BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027720
(219 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B93|A Chain A, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 189
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 108/190 (56%), Gaps = 6/190 (3%)
Query: 5 SLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSNNKFTYNCDGHTFNYLVDDGFT 64
+++++ VARGT ILA++ GNF + Q L K+PS NNK TY+ + F+Y+ D
Sbjct: 3 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 62
Query: 65 YCVVAVESVGRQVPIAFLERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDH 124
Y + + R +FL VK+ F Y G +A TA+ +N EF L +++ H
Sbjct: 63 YLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKH---H 118
Query: 125 PE--EISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQ 182
E + K+ + +AQV E+KG+M+ NI+ V RGE++ELL+D+TENL + F+
Sbjct: 119 SENKSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRN 178
Query: 183 MRRKMWFQNM 192
+ R M +N+
Sbjct: 179 LARAMCMKNI 188
>pdb|4AFI|A Chain A, Complex Between Vamp7 Longin Domain And Fragment Of Delta-
Adaptin From Ap3
pdb|4AFI|B Chain B, Complex Between Vamp7 Longin Domain And Fragment Of Delta-
Adaptin From Ap3
Length = 173
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 1/116 (0%)
Query: 5 SLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSNNKFTYNCDGHTFNYLVDDGFT 64
+++++ VARGT ILA++ GNF + Q L K+PS NNK TY+ + F+Y+ D
Sbjct: 55 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 114
Query: 65 YCVVAVESVGRQVPIAFLERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQY 120
Y + + R +FL VK+ F Y G +A TA+ +N EF L +++
Sbjct: 115 YLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKH 169
>pdb|2VX8|A Chain A, Vamp7 Longin Domain Hrb Peptide Complex
pdb|2VX8|B Chain B, Vamp7 Longin Domain Hrb Peptide Complex
pdb|2VX8|C Chain C, Vamp7 Longin Domain Hrb Peptide Complex
pdb|2VX8|D Chain D, Vamp7 Longin Domain Hrb Peptide Complex
Length = 169
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Query: 5 SLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSNNKFTYNCDGHTFNYLVDDGFT 64
+++++ VARGT ILA++ GNF + Q L K+PS NNK TY+ + F+Y+ D
Sbjct: 45 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 104
Query: 65 YCVVAVESVGRQVPIAFLERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQ 119
Y + + R +FL VK+ F Y G +A TA+ +N EF L ++
Sbjct: 105 YLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLK 158
>pdb|2DMW|A Chain A, Solution Structure Of The Longin Domain Of Synaptobrevin-
Like Protein 1
Length = 131
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 62/123 (50%), Gaps = 1/123 (0%)
Query: 5 SLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSNNKFTYNCDGHTFNYLVDDGFT 64
+++++ VARGT ILA++ GNF + Q L K+PS NNK TY+ + F+Y+ D
Sbjct: 9 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 68
Query: 65 YCVVAVESVGRQVPIAFLERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDH 124
Y + + R FL +K+ F Y G +A TA +N EF L +++
Sbjct: 69 YLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTAPPYAMNSEFSSVLAAQLKHHSSG 127
Query: 125 PEE 127
P
Sbjct: 128 PSS 130
>pdb|2NUP|C Chain C, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
pdb|2NUT|C Chain C, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
Length = 196
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Query: 32 AAQCLQKL-PSSNNKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFI 90
A Q +KL S + T TF+Y+++ G Y V+ + +++ A+LE + +F
Sbjct: 38 AKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFD 97
Query: 91 KRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIE 150
+++G K T EF +++ + ID L + ++ +V+ +M+ NIE
Sbjct: 98 EQHGK-KVPTVSRPYSFIEFDTFIQKTKKLYIDSRAR-RNLGSINTELQDVQRIMVANIE 155
Query: 151 KVLDRGEKIELLVDRTENLRSQAQDFRQQG 180
+VL RGE + L + NL S ++ +RQ
Sbjct: 156 EVLQRGEALSALDSKANNLSSLSKKYRQDA 185
>pdb|2NPS|A Chain A, Crystal Structure Of The Early Endosomal Snare Complex
Length = 74
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 42/61 (68%)
Query: 130 KLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWF 189
K+ V+ QV EV VM +NI KV++RGE+++ L D++E+L A F + Q+RR+MW+
