Query 027720
Match_columns 219
No_of_seqs 139 out of 1010
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 14:10:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027720.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027720hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0859 Synaptobrevin/VAMP-lik 100.0 4.4E-70 9.6E-75 415.3 19.0 214 4-219 1-215 (217)
2 KOG0862 Synaptobrevin/VAMP-lik 100.0 9.3E-35 2E-39 226.3 21.2 193 5-199 1-204 (216)
3 KOG0861 SNARE protein YKT6, sy 100.0 1.4E-31 3E-36 200.7 15.4 152 29-185 41-193 (198)
4 PF00957 Synaptobrevin: Synapt 100.0 2.3E-29 5E-34 175.7 11.0 88 128-215 2-89 (89)
5 KOG0860 Synaptobrevin/VAMP-lik 100.0 3.2E-29 6.9E-34 177.2 11.1 87 128-214 28-114 (116)
6 COG5143 SNC1 Synaptobrevin/VAM 99.9 4.3E-23 9.4E-28 158.9 14.2 180 6-190 3-190 (190)
7 PF13774 Longin: Regulated-SNA 99.8 2.1E-19 4.6E-24 123.7 11.4 81 31-112 1-82 (83)
8 COG5143 SNC1 Synaptobrevin/VAM 98.0 4.8E-05 1E-09 59.3 8.0 76 130-205 95-170 (190)
9 PF00957 Synaptobrevin: Synapt 96.8 0.025 5.5E-07 38.9 10.0 77 129-209 10-86 (89)
10 PF03908 Sec20: Sec20; InterP 96.7 0.053 1.1E-06 37.6 10.6 75 133-210 5-89 (92)
11 KOG0811 SNARE protein PEP12/VA 96.3 0.034 7.3E-07 46.2 9.0 46 129-174 180-225 (269)
12 KOG0810 SNARE protein Syntaxin 95.5 0.11 2.4E-06 43.9 8.9 76 129-206 206-284 (297)
13 COG5074 t-SNARE complex subuni 95.2 0.12 2.7E-06 41.6 7.7 76 129-204 185-263 (280)
14 PF03908 Sec20: Sec20; InterP 94.9 0.78 1.7E-05 31.7 10.3 39 130-168 9-47 (92)
15 PF04086 SRP-alpha_N: Signal r 94.0 0.099 2.1E-06 43.7 5.0 88 29-118 5-100 (279)
16 KOG0781 Signal recognition par 93.3 0.36 7.7E-06 43.3 7.2 86 7-94 4-95 (587)
17 PF09753 Use1: Membrane fusion 92.5 1.4 3E-05 36.4 9.4 38 169-208 204-244 (251)
18 PF04099 Sybindin: Sybindin-li 89.7 5.6 0.00012 29.8 9.6 58 33-91 46-113 (142)
19 PF10779 XhlA: Haemolysin XhlA 89.5 4.3 9.3E-05 26.6 8.7 51 156-209 19-69 (71)
20 KOG0860 Synaptobrevin/VAMP-lik 89.2 6.6 0.00014 28.3 9.8 28 148-178 58-85 (116)
21 COG5074 t-SNARE complex subuni 88.1 2.6 5.6E-05 34.2 6.9 80 130-213 196-275 (280)
22 PF05478 Prominin: Prominin; 87.9 5.8 0.00013 38.4 10.5 10 206-215 429-438 (806)
23 KOG1983 Tomosyn and related SN 86.9 0.56 1.2E-05 46.2 3.1 47 144-190 942-988 (993)
24 KOG0938 Adaptor complexes medi 86.1 21 0.00047 30.8 11.9 90 1-94 1-93 (446)
25 PTZ00478 Sec superfamily; Prov 84.5 4.9 0.00011 27.1 5.8 57 152-208 9-65 (81)
26 PF03904 DUF334: Domain of unk 83.8 22 0.00047 28.9 11.3 26 128-156 96-121 (230)
27 PF09426 Nyv1_N: Vacuolar R-SN 82.9 3.5 7.6E-05 30.4 5.0 53 35-87 50-110 (141)
28 PF06789 UPF0258: Uncharacteri 82.3 0.85 1.8E-05 34.4 1.6 36 176-214 120-155 (159)
29 PRK09400 secE preprotein trans 82.0 7.7 0.00017 24.7 5.7 50 160-209 4-53 (61)
30 PRK10884 SH3 domain-containing 81.1 27 0.00058 28.0 11.0 20 155-174 130-149 (206)
31 COG5325 t-SNARE complex subuni 80.7 16 0.00035 30.5 8.6 79 129-209 195-277 (283)
32 KOG3385 V-SNARE [Intracellular 80.0 9 0.00019 27.6 6.1 76 129-209 36-115 (118)
33 cd07912 Tweety_N N-terminal do 79.7 27 0.00058 31.2 10.3 39 108-149 105-143 (418)
34 PF04799 Fzo_mitofusin: fzo-li 77.7 14 0.0003 28.7 7.0 51 129-179 109-159 (171)
35 KOG3202 SNARE protein TLG1/Syn 77.7 27 0.00058 28.6 9.0 22 132-153 140-161 (235)
36 PF11166 DUF2951: Protein of u 77.4 21 0.00046 24.7 8.5 27 129-156 28-54 (98)
37 PF13800 Sigma_reg_N: Sigma fa 77.2 5.5 0.00012 27.6 4.4 12 181-192 6-17 (96)
38 PF07204 Orthoreo_P10: Orthore 75.4 1.8 3.9E-05 29.9 1.4 24 191-214 40-63 (98)
39 TIGR01149 mtrG N5-methyltetrah 75.0 20 0.00044 23.3 6.8 29 157-187 19-47 (70)
40 KOG1666 V-SNARE [Intracellular 74.9 42 0.00092 27.0 10.2 26 184-209 190-215 (220)
41 PF06008 Laminin_I: Laminin Do 74.4 32 0.0007 28.4 9.1 44 129-172 192-235 (264)
42 PF04510 DUF577: Family of unk 74.2 22 0.00048 27.6 7.3 105 64-191 65-171 (174)
43 PF13800 Sigma_reg_N: Sigma fa 73.7 7.9 0.00017 26.8 4.5 21 181-201 3-23 (96)
44 PF06072 Herpes_US9: Alphaherp 73.6 12 0.00026 23.6 4.6 10 170-179 8-17 (60)
45 PF04210 MtrG: Tetrahydrometha 72.9 23 0.0005 23.1 7.9 30 156-187 18-47 (70)
46 PRK01026 tetrahydromethanopter 72.2 26 0.00056 23.3 7.4 29 157-187 22-50 (77)
47 PF01217 Clat_adaptor_s: Clath 71.3 38 0.00083 24.9 13.9 48 47-94 49-96 (141)
48 PF12606 RELT: Tumour necrosis 69.4 3 6.4E-05 25.5 1.3 12 208-219 15-31 (50)
49 KOG2678 Predicted membrane pro 68.9 22 0.00047 28.8 6.3 20 163-182 193-212 (244)
50 PF09753 Use1: Membrane fusion 68.8 39 0.00084 27.8 8.2 12 80-91 113-124 (251)
51 PF06837 Fijivirus_P9-2: Fijiv 67.6 7.7 0.00017 30.4 3.5 37 134-170 21-59 (214)
52 KOG0812 SNARE protein SED5/Syn 67.0 63 0.0014 27.3 8.8 43 129-171 227-272 (311)
53 PF04906 Tweety: Tweety; Inte 66.5 94 0.002 27.6 10.6 8 211-218 205-212 (406)
54 TIGR00327 secE_euk_arch protei 66.0 25 0.00054 22.4 5.0 44 167-210 7-50 (61)
55 KOG1326 Membrane-associated pr 65.9 8.6 0.00019 37.6 4.1 30 182-211 1060-1089(1105)
56 PF12352 V-SNARE_C: Snare regi 65.4 32 0.00069 21.7 7.3 48 128-175 7-54 (66)
57 KOG3894 SNARE protein Syntaxin 65.3 59 0.0013 27.7 8.5 45 129-176 232-283 (316)
58 PF05478 Prominin: Prominin; 65.1 57 0.0012 31.8 9.7 22 194-215 420-441 (806)
59 PF13124 DUF3963: Protein of u 64.3 16 0.00035 20.5 3.4 20 186-205 17-36 (40)
60 PF11337 DUF3139: Protein of u 63.3 8.3 0.00018 26.1 2.7 6 193-198 5-10 (85)
61 KOG3498 Preprotein translocase 62.3 36 0.00077 21.9 5.2 42 158-199 3-44 (67)
62 PF05739 SNARE: SNARE domain; 61.8 36 0.00078 21.1 7.6 44 129-172 4-47 (63)
63 KOG3251 Golgi SNAP receptor co 61.7 84 0.0018 25.3 8.5 61 148-210 137-208 (213)
64 KOG2678 Predicted membrane pro 60.8 67 0.0015 26.1 7.7 26 172-197 195-221 (244)
65 KOG0809 SNARE protein TLG2/Syn 60.5 25 0.00055 29.6 5.5 42 129-170 218-259 (305)
66 PF01099 Uteroglobin: Uteroglo 59.8 17 0.00036 23.4 3.6 43 113-155 18-60 (67)
67 smart00096 UTG Uteroglobin. 59.5 21 0.00045 23.3 3.9 40 116-155 23-62 (69)
68 PHA02690 hypothetical protein; 58.3 53 0.0012 22.0 6.9 33 178-210 32-64 (90)
69 KOG3208 SNARE protein GS28 [In 57.2 1E+02 0.0023 24.9 8.4 22 190-211 206-229 (231)
70 COG1969 HyaC Ni,Fe-hydrogenase 56.5 11 0.00024 30.0 2.6 37 181-217 96-150 (227)
71 PF03904 DUF334: Domain of unk 56.3 92 0.002 25.3 7.8 21 197-217 154-174 (230)
72 cd00633 Secretoglobin Secretog 56.1 26 0.00056 22.4 4.0 42 113-154 18-59 (67)
73 PF07798 DUF1640: Protein of u 55.9 94 0.002 24.0 10.5 26 129-154 80-105 (177)
74 KOG3287 Membrane trafficking p 55.7 1E+02 0.0022 24.9 7.9 60 144-203 150-214 (236)
75 PRK10884 SH3 domain-containing 55.5 1.1E+02 0.0023 24.6 10.2 10 163-172 145-154 (206)
76 PF03302 VSP: Giardia variant- 55.4 7.8 0.00017 34.3 1.9 13 204-216 383-395 (397)
77 PF14575 EphA2_TM: Ephrin type 54.1 22 0.00047 23.6 3.4 18 197-214 6-23 (75)
78 PF08006 DUF1700: Protein of u 53.9 70 0.0015 24.7 6.9 11 80-90 5-15 (181)
79 PF01601 Corona_S2: Coronaviru 53.0 2.3 5.1E-05 39.1 -1.8 51 160-211 518-568 (610)
80 PF03164 Mon1: Trafficking pro 52.0 1E+02 0.0022 27.4 8.4 67 28-94 37-104 (415)
81 PF05659 RPW8: Arabidopsis bro 51.4 55 0.0012 24.7 5.7 48 109-157 31-79 (147)
82 PF00482 T2SF: Type II secreti 51.4 37 0.0008 23.4 4.6 35 167-201 78-113 (124)
83 KOG0859 Synaptobrevin/VAMP-lik 51.2 37 0.0008 27.0 4.8 52 136-187 125-176 (217)
84 PHA02844 putative transmembran 49.7 16 0.00034 24.1 2.1 15 192-206 49-63 (75)
85 PHA02557 22 prohead core prote 49.1 65 0.0014 26.9 6.1 94 78-172 89-190 (271)
86 PHA02650 hypothetical protein; 49.1 24 0.00052 23.6 2.9 18 187-204 45-62 (81)
87 TIGR01478 STEVOR variant surfa 48.5 19 0.00041 30.3 2.9 17 195-211 266-282 (295)
88 PF02439 Adeno_E3_CR2: Adenovi 48.5 28 0.0006 19.9 2.7 7 197-203 8-14 (38)
89 COG5547 Small integral membran 48.1 26 0.00056 22.0 2.8 19 188-206 3-21 (62)
90 PF13980 UPF0370: Uncharacteri 47.9 27 0.00058 22.0 2.8 15 187-201 2-16 (63)
91 PF15339 Afaf: Acrosome format 47.9 29 0.00063 26.9 3.6 24 192-215 128-152 (200)
92 KOG4782 Predicted membrane pro 46.9 61 0.0013 22.4 4.7 40 167-206 28-71 (108)
93 KOG0810 SNARE protein Syntaxin 46.9 45 0.00098 28.3 5.1 39 173-211 246-286 (297)
94 PTZ00370 STEVOR; Provisional 46.8 21 0.00045 30.1 2.9 17 195-211 262-278 (296)
95 smart00397 t_SNARE Helical reg 46.7 66 0.0014 19.6 5.8 44 129-172 12-55 (66)
96 PF04628 Sedlin_N: Sedlin, N-t 46.5 1.1E+02 0.0025 22.3 9.1 83 11-93 2-106 (132)
97 PRK11546 zraP zinc resistance 45.7 66 0.0014 24.2 5.2 17 129-145 89-105 (143)
98 PF00558 Vpu: Vpu protein; In 45.4 26 0.00057 23.6 2.7 20 194-213 6-25 (81)
99 PHA03054 IMV membrane protein; 44.8 12 0.00025 24.5 1.0 19 187-205 44-62 (72)
100 cd00193 t_SNARE Soluble NSF (N 44.4 69 0.0015 19.2 5.6 44 129-172 6-49 (60)
101 PF05527 DUF758: Domain of unk 43.0 45 0.00098 26.3 4.2 78 70-157 108-185 (186)
102 PF08372 PRT_C: Plant phosphor 42.6 1.5E+02 0.0032 22.7 6.8 13 178-190 80-92 (156)
103 PHA03011 hypothetical protein; 42.4 1E+02 0.0022 21.7 5.3 56 111-169 63-118 (120)
104 COG4327 Predicted membrane pro 42.3 50 0.0011 22.9 3.7 32 179-210 5-36 (101)
105 PHA02975 hypothetical protein; 41.5 39 0.00085 21.9 3.0 13 194-206 47-59 (69)
106 PF12420 DUF3671: Protein of u 41.4 1.2E+02 0.0027 21.4 5.9 18 186-203 39-56 (104)
107 PF06008 Laminin_I: Laminin Do 40.4 99 0.0022 25.5 6.2 50 131-180 54-103 (264)
108 COG4064 MtrG Tetrahydromethano 40.3 1E+02 0.0023 20.1 6.2 28 157-186 22-49 (75)
109 PF12575 DUF3753: Protein of u 40.2 40 0.00087 22.2 2.9 7 139-145 25-31 (72)
110 KOG1690 emp24/gp25L/p24 family 40.1 92 0.002 24.8 5.4 21 173-193 169-190 (215)
111 PF14914 LRRC37AB_C: LRRC37A/B 40.1 28 0.0006 26.3 2.4 10 192-201 119-128 (154)
112 PF03670 UPF0184: Uncharacteri 40.0 67 0.0015 21.8 4.1 31 157-187 40-70 (83)
113 PF12751 Vac7: Vacuolar segreg 40.0 31 0.00066 30.3 3.1 23 184-206 294-316 (387)
114 PF10031 DUF2273: Small integr 39.7 39 0.00085 20.6 2.7 13 187-199 2-14 (51)
115 COG5415 Predicted integral mem 39.2 1.8E+02 0.004 23.4 7.0 22 155-176 13-34 (251)
116 KOG0994 Extracellular matrix g 39.1 2.5E+02 0.0054 28.8 9.1 53 132-184 1664-1716(1758)
117 KOG4433 Tweety transmembrane/c 38.7 2E+02 0.0044 26.2 7.9 18 189-206 210-227 (526)
118 PRK13664 hypothetical protein; 38.4 65 0.0014 20.2 3.5 14 187-200 2-15 (62)
119 PF14992 TMCO5: TMCO5 family 38.3 2.4E+02 0.0053 23.7 10.5 18 181-198 207-224 (280)
120 KOG0811 SNARE protein PEP12/VA 38.0 1.1E+02 0.0024 25.6 6.0 16 175-190 223-238 (269)
121 COG3074 Uncharacterized protei 37.9 1.2E+02 0.0025 19.9 6.8 51 128-178 17-67 (79)
122 PHA02819 hypothetical protein; 37.3 53 0.0012 21.5 3.1 11 193-203 48-58 (71)
123 KOG2740 Clathrin-associated pr 37.1 1.3E+02 0.0029 26.3 6.4 44 51-94 53-96 (418)
124 PTZ00382 Variant-specific surf 36.0 21 0.00045 24.9 1.2 13 204-216 82-94 (96)
125 PF06695 Sm_multidrug_ex: Puta 35.9 1.6E+02 0.0035 21.3 5.9 21 176-198 58-78 (121)
126 PF05399 EVI2A: Ectropic viral 35.9 30 0.00065 27.8 2.2 17 192-208 126-142 (227)
127 PRK10573 type IV pilin biogene 35.9 1.4E+02 0.0031 26.1 6.8 17 1-17 1-18 (399)
128 TIGR03545 conserved hypothetic 35.8 2.5E+02 0.0054 26.2 8.4 51 128-178 190-240 (555)
129 PRK09697 protein secretion pro 35.5 32 0.00069 24.7 2.1 28 185-214 17-44 (139)
130 KOG3323 D-Tyr-tRNA (Tyr) deacy 35.5 1.7E+02 0.0036 21.9 5.9 87 9-95 21-119 (149)
131 KOG3369 Transport protein part 35.3 2.2E+02 0.0047 22.3 9.1 56 34-91 109-168 (199)
132 COG4499 Predicted membrane pro 34.7 63 0.0014 28.5 4.1 30 30-59 39-69 (434)
133 COG3524 KpsE Capsule polysacch 34.5 58 0.0013 27.8 3.7 19 129-147 230-248 (372)
134 PF01102 Glycophorin_A: Glycop 34.4 52 0.0011 24.1 3.1 13 195-207 67-79 (122)
135 PRK10381 LPS O-antigen length 34.3 61 0.0013 28.5 4.1 18 186-203 34-51 (377)
136 PF08999 SP_C-Propep: Surfacta 34.2 59 0.0013 21.9 3.0 20 191-210 32-51 (93)
137 PF13937 DUF4212: Domain of un 33.9 1.2E+02 0.0025 20.5 4.5 25 184-208 3-27 (81)
138 PF11675 DUF3271: Protein of u 33.8 1.3E+02 0.0028 24.7 5.5 55 3-60 28-82 (249)
139 PRK10299 PhoPQ regulatory prot 33.7 60 0.0013 19.4 2.7 25 190-214 2-28 (47)
140 cd01617 DCX Ubiquitin-like dom 33.6 76 0.0017 21.0 3.7 49 25-73 25-78 (80)
141 PF01708 Gemini_mov: Geminivir 33.3 15 0.00032 25.3 0.1 26 188-213 33-58 (91)
142 PHA02673 ORF109 EEV glycoprote 33.3 1.4E+02 0.0029 23.0 5.2 10 184-193 24-33 (161)
143 PF05531 NPV_P10: Nucleopolyhe 33.1 95 0.0021 20.6 3.9 39 129-171 18-56 (75)
144 PRK15348 type III secretion sy 32.9 85 0.0018 26.0 4.5 27 180-206 209-235 (249)
145 PRK00807 50S ribosomal protein 32.4 60 0.0013 19.8 2.7 22 38-59 10-31 (52)
146 PF11657 Activator-TraM: Trans 32.4 2.2E+02 0.0048 21.5 13.8 68 70-149 21-89 (144)
147 PF02038 ATP1G1_PLM_MAT8: ATP1 32.3 1.1E+02 0.0024 18.6 3.7 12 189-200 11-22 (50)
148 PF10039 DUF2275: Predicted in 32.0 68 0.0015 26.0 3.7 25 181-205 23-47 (218)
149 KOG3658 Tumor necrosis factor- 31.8 59 0.0013 30.8 3.7 29 187-215 677-705 (764)
150 PHA03164 hypothetical protein; 31.7 70 0.0015 21.2 3.0 20 192-211 58-77 (88)
151 PHA03386 P10 fibrous body prot 31.4 1.1E+02 0.0023 21.2 4.0 15 129-143 19-33 (94)
152 KOG4331 Polytopic membrane pro 31.2 99 0.0021 30.0 5.1 87 129-215 328-454 (865)
153 KOG0862 Synaptobrevin/VAMP-lik 31.1 2.9E+02 0.0062 22.4 8.2 66 130-197 119-195 (216)
154 PF06422 PDR_CDR: CDR ABC tran 31.1 64 0.0014 22.6 3.1 31 175-205 35-65 (103)
155 PF05440 MtrB: Tetrahydrometha 31.1 57 0.0012 22.8 2.7 20 187-206 74-93 (97)
156 PF06825 HSBP1: Heat shock fac 31.1 71 0.0015 19.8 2.9 19 155-173 33-51 (54)
157 PF07889 DUF1664: Protein of u 30.6 2.2E+02 0.0048 20.9 6.6 14 131-144 70-83 (126)
158 COG3771 Predicted membrane pro 29.9 38 0.00083 23.2 1.6 13 205-217 51-63 (97)
159 PF10168 Nup88: Nuclear pore c 29.7 3E+02 0.0065 26.6 8.1 20 74-93 533-552 (717)
160 PF03238 ESAG1: ESAG protein; 29.7 1.8E+02 0.0039 23.5 5.6 56 147-202 7-62 (231)
161 PF04888 SseC: Secretion syste 29.5 3E+02 0.0065 23.1 7.5 22 148-169 31-52 (306)
162 PHA02692 hypothetical protein; 29.4 43 0.00094 21.8 1.7 6 139-144 25-30 (70)
163 COG1459 PulF Type II secretory 29.4 4.1E+02 0.0088 23.6 10.0 40 130-169 109-148 (397)
164 PF13908 Shisa: Wnt and FGF in 29.3 27 0.00058 27.1 0.9 14 201-214 84-97 (179)
165 PF07438 DUF1514: Protein of u 28.7 56 0.0012 21.0 2.1 9 195-203 2-10 (66)
166 PF10392 COG5: Golgi transport 28.6 2.3E+02 0.0051 20.6 7.3 44 143-186 51-94 (132)
167 PLN03223 Polycystin cation cha 28.4 94 0.002 32.1 4.6 44 128-171 1580-1623(1634)
168 PHA01811 hypothetical protein 28.4 74 0.0016 20.3 2.6 18 44-61 5-22 (78)
169 PF02520 DUF148: Domain of unk 28.1 1.7E+02 0.0037 20.6 5.0 61 84-155 2-62 (113)
170 COG3685 Uncharacterized protei 27.9 2.2E+02 0.0048 21.9 5.6 18 145-162 73-90 (167)
171 PRK10132 hypothetical protein; 27.5 2.3E+02 0.005 20.2 8.5 18 156-173 40-57 (108)
172 PF00517 GP41: Retroviral enve 27.4 1.7E+02 0.0036 23.3 5.2 8 135-142 107-114 (204)
173 PF13706 PepSY_TM_3: PepSY-ass 27.4 1.1E+02 0.0025 17.0 3.1 10 190-199 6-15 (37)
174 KOG0972 Huntingtin interacting 27.2 1.9E+02 0.0042 24.6 5.6 17 77-93 245-261 (384)
175 KOG3220 Similar to bacterial d 27.2 3.1E+02 0.0068 22.2 6.5 56 109-168 135-190 (225)
176 cd00472 Ribosomal_L24e_L24 Rib 27.2 77 0.0017 19.6 2.5 23 38-60 12-34 (54)
177 PRK14125 cell division suppres 27.1 99 0.0021 21.8 3.5 14 186-199 2-15 (103)
178 PF00306 ATP-synt_ab_C: ATP sy 27.0 1.1E+02 0.0025 21.5 3.9 40 146-185 4-45 (113)
