)
T ss_dssp CBCCCEEEEEEEEEEEETTTTEEESCCGGGTTTC
T ss_pred CCcCCCCCcCeeeeeeCCCCCcccCCCHHHHHHh
Confidence 699999999999999998765 389998876
No 6
>2lnh_A N-WAsp, neural wiskott-aldrich syndrome protein; protein complex, signaling protein-protein binding complex; NMR {Homo sapiens}
Probab=97.97 E-value=1.2e-06 Score=62.56 Aligned_cols=29 Identities=31% Similarity=0.767 Sum_probs=25.4
Q ss_pred CccceeeeeccCCCCC-----CCchhHhhhhcCC
Q 027719 103 TDVKHVAHIGWDGQSG-----SAPSWMNEFKAAP 131 (219)
Q Consensus 103 TDVKHVAHIGWDg~s~-----n~PsWm~dfks~~ 131 (219)
||++||+|+|||..++ -+|.|...|+.++
T Consensus 2 tnF~Hv~HVG~D~~tGf~~~glp~eW~~ll~~sG 35 (65)
T 2lnh_A 2 SNFQHIGHVGWDPNTGFDLNNLDPELKNLFDMCG 35 (65)
T ss_dssp CCCSSCCSCCEETTTEECGGGCCTTHHHHHHHHT
T ss_pred CCCEeeeeeeeCCCCCcCCcCCCHHHHHHHHHcC
Confidence 8999999999998876 3999999998754
No 7
>1ej5_A WAsp, wiskott-aldrich syndrome protein; alpha helix, beta-hairpin turn, blood clotting; NMR {Homo sapiens} SCOP: a.68.1.1 PDB: 1t84_A* 2k42_A
Probab=97.43 E-value=4e-05 Score=59.22 Aligned_cols=29 Identities=41% Similarity=0.774 Sum_probs=24.1
Q ss_pred CccceeeeeccCCCCC-----CCchhHhhhhcCC
Q 027719 103 TDVKHVAHIGWDGQSG-----SAPSWMNEFKAAP 131 (219)
Q Consensus 103 TDVKHVAHIGWDg~s~-----n~PsWm~dfks~~ 131 (219)
||++||+|+|||..++ .+|.|...|+.++
T Consensus 1 tnF~Hv~HVG~D~~tGF~~~glppeWk~LL~~aG 34 (107)
T 1ej5_A 1 SGFKHVSHVGWDPQNGFDVNNLDPDLRSLFSRAG 34 (107)
T ss_dssp CCCCCCCCCCCBTTTBCCTTTCCHHHHHHHHHTT
T ss_pred CCCCcceecccCCCCCcCCCCCCHHHHHHHHHcC
Confidence 7999999999997544 4899999998543
No 8
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=96.22 E-value=0.00076 Score=60.12 Aligned_cols=36 Identities=22% Similarity=0.547 Sum_probs=0.0
Q ss_pred cceeeccCCccceeeeeccCCCCC----CCchhHhhhhcC
Q 027719 95 REMEIGYPTDVKHVAHIGWDGQSG----SAPSWMNEFKAA 130 (219)
Q Consensus 95 ~EMeIG~PTDVKHVAHIGWDg~s~----n~PsWm~dfks~ 130 (219)
+..||+.||||+|+.|+|.|..+| -++.|-..++..
T Consensus 4 ~~~~is~p~n~~h~~hvg~d~~tg~f~glP~~W~~ll~~~ 43 (423)
T 4fie_A 4 KRVEISAPSNFEHRVHTGFDQHEQKFTGLPRQWQSLIEES 43 (423)
T ss_dssp ----------------------------------------
T ss_pred CCCcccCCCCCCceeecCccCCCCCcccCCHHHHHHHHHh
Confidence 347899999999999999997665 388999888754
No 9
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}
Probab=18.97 E-value=63 Score=26.64 Aligned_cols=51 Identities=18% Similarity=0.177 Sum_probs=35.7
Q ss_pred hhhccCcchhhhhhhhhhhhHHHHhhhhccccceeeccCCccceeeeec--cCCCCCCCchh
Q 027719 64 RVVIRTPRMATKMKGIYKSFKYISQIFVVKEREMEIGYPTDVKHVAHIG--WDGQSGSAPSW 123 (219)
Q Consensus 64 ~~~~~kp~matkmkgl~Kg~k~iSqiF~~KE~EMeIG~PTDVKHVAHIG--WDg~s~n~PsW 123 (219)
--++-.|||+.++.=|+|-++..+++|.. -++|| -..|=- .|-||+++-.-
T Consensus 101 ~~v~~a~N~S~Gv~l~~~~~~~aa~~l~~--~dieI-------~E~HH~~K~DaPSGTA~~l 153 (243)
T 3qy9_A 101 MPVFFSANMSYGVHALTKILAAAVPLLDD--FDIEL-------TEAHHNKKVDAPSGTLEKL 153 (243)
T ss_dssp SEEEECSSCCHHHHHHHHHHHHHHHHTTT--SEEEE-------EEEECTTCCSSSCHHHHHH
T ss_pred CCEEEECCccHHHHHHHHHHHHHHHhcCC--CCEEE-------EEcCCCCCCCCCCHHHHHH
Confidence 34566899999999999999999999963 44554 122222 57888864433
No 10
>2ph7_A Uncharacterized protein AF_2093; structural genomics, southeast collaboratory for structural genomics, secsg; 2.40A {Archaeoglobus fulgidus dsm 4304}
Probab=18.44 E-value=34 Score=30.09 Aligned_cols=11 Identities=45% Similarity=0.769 Sum_probs=9.2
Q ss_pred eeeccCCccce
Q 027719 97 MEIGYPTDVKH 107 (219)
Q Consensus 97 MeIG~PTDVKH 107 (219)
==||||||++=
T Consensus 211 PFIGyp~D~~i 221 (246)
T 2ph7_A 211 PFIGYPKDFRL 221 (246)
T ss_dssp EEECCCSCGGG
T ss_pred CccCCCCCHHH
Confidence 56999999984
Done!