Sbjct: 9 KIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWW 68
Query: 190 Q 190
+
Sbjct: 69 R 69
>pdb|3B5N|A Chain A, Structure Of The Yeast Plasma Membrane Snare Complex
pdb|3B5N|E Chain E, Structure Of The Yeast Plasma Membrane Snare Complex
pdb|3B5N|I Chain I, Structure Of The Yeast Plasma Membrane Snare Complex
Length = 61
Score = 55.1 bits (131), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 41/60 (68%)
Query: 129 SKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMW 188
S+ A+++A++ + G+M DNI KV +RGE++ + D+ +NL AQ F++ ++R+ MW
Sbjct: 2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAMW 61
>pdb|1KIL|A Chain A, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX
Length = 66
Score = 52.0 bits (123), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 40/62 (64%)
Query: 130 KLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWF 189
+L + +AQV EV +M N++KVL+R +K+ L DR + L++ A F +++RK W+
Sbjct: 5 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 64
Query: 190 QN 191
+N
Sbjct: 65 KN 66
>pdb|2KOG|A Chain A, Lipid-Bound Synaptobrevin Solution Nmr Structure
Length = 119
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 41/63 (65%)
Query: 130 KLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWF 189
+L + +AQV EV +M N++KVL+R +K+ L DR + L++ A F +++RK W+
Sbjct: 34 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 93
Query: 190 QNM 192
+N+
Sbjct: 94 KNL 96
>pdb|3HD7|A Chain A, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3HD7|E Chain E, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3IPD|A Chain A, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
pdb|3IPD|E Chain E, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
Length = 91
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 42/65 (64%)
Query: 128 ISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKM 187
+ +L + +AQV EV +M N++KVL+R +K+ L DR + L++ A F +++RK
Sbjct: 4 MRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 63
Query: 188 WFQNM 192
W++N+
Sbjct: 64 WWKNL 68
>pdb|3KYQ|A Chain A, Lipid-Induced Conformational Switch Controls Fusion
Activity Of Longin Domain Snare Ykt6
Length = 199
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 14/125 (11%)
Query: 57 YLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFIKR-----YGGGKAATAVANGLNKEFG 111
Y+ D V+A +V LE+V ++F K+ + G AT L+
Sbjct: 70 YVRSDSLAGVVIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATIHYTALDGHLS 129
Query: 112 PKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRS 171
+Y +P E ++KV+A++ E K ++ + +E +L+RGEK++ LV ++E L +
Sbjct: 130 -------RY--QNPREADPMSKVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGT 180
Query: 172 QAQDF 176
Q++ F
Sbjct: 181 QSKAF 185
>pdb|1SFC|A Chain A, Neuronal Synaptic Fusion Complex
pdb|1SFC|E Chain E, Neuronal Synaptic Fusion Complex
pdb|1SFC|I Chain I, Neuronal Synaptic Fusion Complex
Length = 96
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 41/63 (65%)
Query: 130 KLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWF 189
+L + +AQV EV +M N++KVL+R +K+ L DR + L++ A F +++RK W+
Sbjct: 31 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 90
Query: 190 QNM 192
+N+
Sbjct: 91 KNL 93
>pdb|1L4A|A Chain A, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
From The Squid Loligo Pealei
Length = 80
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 39/62 (62%)
Query: 130 KLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWF 189
+L + +AQV EV +M N++KVL+R KI L DR + L++ A F +++RK W+
Sbjct: 16 RLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKFWW 75
Query: 190 QN 191
+N
Sbjct: 76 KN 77
>pdb|1N7S|A Chain A, High Resolution Structure Of A Truncated Neuronal Snare
Complex
Length = 63
Score = 48.5 bits (114), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 130 KLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMW 188
+L + +AQV EV +M N++KVL+R +K+ L DR + L++ A F +++RK W
Sbjct: 5 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 63