179 PF04799 Fzo_mitofusin: fzo-li 26.8 2.7E+02 0.0059 21.6 6.0 47 132-178 119-165 (171)
180 KOG4827 Uncharacterized conser 26.6 43 0.00093 26.6 1.6 19 185-203 238-256 (279)
181 PF10875 DUF2670: Protein of u 26.6 88 0.0019 22.8 3.1 26 187-212 18-43 (139)
182 PF04048 Sec8_exocyst: Sec8 ex 26.5 2.3E+02 0.0049 21.0 5.6 14 71-84 20-33 (142)
183 PF00664 ABC_membrane: ABC tra 26.5 3E+02 0.0066 21.2 10.5 25 130-154 164-188 (275)
184 PRK14891 50S ribosomal protein 26.3 72 0.0016 23.5 2.6 23 38-60 13-35 (131)
185 PF05659 RPW8: Arabidopsis bro 26.3 96 0.0021 23.4 3.5 14 180-193 85-98 (147)
186 PF13172 PepSY_TM_1: PepSY-ass 26.1 1.2E+02 0.0026 16.4 3.8 16 185-200 2-17 (34)
187 PF03607 DCX: Doublecortin; I 26.1 1E+02 0.0022 19.2 3.1 48 25-72 8-58 (60)
188 PF14004 DUF4227: Protein of u 26.1 1.2E+02 0.0025 20.0 3.4 23 187-209 2-24 (71)
189 PF12277 DUF3618: Protein of u 25.7 1.5E+02 0.0032 17.7 3.6 27 131-157 5-31 (49)
190 PF03555 Flu_C_NS2: Influenza 25.4 1.4E+02 0.003 17.8 3.2 31 143-173 5-36 (57)
191 PF05393 Hum_adeno_E3A: Human 25.3 59 0.0013 22.3 1.9 7 208-214 48-54 (94)
192 PRK13865 type IV secretion sys 25.3 3.3E+02 0.0071 22.2 6.6 7 172-178 21-27 (229)
193 PF15106 TMEM156: TMEM156 prot 25.0 46 0.00099 26.7 1.5 28 183-210 167-194 (226)
194 PF04999 FtsL: Cell division p 24.7 1.9E+02 0.004 19.7 4.5 10 201-210 23-32 (97)
195 COG1723 Uncharacterized conser 24.4 1.5E+02 0.0032 25.5 4.5 67 149-217 265-331 (331)
196 PHA02947 S-S bond formation pa 24.3 69 0.0015 25.8 2.4 15 28-42 11-25 (215)
197 PF14662 CCDC155: Coiled-coil 24.0 3.5E+02 0.0076 21.5 6.2 29 157-185 67-95 (193)
198 PF00523 Fusion_gly: Fusion gl 23.6 74 0.0016 29.1 2.8 13 129-142 432-444 (490)
199 COG1340 Uncharacterized archae 23.5 4.6E+02 0.01 22.3 9.8 50 129-186 138-187 (294)
200 PF06143 Baculo_11_kDa: Baculo 23.4 1.8E+02 0.004 19.7 4.0 12 185-196 29-40 (84)
201 PF13044 DUF3904: Protein of u 23.4 87 0.0019 26.0 2.9 36 179-214 399-435 (436)
202 PRK12430 putative bifunctional 23.3 1.4E+02 0.0031 26.2 4.3 41 159-199 103-143 (379)
203 KOG2662 Magnesium transporters 23.3 2.1E+02 0.0047 25.4 5.4 24 191-214 383-406 (414)
204 PF10504 DUF2452: Protein of u 23.2 2.6E+02 0.0055 21.5 5.2 44 131-180 32-75 (159)
205 COG3763 Uncharacterized protei 23.1 1.3E+02 0.0028 19.7 3.1 8 198-205 8-15 (71)
206 PRK10869 recombination and rep 23.0 5.4E+02 0.012 23.9 8.4 31 129-159 296-329 (553)
207 PF04531 Phage_holin_1: Bacter 22.8 72 0.0016 21.6 2.0 24 183-206 2-25 (84)
208 PRK15326 type III secretion sy 22.6 2.5E+02 0.0055 18.9 4.7 12 81-92 8-19 (80)
209 PF07439 DUF1515: Protein of u 21.9 3.1E+02 0.0067 19.6 8.3 46 131-176 10-59 (112)
210 PF14150 YesK: YesK-like prote 21.7 1.4E+02 0.0029 20.2 3.1 36 182-217 18-54 (81)
211 cd07912 Tweety_N N-terminal do 21.7 5.1E+02 0.011 23.2 7.6 12 161-172 169-180 (418)
212 TIGR02338 gimC_beta prefoldin, 21.6 2.1E+02 0.0045 20.1 4.4 35 135-172 62-96 (110)
213 PRK11901 hypothetical protein; 21.4 98 0.0021 26.6 2.9 15 197-211 41-55 (327)
214 PF00429 TLV_coat: ENV polypro 21.3 1E+02 0.0022 28.7 3.3 22 128-149 441-462 (561)
215 PF12279 DUF3619: Protein of u 21.3 1.6E+02 0.0035 21.7 3.8 19 185-203 67-85 (131)
216 PF13163 DUF3999: Protein of u 21.3 84 0.0018 28.1 2.7 22 189-210 406-427 (429)
217 PF05803 Chordopox_L2: Chordop 21.1 2.1E+02 0.0046 19.6 4.0 17 185-201 59-75 (87)
218 PRK05529 cell division protein 21.0 88 0.0019 25.8 2.6 19 181-199 25-43 (255)
219 KOG1655 Protein involved in va 20.9 2.3E+02 0.005 22.6 4.7 40 131-170 106-146 (218)
220 PF11026 DUF2721: Protein of u 20.9 3.4E+02 0.0074 19.8 7.6 12 181-192 53-64 (130)
221 PF14898 DUF4491: Domain of un 20.9 52 0.0011 22.8 1.0 14 192-205 34-47 (94)
222 KOG3003 Molecular chaperone of 20.8 4E+02 0.0087 21.8 6.1 29 150-178 91-119 (236)
223 KOG3065 SNAP-25 (synaptosome-a 20.7 2.9E+02 0.0063 23.2 5.6 45 130-174 219-263 (273)
224 PF13627 LPAM_2: Prokaryotic l 20.7 1.1E+02 0.0024 15.6 1.9 9 207-215 8-16 (24)
225 cd07634 BAR_GAP10-like The Bin 20.6 1.8E+02 0.0038 23.4 4.1 72 77-153 13-94 (207)
226 PF10853 DUF2650: Protein of u 20.6 1.5E+02 0.0033 16.9 2.7 18 186-203 18-35 (38)
227 KOG3230 Vacuolar assembly/sort 20.6 2.4E+02 0.0051 22.5 4.6 22 136-157 133-154 (224)
228 PF08858 IDEAL: IDEAL domain; 20.5 62 0.0013 18.2 1.1 17 142-158 11-27 (37)
229 PF15102 TMEM154: TMEM154 prot 20.3 24 0.00053 26.6 -0.8 8 210-217 73-80 (146)
230 COG3716 ManZ Phosphotransferas 20.3 2.2E+02 0.0047 23.8 4.6 44 73-126 28-71 (269)
231 PF06103 DUF948: Bacterial pro 20.0 2.8E+02 0.0061 18.5 7.2 12 131-142 35-46 (90)
232 PF02937 COX6C: Cytochrome c o 20.0 2.3E+02 0.005 18.6 3.9 24 187-210 12-35 (73)
233 smart00831 Cation_ATPase_N Cat 20.0 2.3E+02 0.0049 17.3 4.1 8 186-193 38-45 (64)
No 1
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-70 Score=415.33 Aligned_cols=214 Identities=75% Similarity=1.179 Sum_probs=208.4
Q ss_pred cceEEEEEEeCCeeEEeecCCCCCHHHHHHHHHhcCCCC-CCeeEEEECCeEEEEEEeCCEEEEEEecCCcChhhHHHHH
Q 027720 4 QSLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSS-NNKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFL 82 (219)
Q Consensus 4 ~~i~Ya~Iar~~~iLae~~~~~~~~~~~a~~il~~i~~~-~~k~~~~~~~~~~~~l~~~~~~~~~v~d~~~~~~~af~fL 82 (219)
|+|+|++||||++|||||++.+|||..+|..+|+++|++ ++|.+|.+|+|+|||+.+||++|+|++|++.++++||.||
T Consensus 1 m~iiYs~VARGTvvLaeft~~~gNf~sva~qiL~klp~~~n~k~tYs~d~y~Fh~l~~dg~tylcvadds~gR~ipfaFL 80 (217)
T KOG0859|consen 1 MSIIYSFVARGTVILAEFTEFSGNFSSIAAQILQKLPSSSNSKFTYSCDGYTFHYLVEDGLTYLCVADDSAGRQIPFAFL 80 (217)
T ss_pred CceeEEEEecceEEEEeeeeccCCHHHHHHHHHHhCCCCCCCceEEecCCeEEEEEEeCCeEEEEEEeccccccccHHHH
Confidence 689999999999999999999999999999999999998 6799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCCcccccccchhhhhHHHHHhhhhhcCCchhhhHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhh
Q 027720 83 ERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELL 162 (219)
Q Consensus 83 ~~i~~~f~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L 162 (219)
++|++.|.+.|++ ...++.+|++|++|++.|++.|++|.++|+ .|++.+++.+++|||++|.+|||++|+|||+||.|
T Consensus 81 e~Ik~~F~k~YG~-~a~ta~AysmN~EFs~vL~qqm~y~s~~p~-id~lskvkaqv~evk~vM~eNIekvldRGekiELL 158 (217)
T KOG0859|consen 81 ERIKEDFKKRYGG-GAHTAVAYSMNKEFSSVLKQQMQYCSEHPE-ISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELL 158 (217)
T ss_pred HHHHHHHHHHhcc-chhHHHHhHhHHHHHHHHHHHHHHHHcCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEee
Confidence 9999999999964 478899999999999999999999999998 69999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027720 163 VDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVLGIIIALILIIVLSVCGGFNC 219 (219)
Q Consensus 163 ~~ks~~L~~~s~~f~~~s~~l~~~~~~~~~k~~iii~~vv~~~~~~i~~~~c~gf~c 219 (219)
+|||++|+.+|..|++++++++|+|||+|.|+++++++++++++++|++.+||||.|
T Consensus 159 VdKTenl~~~s~~fr~q~r~~~r~mw~~n~kl~~iv~~~~~~~iyiiv~~~CgG~~~ 215 (217)
T KOG0859|consen 159 VDKTENLRSKSFDFRTQGRKLRRKMWFQNMKLKLIVLGVSISLIYIIVARRCGGFTC 215 (217)
T ss_pred echhhhhhhhhHHHHHHHHHHHHHHHHhccceehhhhhHHHHHHHHHHHHhccCCCC
Confidence 999999999999999999999999999999999999999999999999999999988
No 2
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.3e-35 Score=226.34 Aligned_cols=193 Identities=21% Similarity=0.419 Sum_probs=173.1
Q ss_pred ceEEEEEEe--CCeeEEeecC---CCCC----HHHHHHHHHhcCCCC-CCeeEEEECCeEEEEEEeCCEEEEEEecCCcC
Q 027720 5 SLIYSFVAR--GTVILAEYTE---FTGN----FTGIAAQCLQKLPSS-NNKFTYNCDGHTFNYLVDDGFTYCVVAVESVG 74 (219)
Q Consensus 5 ~i~Ya~Iar--~~~iLae~~~---~~~~----~~~~a~~il~~i~~~-~~k~~~~~~~~~~~~l~~~~~~~~~v~d~~~~ 74 (219)
+|++++|+| ++.|||...+ .+++ ..+.++.+.+++.+. +++.|.+.+.|.|||++++|++|+++||..||
T Consensus 1 mi~~T~I~RV~DGLPLa~s~d~~e~~~~s~~e~r~q~K~L~kkLs~~s~~r~Sietg~f~fHfli~~~Vcylvicd~~yP 80 (216)
T KOG0862|consen 1 MILLTLIARVRDGLPLAASTDDNEQSGDSLLEYRQQAKSLFKKLSQQSPTRCSIETGPFVFHFLIESGVCYLVICDKSYP 80 (216)
T ss_pred CceeEEEEEecCCcccccccCcccCCCchHHHHHHHHHHHHHhccCCCCcccccccCCeEEEEEecCCEEEEEEecCCCc
Confidence 589999999 5799986654 2333 467999999999988 78999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhhhCCCCCc-ccccccchhhhhHHHHHhhhhhcCCchhhhHHHHHHHHhhhhhhhchhcHHHHH
Q 027720 75 RQVPIAFLERVKEDFIKRYGGGKAA-TAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVL 153 (219)
Q Consensus 75 ~~~af~fL~~i~~~f~~~~~~~~~~-~~~~~~~~~~f~~~l~~~~~~~~~~~~~~dkl~~i~~~v~~vk~im~~ni~~~l 153 (219)
+.+||.||+++.++|.+.|+..... .+.||++ .+|++.|++.-+.|| |+...+.+.++.+++.+|+.+|.+||+.++
T Consensus 81 ~kLAF~YLedL~~EF~~~~~~~~~~~~~RPY~F-ieFD~~IQk~Kk~yn-d~r~~~n~~~~n~el~~v~~im~~niedvl 158 (216)
T KOG0862|consen 81 RKLAFSYLEDLAQEFDKSYGKNIIQPASRPYAF-IEFDTFIQKTKKRYN-DTRSQRNLLKLNQELQDVQRIMVENLEDVL 158 (216)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCccCCCeeE-EehhHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999755444 6789999 999999999999995 666679999999999999999999999999
Q ss_pred hhhhhHHhhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHH
Q 027720 154 DRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVL 199 (219)
Q Consensus 154 ~Rge~le~L~~ks~~L~~~s~~f~~~s~~l~~~~~~~~~k~~iii~ 199 (219)
.|||.|+.|..++.+|+..|+..+++|+.++++..|.+|+-++.++
T Consensus 159 ~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~~aa~~~~~ 204 (216)
T KOG0862|consen 159 QRGEVLNALSSMASELSSESRKYPKTAKGINRKSLIRKYAAYVVFF 204 (216)
T ss_pred hhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998444433
No 3
>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.4e-31 Score=200.69 Aligned_cols=152 Identities=22% Similarity=0.354 Sum_probs=136.7
Q ss_pred HHHHHHHHhcCCCCCCeeEEEECCeEEEEEE-eCCEEEEEEecCCcChhhHHHHHHHHHHHHHhhhCCCCCcccccccch
Q 027720 29 TGIAAQCLQKLPSSNNKFTYNCDGHTFNYLV-DDGFTYCVVAVESVGRQVPIAFLERVKEDFIKRYGGGKAATAVANGLN 107 (219)
Q Consensus 29 ~~~a~~il~~i~~~~~k~~~~~~~~~~~~l~-~~~~~~~~v~d~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~ 107 (219)
.-+++.+.++.+|+ .+.+++.+.|..|... .||+++++++|.+||.|+||.+|+++.++|....+..+|+...+..
T Consensus 41 ~F~sktvaeRt~~g-~rqsvk~~~Y~~h~yvrndgL~~V~~~D~eYP~rvA~tLL~kvld~~~~k~~~~~W~~~~~~~-- 117 (198)
T KOG0861|consen 41 TFISKTVAERTGPG-QRQSVKHEEYLVHVYVRNDGLCGVLIADDEYPVRVAFTLLNKVLDEFTTKVPATQWPVGETAD-- 117 (198)
T ss_pred HHHHHHHHHhcCcc-cccccccceeEEEEEEecCCeeEEEEecCcCchhHHHHHHHHHHHHHhhcCcccccCcCCCcC--
Confidence 34778999999998 4789999999999876 4699999999999999999999999999998888788888444332
Q ss_pred hhhhHHHHHhhhhhcCCchhhhHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHHhHHHHHH
Q 027720 108 KEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRR 185 (219)
Q Consensus 108 ~~f~~~l~~~~~~~~~~~~~~dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~~s~~l~~ 185 (219)
..| |.|...+.+| +||.++|++.++|+++||+|.+|.++|+.+|+|||+||+|++||++|+.+|++|+++|||.++
T Consensus 118 ~~~-~~L~~~l~ky-qdP~ead~l~kvQ~EldETKiiLhkTiesVL~RgEKLDdLV~KSe~Ls~qSKmfYKsAKK~Ns 193 (198)
T KOG0861|consen 118 LSY-PYLDTLLSKY-QDPAEADPLLKVQNELDETKIILHKTIESVLERGEKLDDLVSKSENLSLQSKMFYKSAKKTNS 193 (198)
T ss_pred CCc-hhHHHHHHHh-cChhhhChHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 233 7899999999 899999999999999999999999999999999999999999999999999999999998764
No 4
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=99.96 E-value=2.3e-29 Score=175.69 Aligned_cols=88 Identities=44% Similarity=0.865 Sum_probs=84.8
Q ss_pred hhHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 027720 128 ISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVLGIIIALIL 207 (219)
Q Consensus 128 ~dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~~s~~l~~~~~~~~~k~~iii~~vv~~~~~ 207 (219)
.|++.++++++++|+++|.+|++++++|||+||+|+++|++|+.+|..|+++|++++|++||+++|++++++++++++++
T Consensus 2 ~dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~ 81 (89)
T PF00957_consen 2 NDKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIIL 81 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhh
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcC
Q 027720 208 IIVLSVCG 215 (219)
Q Consensus 208 ~i~~~~c~ 215 (219)
+|++.+||
T Consensus 82 ~i~~~~~g 89 (89)
T PF00957_consen 82 IIIIVICG 89 (89)
T ss_dssp HHHHTT--
T ss_pred HHHHHHhC
Confidence 99999996
No 5
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.2e-29 Score=177.19 Aligned_cols=87 Identities=39% Similarity=0.728 Sum_probs=82.5
Q ss_pred hhHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 027720 128 ISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVLGIIIALIL 207 (219)
Q Consensus 128 ~dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~~s~~l~~~~~~~~~k~~iii~~vv~~~~~ 207 (219)
.+++.++|+++++|++||++||+|+|||||||++|++||++|+..|..|++.|.++||+|||++.|+.++++++++++++
T Consensus 28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~il~~v~~i~l~ 107 (116)
T KOG0860|consen 28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRIILGLVIIILLV 107 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHhc
Q 027720 208 IIVLSVC 214 (219)
Q Consensus 208 ~i~~~~c 214 (219)
+|++.+.
T Consensus 108 iiii~~~ 114 (116)
T KOG0860|consen 108 VIIIYIF 114 (116)
T ss_pred HHHHHHh
Confidence 8776653
No 6
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=99.90 E-value=4.3e-23 Score=158.88 Aligned_cols=180 Identities=21% Similarity=0.282 Sum_probs=140.5
Q ss_pred eEEEEEEeCC--eeEEe-ecCCCCCH--HHHHHHHHhcCCCC-CCeeEEEECCeEEEEEEe-CCEEEEEEecCCcChhhH
Q 027720 6 LIYSFVARGT--VILAE-YTEFTGNF--TGIAAQCLQKLPSS-NNKFTYNCDGHTFNYLVD-DGFTYCVVAVESVGRQVP 78 (219)
Q Consensus 6 i~Ya~Iar~~--~iLae-~~~~~~~~--~~~a~~il~~i~~~-~~k~~~~~~~~~~~~l~~-~~~~~~~v~d~~~~~~~a 78 (219)
++|..+..+. .+|++ ++..+..| ...+..+|..+.|- .++.+++.++|.|||... +|++|+|+++++||.++|
T Consensus 3 s~~~~~~~~~~~~~~~~~~s~~~~~ff~~~~v~~~l~~~~~~~a~~~~ies~~~~~~~~~~s~gi~y~~~~~~e~p~~la 82 (190)
T COG5143 3 SISLFRVKGEPLRTLSDAESLSSFSFFHRSKVKEVLRFLSKTSASRASIESGDYFFHYLKMSSGIVYVPISDKEYPNKLA 82 (190)
T ss_pred eEEEEeecCCcceeeccccccCcccccccchHHHHHHHhcccccchhccccCceEEEEEecCCCceeEEecccccchhhh
Confidence 4555666554 33443 22222222 34666777776554 345678889999999875 599999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCCCCcc-cccccchhhhhHHHHHhhhhhcCCchhhhHHHHHHHHhhhhhhhchhcHHHHHhhhh
Q 027720 79 IAFLERVKEDFIKRYGGGKAAT-AVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGE 157 (219)
Q Consensus 79 f~fL~~i~~~f~~~~~~~~~~~-~~~~~~~~~f~~~l~~~~~~~~~~~~~~dkl~~i~~~v~~vk~im~~ni~~~l~Rge 157 (219)
++.++++..+|.......++.. ..++.+ .+|++.+++ .| ++|...|++.+++.+++++|.+|.+||+++|+|||
T Consensus 83 ~~~~~~~~~~~~~s~~~~~~~d~~~~~~~-~~~d~~~e~---~y-~d~s~~D~~d~l~~el~e~K~~l~k~ie~~l~R~e 157 (190)
T COG5143 83 YGYLNSIATEFLKSSALEQLIDDTVGIMR-VNIDKVIEK---GY-RDPSIQDKLDQLQQELEETKRVLNKNIEKVLYRDE 157 (190)
T ss_pred hHHHHhhccHhhhhhhHhhcccCccchhh-hhHHHHHHh---hc-CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 9999999999887664444433 233333 566666665 26 67888899999999999999999999999999999
Q ss_pred hHHhhHHhhhhHHHHHHHHHHhHHHHHHHHHHH
Q 027720 158 KIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQ 190 (219)
Q Consensus 158 ~le~L~~ks~~L~~~s~~f~~~s~~l~~~~~~~ 190 (219)
+|+.|+++|+.|...|+.|+++|++.+..+||+
T Consensus 158 kl~~lv~~ss~L~~~s~~~~k~akk~n~~~~~~ 190 (190)
T COG5143 158 KLDLLVDLSSILLLSSKMFPKSAKKSNLCCLIN 190 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeC
Confidence 999999999999999999999999999999995
No 7
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D ....
Probab=99.82 E-value=2.1e-19 Score=123.69 Aligned_cols=81 Identities=35% Similarity=0.703 Sum_probs=73.4
Q ss_pred HHHHHHhcCCCCC-CeeEEEECCeEEEEEEeCCEEEEEEecCCcChhhHHHHHHHHHHHHHhhhCCCCCcccccccchhh
Q 027720 31 IAAQCLQKLPSSN-NKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFIKRYGGGKAATAVANGLNKE 109 (219)
Q Consensus 31 ~a~~il~~i~~~~-~k~~~~~~~~~~~~l~~~~~~~~~v~d~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~~ 109 (219)
+|+++|+++++.+ +|.+++.+++.||++++||++|+|+||+++|+++||.||++|+++|.++|+..++..+.|+++ .+
T Consensus 1 ~a~~il~~i~~~~~~k~s~~~~~~~fh~~~~~~i~~~citd~~~~~r~aF~fL~~i~~~F~~~~~~~~~~~a~~~~~-~~ 79 (83)
T PF13774_consen 1 QARKILKRIPPNGNSKMSYESGNYVFHYLVEDGIAYLCITDKSYPKRVAFAFLEEIKQEFIQTYGGDQIKSASPYSF-KE 79 (83)
T ss_dssp HHHHHHHTS-TTSESEEEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHCTTTTTTTSTTTTT-HH
T ss_pred CHHHHHHhcCCCCCCeEEEEECCEEEEEEEcCCeEEEEEEcCCCCcchHHHHHHHHHHHHHHHcCcchhcccCCcch-hh
Confidence 5889999999765 899999999999999999999999999999999999999999999999997677888889999 88
Q ss_pred hhH
Q 027720 110 FGP 112 (219)
Q Consensus 110 f~~ 112 (219)
|++
T Consensus 80 F~~ 82 (83)
T PF13774_consen 80 FDS 82 (83)
T ss_dssp HHH
T ss_pred cCC
Confidence 875
No 8
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=97.96 E-value=4.8e-05 Score=59.30 Aligned_cols=76 Identities=21% Similarity=0.353 Sum_probs=69.2
Q ss_pred HHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 027720 130 KLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVLGIIIAL 205 (219)
Q Consensus 130 kl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~~s~~l~~~~~~~~~k~~iii~~vv~~~ 205 (219)
+...++...++++.+|..|+|++++||++...+.|+.++|+.+.+.|++-+.+...++|||.-|+=.+++....+.
T Consensus 95 ~s~~~~~~~d~~~~~~~~~~d~~~e~~y~d~s~~D~~d~l~~el~e~K~~l~k~ie~~l~R~ekl~~lv~~ss~L~ 170 (190)
T COG5143 95 KSSALEQLIDDTVGIMRVNIDKVIEKGYRDPSIQDKLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLSSILL 170 (190)
T ss_pred hhhhHhhcccCccchhhhhHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 5678889999999999999999999999999999999999999999999999999999999999888877654443
No 9
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=96.84 E-value=0.025 Score=38.88 Aligned_cols=77 Identities=22% Similarity=0.330 Sum_probs=47.5
Q ss_pred hHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 027720 129 SKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVLGIIIALILI 208 (219)
Q Consensus 129 dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~~s~~l~~~~~~~~~k~~iii~~vv~~~~~~ 208 (219)
+++..++..+.+.-+.+.++=+++=+=.++-+.|.+.|+..+.+|...++.. +...++-+-+.+++++++++++++
T Consensus 10 ~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~----~~~~~k~~~i~~~iv~~~~~~i~~ 85 (89)
T PF00957_consen 10 EQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKM----WWRNYKLYIIIIIIVIIIILIIII 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHhHHhhhhhhhhHHHH
Confidence 4455555555555555555555555556666778888888888888876643 444455666666665555555555
Q ss_pred H
Q 027720 209 I 209 (219)
Q Consensus 209 i 209 (219)
.
T Consensus 86 ~ 86 (89)
T PF00957_consen 86 V 86 (89)
T ss_dssp T
T ss_pred H
Confidence 4
No 10
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=96.68 E-value=0.053 Score=37.64 Aligned_cols=75 Identities=15% Similarity=0.282 Sum_probs=45.5
Q ss_pred HHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHH----------hHHHHHHHHHHHHhHHHHHHHHHH
Q 027720 133 KVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQ----------QGTQMRRKMWFQNMKIKLIVLGII 202 (219)
Q Consensus 133 ~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~----------~s~~l~~~~~~~~~k~~iii~~vv 202 (219)
.+-+.+..++..|.+.+++. ...++.|.+.|+.|......+.. --+++.|+.|.-++-+++.+++++
T Consensus 5 ~vT~~L~rt~~~m~~ev~~s---~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~ 81 (92)
T PF03908_consen 5 DVTESLRRTRQMMAQEVERS---ELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFL 81 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34455556666666555443 44566666666666554443332 235667777777777777777777
Q ss_pred HHHHHHHH
Q 027720 203 IALILIIV 210 (219)
Q Consensus 203 ~~~~~~i~ 210 (219)
++++||+|
T Consensus 82 ~~v~yI~~ 89 (92)
T PF03908_consen 82 LVVLYILW 89 (92)
T ss_pred HHHHHHhh
Confidence 77777665
No 11
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.32 E-value=0.034 Score=46.24 Aligned_cols=46 Identities=17% Similarity=0.308 Sum_probs=39.0
Q ss_pred hHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHH
Q 027720 129 SKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQ 174 (219)
Q Consensus 129 dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~ 174 (219)
+.+.+++.++.||.+|+.+==.-|=+-|+.+|++++.-++.+.+..
T Consensus 180 q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nve 225 (269)
T KOG0811|consen 180 QAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVE 225 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHH
Confidence 6788999999999999988666788999999999988888876643
No 12
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.50 E-value=0.11 Score=43.85 Aligned_cols=76 Identities=22% Similarity=0.401 Sum_probs=46.1
Q ss_pred hHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHH---HHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 027720 129 SKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLR---SQAQDFRQQGTQMRRKMWFQNMKIKLIVLGIIIAL 205 (219)
Q Consensus 129 dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~---~~s~~f~~~s~~l~~~~~~~~~k~~iii~~vv~~~ 205 (219)
+.+.++++.+.|++++-.+=---|-..||.+|.++...++-. .++.+=-+.|.+..++. |++|+++|++++++++
T Consensus 206 ~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkka--RK~k~i~ii~~iii~~ 283 (297)
T KOG0810|consen 206 DEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKA--RKWKIIIIIILIIIIV 283 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhceeeeehHHHHHHH
Confidence 567778888888888876655667788988888876554433 33333334455555444 3455555554444433
Q ss_pred H
Q 027720 206 I 206 (219)
Q Consensus 206 ~ 206 (219)
+
T Consensus 284 v 284 (297)
T KOG0810|consen 284 V 284 (297)
T ss_pred H
Confidence 3
No 13
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=95.22 E-value=0.12 Score=41.62 Aligned_cols=76 Identities=16% Similarity=0.278 Sum_probs=44.7
Q ss_pred hHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHH---HHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 027720 129 SKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQ---AQDFRQQGTQMRRKMWFQNMKIKLIVLGIIIA 204 (219)
Q Consensus 129 dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~---s~~f~~~s~~l~~~~~~~~~k~~iii~~vv~~ 204 (219)
..+.++++-+.|+.+...+=-+.+.++.|.+|.+.+..++-+.+ +..-..+|-+--|+...+++..|.|+.+++|+
T Consensus 185 ~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c~gI~~iii~v 263 (280)
T COG5074 185 QEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKKIRCYGICFIIIIV 263 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhcceehhhhHHHHHHH
Confidence 34556667777777776665677889999999998887776533 12222223333444444444545444443333
No 14
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=94.87 E-value=0.78 Score=31.70 Aligned_cols=39 Identities=5% Similarity=0.082 Sum_probs=19.3
Q ss_pred HHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhh
Q 027720 130 KLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTEN 168 (219)
Q Consensus 130 kl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~ 168 (219)
.+....+.+.+.-+-...|++.+.+.-+.|..+.+.=.+
T Consensus 9 ~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~ 47 (92)
T PF03908_consen 9 SLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDG 47 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444444444444455555555555555555544333
No 15
>PF04086 SRP-alpha_N: Signal recognition particle, alpha subunit, N-terminal; InterPro: IPR007222 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents the alpha subunit of the SR receptor.; GO: 0003924 GTPase activity, 0005047 signal recognition particle binding, 0005525 GTP binding, 0006184 GTP catabolic process, 0006886 intracellular protein transport, 0005785 signal recognition particle receptor complex; PDB: 2FH5_A 2GO5_1.
Probab=94.04 E-value=0.099 Score=43.75 Aligned_cols=88 Identities=23% Similarity=0.349 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCCCCCCeeEEEECCeEEEEEEeC--CEEEEEEecCCcChhhHHHHHHHHHHHHHhhhCCCCC----ccc-
Q 027720 29 TGIAAQCLQKLPSSNNKFTYNCDGHTFNYLVDD--GFTYCVVAVESVGRQVPIAFLERVKEDFIKRYGGGKA----ATA- 101 (219)
Q Consensus 29 ~~~a~~il~~i~~~~~k~~~~~~~~~~~~l~~~--~~~~~~v~d~~~~~~~af~fL~~i~~~f~~~~~~~~~----~~~- 101 (219)
..+++.+|=.=.. ...+|++++|..++...| +++|++|-..-+.-..+=.||+.|+..|...|...-. ...
T Consensus 5 n~LI~~vlleeR~--~~~~~~~d~y~lkw~~~Ne~~LvfVvvYq~il~l~yvd~LL~~v~~~F~~~y~~~l~~~~~~~~~ 82 (279)
T PF04086_consen 5 NALIRDVLLEERS--GNSSFTYDNYTLKWTLDNELGLVFVVVYQKILQLTYVDKLLDDVKKEFVKLYKNQLKQLKPNTSI 82 (279)
T ss_dssp HHHHHHTGGG---------------EEEEEEETTTTEEEEEEES-GGGHHHHHHHHHHHHHHHHHHTHHHHHSSSTHHHH
T ss_pred HHHHHHhheeecc--CCCceeEcCEEEEEEEeccCCEEEeeeecccccchHHHHHHHHHHHHHHHHHhHHhhcccccccc
Confidence 4455555433222 234689999999998876 6999999999999888999999999999999953211 111
Q ss_pred ccc-cchhhhhHHHHHhh
Q 027720 102 VAN-GLNKEFGPKLKEHM 118 (219)
Q Consensus 102 ~~~-~~~~~f~~~l~~~~ 118 (219)
..+ .|...|...|++.-
T Consensus 83 ~~~~~Fd~~F~~~l~~~e 100 (279)
T PF04086_consen 83 NEYFDFDEEFDQLLKELE 100 (279)
T ss_dssp T-----HHHHHHHHHHHC
T ss_pred ccchhHHHHHHHHHHHHH
Confidence 112 55556666665544
No 16
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.27 E-value=0.36 Score=43.31 Aligned_cols=86 Identities=17% Similarity=0.315 Sum_probs=64.1
Q ss_pred EEEEEEeCCeeEEeecCCCCCH----HHHHHHHHhcCCCCCCeeEEEECCeEEEEEEeC--CEEEEEEecCCcChhhHHH
Q 027720 7 IYSFVARGTVILAEYTEFTGNF----TGIAAQCLQKLPSSNNKFTYNCDGHTFNYLVDD--GFTYCVVAVESVGRQVPIA 80 (219)
Q Consensus 7 ~Ya~Iar~~~iLae~~~~~~~~----~~~a~~il~~i~~~~~k~~~~~~~~~~~~l~~~--~~~~~~v~d~~~~~~~af~ 80 (219)
.++.+.+|+.+|--|.....+| ..+++.+|-.= +. +..+++.+.|+.-|-.++ +++|+|+-.+-..-..+-.
T Consensus 4 ~faIFtkgG~vLw~~~~~~~~~~~~in~lI~~~ll~e-r~-~~~~~~~~~yTlk~q~~N~~~lvfvvvfqki~~L~yv~~ 81 (587)
T KOG0781|consen 4 QFAIFTKGGLVLWCYQEVGDNLKGPINALIRSVLLSE-RG-GVNSFTFEAYTLKYQLDNQYSLVFVVVFQKILTLTYVDK 81 (587)
T ss_pred eeeeecCCcEEEEEecccchhccchHHHHHHHHHHHh-hc-CcccCchhheeEeeeecCCccEEEEEEEeccchhhhHHH
Confidence 5778889999999998765555 44444444331 11 223478888888886654 7899999998888888999
Q ss_pred HHHHHHHHHHhhhC
Q 027720 81 FLERVKEDFIKRYG 94 (219)
Q Consensus 81 fL~~i~~~f~~~~~ 94 (219)
||+++.+.|...|.
T Consensus 82 ll~~v~~~f~e~~~ 95 (587)
T KOG0781|consen 82 LLNDVLNLFREKYD 95 (587)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999884
No 17
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=92.54 E-value=1.4 Score=36.40 Aligned_cols=38 Identities=16% Similarity=0.440 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhHHHHHHH---HHHHHhHHHHHHHHHHHHHHHH
Q 027720 169 LRSQAQDFRQQGTQMRRK---MWFQNMKIKLIVLGIIIALILI 208 (219)
Q Consensus 169 L~~~s~~f~~~s~~l~~~---~~~~~~k~~iii~~vv~~~~~~ 208 (219)
+..+...+...+++++.+ .|+ ++.|+++++|++++++.
T Consensus 204 ~d~n~~~l~~~~~rl~~~~~~~~~--~~~~~~i~~v~~~Fi~m 244 (251)
T PF09753_consen 204 LDRNLSSLKRESKRLKEHSSKSWG--CWTWLMIFVVIIVFIMM 244 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHH
Confidence 334444444444444433 233 55555555544444433
No 18
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.
Probab=89.73 E-value=5.6 Score=29.82 Aligned_cols=58 Identities=12% Similarity=0.195 Sum_probs=37.8
Q ss_pred HHHHhcCCCC---------CCeeEEEECCeEEEEEE-eCCEEEEEEecCCcChhhHHHHHHHHHHHHHh
Q 027720 33 AQCLQKLPSS---------NNKFTYNCDGHTFNYLV-DDGFTYCVVAVESVGRQVPIAFLERVKEDFIK 91 (219)
Q Consensus 33 ~~il~~i~~~---------~~k~~~~~~~~~~~~l~-~~~~~~~~v~d~~~~~~~af~fL~~i~~~f~~ 91 (219)
+.+..++.|. .+-.+++.+.|..|+.- -.|+-|+++||+..+. ..-.+++.+.+.|..
T Consensus 46 ~~i~~klsp~~~~~~~~~~~g~~~~~T~~yklh~~eT~TGlKFvl~td~~~~~-~~~~l~~~~~~lY~d 113 (142)
T PF04099_consen 46 KAIASKLSPVDSKPNEPGSSGFESFETDTYKLHCFETPTGLKFVLITDPNVPS-LRDELLRIYYELYVD 113 (142)
T ss_dssp HHHHHHT-SSSSSS-SSS--SEEEEEESS-EEEEEE-TTS-EEEEEE-TTCCH-CHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccccccceeEEEEEeCCEEEEEEEcCcCcEEEEEecCCCcc-HHHHHHHHHHHHHHH
Confidence 4566677662 34567888999999976 5799999999999863 344456666665544
No 19
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=89.49 E-value=4.3 Score=26.55 Aligned_cols=51 Identities=22% Similarity=0.337 Sum_probs=25.0
Q ss_pred hhhHHhhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 027720 156 GEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVLGIIIALILII 209 (219)
Q Consensus 156 ge~le~L~~ks~~L~~~s~~f~~~s~~l~~~~~~~~~k~~iii~~vv~~~~~~i 209 (219)
.++++.|+..++.+.........+-.+++-...| -+.++++++|.+++++|
T Consensus 19 ~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW---~~r~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 19 EERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKW---IWRTIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4555555555555555544444444444433322 22355565555555444
No 20
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.21 E-value=6.6 Score=28.34 Aligned_cols=28 Identities=7% Similarity=0.285 Sum_probs=19.1
Q ss_pred cHHHHHhhhhhHHhhHHhhhhHHHHHHHHHH
Q 027720 148 NIEKVLDRGEKIELLVDRTENLRSQAQDFRQ 178 (219)
Q Consensus 148 ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~ 178 (219)
.++.+- +|-|.|.+-|+..+..|...++
T Consensus 58 kL~~L~---drad~L~~~as~F~~~A~klkr 85 (116)
T KOG0860|consen 58 KLDELD---DRADQLQAGASQFEKTAVKLKR 85 (116)
T ss_pred hHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 4455667788888888887765
No 21
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=88.10 E-value=2.6 Score=34.22 Aligned_cols=80 Identities=15% Similarity=0.201 Sum_probs=40.5
Q ss_pred HHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 027720 130 KLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVLGIIIALILII 209 (219)
Q Consensus 130 kl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~~s~~l~~~~~~~~~k~~iii~~vv~~~~~~i 209 (219)
.+.++-..+++.-.-=.+|+|.+-..-+.-+ +.++.=..+...--+.+++. |+..|+-|.+.++++++|++++|-.
T Consensus 196 el~qLfndm~~~V~eq~e~Vd~I~~~~~~~~---~n~~~g~~h~d~AvksaRaa-Rkkki~c~gI~~iii~viv~vv~~v 271 (280)
T COG5074 196 ELTQLFNDMEELVIEQQENVDVIDKNVEDAQ---ENVEQGVGHTDKAVKSARAA-RKKKIRCYGICFIIIIVIVVVVFKV 271 (280)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHhhHhhHH---hhHHHhhhhHHHHHHHHHHH-HhcceehhhhHHHHHHHHHHHHhcc
Confidence 3444445554444444456665544433332 22222222222222334333 4455678888888888888887655
Q ss_pred HHHh
Q 027720 210 VLSV 213 (219)
Q Consensus 210 ~~~~ 213 (219)
..++
T Consensus 272 ~~~v 275 (280)
T COG5074 272 VPFV 275 (280)
T ss_pred cchh
Confidence 4444
No 22
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=87.87 E-value=5.8 Score=38.44 Aligned_cols=10 Identities=20% Similarity=0.736 Sum_probs=4.3
Q ss_pred HHHHHHHhcC
Q 027720 206 ILIIVLSVCG 215 (219)
Q Consensus 206 ~~~i~~~~c~ 215 (219)
++.++...||
T Consensus 429 ~~~~lGLl~G 438 (806)
T PF05478_consen 429 LCLLLGLLCG 438 (806)
T ss_pred HHHHHHHHHh
Confidence 3334444554
No 23
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.89 E-value=0.56 Score=46.21 Aligned_cols=47 Identities=19% Similarity=0.386 Sum_probs=37.9
Q ss_pred hchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHHhHHHHHHHHHHH
Q 027720 144 VMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQ 190 (219)
Q Consensus 144 im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~~s~~l~~~~~~~ 190 (219)
....--+.+.+|||+|+.++++|++|++++.+|-..|.++.-++-.+
T Consensus 942 ~~~~a~~~l~e~~erL~~~e~~t~~~~~sa~~~s~~a~e~~~~~~~k 988 (993)
T KOG1983|consen 942 AASGALQPLNERGERLSRLEERTAEMANSAKQFSSTAHELTGKYKVK 988 (993)
T ss_pred hhhhcchhhHhhccccchHHHHHHHhhccHHHHHHHHHHHHhhhhhh
Confidence 33445578899999999999999999999999999887776444333
No 24
>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.11 E-value=21 Score=30.78 Aligned_cols=90 Identities=16% Similarity=0.275 Sum_probs=61.9
Q ss_pred CCCcceEEEEEEeCCeeEEee-c-CCCCCHHHHHH-HHHhcCCCCCCeeEEEECCeEEEEEEeCCEEEEEEecCCcChhh
Q 027720 1 MGQQSLIYSFVARGTVILAEY-T-EFTGNFTGIAA-QCLQKLPSSNNKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQV 77 (219)
Q Consensus 1 ~~~~~i~Ya~Iar~~~iLae~-~-~~~~~~~~~a~-~il~~i~~~~~k~~~~~~~~~~~~l~~~~~~~~~v~d~~~~~~~ 77 (219)
|..|.++|. .||.+++.-. . +-.++..++-+ .++....-.++ ..+.++-+|||...+++-.++||........
T Consensus 1 misglfi~n--~rGevlink~fr~dlkrs~~diFRv~vi~n~d~r~P--V~~igsttf~~~r~~nl~lvaitksN~Nva~ 76 (446)
T KOG0938|consen 1 MISGLFIYN--LRGEVLINKTFRDDLKRSIVDIFRVQVINNLDVRSP--VLTIGSTTFHHIRSSNLWLVAITKSNANVAA 76 (446)
T ss_pred CcceEEEEe--ccCcEEEehhhhhhhhhhHHHHHHHhhhhccccCCC--eeEecceeEEEEeeccEEEEEEecCCCchhh
Confidence 344444443 5788877753 2 23455555443 23333222222 4678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhC
Q 027720 78 PIAFLERVKEDFIKRYG 94 (219)
Q Consensus 78 af~fL~~i~~~f~~~~~ 94 (219)
.|.||.++-+.+..-++
T Consensus 77 v~eFl~kl~avm~aYfg 93 (446)
T KOG0938|consen 77 VFEFLYKLDAVMNAYFG 93 (446)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999888776554
No 25
>PTZ00478 Sec superfamily; Provisional
Probab=84.49 E-value=4.9 Score=27.10 Aligned_cols=57 Identities=9% Similarity=0.063 Sum_probs=39.3
Q ss_pred HHhhhhhHHhhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 027720 152 VLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVLGIIIALILI 208 (219)
Q Consensus 152 ~l~Rge~le~L~~ks~~L~~~s~~f~~~s~~l~~~~~~~~~k~~iii~~vv~~~~~~ 208 (219)
+.+..+.++.+.+...+.-.+|.+|-+..+|=.|+-+.+--+...+-.+++-++-|+
T Consensus 9 ~~~~m~~~~~v~~~~~eF~kds~r~vkrctKPdrkEf~kiakat~iGf~imG~IGy~ 65 (81)
T PTZ00478 9 LTDKSNPVGYVVSGVQEFANDSRRLIRKCTKPDAKEYTNIAYACSVGFFIMGFIGYS 65 (81)
T ss_pred hhcccchhHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556677778888888888888888888888888777777665554444433333
No 26
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=83.79 E-value=22 Score=28.85 Aligned_cols=26 Identities=8% Similarity=0.203 Sum_probs=13.2
Q ss_pred hhHHHHHHHHhhhhhhhchhcHHHHHhhh
Q 027720 128 ISKLAKVKAQVSEVKGVMMDNIEKVLDRG 156 (219)
Q Consensus 128 ~dkl~~i~~~v~~vk~im~~ni~~~l~Rg 156 (219)
.|=+..++.++++|. .+++...+.++
T Consensus 96 ~dF~~~Lq~~Lk~V~---tde~k~~~~~e 121 (230)
T PF03904_consen 96 NDFQDILQDELKDVD---TDELKNIAQNE 121 (230)
T ss_pred HHHHHHHHHHHHhhc---hHHHHHHHHHH
Confidence 355556666666553 23454444443
No 27
>PF09426 Nyv1_N: Vacuolar R-SNARE Nyv1 N terminal; InterPro: IPR019005 This entry represents the N-terminal domain of vacuolar R-SNARE Nyv1, which adopts a longin fold []. Vacuolar v-SNARE is required for docking and is only involved in homotypic vacuole fusion. Nyv1 is required for Ca(2+) efflux from the vacuolar lumen, a required signal for subsequent membrane fusion events, by inhibiting vacuolar Ca(2+)-ATPase PMC1 and promoting Ca(2+) release when forming trans-SNARE assemblies during the docking step. In yeast, the N-terminal domain of Nyv1 is sufficient to direct the transport of Nyv1 to limiting membrane of the vacuole []. ; PDB: 2FZ0_A.
Probab=82.95 E-value=3.5 Score=30.43 Aligned_cols=53 Identities=26% Similarity=0.370 Sum_probs=34.1
Q ss_pred HHhcCCCC-CCee---EEE-ECCeEEEEEE---eCCEEEEEEecCCcChhhHHHHHHHHHH
Q 027720 35 CLQKLPSS-NNKF---TYN-CDGHTFNYLV---DDGFTYCVVAVESVGRQVPIAFLERVKE 87 (219)
Q Consensus 35 il~~i~~~-~~k~---~~~-~~~~~~~~l~---~~~~~~~~v~d~~~~~~~af~fL~~i~~ 87 (219)
++.++-|- ..|. +.. .|||-.+|-. +++-+++|.+..+.|+-++...|.+++.