>pdb|1GL2|A Chain A, Crystal Structure Of An Endosomal Snare Core Complex
Length = 65
Score = 40.8 bits (94), Expect = 5e-04, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 37/56 (66%)
Query: 130 KLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRR 185
++ ++++V VK +M N+E++L RGE ++ L ++TE+L + ++ F+ ++ R
Sbjct: 10 RVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVAR 65
>pdb|3EGD|C Chain C, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND
BOUND To The Transport Signal Sequence Of Vesicular
Stomatitis Virus Glycoprotein
pdb|3EGX|C Chain C, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22B AND
Bound To The Transport Signal Sequence Of The Snare
Protein Bet1
Length = 157
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 3/123 (2%)
Query: 32 AAQCLQKL-PSSNNKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFI 90
A Q +KL S + T TF+Y+++ G Y V+ + +++ A+LE + +F
Sbjct: 37 AKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFD 96
Query: 91 KRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIE 150
+++ G K T EF +++ + ID L + ++ +V+ +M+ NIE
Sbjct: 97 EQH-GKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRAR-RNLGSINTELQDVQRIMVANIE 154
Query: 151 KVL 153
+VL
Sbjct: 155 EVL 157
>pdb|1ITQ|A Chain A, Human Renal Dipeptidase
pdb|1ITQ|B Chain B, Human Renal Dipeptidase
pdb|1ITU|A Chain A, Human Renal Dipeptidase Complexed With Cilastatin
pdb|1ITU|B Chain B, Human Renal Dipeptidase Complexed With Cilastatin
Length = 369
Score = 33.9 bits (76), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 88 DFIKRYGGGKAATAVANGLNKEFG--PKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVM 145
D IK G +A G +F P++ E ++ +P+ I++L + +EVKG +
Sbjct: 272 DHIKEVAGARAV-----GFGGDFDGVPRVPEGLEDVSKYPDLIAELLRRNWTEAEVKGAL 326
Query: 146 MDNIEKVLDRGEKIELLVDRTE 167
DN+ +V + E+ L E
Sbjct: 327 ADNLLRVFEAVEQASNLTQAPE 348
>pdb|1IFQ|A Chain A, Sec22b N-Terminal Domain
pdb|1IFQ|B Chain B, Sec22b N-Terminal Domain
Length = 138
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 32 AAQCLQKL-PSSNNKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFI 90
A Q +KL S + T TF+Y+++ G Y V+ + +++ A+LE + +F
Sbjct: 48 AKQLFRKLNEQSPTRCTLEAGAXTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFD 107
Query: 91 KRYG 94
+++G
Sbjct: 108 EQHG 111
>pdb|3HM0|A Chain A, Crystal Structure Of Probable Thioesterase From Bartonella
Henselae
pdb|3HM0|B Chain B, Crystal Structure Of Probable Thioesterase From Bartonella
Henselae
pdb|3HM0|C Chain C, Crystal Structure Of Probable Thioesterase From Bartonella
Henselae
pdb|3HM0|D Chain D, Crystal Structure Of Probable Thioesterase From Bartonella
Henselae
Length = 167
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 79 IAFLERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQV 138
+ F ER + +F++ G T +A+G+ E + HM+ P +I L +K ++
Sbjct: 60 LEFFERGRSEFLRDTGFNN--TLLASGVEGEKLFFVVRHMEINFSRPAQIDNLLTIKTRI 117
Query: 139 SEVKG 143
S ++G
Sbjct: 118 SRLQG 122
>pdb|3RK2|A Chain A, Truncated Snare Complex
pdb|3RK2|E Chain E, Truncated Snare Complex
pdb|3RK3|A Chain A, Truncated Snare Complex With Complexin
pdb|3RL0|A Chain A, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|E Chain E, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|I Chain I, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|M Chain M, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|Q Chain Q, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|U Chain U, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|Y Chain Y, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|CC Chain c, Truncated Snare Complex With Complexin (P1)
Length = 37
Score = 30.0 bits (66), Expect = 1.0, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 130 KLAKVKAQVSEVKGVMMDNIEKVLDRGEKI 159
+L + +AQV EV +M N++KVL+R +K+
Sbjct: 8 RLQQTQAQVDEVVDIMRVNVDKVLERDQKL 37
>pdb|2UUZ|A Chain A, Orthorhombic Crystal Form Of Gams From Bacteriophage
Lambda.
pdb|2UUZ|B Chain B, Orthorhombic Crystal Form Of Gams From Bacteriophage
Lambda.
pdb|2UV1|A Chain A, Hexagonal Crystal Form Of Gams From Bacteriophage Lambda.