T Consensus 50 VlPkVV~v~GNKVTK~S~~lIDGyDCYYTT~~~d~~~vlVCFt~~~vPKILPiRlLSeLK~ 110 (141)
T PF09426_consen 50 VLPKVVPVEGNKVTKMSMHLIDGYDCYYTTEDNDDNKVLVCFTRVDVPKILPIRLLSELKG 110 (141)
T ss_dssp TGGG----SS-SSEE--S--SSSEEEEE---SS-TTEEEEEEEETTS-SSHHHHHHHHHTT
T ss_pred cccceEEccCCeEEEEEeecccccceeeecccCCCCeEEEEEEecCCcceecHHHHHhhcc
Confidence 45555443 2333 333 4899888876 4678999999999999999999999964
No 28
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=82.30 E-value=0.85 Score=34.39 Aligned_cols=36 Identities=25% Similarity=0.572 Sum_probs=24.0
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Q 027720 176 FRQQGTQMRRKMWFQNMKIKLIVLGIIIALILIIVLSVC 214 (219)
Q Consensus 176 f~~~s~~l~~~~~~~~~k~~iii~~vv~~~~~~i~~~~c 214 (219)
+++.-.+.||.. -.|+..+|.++||+++++|++.+|
T Consensus 120 LKkKEae~kr~K---~Cki~~Li~~~vc~~ilVivVpi~ 155 (159)
T PF06789_consen 120 LKKKEAELKRSK---VCKIFALIVLAVCAVILVIVVPIC 155 (159)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHheEEEEEEEE
Confidence 344444555554 346667777788888888888888
No 29
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=81.97 E-value=7.7 Score=24.70 Aligned_cols=50 Identities=14% Similarity=0.139 Sum_probs=33.1
Q ss_pred HhhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 027720 160 ELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVLGIIIALILII 209 (219)
Q Consensus 160 e~L~~ks~~L~~~s~~f~~~s~~l~~~~~~~~~k~~iii~~vv~~~~~~i 209 (219)
+.+.+...++-.++.++-+.++|=.|+-+++.-|...+..+++-++-|+|
T Consensus 4 ~~~~e~~~~f~~d~~rvl~~~~KPd~~Ef~~ia~~~~iG~~i~G~iGf~I 53 (61)
T PRK09400 4 NKLQENVKNFLEDYKRVLKVARKPTREEFLLVAKVTGLGILLIGLIGFII 53 (61)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666777778888888778888777776666555544444444
No 30
>PRK10884 SH3 domain-containing protein; Provisional
Probab=81.13 E-value=27 Score=28.02 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=9.3
Q ss_pred hhhhHHhhHHhhhhHHHHHH
Q 027720 155 RGEKIELLVDRTENLRSQAQ 174 (219)
Q Consensus 155 Rge~le~L~~ks~~L~~~s~ 174 (219)
+...++.|.+.-++|+.+-.
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~ 149 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLI 149 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555544433
No 31
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=80.75 E-value=16 Score=30.49 Aligned_cols=79 Identities=15% Similarity=0.254 Sum_probs=43.6
Q ss_pred hHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHH----HHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 027720 129 SKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLR----SQAQDFRQQGTQMRRKMWFQNMKIKLIVLGIIIA 204 (219)
Q Consensus 129 dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~----~~s~~f~~~s~~l~~~~~~~~~k~~iii~~vv~~ 204 (219)
..+..+..-+.|+..|.++==.-|.+-|+.+|.+...-++++ ..++.+.+.-..-||.-.|+-|- +++.+||++
T Consensus 195 ~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~--Llil~vv~l 272 (283)
T COG5325 195 EEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFYL--LLILLVVLL 272 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhhH--HHHHHHHHH
Confidence 355666666777777776655667889998888775544444 44455555333333333333332 223334444
Q ss_pred HHHHH
Q 027720 205 LILII 209 (219)
Q Consensus 205 ~~~~i 209 (219)
+++++
T Consensus 273 fv~l~ 277 (283)
T COG5325 273 FVSLI 277 (283)
T ss_pred HHHHH
Confidence 44444
No 32
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.02 E-value=9 Score=27.62 Aligned_cols=76 Identities=12% Similarity=0.194 Sum_probs=35.2
Q ss_pred hHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHH----hhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 027720 129 SKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVD----RTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVLGIIIA 204 (219)
Q Consensus 129 dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~----ks~~L~~~s~~f~~~s~~l~~~~~~~~~k~~iii~~vv~~ 204 (219)
..+..++++|.-.|..-.+--+++=....-||.+.+ -|.-|+..-..|+.-|++-.+ ..+.|.+++++|++
T Consensus 36 e~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~sg~-----~l~~~m~~f~lV~~ 110 (118)
T KOG3385|consen 36 EAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARRSGI-----SLLCWMAVFSLVAF 110 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhcCCc-----chHHHHHHHHHHHH
Confidence 566677777777776643322222222223333322 222234444445444444222 33456666666555
Q ss_pred HHHHH
Q 027720 205 LILII 209 (219)
Q Consensus 205 ~~~~i 209 (219)
+++.+
T Consensus 111 fi~~~ 115 (118)
T KOG3385|consen 111 FILWV 115 (118)
T ss_pred HHhhe
Confidence 54433
No 33
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=79.68 E-value=27 Score=31.21 Aligned_cols=39 Identities=10% Similarity=0.061 Sum_probs=17.2
Q ss_pred hhhhHHHHHhhhhhcCCchhhhHHHHHHHHhhhhhhhchhcH
Q 027720 108 KEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNI 149 (219)
Q Consensus 108 ~~f~~~l~~~~~~~~~~~~~~dkl~~i~~~v~~vk~im~~ni 149 (219)
.+|...+.+..+.. ++ ..+-+..+.++++.+...+..++
T Consensus 105 ~~~h~gV~~t~~si-~~--an~tv~~l~nqv~~l~~al~~t~ 143 (418)
T cd07912 105 DETHDGVVQLTYSL-RN--ANHTVAGIDNQTSDTEASLNVTV 143 (418)
T ss_pred HHHhhhHHHHHHHH-HH--HHHHHHHHHHHHHHHHHHHhhhh
Confidence 44544554444433 11 22444445555555554444444
No 34
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=77.74 E-value=14 Score=28.68 Aligned_cols=51 Identities=22% Similarity=0.365 Sum_probs=42.2
Q ss_pred hHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHHh
Q 027720 129 SKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQ 179 (219)
Q Consensus 129 dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~~ 179 (219)
.-..++..++++++.-|.+.|+++-..=++||.+..++..|+..+..+...
T Consensus 109 ~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~e 159 (171)
T PF04799_consen 109 STFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESE 159 (171)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688899999999999999999999999999888888888777766543
No 35
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.72 E-value=27 Score=28.64 Aligned_cols=22 Identities=9% Similarity=0.232 Sum_probs=8.9
Q ss_pred HHHHHHhhhhhhhchhcHHHHH
Q 027720 132 AKVKAQVSEVKGVMMDNIEKVL 153 (219)
Q Consensus 132 ~~i~~~v~~vk~im~~ni~~~l 153 (219)
...|+++-+=++...++|.+-+
T Consensus 140 ~~~qqqm~~eQDe~Ld~ls~ti 161 (235)
T KOG3202|consen 140 VQLQQQMLQEQDEGLDGLSATV 161 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443333
No 36
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=77.43 E-value=21 Score=24.73 Aligned_cols=27 Identities=7% Similarity=0.198 Sum_probs=15.9
Q ss_pred hHHHHHHHHhhhhhhhchhcHHHHHhhh
Q 027720 129 SKLAKVKAQVSEVKGVMMDNIEKVLDRG 156 (219)
Q Consensus 129 dkl~~i~~~v~~vk~im~~ni~~~l~Rg 156 (219)
+.+..-+...++|.+-|-.++|+ +.|.
T Consensus 28 ~~Ik~gq~~qe~v~~kld~tlD~-i~re 54 (98)
T PF11166_consen 28 DEIKDGQHDQELVNQKLDRTLDE-INRE 54 (98)
T ss_pred HHHHHhHhhHHHHHHHHHhhHHH-HHHH
Confidence 33444455566677777777777 4444
No 37
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=77.19 E-value=5.5 Score=27.56 Aligned_cols=12 Identities=17% Similarity=0.393 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHh
Q 027720 181 TQMRRKMWFQNM 192 (219)
Q Consensus 181 ~~l~~~~~~~~~ 192 (219)
|+-||+..|++.
T Consensus 6 kK~K~k~~l~~~ 17 (96)
T PF13800_consen 6 KKAKRKSRLRTV 17 (96)
T ss_pred HHHHHHHHHHHH
Confidence 444555555444
No 38
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=75.41 E-value=1.8 Score=29.92 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=16.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhc
Q 027720 191 NMKIKLIVLGIIIALILIIVLSVC 214 (219)
Q Consensus 191 ~~k~~iii~~vv~~~~~~i~~~~c 214 (219)
.||+++..++.+++++++|.+..|
T Consensus 40 ayWpyLA~GGG~iLilIii~Lv~C 63 (98)
T PF07204_consen 40 AYWPYLAAGGGLILILIIIALVCC 63 (98)
T ss_pred hhhHHhhccchhhhHHHHHHHHHH
Confidence 477888877766666666666666
No 39
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=74.96 E-value=20 Score=23.31 Aligned_cols=29 Identities=10% Similarity=0.320 Sum_probs=17.2
Q ss_pred hhHHhhHHhhhhHHHHHHHHHHhHHHHHHHH
Q 027720 157 EKIELLVDRTENLRSQAQDFRQQGTQMRRKM 187 (219)
Q Consensus 157 e~le~L~~ks~~L~~~s~~f~~~s~~l~~~~ 187 (219)
+|||.+++|-|. .+|.-|++..+++-|-.
T Consensus 19 ~rLd~iEeKVEf--~~~E~~Qr~Gkk~GRDi 47 (70)
T TIGR01149 19 KRLDEIEEKVEF--VNGEVAQRIGKKVGRDI 47 (70)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHhHHhhhHH
Confidence 445555555554 34566777777777653
No 40
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.86 E-value=42 Score=26.97 Aligned_cols=26 Identities=19% Similarity=0.499 Sum_probs=12.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Q 027720 184 RRKMWFQNMKIKLIVLGIIIALILII 209 (219)
Q Consensus 184 ~~~~~~~~~k~~iii~~vv~~~~~~i 209 (219)
.|++...++-.++||++.++++++++
T Consensus 190 ~RR~~~nk~~~~aii~~l~~~il~il 215 (220)
T KOG1666|consen 190 TRRLIRNKFTLTAIIALLVLAILLIL 215 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555445555555555444444443
No 41
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=74.44 E-value=32 Score=28.39 Aligned_cols=44 Identities=16% Similarity=0.225 Sum_probs=22.7
Q ss_pred hHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHH
Q 027720 129 SKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQ 172 (219)
Q Consensus 129 dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~ 172 (219)
+|+..++.-+++..+...+--+.--.+..+++.+..+-+.++..
T Consensus 192 ~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~ 235 (264)
T PF06008_consen 192 AKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQ 235 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555554444444444445555555555555555544
No 42
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=74.15 E-value=22 Score=27.64 Aligned_cols=105 Identities=13% Similarity=0.188 Sum_probs=56.8
Q ss_pred EEEEEecCCcChhhHHHHHHHHHHHHHhhhCCCCCcccc--cccchhhhhHHHHHhhhhhcCCchhhhHHHHHHHHhhhh
Q 027720 64 TYCVVAVESVGRQVPIAFLERVKEDFIKRYGGGKAATAV--ANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEV 141 (219)
Q Consensus 64 ~~~~v~d~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~--~~~~~~~f~~~l~~~~~~~~~~~~~~dkl~~i~~~v~~v 141 (219)
+|.|++-+- -....-.|++.+..++.+.+.+....... ..+ |...++.-++-. +.+.. -+-+.++
T Consensus 65 IF~~L~~~l-~~efl~~~~~~L~~~~~~~L~~p~~~d~~~W~LA----l~~a~~~~Iql~-e~~~~-------~~~vk~L 131 (174)
T PF04510_consen 65 IFICLPMPL-YGEFLIPFMENLLPEISKVLLPPEEVDVEDWVLA----LTGAVCMAIQLL-ESSMR-------VDLVKEL 131 (174)
T ss_pred HHHhCCchh-hhhHHHHHHHHHHHHHHHHcCCchhccHHHHHHH----HHHHHHHHHHHh-ccccH-------HHHHHHH
Confidence 456665333 45566778888888888876433211111 112 222333222222 11111 1223445
Q ss_pred hhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 027720 142 KGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQN 191 (219)
Q Consensus 142 k~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~~s~~l~~~~~~~~ 191 (219)
-..|.+.+.++++||...+-+.. .|+.=.+-+++.++|=+
T Consensus 132 ~~~mv~Sv~elV~~g~E~~~l~r----------gl~~~e~~v~~~~~~y~ 171 (174)
T PF04510_consen 132 LPKMVKSVKELVERGMEVGFLRR----------GLRDFESFVSRQMNWYK 171 (174)
T ss_pred HHHHHHHHHHHHHcccHHHHHHH----------HHHHHHHHHHHHHHHhh
Confidence 55599999999999987766653 34333456667777644
No 43
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=73.75 E-value=7.9 Score=26.76 Aligned_cols=21 Identities=5% Similarity=0.077 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q 027720 181 TQMRRKMWFQNMKIKLIVLGI 201 (219)
Q Consensus 181 ~~l~~~~~~~~~k~~iii~~v 201 (219)
+-+||..|+..++.+++..++
T Consensus 3 ~i~kK~K~k~~l~~~~isi~~ 23 (96)
T PF13800_consen 3 KILKKAKRKSRLRTVVISIIS 23 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHhh
Confidence 357788888888888666554
No 44
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=73.57 E-value=12 Score=23.59 Aligned_cols=10 Identities=20% Similarity=0.448 Sum_probs=5.9
Q ss_pred HHHHHHHHHh
Q 027720 170 RSQAQDFRQQ 179 (219)
Q Consensus 170 ~~~s~~f~~~ 179 (219)
.+.|.+|-++
T Consensus 8 nETA~~FL~R 17 (60)
T PF06072_consen 8 NETATEFLRR 17 (60)
T ss_pred cccHHHHHHH
Confidence 4556677654
No 45
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=72.87 E-value=23 Score=23.06 Aligned_cols=30 Identities=13% Similarity=0.338 Sum_probs=17.9
Q ss_pred hhhHHhhHHhhhhHHHHHHHHHHhHHHHHHHH
Q 027720 156 GEKIELLVDRTENLRSQAQDFRQQGTQMRRKM 187 (219)
Q Consensus 156 ge~le~L~~ks~~L~~~s~~f~~~s~~l~~~~ 187 (219)
.+|||.+++|-|. .+|.-+++..+|+-|-.
T Consensus 18 ~~rLd~iEeKvEf--~~~Ei~Qr~GkkiGRDi 47 (70)
T PF04210_consen 18 MKRLDEIEEKVEF--TNAEIAQRAGKKIGRDI 47 (70)
T ss_pred HHHHHHHHHHHHh--HHHHHHHHHhHHhhhHH
Confidence 4556666655554 34566777777777653
No 46
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=72.18 E-value=26 Score=23.33 Aligned_cols=29 Identities=17% Similarity=0.467 Sum_probs=17.4
Q ss_pred hhHHhhHHhhhhHHHHHHHHHHhHHHHHHHH
Q 027720 157 EKIELLVDRTENLRSQAQDFRQQGTQMRRKM 187 (219)
Q Consensus 157 e~le~L~~ks~~L~~~s~~f~~~s~~l~~~~ 187 (219)
+|||.+++|-|. .+|.-|++..+++-|-.
T Consensus 22 ~rLD~iEeKVEf--tn~Ei~Qr~GkkvGRDi 50 (77)
T PRK01026 22 KRLDEIEEKVEF--TNAEIFQRIGKKVGRDI 50 (77)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHhHHhhhHH
Confidence 445555555543 34566777777777653
No 47
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=71.31 E-value=38 Score=24.92 Aligned_cols=48 Identities=21% Similarity=0.323 Sum_probs=42.6
Q ss_pred EEEECCeEEEEEEeCCEEEEEEecCCcChhhHHHHHHHHHHHHHhhhC
Q 027720 47 TYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFIKRYG 94 (219)
Q Consensus 47 ~~~~~~~~~~~l~~~~~~~~~v~d~~~~~~~af~fL~~i~~~f~~~~~ 94 (219)
.+.++++.+-|...+++.++++++.+...-....||..+.+.+..-++
T Consensus 49 i~~~~~~~~vy~~~~dl~~~~v~~~~eNel~~~e~l~~~v~~l~~~~~ 96 (141)
T PF01217_consen 49 IFEHDNYRIVYKRYSDLYFVVVGDENENELLLLEFLHRLVEVLDDYFG 96 (141)
T ss_dssp EEEETTEEEEEEEETTEEEEEEESSTSBHHHHHHHHHHHHHHHHHHHS
T ss_pred eeecccceeeeEeeccEEEEEEeecccchHHHHHHHHHhhhhhhhhhc
Confidence 577899999888889999999999999998999999999988887664
No 48
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=69.35 E-value=3 Score=25.46 Aligned_cols=12 Identities=33% Similarity=0.922 Sum_probs=6.4
Q ss_pred HHHHHhcC-----CCCC
Q 027720 208 IIVLSVCG-----GFNC 219 (219)
Q Consensus 208 ~i~~~~c~-----gf~c 219 (219)
++.+++|. |++|
T Consensus 15 lLg~~I~~~~K~ygYkh 31 (50)
T PF12606_consen 15 LLGLSICTTLKAYGYKH 31 (50)
T ss_pred HHHHHHHHHhhcccccc
Confidence 33455662 6666
No 49
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=68.88 E-value=22 Score=28.81 Aligned_cols=20 Identities=5% Similarity=0.046 Sum_probs=12.1
Q ss_pred HHhhhhHHHHHHHHHHhHHH
Q 027720 163 VDRTENLRSQAQDFRQQGTQ 182 (219)
Q Consensus 163 ~~ks~~L~~~s~~f~~~s~~ 182 (219)
.+.++.|...|...++.+++
T Consensus 193 D~N~~~L~~~Serve~y~ks 212 (244)
T KOG2678|consen 193 DVNSQGLMDVSERVEKYDKS 212 (244)
T ss_pred hHHHHHHHhhhHHHHHHHHh
Confidence 34556666666666666544
No 50
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=68.79 E-value=39 Score=27.77 Aligned_cols=12 Identities=0% Similarity=0.393 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHh
Q 027720 80 AFLERVKEDFIK 91 (219)
Q Consensus 80 ~fL~~i~~~f~~ 91 (219)
.+-.+++++...
T Consensus 113 ~~~~eLR~~ll~ 124 (251)
T PF09753_consen 113 RYTSELRKRLLS 124 (251)
T ss_pred hhhHHHHhhhcc
Confidence 344566665544
No 51
>PF06837 Fijivirus_P9-2: Fijivirus P9-2 protein; InterPro: IPR009650 This family consists of several Fijivirus specific P9-2 proteins from Rice black streaked dwarf virus (RBSDV) and Fiji disease virus. The function of this family is unknown.
Probab=67.63 E-value=7.7 Score=30.38 Aligned_cols=37 Identities=27% Similarity=0.464 Sum_probs=21.3
Q ss_pred HHHHhhhhhhhchh--cHHHHHhhhhhHHhhHHhhhhHH
Q 027720 134 VKAQVSEVKGVMMD--NIEKVLDRGEKIELLVDRTENLR 170 (219)
Q Consensus 134 i~~~v~~vk~im~~--ni~~~l~Rge~le~L~~ks~~L~ 170 (219)
.|-+++.++.+|.+ |-+.+++|.-.=.+|.++-++|.
T Consensus 21 aKiq~~~~k~~m~d~snf~~ife~~~sdse~Dd~vd~lE 59 (214)
T PF06837_consen 21 AKIQIESIKPIMQDFSNFDEIFERPLSDSELDDKVDKLE 59 (214)
T ss_pred HHHHHHhhhHHHHhccchHHHHcccCcchhHHHHHHHHh
Confidence 44456677777776 77888876433333333444443
No 52
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.04 E-value=63 Score=27.28 Aligned_cols=43 Identities=19% Similarity=0.286 Sum_probs=27.5
Q ss_pred hHHHHHHHHhhhhhhhchhcHHHHHhhhhh---HHhhHHhhhhHHH
Q 027720 129 SKLAKVKAQVSEVKGVMMDNIEKVLDRGEK---IELLVDRTENLRS 171 (219)
Q Consensus 129 dkl~~i~~~v~~vk~im~~ni~~~l~Rge~---le~L~~ks~~L~~ 171 (219)
..+..++..+.|+=+|+.+=-..+=+-||- ||+.++.++-.-+
T Consensus 227 ~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~ 272 (311)
T KOG0812|consen 227 KTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIE 272 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhH
Confidence 566777888888888887755556666664 4555554444433
No 53
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=66.47 E-value=94 Score=27.63 Aligned_cols=8 Identities=13% Similarity=0.115 Sum_probs=3.2
Q ss_pred HHhcCCCC
Q 027720 211 LSVCGGFN 218 (219)
Q Consensus 211 ~~~c~gf~ 218 (219)
++.|+.-+
T Consensus 205 ~glar~Sk 212 (406)
T PF04906_consen 205 LGLARQSK 212 (406)
T ss_pred HHHHhcCc
Confidence 34443333
No 54
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=65.98 E-value=25 Score=22.39 Aligned_cols=44 Identities=11% Similarity=0.024 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 027720 167 ENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVLGIIIALILIIV 210 (219)
Q Consensus 167 ~~L~~~s~~f~~~s~~l~~~~~~~~~k~~iii~~vv~~~~~~i~ 210 (219)
.+.-.++.++-+.++|=.|+-+++..+...+..+++-++-|+|-
T Consensus 7 ~~f~k~~~r~lk~~~KPd~~Ef~~iak~t~iG~~i~G~IGf~Ik 50 (61)
T TIGR00327 7 VEFIKEGTRVLAVCKKPDLEEYLKVAKVTGIGIIIVGIIGYIIK 50 (61)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667777888888888888888877666555544444443
No 55
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=65.87 E-value=8.6 Score=37.62 Aligned_cols=30 Identities=17% Similarity=0.424 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 027720 182 QMRRKMWFQNMKIKLIVLGIIIALILIIVL 211 (219)
Q Consensus 182 ~l~~~~~~~~~k~~iii~~vv~~~~~~i~~ 211 (219)
|-=++..|+.|+++|++.+++++++++.++
T Consensus 1060 K~~~~i~W~~yr~~il~~l~ililll~l~~ 1089 (1105)
T KOG1326|consen 1060 KSFKFILWHRYRWYILLLLLILILLLLLAL 1089 (1105)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334678999999999887766655544443
No 56
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=65.35 E-value=32 Score=21.72 Aligned_cols=48 Identities=13% Similarity=0.257 Sum_probs=40.3
Q ss_pred hhHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHH
Q 027720 128 ISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQD 175 (219)
Q Consensus 128 ~dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~ 175 (219)
.+.+.....-++++.++-.+.++.+-.-++.|....++..++...-..
T Consensus 7 ~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~ 54 (66)
T PF12352_consen 7 SDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPK 54 (66)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 378888899999999999999999999999999888888887766443
No 57
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.30 E-value=59 Score=27.74 Aligned_cols=45 Identities=22% Similarity=0.542 Sum_probs=27.0
Q ss_pred hHHHHHHHHhhh---hhhhchhcHHHHHhhhhhHHhhHH----hhhhHHHHHHHH
Q 027720 129 SKLAKVKAQVSE---VKGVMMDNIEKVLDRGEKIELLVD----RTENLRSQAQDF 176 (219)
Q Consensus 129 dkl~~i~~~v~~---vk~im~~ni~~~l~Rge~le~L~~----ks~~L~~~s~~f 176 (219)
|.+.+++..+-| .+++|. ++|++-.++||.+.+ -++++++.-...
T Consensus 232 devrqie~~lvEI~~Lq~ifs---ehvl~Q~~~Id~I~d~~~~~teNIk~gNe~i 283 (316)
T KOG3894|consen 232 DEVRQIEKRLVEISALQDIFS---EHVLQQDQNIDLIHDLQSGATENIKDGNEEI 283 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcccchhhhhhhHHHH
Confidence 556666655544 444443 567888889988887 344454443333
No 58
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=65.07 E-value=57 Score=31.75 Aligned_cols=22 Identities=27% Similarity=0.626 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 027720 194 IKLIVLGIIIALILIIVLSVCG 215 (219)
Q Consensus 194 ~~iii~~vv~~~~~~i~~~~c~ 215 (219)
+-.++.+|+++.++.++.+.||
T Consensus 420 l~~~llLIv~~~~lGLl~G~~G 441 (806)
T PF05478_consen 420 LCCVLLLIVLCLLLGLLCGCCG 441 (806)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 3334455666777777778887
No 59
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=64.28 E-value=16 Score=20.46 Aligned_cols=20 Identities=15% Similarity=0.536 Sum_probs=12.6
Q ss_pred HHHHHHhHHHHHHHHHHHHH
Q 027720 186 KMWFQNMKIKLIVLGIIIAL 205 (219)
Q Consensus 186 ~~~~~~~k~~iii~~vv~~~ 205 (219)
+.|-||...-+.+.+|+++.
T Consensus 17 qkwirnit~cfal~vv~lvs 36 (40)
T PF13124_consen 17 QKWIRNITFCFALLVVVLVS 36 (40)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57888887666655444433
No 60
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=63.32 E-value=8.3 Score=26.10 Aligned_cols=6 Identities=67% Similarity=0.899 Sum_probs=2.3
Q ss_pred HHHHHH
Q 027720 193 KIKLIV 198 (219)
Q Consensus 193 k~~iii 198 (219)
|.++++
T Consensus 5 kii~ii 10 (85)
T PF11337_consen 5 KIILII 10 (85)
T ss_pred HHHHHH
Confidence 333333
No 61
>KOG3498 consensus Preprotein translocase, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.34 E-value=36 Score=21.87 Aligned_cols=42 Identities=19% Similarity=0.272 Sum_probs=24.7
Q ss_pred hHHhhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHH
Q 027720 158 KIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVL 199 (219)
Q Consensus 158 ~le~L~~ks~~L~~~s~~f~~~s~~l~~~~~~~~~k~~iii~ 199 (219)
+++.+.+-+.+...+|.+|.++.+|=-|+-+-+-.+-..+-.
T Consensus 3 ~~~~~~~~~~~f~k~s~rf~krC~KPdrKEf~ki~~~~aiGf 44 (67)
T KOG3498|consen 3 QVDQLVEPLRDFAKDSIRFVKRCTKPDRKEFTKIAKATAIGF 44 (67)
T ss_pred hHHHhcchHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 345555555666666667777666666666655555444433
No 62
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=61.78 E-value=36 Score=21.08 Aligned_cols=44 Identities=18% Similarity=0.336 Sum_probs=34.6
Q ss_pred hHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHH
Q 027720 129 SKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQ 172 (219)
Q Consensus 129 dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~ 172 (219)
+.+..+.+.+.+++++..+==+.+-+-++-|+.+.+..+.-...
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~ 47 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANEN 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHH
Confidence 67888999999999988776677778888889888776665544
No 63
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.71 E-value=84 Score=25.31 Aligned_cols=61 Identities=18% Similarity=0.300 Sum_probs=35.4
Q ss_pred cHHHHHhhhhh-HHhhHHhhhhHHHHHHHHHHhHH----------HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 027720 148 NIEKVLDRGEK-IELLVDRTENLRSQAQDFRQQGT----------QMRRKMWFQNMKIKLIVLGIIIALILIIV 210 (219)
Q Consensus 148 ni~~~l~Rge~-le~L~~ks~~L~~~s~~f~~~s~----------~l~~~~~~~~~k~~iii~~vv~~~~~~i~ 210 (219)
-+|.+|++|.. +|+|+++=..|+..-+.+..-++ -+.|+. +.=|+++++|+++|+++++.+
T Consensus 137 ~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~--~~Dk~iF~~G~i~~~v~~yl~ 208 (213)
T KOG3251|consen 137 MLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRV--REDKIIFYGGVILTLVIMYLF 208 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHH
Confidence 45677777754 57777777777766555554322 222222 233667777777666654443
No 64
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=60.82 E-value=67 Score=26.06 Aligned_cols=26 Identities=4% Similarity=-0.007 Sum_probs=13.9
Q ss_pred HHHHHHHhHHHHHHHHHHH-HhHHHHH
Q 027720 172 QAQDFRQQGTQMRRKMWFQ-NMKIKLI 197 (219)
Q Consensus 172 ~s~~f~~~s~~l~~~~~~~-~~k~~ii 197 (219)
++....-.|-+++++..-+ .+|+++.
T Consensus 195 N~~~L~~~Serve~y~ksk~s~wf~~~ 221 (244)
T KOG2678|consen 195 NSQGLMDVSERVEKYDKSKLSYWFYIT 221 (244)
T ss_pred HHHHHHhhhHHHHHHHHhhhhHHHHHH
Confidence 3444555566777766555 4444433
No 65
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.51 E-value=25 Score=29.63 Aligned_cols=42 Identities=12% Similarity=0.270 Sum_probs=30.8
Q ss_pred hHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHH
Q 027720 129 SKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLR 170 (219)
Q Consensus 129 dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~ 170 (219)
..+.++-+-+.|+..++.+==..|.+-|--+|.+.-.-|+-+
T Consensus 218 ~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~ 259 (305)
T KOG0809|consen 218 KEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQ 259 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhh
Confidence 457777788888888888877888899977776654444433
No 66
>PF01099 Uteroglobin: Uteroglobin family; InterPro: IPR006038 Uteroglobin (or blastokinin) is a mammalian steroid-inducible secreted protein originally isolated from the uterus of rabbits during early pregnancy. The mucosal epithelia of several organs that communicate with the external environment express uteroglobin. Its tissue-specific expression is regulated by steroid hormones, and is augmented in the uterus by non-steroidal prolactin. Uteroglobin may be a multi-functional protein with anti-inflammatory/immunomodulatory properties, acting to inhibit phospholipase A2 activity, and binding to (and possibly sequestering) several hydrophobic ligands such as progesterone, retinols, polychlorinated biphenyls, phospholipids and prostaglandins. In addition, uteroglobin has anti-chemotactic, anti-allergic, anti-tumourigenic and embryo growth-stimulatory properties. Uteroglobin may have a homeostatic role against oxidative damage, inflammation, autoimmunity and cancer [, , , ]. Uteroglobin consists of a disulphide-linked dimer of two identical polypeptides, each polypeptide being composed of four helices. It is a member of the secretoglobin superfamily. This entry represents uteroglobin proteins from several mammalian species, as well as other members of the secretoglobin superfamily, such as lipophilin B [], prostatic steroid-binding protein [], mammaglobin [], and the related allergen Fel d 1 (Felis domesticus allergen 1) [].; GO: 0005488 binding, 0005576 extracellular region; PDB: 1UTR_B 1CCD_A 1UTG_A 2UTG_A 1ZKR_B 1PUO_B 2EJN_B.
Probab=59.85 E-value=17 Score=23.43 Aligned_cols=43 Identities=26% Similarity=0.356 Sum_probs=29.5
Q ss_pred HHHHhhhhhcCCchhhhHHHHHHHHhhhhhhhchhcHHHHHhh
Q 027720 113 KLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDR 155 (219)
Q Consensus 113 ~l~~~~~~~~~~~~~~dkl~~i~~~v~~vk~im~~ni~~~l~R 155 (219)
..+..++.|+.+|...+...++++-+++...-=+.|+.++|++
T Consensus 18 ~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~~ 60 (67)
T PF01099_consen 18 EYKESLQKYNPPPEAVEAKLELKQCVDKLSNETRENILKLLEK 60 (67)
T ss_dssp HHHHHHHCC---HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4455667777777777888889988888887777888777754
No 67
>smart00096 UTG Uteroglobin.
Probab=59.54 E-value=21 Score=23.33 Aligned_cols=40 Identities=15% Similarity=0.220 Sum_probs=30.1
Q ss_pred HhhhhhcCCchhhhHHHHHHHHhhhhhhhchhcHHHHHhh
Q 027720 116 EHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDR 155 (219)
Q Consensus 116 ~~~~~~~~~~~~~dkl~~i~~~v~~vk~im~~ni~~~l~R 155 (219)
..++.|+.+|+-.+...++++=+|....-=+.||-+++++
T Consensus 23 ~~l~~y~~~~~~~ea~~~lK~cvD~L~~~~k~~i~~ll~k 62 (69)
T smart00096 23 ASLKQFKPDPDMLEAGRQLKKLVDTLPQETRENILKLTEK 62 (69)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3446777788777888888888888777777777777654
No 68
>PHA02690 hypothetical protein; Provisional
Probab=58.34 E-value=53 Score=21.97 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=21.0
Q ss_pred HhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 027720 178 QQGTQMRRKMWFQNMKIKLIVLGIIIALILIIV 210 (219)
Q Consensus 178 ~~s~~l~~~~~~~~~k~~iii~~vv~~~~~~i~ 210 (219)
..|+-+-|++|.=-+-+.+.+.++.++++=.+|
T Consensus 32 Egs~plLR~~~RlLfDL~lTvfV~myiv~Rl~~ 64 (90)
T PHA02690 32 EGSTPLLRQMWRLLFDLLLTVFVVMYIVFRLIW 64 (90)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677776666666666666666655555
No 69
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.18 E-value=1e+02 Score=24.95 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=10.2
Q ss_pred HHhHHHHHHHH--HHHHHHHHHHH
Q 027720 190 QNMKIKLIVLG--IIIALILIIVL 211 (219)
Q Consensus 190 ~~~k~~iii~~--vv~~~~~~i~~ 211 (219)
|+-|=.+|+++ .+|.+++++|+
T Consensus 206 kkrrdslILa~Vis~C~llllfy~ 229 (231)
T KOG3208|consen 206 KKRRDSLILAAVISVCTLLLLFYW 229 (231)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33343444443 45555555544
No 70
>COG1969 HyaC Ni,Fe-hydrogenase I cytochrome b subunit [Energy production and conversion]
Probab=56.50 E-value=11 Score=30.00 Aligned_cols=37 Identities=27% Similarity=0.521 Sum_probs=26.1
Q ss_pred HHHHHHHHHH----HhHHHHHH--------------HHHHHHHHHHHHHHhcCCC
Q 027720 181 TQMRRKMWFQ----NMKIKLIV--------------LGIIIALILIIVLSVCGGF 217 (219)
Q Consensus 181 ~~l~~~~~~~----~~k~~iii--------------~~vv~~~~~~i~~~~c~gf 217 (219)
..+.++.||+ ..|+|+.+ .+......+.|++++|.||
T Consensus 96 ~~fw~k~w~eg~~~~ik~Ylfl~kkPh~~~~~NPia~~AyFf~~lmiv~MiltGf 150 (227)
T COG1969 96 VPFWRKAWWEGVWYQIKWYLFLGKKPHTKGGHNPIAQVAYFFYFLMIVFMILTGF 150 (227)
T ss_pred hhhhHHHHHHHHHHHhhhheeecCCCccccccCHHHHHHHHHHHHHHHHHHHHhH
Confidence 4677999999 88988875 2233344456667888887
No 71
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=56.28 E-value=92 Score=25.33 Aligned_cols=21 Identities=14% Similarity=0.422 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCC
Q 027720 197 IVLGIIIALILIIVLSVCGGF 217 (219)
Q Consensus 197 ii~~vv~~~~~~i~~~~c~gf 217 (219)
+.+..+++++|+.++.+-|+|
T Consensus 154 i~aml~Vf~LF~lvmt~g~d~ 174 (230)
T PF03904_consen 154 IGAMLFVFMLFALVMTIGSDF 174 (230)
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 333344444455555444443
No 72
>cd00633 Secretoglobin Secretoglobins are relatively small, secreted, disulphide-bridged dimeric proteins with encoding genes sharing substantial sequence similarity. Their family subunits may be grouped into five subfamilies, A-E. Uteroglobin (subfamily A), which is identical to Clara cell protein (CC10), forms a globular shaped homodimer with a large hydrophobic pocket located between the two dimers. The uteroglobin monomer structure is composed of four alpha helices that do not form a canonical four helix-bundle motif but rather a boomerang-shaped structure in which helices H1, H3, and H4 are able to bind a homodimeric partner. The hydrophobic pocket binds steroids, particularly progesterone, with high specificity. However, the true biological function of uteroglobin is poorly understood. In mammals, uteroglobin has immunosuppressive and anti-inflammatory properties through the inhibition of phospholipase A2. The other four main subfamilies of secretoglobins are found in heterodimeri
Probab=56.14 E-value=26 Score=22.45 Aligned_cols=42 Identities=26% Similarity=0.324 Sum_probs=30.8
Q ss_pred HHHHhhhhhcCCchhhhHHHHHHHHhhhhhhhchhcHHHHHh
Q 027720 113 KLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLD 154 (219)
Q Consensus 113 ~l~~~~~~~~~~~~~~dkl~~i~~~v~~vk~im~~ni~~~l~ 154 (219)
.+...++.||.+|...+...++|+=+++....=+.|+-++|+
T Consensus 18 ~y~~~L~~f~~~~~~~~A~~~lK~C~d~~~~e~k~~~~~~m~ 59 (67)
T cd00633 18 EYKAELEKFNATPEAVEAKEKLKQCVDEQSLETKENIAKLLE 59 (67)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Confidence 455666788788888788888888888876666666666654
No 73
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=55.91 E-value=94 Score=24.04 Aligned_cols=26 Identities=15% Similarity=0.337 Sum_probs=19.6
Q ss_pred hHHHHHHHHhhhhhhhchhcHHHHHh
Q 027720 129 SKLAKVKAQVSEVKGVMMDNIEKVLD 154 (219)
Q Consensus 129 dkl~~i~~~v~~vk~im~~ni~~~l~ 154 (219)
....+++.+++.+++-+.+-|+++-.
T Consensus 80 ~~~e~L~~eie~l~~~L~~ei~~l~a 105 (177)
T PF07798_consen 80 SENEKLQREIEKLRQELREEINKLRA 105 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888888888877543
No 74
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.74 E-value=1e+02 Score=24.95 Aligned_cols=60 Identities=10% Similarity=0.136 Sum_probs=40.2
Q ss_pred hchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHHhHHHH-----HHHHHHHHhHHHHHHHHHHH
Q 027720 144 VMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQM-----RRKMWFQNMKIKLIVLGIII 203 (219)
Q Consensus 144 im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~~s~~l-----~~~~~~~~~k~~iii~~vv~ 203 (219)
.+.-+++.+.++-+++..-..++..++.-+..+..+=+.| .|--||.-.-...+|++.++
T Consensus 150 ~Ld~kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaRDr~L~esNf~rVN~WS~vq~~vmi~v~~i 214 (236)
T KOG3287|consen 150 QLDVKLDDIEDSIGTIKNNLNKMWQYQALLRAREARDRNLQESNFDRVNFWSMVQTLVMILVGII 214 (236)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcccchhhHHHHHHHHHHHHHhhh
Confidence 4444777777888888888888888887777666554443 45568887776666554433
No 75
>PRK10884 SH3 domain-containing protein; Provisional
Probab=55.53 E-value=1.1e+02 Score=24.57 Aligned_cols=10 Identities=0% Similarity=-0.074 Sum_probs=3.9
Q ss_pred HHhhhhHHHH
Q 027720 163 VDRTENLRSQ 172 (219)
Q Consensus 163 ~~ks~~L~~~ 172 (219)
.+.-+.++..
T Consensus 145 ~~~l~~~~~~ 154 (206)
T PRK10884 145 KNQLIVAQKK 154 (206)
T ss_pred HHHHHHHHHH
Confidence 3333444433
No 76
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=55.43 E-value=7.8 Score=34.28 Aligned_cols=13 Identities=15% Similarity=0.358 Sum_probs=10.8
Q ss_pred HHHHHHHHHhcCC
Q 027720 204 ALILIIVLSVCGG 216 (219)
Q Consensus 204 ~~~~~i~~~~c~g 216 (219)
+|-|+-||++|+|
T Consensus 383 lvGfLcWwf~crg 395 (397)
T PF03302_consen 383 LVGFLCWWFICRG 395 (397)
T ss_pred HHHHHhhheeecc
Confidence 4558899999987
No 77
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=54.06 E-value=22 Score=23.56 Aligned_cols=18 Identities=39% Similarity=1.095 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 027720 197 IVLGIIIALILIIVLSVC 214 (219)
Q Consensus 197 ii~~vv~~~~~~i~~~~c 214 (219)
++++++++++++++..+|
T Consensus 6 ~~~g~~~ll~~v~~~~~~ 23 (75)
T PF14575_consen 6 IIVGVLLLLVLVIIVIVC 23 (75)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhheeEEEE
Confidence 333344444444445555
No 78
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=53.95 E-value=70 Score=24.68 Aligned_cols=11 Identities=18% Similarity=0.413 Sum_probs=7.1
Q ss_pred HHHHHHHHHHH
Q 027720 80 AFLERVKEDFI 90 (219)
Q Consensus 80 ~fL~~i~~~f~ 90 (219)
.||+++++...
T Consensus 5 efL~~L~~~L~ 15 (181)
T PF08006_consen 5 EFLNELEKYLK 15 (181)
T ss_pred HHHHHHHHHHH
Confidence 56777766654
No 79
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=53.04 E-value=2.3 Score=39.11 Aligned_cols=51 Identities=14% Similarity=0.179 Sum_probs=10.7
Q ss_pred HhhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 027720 160 ELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVLGIIIALILIIVL 211 (219)
Q Consensus 160 e~L~~ks~~L~~~s~~f~~~s~~l~~~~~~~~~k~~iii~~vv~~~~~~i~~ 211 (219)
+.|.+--++|.+.=-+.++=. +++...-|--|-|.+|++++++++++++|.
T Consensus 518 ~~Lq~~I~~LN~tlVdLe~Ln-~~e~YiKWPWyVWL~i~~~li~~~~~l~~~ 568 (610)
T PF01601_consen 518 DELQEVIDNLNNTLVDLEWLN-RYETYIKWPWYVWLAIILALIAFALILLWC 568 (610)
T ss_dssp HHHHHHHHHHHCCHHHCCHHT-TCCCHH------------------------
T ss_pred HHHHHHHHHhhhhheeHHHhc-ceeEEeehHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455554444433311 222233333333344444344444444443
No 80
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain. In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].
Probab=51.99 E-value=1e+02 Score=27.45 Aligned_cols=67 Identities=9% Similarity=0.118 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcCCCC-CCeeEEEECCeEEEEEEeCCEEEEEEecCCcChhhHHHHHHHHHHHHHhhhC
Q 027720 28 FTGIAAQCLQKLPSS-NNKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFIKRYG 94 (219)
Q Consensus 28 ~~~~a~~il~~i~~~-~~k~~~~~~~~~~~~l~~~~~~~~~v~d~~~~~~~af~fL~~i~~~f~~~~~ 94 (219)
+-.+.+.++.-.... +.-.++..++..|.|+..+++.++||+..+-+......-|+-+.....+..+
T Consensus 37 ~~g~~~aiiS~~~~~~d~l~~i~~~~~~ivfl~r~pl~lv~vS~~~e~~~~l~~qL~~ly~qils~lt 104 (415)
T PF03164_consen 37 LMGVIQAIISFFQSNGDELRSIRAGDHRIVFLNRGPLILVAVSKTGESESQLRKQLDYLYSQILSILT 104 (415)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCCEEEEEEecCCEEEEEEcCCcCCHHHHHHHHHHHHHHHHHhcc
Confidence 334445555443322 4445778899999999999999999999999988888888888877766554
No 81
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=51.40 E-value=55 Score=24.69 Aligned_cols=48 Identities=17% Similarity=0.343 Sum_probs=22.9
Q ss_pred hhhHHHHHhhhhhcC-CchhhhHHHHHHHHhhhhhhhchhcHHHHHhhhh
Q 027720 109 EFGPKLKEHMQYCID-HPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGE 157 (219)
Q Consensus 109 ~f~~~l~~~~~~~~~-~~~~~dkl~~i~~~v~~vk~im~~ni~~~l~Rge 157 (219)
.|++.++++...-+. .|. .+.+...+.+++.-..-..+-+.+.|++|+
T Consensus 31 ~fk~~l~~L~sTl~~i~P~-i~eI~~~~~eld~~~~ee~e~L~~~L~~g~ 79 (147)
T PF05659_consen 31 SFKSILKRLESTLESIIPI-IKEIDKLNVELDRPRQEEIERLKELLEKGK 79 (147)
T ss_pred hhhhHHHHHHHHHHHhhhH-HHHHHHHhhhcCCchhHHHHHHHHHHHHHH
Confidence 455555544432211 132 255666666666654444444555555554
No 82
>PF00482 T2SF: Type II secretion system (T2SS), protein F; InterPro: IPR018076 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) [], have been found to be evolutionary related. These are proteins of about 400 amino acids that are highly hydrophobic and which are thought to be integral protein of the inner membrane. Proteins with this domain form a platform for the type II secretion machinery, as well as the type IV pili and the archaeal flagellae [].; PDB: 2VMA_A 3C1Q_A 2VMB_B 2WHN_B.