pdb|2UV1|B Chain B, Hexagonal Crystal Form Of Gams From Bacteriophage Lambda
Length = 99
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 77 VPIAFLERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQYCID 123
+P E + D ++R+G K + A + EF ++ EH++Y ++
Sbjct: 40 IPQHLFESLCIDHLQRHGASKKSITRAFDDDVEFQERMAEHIRYMVE 86
>pdb|3ZYM|A Chain A, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|B Chain B, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|C Chain C, Structure Of Calm (Picalm) In Complex With Vamp8
Length = 310
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 127 EISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKI 159
+ ++ ++++V VK +M N+E++L RGE +
Sbjct: 278 HMDRVRNLQSEVEGVKNIMTQNVERILARGENL 310
>pdb|3FIE|C Chain C, Crystal Structure Of Clostridium Botulinum Neurotoxin
Serotype F Catalytic Domain With An Inhibitor (Inh1)
pdb|3FIE|D Chain D, Crystal Structure Of Clostridium Botulinum Neurotoxin
Serotype F Catalytic Domain With An Inhibitor (Inh1)
Length = 38
Score = 28.5 bits (62), Expect = 3.1, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 130 KLAKVKAQVSEVKGVMMDNIEKVLDR 155
+L + +AQV EV +M N++KVL+R
Sbjct: 10 RLQQTQAQVDEVVDIMRVNVDKVLER 35
>pdb|3GTD|A Chain A, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
Rickettsia Prowazekii
pdb|3GTD|B Chain B, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
Rickettsia Prowazekii
Length = 482
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 37 QKLPSSNNKFTYNCD-GHTFNYLVDDGFTYCVVAV------ESVGRQVPIAF-LERVKED 88
Q +P+ NN TY D ++ ++ G T+ A E G I + LER+++
Sbjct: 180 QLIPALNNLLTYLQDKSKDWDKIIKIGRTHLQDATPLTLKQEFSGYITQIEYALERIEDA 239
Query: 89 FIKRYGGGKAATAVANGLNKEFGPKLK 115
K Y + TAV G+N + G +K
Sbjct: 240 LKKVYLLAQGGTAVGTGINSKIGFDIK 266
>pdb|3FII|B Chain B, Crystal Structure Of Clostridium Botulinum Neurotoxin
Serotype F Catalytic Domain With An Inhibitor (Inh2)
Length = 33
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 130 KLAKVKAQVSEVKGVMMDNIEKVLDRG 156
+L + +AQV EV +M N++KVL+R
Sbjct: 5 RLQQTQAQVDEVVDIMRVNVDKVLERD 31
>pdb|4EQI|A Chain A, Crystal Structure Of Serratia Fonticola Carbapenemase
Sfc-1
pdb|4EQI|B Chain B, Crystal Structure Of Serratia Fonticola Carbapenemase
Sfc-1
Length = 283
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 76 QVPIAFLERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQYC 121
QV + L+R++ DF GG A+ G NK FG + E C
Sbjct: 6 QVTVDKLKRLENDF----GGRIGVYAIDTGSNKTFGYRANERFPLC 47
>pdb|4EV4|A Chain A, Crystal Structure Of Serratia Fonticola Carbapenemase
Sfc-1 E166a Mutant With The Acylenzyme Intermediate Of
Meropenem
Length = 283
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 76 QVPIAFLERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQYC 121
QV + L+R++ DF GG A+ G NK FG + E C
Sbjct: 6 QVTVDKLKRLENDF----GGRIGVYAIDTGSNKTFGYRANERFPLC 47
>pdb|4EUZ|A Chain A, Crystal Structure Of Serratia Fonticola Carbapenemase
Sfc-1 S70a- Meropenem Complex
Length = 283
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 76 QVPIAFLERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQYC 121
QV + L+R++ DF GG A+ G NK FG + E C
Sbjct: 6 QVTVDKLKRLENDF----GGRIGVYAIDTGSNKTFGYRANERFPLC 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,905,041
Number of Sequences: 62578
Number of extensions: 237423
Number of successful extensions: 804
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 776
Number of HSP's gapped (non-prelim): 32
length of query: 219
length of database: 14,973,337
effective HSP length: 95
effective length of query: 124
effective length of database: 9,028,427
effective search space: 1119524948
effective search space used: 1119524948
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)