Probab=51.38 E-value=37 Score=23.42 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=9.0
Q ss_pred hhHHHHHHHHHHhH-HHHHHHHHHHHhHHHHHHHHH
Q 027720 167 ENLRSQAQDFRQQG-TQMRRKMWFQNMKIKLIVLGI 201 (219)
Q Consensus 167 ~~L~~~s~~f~~~s-~~l~~~~~~~~~k~~iii~~v 201 (219)
+.|+..+..+.++. .+.++..-|-+.+..++++++
T Consensus 78 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (124)
T PF00482_consen 78 EVLEQLADQLRERERLRIKRAAELIEPLILIIVGAL 113 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555444432 223333333344444444333
No 83
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.23 E-value=37 Score=27.02 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=27.1
Q ss_pred HHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHHhHHHHHHHH
Q 027720 136 AQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKM 187 (219)
Q Consensus 136 ~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~~s~~l~~~~ 187 (219)
+++..+|..|.|==+-++++=|++-+--+|-|=|-+.+...+.++...|.+-
T Consensus 125 d~lskvkaqv~evk~vM~eNIekvldRGekiELLVdKTenl~~~s~~fr~q~ 176 (217)
T KOG0859|consen 125 SKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSKSFDFRTQG 176 (217)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEeeechhhhhhhhhHHHHHHH
Confidence 4455555555543333444444433333333444577777777776666443
No 84
>PHA02844 putative transmembrane protein; Provisional
Probab=49.71 E-value=16 Score=24.12 Aligned_cols=15 Identities=13% Similarity=0.135 Sum_probs=6.1
Q ss_pred hHHHHHHHHHHHHHH
Q 027720 192 MKIKLIVLGIIIALI 206 (219)
Q Consensus 192 ~k~~iii~~vv~~~~ 206 (219)
+.+++++..++++++
T Consensus 49 ~~~ii~i~~v~~~~~ 63 (75)
T PHA02844 49 KIWILTIIFVVFATF 63 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 85
>PHA02557 22 prohead core protein; Provisional
Probab=49.12 E-value=65 Score=26.85 Aligned_cols=94 Identities=17% Similarity=0.261 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHhhhCCCCCcccccccchhhhhHHHHHhh-hhhcCCch-hhhHHHHHHHHhhhhhhhchhcHHHHHhh
Q 027720 78 PIAFLERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHM-QYCIDHPE-EISKLAKVKAQVSEVKGVMMDNIEKVLDR 155 (219)
Q Consensus 78 af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~~f~~~l~~~~-~~~~~~~~-~~dkl~~i~~~v~~vk~im~~ni~~~l~R 155 (219)
+-.||+.+-++|..... ..........+...|-..|+++. .++..-|+ ..|-+..+..++++...-...-++...+.
T Consensus 89 vd~~l~~~~~eW~~ENk-~Av~~~IKaem~Es~l~GLK~lF~Ehnv~vpee~vdvV~em~~~L~E~e~~~~~l~~en~~l 167 (271)
T PHA02557 89 ADKYLDHLAKEWLAENK-LAVDRGIKAELFESFLGGLKELFVEHNVVVPEEKVDVVAEMEEELDEMEEELNELFEENVAL 167 (271)
T ss_pred HHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHhCcCCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55699999999987642 11222333344455656677766 44434454 35788899999998888888888777777
Q ss_pred hhhHHh------hHHhhhhHHHH
Q 027720 156 GEKIEL------LVDRTENLRSQ 172 (219)
Q Consensus 156 ge~le~------L~~ks~~L~~~ 172 (219)
.+.++. +.+-|.+|.+.
T Consensus 168 ~e~i~~~~r~~i~~e~t~gLtds 190 (271)
T PHA02557 168 EEYINEVKREVILSEVTKDLTES 190 (271)
T ss_pred HHHHHHHHHHHHHHHHHcchhHH
Confidence 776654 34455566544
No 86
>PHA02650 hypothetical protein; Provisional
Probab=49.11 E-value=24 Score=23.58 Aligned_cols=18 Identities=22% Similarity=0.755 Sum_probs=7.1
Q ss_pred HHHHHhHHHHHHHHHHHH
Q 027720 187 MWFQNMKIKLIVLGIIIA 204 (219)
Q Consensus 187 ~~~~~~k~~iii~~vv~~ 204 (219)
.||..+.+++++..++++
T Consensus 45 ~~~~~~~~ii~i~~v~i~ 62 (81)
T PHA02650 45 SWFNGQNFIFLIFSLIIV 62 (81)
T ss_pred CCchHHHHHHHHHHHHHH
Confidence 344333444444333333
No 87
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=48.51 E-value=19 Score=30.28 Aligned_cols=17 Identities=24% Similarity=0.469 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027720 195 KLIVLGIIIALILIIVL 211 (219)
Q Consensus 195 ~iii~~vv~~~~~~i~~ 211 (219)
+++++++|++++++||+
T Consensus 266 lvllil~vvliiLYiWl 282 (295)
T TIGR01478 266 LVLIILTVVLIILYIWL 282 (295)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455566666777776
No 88
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=48.51 E-value=28 Score=19.90 Aligned_cols=7 Identities=14% Similarity=0.890 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 027720 197 IVLGIII 203 (219)
Q Consensus 197 ii~~vv~ 203 (219)
|+++|++
T Consensus 8 IIv~V~v 14 (38)
T PF02439_consen 8 IIVAVVV 14 (38)
T ss_pred HHHHHHH
Confidence 3443333
No 89
>COG5547 Small integral membrane protein [Function unknown]
Probab=48.09 E-value=26 Score=21.99 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=12.3
Q ss_pred HHHHhHHHHHHHHHHHHHH
Q 027720 188 WFQNMKIKLIVLGIIIALI 206 (219)
Q Consensus 188 ~~~~~k~~iii~~vv~~~~ 206 (219)
|.+.+|+-++-+++.+++.
T Consensus 3 flk~fkypIIgglvglliA 21 (62)
T COG5547 3 FLKKFKYPIIGGLVGLLIA 21 (62)
T ss_pred HHHHhccchHHHHHHHHHH
Confidence 6778888777666544443
No 90
>PF13980 UPF0370: Uncharacterised protein family (UPF0370)
Probab=47.91 E-value=27 Score=21.96 Aligned_cols=15 Identities=7% Similarity=0.406 Sum_probs=9.8
Q ss_pred HHHHHhHHHHHHHHH
Q 027720 187 MWFQNMKIKLIVLGI 201 (219)
Q Consensus 187 ~~~~~~k~~iii~~v 201 (219)
.|...|++++++.++
T Consensus 2 ~WladYWWiiLl~lv 16 (63)
T PF13980_consen 2 HWLADYWWIILLILV 16 (63)
T ss_pred cHHHHHHHHHHHHHH
Confidence 477888877555444
No 91
>PF15339 Afaf: Acrosome formation-associated factor
Probab=47.89 E-value=29 Score=26.89 Aligned_cols=24 Identities=25% Similarity=0.663 Sum_probs=14.7
Q ss_pred hHHHHHHHH-HHHHHHHHHHHHhcC
Q 027720 192 MKIKLIVLG-IIIALILIIVLSVCG 215 (219)
Q Consensus 192 ~k~~iii~~-vv~~~~~~i~~~~c~ 215 (219)
.|+.+++|+ +..+++|++++.+|.
T Consensus 128 ~KlkLmLGIsLmTl~lfv~Ll~~c~ 152 (200)
T PF15339_consen 128 LKLKLMLGISLMTLFLFVILLAFCS 152 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455544 445666778888884
No 92
>KOG4782 consensus Predicted membrane protein [Function unknown]
Probab=46.95 E-value=61 Score=22.44 Aligned_cols=40 Identities=23% Similarity=0.395 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHhHHHHHHH----HHHHHhHHHHHHHHHHHHHH
Q 027720 167 ENLRSQAQDFRQQGTQMRRK----MWFQNMKIKLIVLGIIIALI 206 (219)
Q Consensus 167 ~~L~~~s~~f~~~s~~l~~~----~~~~~~k~~iii~~vv~~~~ 206 (219)
|+|...-+.|.+++.+.++. .+-+|||-.+-.+++..+++
T Consensus 28 EdL~peQ~h~akQaE~an~ekV~~~~aknykN~is~a~i~alVi 71 (108)
T KOG4782|consen 28 EDLPPEQKHFAKQAEKANQEKVKEIFAKNYKNHISFAGIGALVI 71 (108)
T ss_pred hhCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 45555555666666555432 34456665555444444333
No 93
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.89 E-value=45 Score=28.32 Aligned_cols=39 Identities=18% Similarity=0.457 Sum_probs=16.8
Q ss_pred HHHHHHh-HHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHH
Q 027720 173 AQDFRQQ-GTQMRRKMWF-QNMKIKLIVLGIIIALILIIVL 211 (219)
Q Consensus 173 s~~f~~~-s~~l~~~~~~-~~~k~~iii~~vv~~~~~~i~~ 211 (219)
|..|-.+ +..+++.... ++-+-|-++++++++++++|++
T Consensus 246 A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~~v~v 286 (297)
T KOG0810|consen 246 AVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIIIVVLV 286 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHHHHHh
Confidence 4444443 3344433322 2334444455554444444443
No 94
>PTZ00370 STEVOR; Provisional
Probab=46.82 E-value=21 Score=30.09 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027720 195 KLIVLGIIIALILIIVL 211 (219)
Q Consensus 195 ~iii~~vv~~~~~~i~~ 211 (219)
+++++++|++++++||+
T Consensus 262 lvllil~vvliilYiwl 278 (296)
T PTZ00370 262 LVLLILAVVLIILYIWL 278 (296)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33445566666777775
No 95
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=46.73 E-value=66 Score=19.61 Aligned_cols=44 Identities=16% Similarity=0.415 Sum_probs=33.1
Q ss_pred hHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHH
Q 027720 129 SKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQ 172 (219)
Q Consensus 129 dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~ 172 (219)
+.+..+...+.+++++..+=-..+-+-++.|+.+.+..++....
T Consensus 12 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~ 55 (66)
T smart00397 12 EELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVN 55 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 67888888888888887655556666788888888776666554
No 96
>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport. Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.
Probab=46.46 E-value=1.1e+02 Score=22.26 Aligned_cols=83 Identities=13% Similarity=0.208 Sum_probs=45.5
Q ss_pred EEeCCeeEEee--cCCCCC--------HHHH---HHHHHhcCC-C-C-C--CeeEEEECCe-EEEEEEeCCEEEEEEec-
Q 027720 11 VARGTVILAEY--TEFTGN--------FTGI---AAQCLQKLP-S-S-N--NKFTYNCDGH-TFNYLVDDGFTYCVVAV- 70 (219)
Q Consensus 11 Iar~~~iLae~--~~~~~~--------~~~~---a~~il~~i~-~-~-~--~k~~~~~~~~-~~~~l~~~~~~~~~v~d- 70 (219)
|++++.+|-++ +..+.. +.-+ +..+++..- . . + =+.....+++ .|.|+...++=|+.+++
T Consensus 2 Ig~~n~PLy~~~~~~~~~~~~~~~~~l~~~~~h~sLD~iee~~~~~~~~~yLg~l~~~~~~~vygyvT~t~~Kfvl~~~~ 81 (132)
T PF04628_consen 2 IGPNNNPLYIRSFPSEKESSSSDARHLYQFIAHSSLDVIEEKLWKSSSDMYLGLLDPFEDYKVYGYVTNTGIKFVLVHDM 81 (132)
T ss_dssp E-TTS-EEEEEEE--ST-CGHHHHHHHHHHHHHHHHHHHHHCCHCSSSCSEEEEEEEETTEEEEEEETTT--EEEEEECG
T ss_pred CCCCCcceEEEecCCCcccccchHHHHHHHHHHHHHHHHHHHHhhcccccccCceehhhhHHHHhhhccCceeEEEEEec
Confidence 67788887665 333322 2222 334444322 2 1 1 1234455666 57777777888888887
Q ss_pred --CCcChhhHHHHHHHHHHHHHhhh
Q 027720 71 --ESVGRQVPIAFLERVKEDFIKRY 93 (219)
Q Consensus 71 --~~~~~~~af~fL~~i~~~f~~~~ 93 (219)
........-.|.++++..|....
T Consensus 82 ~~~~~~d~~ik~fF~~vh~~Y~~~~ 106 (132)
T PF04628_consen 82 SDNSIRDEDIKQFFKEVHELYVKAL 106 (132)
T ss_dssp GG-S--HHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHc
Confidence 45556678899999999988765
No 97
>PRK11546 zraP zinc resistance protein; Provisional
Probab=45.75 E-value=66 Score=24.24 Aligned_cols=17 Identities=18% Similarity=0.389 Sum_probs=11.3
Q ss_pred hHHHHHHHHhhhhhhhc
Q 027720 129 SKLAKVKAQVSEVKGVM 145 (219)
Q Consensus 129 dkl~~i~~~v~~vk~im 145 (219)
.++.++.+|+.+++.-|
T Consensus 89 ~kI~aL~kEI~~Lr~kL 105 (143)
T PRK11546 89 SKINAVAKEMENLRQSL 105 (143)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56777777777766543
No 98
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=45.41 E-value=26 Score=23.64 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 027720 194 IKLIVLGIIIALILIIVLSV 213 (219)
Q Consensus 194 ~~iii~~vv~~~~~~i~~~~ 213 (219)
+..+++++|++++.++++.+
T Consensus 6 i~~iialiv~~iiaIvvW~i 25 (81)
T PF00558_consen 6 ILAIIALIVALIIAIVVWTI 25 (81)
T ss_dssp --HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555544444443
No 99
>PHA03054 IMV membrane protein; Provisional
Probab=44.82 E-value=12 Score=24.46 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=7.7
Q ss_pred HHHHHhHHHHHHHHHHHHH
Q 027720 187 MWFQNMKIKLIVLGIIIAL 205 (219)
Q Consensus 187 ~~~~~~k~~iii~~vv~~~ 205 (219)
.||..+.+++++..+++++
T Consensus 44 ~~~~~~~~ii~l~~v~~~~ 62 (72)
T PHA03054 44 GCWGWYWLIIIFFIVLILL 62 (72)
T ss_pred CCchHHHHHHHHHHHHHHH
Confidence 3444344444444343333
No 100
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=44.40 E-value=69 Score=19.15 Aligned_cols=44 Identities=23% Similarity=0.427 Sum_probs=30.6
Q ss_pred hHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHH
Q 027720 129 SKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQ 172 (219)
Q Consensus 129 dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~ 172 (219)
+.+..+...+.+++++..+==..+-+-|+.|+.+.+..+.....
T Consensus 6 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~ 49 (60)
T cd00193 6 EELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVN 49 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888886644444555667888888666665544
No 101
>PF05527 DUF758: Domain of unknown function (DUF758) ; InterPro: IPR008477 This is a family of eukaryotic proteins with unknown function, which are induced by tumour necrosis factor.; PDB: 3F4M_A.
Probab=42.96 E-value=45 Score=26.26 Aligned_cols=78 Identities=14% Similarity=0.241 Sum_probs=37.9
Q ss_pred cCCcChhhHHHHHHHHHHHHHhhhCCCCCcccccccchhhhhHHHHHhhhhhcCCchhhhHHHHHHHHhhhhhhhchhcH
Q 027720 70 VESVGRQVPIAFLERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNI 149 (219)
Q Consensus 70 d~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~dkl~~i~~~v~~vk~im~~ni 149 (219)
+-+|.+..--..|.|.++...+... +..++.| ...++.....| .+|+=.+.+-.-+.+..+.-.-+.+.+
T Consensus 108 ~fTfD~~~L~~~L~ec~~~L~~lv~----~HLT~KS-----~~Ri~~vF~~f-~~~efL~~lf~~~~~~~~~L~~i~~~L 177 (186)
T PF05527_consen 108 DFTFDRNYLSKLLKECRDLLHQLVE----PHLTPKS-----HGRIDHVFNFF-SDPEFLDALFSPDEEYRDHLGKICDGL 177 (186)
T ss_dssp TS---HHHHHHHHHHHHHHHHHHHT----TTS-HHH-----HHHHHHHHHHH-T-HHHHHHHTSG--GGHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHH----HhCChhh-----HHHHHHHHHhh-CChHHHHHHhCcccchHHHHHHHHHHH
Confidence 4445555556666666666655442 1112212 13444555555 445433444333445555555677788
Q ss_pred HHHHhhhh
Q 027720 150 EKVLDRGE 157 (219)
Q Consensus 150 ~~~l~Rge 157 (219)
+++|++|.
T Consensus 178 nklld~g~ 185 (186)
T PF05527_consen 178 NKLLDEGS 185 (186)
T ss_dssp HHHHHTT-
T ss_pred HHHHhCCC
Confidence 88998884
No 102
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=42.62 E-value=1.5e+02 Score=22.71 Aligned_cols=13 Identities=15% Similarity=0.434 Sum_probs=7.0
Q ss_pred HhHHHHHHHHHHH
Q 027720 178 QQGTQMRRKMWFQ 190 (219)
Q Consensus 178 ~~s~~l~~~~~~~ 190 (219)
....+++.-.-|+
T Consensus 80 t~gERl~allsWr 92 (156)
T PF08372_consen 80 TQGERLQALLSWR 92 (156)
T ss_pred HHHHHHHHhhccC
Confidence 3345555556664
No 103
>PHA03011 hypothetical protein; Provisional
Probab=42.40 E-value=1e+02 Score=21.67 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=38.6
Q ss_pred hHHHHHhhhhhcCCchhhhHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhH
Q 027720 111 GPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENL 169 (219)
Q Consensus 111 ~~~l~~~~~~~~~~~~~~dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L 169 (219)
...+.++.-+|| .-.|...-+..+..+...+..+|.|.+.--...+|.|.+.-.++
T Consensus 63 ~e~ldeL~~qYN---~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN~ 118 (120)
T PHA03011 63 IEILDELIAQYN---ELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIANL 118 (120)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhcc
Confidence 345556665563 23367777888888888888888888887777777776654443
No 104
>COG4327 Predicted membrane protein [Function unknown]
Probab=42.27 E-value=50 Score=22.90 Aligned_cols=32 Identities=16% Similarity=0.430 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 027720 179 QGTQMRRKMWFQNMKIKLIVLGIIIALILIIV 210 (219)
Q Consensus 179 ~s~~l~~~~~~~~~k~~iii~~vv~~~~~~i~ 210 (219)
.++.-++..|..|..++.++.+|-.++.|+.+
T Consensus 5 ~~~~~a~aywranttli~~lL~vwflVSfvvi 36 (101)
T COG4327 5 DAEHPARAYWRANTTLIAALLGVWFLVSFVVI 36 (101)
T ss_pred ccccHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 34555677888888877776655444444443
No 105
>PHA02975 hypothetical protein; Provisional
Probab=41.46 E-value=39 Score=21.93 Aligned_cols=13 Identities=8% Similarity=0.222 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 027720 194 IKLIVLGIIIALI 206 (219)
Q Consensus 194 ~~iii~~vv~~~~ 206 (219)
++++++.++++++
T Consensus 47 ~ii~i~~v~~~~~ 59 (69)
T PHA02975 47 LIIFIIFITCIAV 59 (69)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333444333
No 106
>PF12420 DUF3671: Protein of unknown function ; InterPro: IPR022139 This domain family is found in eukaryotes, and is typically between 96 and 116 amino acids in length.
Probab=41.38 E-value=1.2e+02 Score=21.37 Aligned_cols=18 Identities=17% Similarity=0.301 Sum_probs=10.5
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 027720 186 KMWFQNMKIKLIVLGIII 203 (219)
Q Consensus 186 ~~~~~~~k~~iii~~vv~ 203 (219)
+.-|++|...+++.+++.
T Consensus 39 ki~~KKyg~~~il~~l~~ 56 (104)
T PF12420_consen 39 KIIFKKYGLIFILPFLVP 56 (104)
T ss_pred HHHHHHhhHHHHHHHHHH
Confidence 345667776666555444
No 107
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=40.38 E-value=99 Score=25.48 Aligned_cols=50 Identities=14% Similarity=0.197 Sum_probs=20.9
Q ss_pred HHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHHhH
Q 027720 131 LAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQG 180 (219)
Q Consensus 131 l~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~~s 180 (219)
+..+..+++..+.-...+..+.-......+.+..++.+|...........
T Consensus 54 l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i 103 (264)
T PF06008_consen 54 LESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNI 103 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433333333333334444444444444444443333
No 108
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=40.27 E-value=1e+02 Score=20.07 Aligned_cols=28 Identities=11% Similarity=0.433 Sum_probs=16.1
Q ss_pred hhHHhhHHhhhhHHHHHHHHHHhHHHHHHH
Q 027720 157 EKIELLVDRTENLRSQAQDFRQQGTQMRRK 186 (219)
Q Consensus 157 e~le~L~~ks~~L~~~s~~f~~~s~~l~~~ 186 (219)
++||.+++|-|.- ++.-|++-.+++-|-
T Consensus 22 kRLdeieekvef~--~~Ev~Qr~GkkiGRD 49 (75)
T COG4064 22 KRLDEIEEKVEFV--NGEVYQRIGKKIGRD 49 (75)
T ss_pred HHHHHHHHHHHhh--HHHHHHHHHHHhcch
Confidence 4556666555543 345566666676665
No 109
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=40.18 E-value=40 Score=22.18 Aligned_cols=7 Identities=43% Similarity=0.581 Sum_probs=2.7
Q ss_pred hhhhhhc
Q 027720 139 SEVKGVM 145 (219)
Q Consensus 139 ~~vk~im 145 (219)
+.|+.+|
T Consensus 25 ~vVksVl 31 (72)
T PF12575_consen 25 NVVKSVL 31 (72)
T ss_pred HHHHHHH
Confidence 3344333
No 110
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.11 E-value=92 Score=24.85 Aligned_cols=21 Identities=24% Similarity=0.608 Sum_probs=13.0
Q ss_pred HHHHHHhHHHHH-HHHHHHHhH
Q 027720 173 AQDFRQQGTQMR-RKMWFQNMK 193 (219)
Q Consensus 173 s~~f~~~s~~l~-~~~~~~~~k 193 (219)
=..|+..|...+ |-|||.-.-
T Consensus 169 E~~FR~tSES~NsRvm~Wsv~Q 190 (215)
T KOG1690|consen 169 EETFRDTSESANSRVMWWSVAQ 190 (215)
T ss_pred HHHHHhhhhhhcceeeehhHHH
Confidence 345777776666 667775433
No 111
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=40.07 E-value=28 Score=26.30 Aligned_cols=10 Identities=20% Similarity=0.069 Sum_probs=4.4
Q ss_pred hHHHHHHHHH
Q 027720 192 MKIKLIVLGI 201 (219)
Q Consensus 192 ~k~~iii~~v 201 (219)
.|+++.+.+.
T Consensus 119 nklilaisvt 128 (154)
T PF14914_consen 119 NKLILAISVT 128 (154)
T ss_pred chhHHHHHHH
Confidence 3444444433
No 112
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=40.05 E-value=67 Score=21.78 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=22.7
Q ss_pred hhHHhhHHhhhhHHHHHHHHHHhHHHHHHHH
Q 027720 157 EKIELLVDRTENLRSQAQDFRQQGTQMRRKM 187 (219)
Q Consensus 157 e~le~L~~ks~~L~~~s~~f~~~s~~l~~~~ 187 (219)
.-||.|++|.++|...-..+-...++.|+.+
T Consensus 40 s~LD~LE~rnD~l~~~L~~LLesnrq~R~e~ 70 (83)
T PF03670_consen 40 SCLDHLEQRNDHLHAQLQELLESNRQIRLEF 70 (83)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888888888887777777766554
No 113
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=40.01 E-value=31 Score=30.32 Aligned_cols=23 Identities=17% Similarity=0.524 Sum_probs=15.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Q 027720 184 RRKMWFQNMKIKLIVLGIIIALI 206 (219)
Q Consensus 184 ~~~~~~~~~k~~iii~~vv~~~~ 206 (219)
+++-||.++...+++.+++++++
T Consensus 294 r~r~~~~r~~~c~~~~i~~lL~i 316 (387)
T PF12751_consen 294 RQRSWFSRFASCIYLSILLLLVI 316 (387)
T ss_pred ccccHHhhhhHHHHHHHHHHHHH
Confidence 45679999988777665544333
No 114
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=39.71 E-value=39 Score=20.59 Aligned_cols=13 Identities=23% Similarity=0.250 Sum_probs=8.3
Q ss_pred HHHHHhHHHHHHH
Q 027720 187 MWFQNMKIKLIVL 199 (219)
Q Consensus 187 ~~~~~~k~~iii~ 199 (219)
.||+++|..++-+
T Consensus 2 e~~~~~~~~iiG~ 14 (51)
T PF10031_consen 2 EFWKNHRGKIIGG 14 (51)
T ss_pred hHHHHCcchHHHH
Confidence 4788887555543
No 115
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=39.17 E-value=1.8e+02 Score=23.43 Aligned_cols=22 Identities=9% Similarity=0.055 Sum_probs=12.5
Q ss_pred hhhhHHhhHHhhhhHHHHHHHH
Q 027720 155 RGEKIELLVDRTENLRSQAQDF 176 (219)
Q Consensus 155 Rge~le~L~~ks~~L~~~s~~f 176 (219)
=++.|+.|+.+-+++.-..+..
T Consensus 13 ~~~~L~rle~qi~q~~~~~~~~ 34 (251)
T COG5415 13 YTADLSRLESQIHQLDVALKKS 34 (251)
T ss_pred chhhHHHHHHHHHHHHHHHHHH
Confidence 3555666666666665555443
No 116
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=39.14 E-value=2.5e+02 Score=28.85 Aligned_cols=53 Identities=17% Similarity=0.156 Sum_probs=29.3
Q ss_pred HHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHHhHHHHH
Q 027720 132 AKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMR 184 (219)
Q Consensus 132 ~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~~s~~l~ 184 (219)
..+++..+.+++.+.+-.+....-.++.+.|.+.++.|-.+|..-.+.-+.|.
T Consensus 1664 ~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe 1716 (1758)
T KOG0994|consen 1664 EILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLE 1716 (1758)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555556666666666666666554444444444
No 117
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=38.67 E-value=2e+02 Score=26.24 Aligned_cols=18 Identities=11% Similarity=0.257 Sum_probs=8.7
Q ss_pred HHHhHHHHHHHHHHHHHH
Q 027720 189 FQNMKIKLIVLGIIIALI 206 (219)
Q Consensus 189 ~~~~k~~iii~~vv~~~~ 206 (219)
|--+-+.+++.++||+++
T Consensus 210 W~~~v~lL~l~LvvC~v~ 227 (526)
T KOG4433|consen 210 WLAYVLLLTLLLVVCLVL 227 (526)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444455555555543
No 118
>PRK13664 hypothetical protein; Provisional
Probab=38.40 E-value=65 Score=20.18 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=8.7
Q ss_pred HHHHHhHHHHHHHH
Q 027720 187 MWFQNMKIKLIVLG 200 (219)
Q Consensus 187 ~~~~~~k~~iii~~ 200 (219)
.|...|++++++.+
T Consensus 2 ~WLadyWWilill~ 15 (62)
T PRK13664 2 DWLAKYWWILVLVF 15 (62)
T ss_pred chHHHHHHHHHHHH
Confidence 36777877755443
No 119
>PF14992 TMCO5: TMCO5 family
Probab=38.29 E-value=2.4e+02 Score=23.74 Aligned_cols=18 Identities=6% Similarity=0.425 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 027720 181 TQMRRKMWFQNMKIKLIV 198 (219)
Q Consensus 181 ~~l~~~~~~~~~k~~iii 198 (219)
++-++..|.|.+++++..
T Consensus 207 ~~~~~~~wkr~lr~l~f~ 224 (280)
T PF14992_consen 207 KKNSPTFWKRALRLLFFM 224 (280)
T ss_pred HhhhhHHHHHHHHHHHHH
Confidence 344468888888885433
No 120
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.00 E-value=1.1e+02 Score=25.62 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=7.7
Q ss_pred HHHHhHHHHHHHHHHH
Q 027720 175 DFRQQGTQMRRKMWFQ 190 (219)
Q Consensus 175 ~f~~~s~~l~~~~~~~ 190 (219)
.-...+..|++.+..+
T Consensus 223 nveqg~~~L~kA~~yq 238 (269)
T KOG0811|consen 223 NVEQGTENLRKAAKYQ 238 (269)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334455666554443
No 121
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.95 E-value=1.2e+02 Score=19.90 Aligned_cols=51 Identities=16% Similarity=0.270 Sum_probs=27.9
Q ss_pred hhHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHH
Q 027720 128 ISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQ 178 (219)
Q Consensus 128 ~dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~ 178 (219)
.|.+.-++-++++.|+--..=-+.+-+-.+..|.|+...++|+..-...+.
T Consensus 17 vdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQe 67 (79)
T COG3074 17 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQE 67 (79)
T ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888888877653211222333344455566666666555444433
No 122
>PHA02819 hypothetical protein; Provisional
Probab=37.34 E-value=53 Score=21.45 Aligned_cols=11 Identities=9% Similarity=0.229 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 027720 193 KIKLIVLGIII 203 (219)
Q Consensus 193 k~~iii~~vv~ 203 (219)
.+++++..+++
T Consensus 48 ~~ii~l~~~~~ 58 (71)
T PHA02819 48 YLIIGLVTIVF 58 (71)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 123
>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.07 E-value=1.3e+02 Score=26.31 Aligned_cols=44 Identities=23% Similarity=0.389 Sum_probs=34.9
Q ss_pred CCeEEEEEEeCCEEEEEEecCCcChhhHHHHHHHHHHHHHhhhC
Q 027720 51 DGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFIKRYG 94 (219)
Q Consensus 51 ~~~~~~~l~~~~~~~~~v~d~~~~~~~af~fL~~i~~~f~~~~~ 94 (219)
..|.++-...+++.+++++..+.|.-.++.||.+|.+-|.+-++
T Consensus 53 p~hylfsv~~~~i~~~~~st~e~pPL~~iefL~rv~dv~~eyFg 96 (418)
T KOG2740|consen 53 PHHYLFSVYRDLIFFCAVSTVETPPLMVIEFLHRVVDVLLEYFG 96 (418)
T ss_pred CceeeeeeeccCcEEEEEEeccCCChhHHHHHHHHHHHHHHHhc
Confidence 44444445577888888888899988999999999999987764
No 124
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=35.98 E-value=21 Score=24.87 Aligned_cols=13 Identities=23% Similarity=0.365 Sum_probs=8.2
Q ss_pred HHHHHHHHHhcCC
Q 027720 204 ALILIIVLSVCGG 216 (219)
Q Consensus 204 ~~~~~i~~~~c~g 216 (219)
++.++.|+++|++
T Consensus 82 lv~~l~w~f~~r~ 94 (96)
T PTZ00382 82 LVGFLCWWFVCRG 94 (96)
T ss_pred HHHHHhheeEEee
Confidence 3446677777764
No 125
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=35.91 E-value=1.6e+02 Score=21.27 Aligned_cols=21 Identities=0% Similarity=0.056 Sum_probs=11.9
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHH
Q 027720 176 FRQQGTQMRRKMWFQNMKIKLIV 198 (219)
Q Consensus 176 f~~~s~~l~~~~~~~~~k~~iii 198 (219)
..+++++ ++.++++|.++.+.
T Consensus 58 ~~~k~~~--~~~~i~kyg~~GL~ 78 (121)
T PF06695_consen 58 LEKKAEK--KSKKIEKYGFWGLA 78 (121)
T ss_pred HHHHHHH--HHHHHHHHhHHHHH
Confidence 3344444 66777888755443
No 126
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=35.88 E-value=30 Score=27.76 Aligned_cols=17 Identities=29% Similarity=0.583 Sum_probs=8.3
Q ss_pred hHHHHHHHHHHHHHHHH
Q 027720 192 MKIKLIVLGIIIALILI 208 (219)
Q Consensus 192 ~k~~iii~~vv~~~~~~ 208 (219)
.|+-++|.+||+.++|+
T Consensus 126 ~K~amLIClIIIAVLfL 142 (227)
T PF05399_consen 126 NKMAMLICLIIIAVLFL 142 (227)
T ss_pred cchhHHHHHHHHHHHHH
Confidence 45555555544444443
No 127
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=35.88 E-value=1.4e+02 Score=26.06 Aligned_cols=17 Identities=6% Similarity=0.122 Sum_probs=10.1
Q ss_pred CCCcc-eEEEEEEeCCee
Q 027720 1 MGQQS-LIYSFVARGTVI 17 (219)
Q Consensus 1 ~~~~~-i~Ya~Iar~~~i 17 (219)
|+++. +.|.++.+++.+
T Consensus 1 ~~~~~~~~y~a~~~~G~~ 18 (399)
T PRK10573 1 MASKQLWRWQAINGKGEL 18 (399)
T ss_pred CCCCCeEEEEEECCCCCE
Confidence 45554 667777666543
No 128
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=35.84 E-value=2.5e+02 Score=26.21 Aligned_cols=51 Identities=12% Similarity=0.142 Sum_probs=39.3
Q ss_pred hhHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHH
Q 027720 128 ISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQ 178 (219)
Q Consensus 128 ~dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~ 178 (219)
.+++...++.+++++.-=.+|...+.++-+.++.|...........+.|++
T Consensus 190 ~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~ 240 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKN 240 (555)
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999865677778889999999887777766555554444
No 129
>PRK09697 protein secretion protein GspB; Provisional
Probab=35.51 E-value=32 Score=24.67 Aligned_cols=28 Identities=7% Similarity=0.184 Sum_probs=17.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Q 027720 185 RKMWFQNMKIKLIVLGIIIALILIIVLSVC 214 (219)
Q Consensus 185 ~~~~~~~~k~~iii~~vv~~~~~~i~~~~c 214 (219)
..||-++.--. |+.|+++.++.+|...|
T Consensus 17 ~~~~~~~~~~T--I~~Vi~L~~~~L~~AG~ 44 (139)
T PRK09697 17 PGIFSRQKHST--IIYVICLLLICLWFAGM 44 (139)
T ss_pred cchhhhhhccc--hHHHHHHHHHHHHHhcc
Confidence 45665555433 44466777777777666
No 130
>KOG3323 consensus D-Tyr-tRNA (Tyr) deacylase [Translation, ribosomal structure and biogenesis]
Probab=35.49 E-value=1.7e+02 Score=21.94 Aligned_cols=87 Identities=16% Similarity=0.183 Sum_probs=41.7
Q ss_pred EEEEeCCeeEEeecC--CCCCHHHHHHHHHh-cCCCCC-Ce-eEEEECCeEEEEEEeCCEEEEEEe---cC----CcChh
Q 027720 9 SFVARGTVILAEYTE--FTGNFTGIAAQCLQ-KLPSSN-NK-FTYNCDGHTFNYLVDDGFTYCVVA---VE----SVGRQ 76 (219)
Q Consensus 9 a~Iar~~~iLae~~~--~~~~~~~~a~~il~-~i~~~~-~k-~~~~~~~~~~~~l~~~~~~~~~v~---d~----~~~~~ 76 (219)
+.|.||=.||.-... ...+.+.+.+++|. ++-..+ .+ .....-+..+.++.-..++..+-. .+ ..+..
T Consensus 21 s~I~~Gl~vlvgi~~~dt~ed~~kmvrkiLnlrlfe~es~k~w~ksv~dl~~eiL~VsQfTL~~rlKG~kpdfH~am~~~ 100 (149)
T KOG3323|consen 21 SEIGRGLCVLVGISKDDTEEDLEKMVRKILNLRLFEDESGKGWKKSVMDLNGEILCVSQFTLYGRLKGNKPDFHLAMKGE 100 (149)
T ss_pred eeecCceEEEEEEccCCCHHHHHHHHHHHhheeeccccccCcccchhhhCCCCEEEEEeeeeeeeecCCCcchhhhcCch
Confidence 345555555543322 23467778888886 444432 11 111111111222333334444433 22 33556
Q ss_pred hHHHHHHHHHHHHHhhhCC
Q 027720 77 VPIAFLERVKEDFIKRYGG 95 (219)
Q Consensus 77 ~af~fL~~i~~~f~~~~~~ 95 (219)
.|+.|-++.-..+.+.|.+
T Consensus 101 ea~elY~qfl~~l~k~~~~ 119 (149)
T KOG3323|consen 101 EAKELYNQFLELLRKAYGA 119 (149)
T ss_pred hhHHHHHHHHHHHHHHhCc
Confidence 7777777777777776643
No 131
>KOG3369 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.30 E-value=2.2e+02 Score=22.31 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=39.3
Q ss_pred HHHhcCCCCC---CeeEEEECCeEEEEEE-eCCEEEEEEecCCcChhhHHHHHHHHHHHHHh
Q 027720 34 QCLQKLPSSN---NKFTYNCDGHTFNYLV-DDGFTYCVVAVESVGRQVPIAFLERVKEDFIK 91 (219)
Q Consensus 34 ~il~~i~~~~---~k~~~~~~~~~~~~l~-~~~~~~~~v~d~~~~~~~af~fL~~i~~~f~~ 91 (219)
.+..++.|.+ +......+.+..|+.. -.|+-|++++++.. ..|=.+|+.+...|..
T Consensus 109 aI~~qlsp~~ksSGie~LetdtF~l~~~QTlTG~KFVvis~~~~--~~aD~lLrKiYelYsD 168 (199)
T KOG3369|consen 109 AISTQLSPEPKSSGIEVLETDTFTLHIFQTLTGTKFVVIAEPGT--QGADSLLRKIYELYSD 168 (199)
T ss_pred heeeccCCCCCCCceEEEEeccEEEEEEEccCCcEEEEEecCCc--hhHHHHHHHHHHHHHH
Confidence 3445555542 3456667888877765 58999999999877 4667788888776643
No 132
>COG4499 Predicted membrane protein [Function unknown]
Probab=34.71 E-value=63 Score=28.50 Aligned_cols=30 Identities=23% Similarity=0.342 Sum_probs=16.9
Q ss_pred HHHHHHHhcCCCCC-CeeEEEECCeEEEEEE
Q 027720 30 GIAAQCLQKLPSSN-NKFTYNCDGHTFNYLV 59 (219)
Q Consensus 30 ~~a~~il~~i~~~~-~k~~~~~~~~~~~~l~ 59 (219)
.+-..+|++.||.- ...+...|.+.+||-+
T Consensus 39 ~~~~~lld~~~~f~~~eit~~~Ds~vIsy~i 69 (434)
T COG4499 39 ALLAELLDKSPPFIVAEITEDNDSFVISYPI 69 (434)
T ss_pred HHHHHHhccCCCccceeecccCceeEEEecC
Confidence 34567788866662 2233444666666643
No 133
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=34.52 E-value=58 Score=27.83 Aligned_cols=19 Identities=37% Similarity=0.473 Sum_probs=16.2
Q ss_pred hHHHHHHHHhhhhhhhchh
Q 027720 129 SKLAKVKAQVSEVKGVMMD 147 (219)
Q Consensus 129 dkl~~i~~~v~~vk~im~~ 147 (219)
+.+..++.+++.+|.+|.+
T Consensus 230 ~eL~~iqaqL~tvks~m~~ 248 (372)
T COG3524 230 DELIVIQAQLDTVKSVMNP 248 (372)
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 6788899999999999933
No 134
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=34.37 E-value=52 Score=24.07 Aligned_cols=13 Identities=23% Similarity=0.409 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 027720 195 KLIVLGIIIALIL 207 (219)
Q Consensus 195 ~iii~~vv~~~~~ 207 (219)
..|+++|++.++.
T Consensus 67 ~~Ii~gv~aGvIg 79 (122)
T PF01102_consen 67 IGIIFGVMAGVIG 79 (122)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHH
Confidence 3444444443333
No 135
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=34.27 E-value=61 Score=28.50 Aligned_cols=18 Identities=6% Similarity=0.056 Sum_probs=10.8
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 027720 186 KMWFQNMKIKLIVLGIII 203 (219)
Q Consensus 186 ~~~~~~~k~~iii~~vv~ 203 (219)
+.+|++.|++++++++++
T Consensus 34 ~~L~r~k~~Il~~~~~~~ 51 (377)
T PRK10381 34 SVLWKAKKTIIAITFAFA 51 (377)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466777776665554443
No 136
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=34.18 E-value=59 Score=21.89 Aligned_cols=20 Identities=30% Similarity=0.670 Sum_probs=10.3
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q 027720 191 NMKIKLIVLGIIIALILIIV 210 (219)
Q Consensus 191 ~~k~~iii~~vv~~~~~~i~ 210 (219)
+.|-.+|+.++|++++.+|.
T Consensus 32 ~lKrlliivvVvVlvVvviv 51 (93)
T PF08999_consen 32 NLKRLLIIVVVVVLVVVVIV 51 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEEeeehhHHHHH
Confidence 55555555555554444444
No 137
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=33.91 E-value=1.2e+02 Score=20.50 Aligned_cols=25 Identities=24% Similarity=0.479 Sum_probs=14.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Q 027720 184 RRKMWFQNMKIKLIVLGIIIALILI 208 (219)
Q Consensus 184 ~~~~~~~~~k~~iii~~vv~~~~~~ 208 (219)
++..|.+|.+++.++.++=.++.++
T Consensus 3 ~~~yWr~n~rl~~~lL~iW~vvsfg 27 (81)
T PF13937_consen 3 ARAYWRKNLRLIAILLAIWFVVSFG 27 (81)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888776665543333333
No 138
>PF11675 DUF3271: Protein of unknown function (DUF3271); InterPro: IPR021689 This family of proteins with unknown function appears to be restricted to Plasmodium.
Probab=33.77 E-value=1.3e+02 Score=24.66 Aligned_cols=55 Identities=15% Similarity=0.312 Sum_probs=36.6
Q ss_pred CcceEEEEEEeCCeeEEeecCCCCCHHHHHHHHHhcCCCCCCeeEEEECCeEEEEEEe
Q 027720 3 QQSLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSNNKFTYNCDGHTFNYLVD 60 (219)
Q Consensus 3 ~~~i~Ya~Iar~~~iLae~~~~~~~~~~~a~~il~~i~~~~~k~~~~~~~~~~~~l~~ 60 (219)
|++|-|..|+.-+..+.........+=.++..++..-+.+ .+..++.++ ||.++.
T Consensus 28 pk~i~y~sv~qpt~~f~~~~k~h~~YLdiIN~il~~eSeN-~Kyayeg~n--YHwvIT 82 (249)
T PF11675_consen 28 PKPIAYISVAQPTATFEHDEKKHTKYLDIINDILRDESEN-IKYAYEGGN--YHWVIT 82 (249)
T ss_pred CCceeEEeccCceEEEeecCccchhHHHHHHHHHhccccc-cceeeeCCc--eEEEEE
Confidence 6789999998877666655444555667778888776655 355555555 555543
No 139
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=33.73 E-value=60 Score=19.38 Aligned_cols=25 Identities=16% Similarity=0.399 Sum_probs=12.8
Q ss_pred HHhHHHHHH-HHHHHHHHHHHHH-Hhc
Q 027720 190 QNMKIKLIV-LGIIIALILIIVL-SVC 214 (219)
Q Consensus 190 ~~~k~~iii-~~vv~~~~~~i~~-~~c 214 (219)
++++|++++ .+++|++++...+ +.|
T Consensus 2 kk~rwiili~iv~~Cl~lyl~ald~~C 28 (47)
T PRK10299 2 KKFRWVVLVVVVLACLLLWAQVFNMMC 28 (47)
T ss_pred ceeeehHHHHHHHHHHHHHHHHHHHHh
Confidence 345555444 4455666655544 345
No 140
>cd01617 DCX Ubiquitin-like domain of DCX. DCX The ubiquitin-like DCX domain is present in tandem within the N-terminal half of the doublecortin protein. Doublecortin is expressed in migrating neurons. Mutations in the gene encoding doublecortin cause lissencephaly in males and 'double-cortex syndrome' in females.
Probab=33.65 E-value=76 Score=21.03 Aligned_cols=49 Identities=22% Similarity=0.336 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHhcCCC--CCCeeEEEECC-eEEEEEE--eCCEEEEEEecCCc
Q 027720 25 TGNFTGIAAQCLQKLPS--SNNKFTYNCDG-HTFNYLV--DDGFTYCVVAVESV 73 (219)
Q Consensus 25 ~~~~~~~a~~il~~i~~--~~~k~~~~~~~-~~~~~l~--~~~~~~~~v~d~~~ 73 (219)
-.+|+.+...+-+++.+ ..-+..++.+| ....-+. ++|-.|+|...+.+
T Consensus 25 ~~sfd~lL~~lt~~l~l~~~~Vr~lyt~~g~~~v~~~~~l~~g~~yVa~g~e~f 78 (80)
T cd01617 25 FKSFDALLDDLTEKVQLDPGAVRKLYTLDGGHRVSLLDELEDGGVYVASGREPF 78 (80)
T ss_pred hCCHHHHHHHHHHHhCCCCCcEEEEEcCCCCeEeccHHHhcCCCEEEEECCCCC
Confidence 46899999999998874 55566778877 5544432 58899999876654
No 141
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=33.30 E-value=15 Score=25.26 Aligned_cols=26 Identities=4% Similarity=-0.056 Sum_probs=18.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHh
Q 027720 188 WFQNMKIKLIVLGIIIALILIIVLSV 213 (219)
Q Consensus 188 ~~~~~k~~iii~~vv~~~~~~i~~~~ 213 (219)
-|.++-..+|+.++.++++++.|.++
T Consensus 33 ~ws~vv~v~i~~lvaVg~~YL~y~~f 58 (91)
T PF01708_consen 33 PWSRVVEVAIFTLVAVGCLYLAYTWF 58 (91)
T ss_pred cceeEeeeeehHHHHHHHHHHHHHHH
Confidence 36677767777777777777777664
No 142
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=33.27 E-value=1.4e+02 Score=22.96 Aligned_cols=10 Identities=30% Similarity=0.318 Sum_probs=4.1
Q ss_pred HHHHHHHHhH
Q 027720 184 RRKMWFQNMK 193 (219)
Q Consensus 184 ~~~~~~~~~k 193 (219)
|+|+..|-++
T Consensus 24 r~k~~~R~i~ 33 (161)
T PHA02673 24 RQKAIRRYIK 33 (161)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 143
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=33.06 E-value=95 Score=20.63 Aligned_cols=39 Identities=15% Similarity=0.318 Sum_probs=23.1
Q ss_pred hHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHH
Q 027720 129 SKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRS 171 (219)
Q Consensus 129 dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~ 171 (219)
+|+..++..+++++..+. + +=+=.+|||.+...-++|..
T Consensus 18 ~KVdaLq~~V~~l~~~~~-~---v~~l~~klDa~~~~l~~l~~ 56 (75)
T PF05531_consen 18 DKVDALQTQVDDLESNLP-D---VTELNKKLDAQSAQLTTLNT 56 (75)
T ss_pred HHHHHHHHHHHHHHhcCC-c---hHHHHHHHHHHHHHHHHHHH
Confidence 788899999888776652 2 22224455555544444443
No 144
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=32.93 E-value=85 Score=25.96 Aligned_cols=27 Identities=11% Similarity=0.130 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 027720 180 GTQMRRKMWFQNMKIKLIVLGIIIALI 206 (219)
Q Consensus 180 s~~l~~~~~~~~~k~~iii~~vv~~~~ 206 (219)
+.+.+--.||+.|.+++++++.+.++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (249)
T PRK15348 209 ANKGKVVKWLMKYPYQLMLSLTGLLLG 235 (249)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555689999998888877654443
No 145
>PRK00807 50S ribosomal protein L24e; Validated
Probab=32.39 E-value=60 Score=19.81 Aligned_cols=22 Identities=14% Similarity=0.283 Sum_probs=17.3
Q ss_pred cCCCCCCeeEEEECCeEEEEEE
Q 027720 38 KLPSSNNKFTYNCDGHTFNYLV 59 (219)
Q Consensus 38 ~i~~~~~k~~~~~~~~~~~~l~ 59 (219)
+|.|++++..+..||..|+|+.
T Consensus 10 ~I~pg~G~~~vr~Dgkv~~Fcs 31 (52)
T PRK00807 10 EIEPGTGKMYVKKDGTILYFCS 31 (52)
T ss_pred eEcCCCCeEEEEeCCcEEEEeC
Confidence 5677777777888998888875
No 146
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=32.36 E-value=2.2e+02 Score=21.46 Aligned_cols=68 Identities=21% Similarity=0.161 Sum_probs=31.2
Q ss_pred cCCcChhhHHHHHHHHHHHHHhhhCCCCCcccccccchhhhhHHHHHhhhhhcCCchhhhHHHHH-HHHhhhhhhhchhc
Q 027720 70 VESVGRQVPIAFLERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKV-KAQVSEVKGVMMDN 148 (219)
Q Consensus 70 d~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~dkl~~i-~~~v~~vk~im~~n 148 (219)
+++.|-=+.....+.+.++..+... .-+ ..|...|.....++.++ ...|-.++ +.-+...++-|.+.
T Consensus 21 ~~DDPILil~TiNe~ll~~~~~aq~---------~~l-~~fk~elE~~~~~w~~d--ak~kAEkiL~aal~~ske~m~~~ 88 (144)
T PF11657_consen 21 SRDDPILILQTINERLLEDSAKAQQ---------EQL-DQFKEELEEIASRWGED--AKEKAEKILNAALAASKEAMNKI 88 (144)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHH---------HHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555655555555555554433221 011 45666676666555322 22333322 33334444444444
Q ss_pred H
Q 027720 149 I 149 (219)
Q Consensus 149 i 149 (219)
+
T Consensus 89 l 89 (144)
T PF11657_consen 89 L 89 (144)
T ss_pred H
Confidence 4
No 147
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=32.33 E-value=1.1e+02 Score=18.62 Aligned_cols=12 Identities=8% Similarity=0.548 Sum_probs=5.3
Q ss_pred HHHhHHHHHHHH
Q 027720 189 FQNMKIKLIVLG 200 (219)
Q Consensus 189 ~~~~k~~iii~~ 200 (219)
|...++--++.+
T Consensus 11 y~tLrigGLi~A 22 (50)
T PF02038_consen 11 YETLRIGGLIFA 22 (50)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHhhccchHHH
Confidence 445554444433
No 148
>PF10039 DUF2275: Predicted integral membrane protein (DUF2275); InterPro: IPR018734 This domain, found in various hypothetical bacterial proteins and in the RNA polymerase sigma factor, has no known function.
Probab=31.97 E-value=68 Score=25.97 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 027720 181 TQMRRKMWFQNMKIKLIVLGIIIAL 205 (219)
Q Consensus 181 ~~l~~~~~~~~~k~~iii~~vv~~~ 205 (219)
++.=.++|.+++|.+.+++++++++
T Consensus 23 ~~~~~~~~~k~~r~~Al~alil~i~ 47 (218)
T PF10039_consen 23 KKGVFRMWRKYKRAIALAALILFIL 47 (218)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433455655556665555544433
No 149
>KOG3658 consensus Tumor necrosis factor-alpha-converting enzyme (TACE/ADAM17) and related metalloproteases [Extracellular structures]
Probab=31.79 E-value=59 Score=30.79 Aligned_cols=29 Identities=14% Similarity=0.583 Sum_probs=22.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 027720 187 MWFQNMKIKLIVLGIIIALILIIVLSVCG 215 (219)
Q Consensus 187 ~~~~~~k~~iii~~vv~~~~~~i~~~~c~ 215 (219)
.|...-||...|+++++|++.++|+.+|.
T Consensus 677 ~w~~~~w~~v~i~gi~~i~~m~~fik~~a 705 (764)
T KOG3658|consen 677 EWIVLNWLAVNIVGIVLIVLMAFFIKICA 705 (764)
T ss_pred HHHHhhhHHhHhHHHHHHHHHHHhhhheE
Confidence 56666677777777888888888888873
No 150
>PHA03164 hypothetical protein; Provisional
Probab=31.73 E-value=70 Score=21.24 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 027720 192 MKIKLIVLGIIIALILIIVL 211 (219)
Q Consensus 192 ~k~~iii~~vv~~~~~~i~~ 211 (219)
+..+++-++++..++++|+.
T Consensus 58 ftFlvLtgLaIamILfiifv 77 (88)
T PHA03164 58 FTFLVLTGLAIAMILFIIFV 77 (88)
T ss_pred eehHHHHHHHHHHHHHHHHH
Confidence 33444445555555555543
No 151
>PHA03386 P10 fibrous body protein; Provisional
Probab=31.38 E-value=1.1e+02 Score=21.23 Aligned_cols=15 Identities=13% Similarity=0.368 Sum_probs=11.0
Q ss_pred hHHHHHHHHhhhhhh
Q 027720 129 SKLAKVKAQVSEVKG 143 (219)
Q Consensus 129 dkl~~i~~~v~~vk~ 143 (219)
+|+..+|.+|++++.
T Consensus 19 ~KVdaLQ~qV~dv~~ 33 (94)
T PHA03386 19 TKVDALQTQLNGLEE 33 (94)
T ss_pred hHHHHHHHHHHHHHh
Confidence 677777777777764
No 152
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=31.20 E-value=99 Score=30.04 Aligned_cols=87 Identities=17% Similarity=0.325 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhhhhhhchhcHHHHHhhhh-hHHhhHHhhhh------------HHHHHHHHHHhHHHHHH----------
Q 027720 129 SKLAKVKAQVSEVKGVMMDNIEKVLDRGE-KIELLVDRTEN------------LRSQAQDFRQQGTQMRR---------- 185 (219)
Q Consensus 129 dkl~~i~~~v~~vk~im~~ni~~~l~Rge-~le~L~~ks~~------------L~~~s~~f~~~s~~l~~---------- 185 (219)
|.+..+...++.+.+|..-|+..+.+||+ .++.|.+|... |...-..|..-|+++..
T Consensus 328 ~qlp~vd~~~~gm~~V~~sei~~~~q~~~s~~n~l~~kvq~q~s~vv~~~~r~l~q~~~~l~~~a~~l~~ql~~~~~s~~ 407 (865)
T KOG4331|consen 328 DQLPNVDAFLSGMPNVVTSEILQSVQRGNSLFNVLPDKVQYQTSGVVDDVMRDLPQIPGDLDGLAEKLPSQLANSVFSGV 407 (865)
T ss_pred hhCCCchHHHhccccchHHHHHHHHHhhhhhhhhhhHHHhhcccccchHHHHHHHhCCchHHHHHhhccHHHHHHHHHHH
Q ss_pred --------------HHHHHHhHHHHHHHH---HHHHHHHHHHHHhcC
Q 027720 186 --------------KMWFQNMKIKLIVLG---IIIALILIIVLSVCG 215 (219)
Q Consensus 186 --------------~~~~~~~k~~iii~~---vv~~~~~~i~~~~c~ 215 (219)
..+.-.|+|+.-+.+ ++.++++.++...||
T Consensus 408 ~~k~~~~s~~~~~~~~ry~~y~wv~~LVicsl~llvll~~~~Gll~G 454 (865)
T KOG4331|consen 408 TLKVEASSLRALQKHLRYPLYRWVVSLVICSLQLLVLLIGLFGLLCG 454 (865)
T ss_pred HHHHHHhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 153
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.11 E-value=2.9e+02 Score=22.37 Aligned_cols=66 Identities=20% Similarity=0.194 Sum_probs=38.6
Q ss_pred HHHHHHHHhhhhhhhchhcHHHHHhhh--------hhHHhhHHhhhh---HHHHHHHHHHhHHHHHHHHHHHHhHHHHH
Q 027720 130 KLAKVKAQVSEVKGVMMDNIEKVLDRG--------EKIELLVDRTEN---LRSQAQDFRQQGTQMRRKMWFQNMKIKLI 197 (219)
Q Consensus 130 kl~~i~~~v~~vk~im~~ni~~~l~Rg--------e~le~L~~ks~~---L~~~s~~f~~~s~~l~~~~~~~~~k~~ii 197 (219)
=|.++++.-.+++. .+|+.++.+-- ++||++..+-+. |+..+..+...|++-+.....=|.+..+.
T Consensus 119 ~IQk~Kk~ynd~r~--~~n~~~~n~el~~v~~im~~niedvl~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~ 195 (216)
T KOG0862|consen 119 FIQKTKKRYNDTRS--QRNLLKLNQELQDVQRIMVENLEDVLQRGEVLNALSSMASELSSESRKYPKTAKGINRKSLIR 195 (216)
T ss_pred HHHHHHHHhcCcHH--HHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHH
Confidence 46677777777765 45555554322 345555544444 45667778777766665555555554443
No 154
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=31.11 E-value=64 Score=22.62 Aligned_cols=31 Identities=16% Similarity=0.236 Sum_probs=19.3
Q ss_pred HHHHhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 027720 175 DFRQQGTQMRRKMWFQNMKIKLIVLGIIIAL 205 (219)
Q Consensus 175 ~f~~~s~~l~~~~~~~~~k~~iii~~vv~~~ 205 (219)
+|-+.+-.....-.|||+.+++...++.+++
T Consensus 35 ~YL~~~y~y~~sh~WRN~GIli~f~i~f~~~ 65 (103)
T PF06422_consen 35 DYLEESYGYSYSHRWRNFGILIAFWIFFIVL 65 (103)
T ss_pred HHHhhhccccccchhhhHHHHHHHHHHHHHH
Confidence 4555555666677899988766655443333
No 155
>PF05440 MtrB: Tetrahydromethanopterin S-methyltransferase subunit B; InterPro: IPR008690 The N5-methyltetrahydromethanopterin: coenzyme M (2.1.1.86 from EC) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump [].; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=31.08 E-value=57 Score=22.83 Aligned_cols=20 Identities=30% Similarity=0.316 Sum_probs=11.9
Q ss_pred HHHHHhHHHHHHHHHHHHHH
Q 027720 187 MWFQNMKIKLIVLGIIIALI 206 (219)
Q Consensus 187 ~~~~~~k~~iii~~vv~~~~ 206 (219)
=...|.++-+++++++..++
T Consensus 74 G~~tn~fyGf~igL~i~~lv 93 (97)
T PF05440_consen 74 GIFTNMFYGFIIGLVIAGLV 93 (97)
T ss_pred hhhhhHHHHHHHHHHHHHHH
Confidence 44556666777776654443
No 156
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=31.07 E-value=71 Score=19.77 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=8.1
Q ss_pred hhhhHHhhHHhhhhHHHHH
Q 027720 155 RGEKIELLVDRTENLRSQA 173 (219)
Q Consensus 155 Rge~le~L~~ks~~L~~~s 173 (219)
=|.|||+|+..-.+|..++
T Consensus 33 M~~RIDdLE~si~dl~~qa 51 (54)
T PF06825_consen 33 MSSRIDDLEKSIADLMTQA 51 (54)
T ss_dssp HHHHHHCCHHHH-------
T ss_pred HHhhHHHHHHHHHHHHHhc
Confidence 3667777776666665554
No 157
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=30.55 E-value=2.2e+02 Score=20.91 Aligned_cols=14 Identities=21% Similarity=0.482 Sum_probs=5.3
Q ss_pred HHHHHHHhhhhhhh
Q 027720 131 LAKVKAQVSEVKGV 144 (219)
Q Consensus 131 l~~i~~~v~~vk~i 144 (219)
|..+-.++|+..++
T Consensus 70 Id~vd~klDe~~ei 83 (126)
T PF07889_consen 70 IDRVDDKLDEQKEI 83 (126)
T ss_pred HHHHHhhHHHHHHH
Confidence 33333333333333
No 158
>COG3771 Predicted membrane protein [Function unknown]
Probab=29.92 E-value=38 Score=23.17 Aligned_cols=13 Identities=23% Similarity=0.411 Sum_probs=8.9
Q ss_pred HHHHHHHHhcCCC
Q 027720 205 LILIIVLSVCGGF 217 (219)
Q Consensus 205 ~~~~i~~~~c~gf 217 (219)
+-+++-|.+||+|
T Consensus 51 ~G~~lgwli~g~f 63 (97)
T COG3771 51 AGFALGWLICGLF 63 (97)
T ss_pred HHHHHHHHHHHHH
Confidence 3455667789887
No 159
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=29.69 E-value=3e+02 Score=26.56 Aligned_cols=20 Identities=15% Similarity=0.255 Sum_probs=11.7
Q ss_pred ChhhHHHHHHHHHHHHHhhh
Q 027720 74 GRQVPIAFLERVKEDFIKRY 93 (219)
Q Consensus 74 ~~~~af~fL~~i~~~f~~~~ 93 (219)
+...++.||.+-.+.|++.|
T Consensus 533 ~~~E~l~lL~~a~~vlreeY 552 (717)
T PF10168_consen 533 SPQECLELLSQATKVLREEY 552 (717)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666554
No 160
>PF03238 ESAG1: ESAG protein; InterPro: IPR004922 Trypanosoma brucei is the causative agent of sleeping sickness in humans and nagana in cattle. The parasite lives extracellularly in the blood and tissue fluids of the mammalian host, and is transmitted by the bite of infected tsetse. Each variant surface glycoprotein (Vsg) expression site (ES) in bloodstream-form T. brucei is a polycistronic transcription unit containing several distinct expression site-associated genes (esag), in addition to a single vsg gene. They are co-transcribed with the gene encoding the VSG protein, forming the surface coat of the parasite. ESAG1 genes from different ESs encode a highly polymorphic family of membrane-associated glycoproteins, whose function is unknown [].
Probab=29.68 E-value=1.8e+02 Score=23.49 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=41.2
Q ss_pred hcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHH
Q 027720 147 DNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVLGII 202 (219)
Q Consensus 147 ~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~~s~~l~~~~~~~~~k~~iii~~vv 202 (219)
+.++|++.-|..+.+|+.|...|=..-.+-.+.-|+.=--...+.-|+|..|+=|+
T Consensus 7 dKLEKLISyGN~MGDLVaKvGGLFAeVNESVRaVRkeiP~ALikaNKYYTAiAEI~ 62 (231)
T PF03238_consen 7 DKLEKLISYGNEMGDLVAKVGGLFAEVNESVRAVRKEIPGALIKANKYYTAIAEIV 62 (231)
T ss_pred hhHHHHHHcCcchhhHHHhccchhHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999776665545444444456777888887776543
No 161
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=29.53 E-value=3e+02 Score=23.11 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=11.2
Q ss_pred cHHHHHhhhhhHHhhHHhhhhH
Q 027720 148 NIEKVLDRGEKIELLVDRTENL 169 (219)
Q Consensus 148 ni~~~l~Rge~le~L~~ks~~L 169 (219)
+..++-++.++++..+++.+.+
T Consensus 31 ~~~~~~e~~~~~~e~~~kaeea 52 (306)
T PF04888_consen 31 QEKKAEEKAEEIEEAQEKAEEA 52 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555555555555444333
No 162
>PHA02692 hypothetical protein; Provisional
Probab=29.41 E-value=43 Score=21.85 Aligned_cols=6 Identities=33% Similarity=0.368 Sum_probs=2.2
Q ss_pred hhhhhh
Q 027720 139 SEVKGV 144 (219)
Q Consensus 139 ~~vk~i 144 (219)
|-|+.+
T Consensus 25 ~vVksV 30 (70)
T PHA02692 25 NIVRTV 30 (70)
T ss_pred HHHHHH
Confidence 333333
No 163
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=29.35 E-value=4.1e+02 Score=23.61 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=18.5
Q ss_pred HHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhH
Q 027720 130 KLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENL 169 (219)
Q Consensus 130 kl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L 169 (219)
.+.+.-+...++=.-..-++=.+-||+++|+..-++..+.
T Consensus 109 sls~al~~~~~~F~~~~~~~v~~gE~~G~L~~~l~~la~y 148 (397)
T COG1459 109 SLSEALAQLPGVFPDLYVAMVAAGERSGNLDEVLQRLAKY 148 (397)
T ss_pred cHHHHHHhCcccCCHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3444444443333333334444556666666554444333
No 164
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=29.29 E-value=27 Score=27.08 Aligned_cols=14 Identities=50% Similarity=0.921 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHhc
Q 027720 201 IIIALILIIVLSVC 214 (219)
Q Consensus 201 vv~~~~~~i~~~~c 214 (219)
|++++++|+++.+|
T Consensus 84 vi~~Vi~Iv~~Iv~ 97 (179)
T PF13908_consen 84 VICGVIAIVVLIVC 97 (179)
T ss_pred hhhHHHHHHHhHhh
Confidence 33333344444555
No 165
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=28.72 E-value=56 Score=20.95 Aligned_cols=9 Identities=11% Similarity=0.184 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 027720 195 KLIVLGIII 203 (219)
Q Consensus 195 ~iii~~vv~ 203 (219)
|+++.+++.
T Consensus 2 WIiiSIvLa 10 (66)
T PF07438_consen 2 WIIISIVLA 10 (66)
T ss_pred hhhHHHHHH
Confidence 444444433
No 166
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=28.63 E-value=2.3e+02 Score=20.61 Aligned_cols=44 Identities=20% Similarity=0.314 Sum_probs=25.0
Q ss_pred hhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHHhHHHHHHH
Q 027720 143 GVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRK 186 (219)
Q Consensus 143 ~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~~s~~l~~~ 186 (219)
....+|-+.+|+.-..++.++.-.+.++.+-........+++.+
T Consensus 51 ~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~e 94 (132)
T PF10392_consen 51 SQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSE 94 (132)
T ss_pred HHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666666666666666665555555555555555555543
No 167
>PLN03223 Polycystin cation channel protein; Provisional
Probab=28.42 E-value=94 Score=32.14 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=36.9
Q ss_pred hhHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHH
Q 027720 128 ISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRS 171 (219)
Q Consensus 128 ~dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~ 171 (219)
.|.+.+.++.+-+++.-+.++=-++++|+++|.++++|-.+|..
T Consensus 1580 ~~~L~~s~erL~~~Q~~l~egQ~k~~~~Q~~la~~q~kl~~l~~ 1623 (1634)
T PLN03223 1580 VDQLQQSLERLAEVQRELAEGQVKVIEGQKQMAERQSRLSQLEN 1623 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 46777788888888999999999999999999999988777654
No 168
>PHA01811 hypothetical protein
Probab=28.36 E-value=74 Score=20.31 Aligned_cols=18 Identities=33% Similarity=0.534 Sum_probs=14.5
Q ss_pred CeeEEEECCeEEEEEEeC
Q 027720 44 NKFTYNCDGHTFNYLVDD 61 (219)
Q Consensus 44 ~k~~~~~~~~~~~~l~~~ 61 (219)
.-.+....||.+||+-++
T Consensus 5 divtlrvkgyi~hyldd~ 22 (78)
T PHA01811 5 DIVTLRVKGYILHYLDDD 22 (78)
T ss_pred cEEEEEEeeEEEEEEcCc
Confidence 456778899999999764
No 169
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=28.08 E-value=1.7e+02 Score=20.57 Aligned_cols=61 Identities=18% Similarity=0.246 Sum_probs=36.7
Q ss_pred HHHHHHHhhhCCCCCcccccccchhhhhHHHHHhhhhhcCCchhhhHHHHHHHHhhhhhhhchhcHHHHHhh
Q 027720 84 RVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDR 155 (219)
Q Consensus 84 ~i~~~f~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~dkl~~i~~~v~~vk~im~~ni~~~l~R 155 (219)
+.+++|..-+...... . .+....+.+..+.|+ - .+.+..-+.++..-+.-+.+|+..++.+
T Consensus 2 ea~~ef~~I~~n~~lt------~-~e~~~~l~~Wa~~~~---v-~~~~~~f~~~~~~~~~~~~~~~~~vi~~ 62 (113)
T PF02520_consen 2 EARKEFFQIFQNPNLT------K-AEIEEQLDEWAEKYG---V-QDQYNEFKAQVQAQKEEVRKNVTAVISN 62 (113)
T ss_pred hHHHHHHHHHcCCCCC------H-HHHHHHHHHHHHHCC---c-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777766432111 1 345566666666653 1 2677777777777777777777666655
No 170
>COG3685 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.88 E-value=2.2e+02 Score=21.93 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=8.5
Q ss_pred chhcHHHHHhhhhhHHhh
Q 027720 145 MMDNIEKVLDRGEKIELL 162 (219)
Q Consensus 145 m~~ni~~~l~Rge~le~L 162 (219)
.-+-++++++-|+.|-.+
T Consensus 73 ~cda~~giiaegq~i~~~ 90 (167)
T COG3685 73 TCDAMEGLIAEGQEIMEE 90 (167)
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 334445555555554433
No 171
>PRK10132 hypothetical protein; Provisional
Probab=27.50 E-value=2.3e+02 Score=20.16 Aligned_cols=18 Identities=11% Similarity=0.119 Sum_probs=8.2
Q ss_pred hhhHHhhHHhhhhHHHHH
Q 027720 156 GEKIELLVDRTENLRSQA 173 (219)
Q Consensus 156 ge~le~L~~ks~~L~~~s 173 (219)
|+.++.+.++.+..-..+
T Consensus 40 ~~~~~~lR~r~~~~L~~a 57 (108)
T PRK10132 40 KGEAEAARRKAQALLKET 57 (108)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555444444333
No 172
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=27.44 E-value=1.7e+02 Score=23.34 Aligned_cols=8 Identities=13% Similarity=0.322 Sum_probs=3.1
Q ss_pred HHHhhhhh
Q 027720 135 KAQVSEVK 142 (219)
Q Consensus 135 ~~~v~~vk 142 (219)
.++++...
T Consensus 107 ~~~i~~~~ 114 (204)
T PF00517_consen 107 EKEISNYT 114 (204)
T ss_dssp HHHHHHHH
T ss_pred HHHhcccH
Confidence 34444333
No 173
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=27.38 E-value=1.1e+02 Score=16.97 Aligned_cols=10 Identities=10% Similarity=0.052 Sum_probs=3.9
Q ss_pred HHhHHHHHHH
Q 027720 190 QNMKIKLIVL 199 (219)
Q Consensus 190 ~~~k~~iii~ 199 (219)
+-.++..++.
T Consensus 6 ~~H~W~Gl~~ 15 (37)
T PF13706_consen 6 KLHRWLGLIL 15 (37)
T ss_pred HHHHHHHHHH
Confidence 3334443333
No 174
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=27.24 E-value=1.9e+02 Score=24.57 Aligned_cols=17 Identities=12% Similarity=0.307 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHhhh
Q 027720 77 VPIAFLERVKEDFIKRY 93 (219)
Q Consensus 77 ~af~fL~~i~~~f~~~~ 93 (219)
.+-.||+.++++|....
T Consensus 245 ~~~~~Ldklh~eit~~L 261 (384)
T KOG0972|consen 245 NVGPYLDKLHKEITKAL 261 (384)
T ss_pred chhHHHHHHHHHHHHHH
Confidence 35678888888887765
No 175
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=27.22 E-value=3.1e+02 Score=22.18 Aligned_cols=56 Identities=16% Similarity=0.203 Sum_probs=31.9
Q ss_pred hhhHHHHHhhhhhcCCchhhhHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhh
Q 027720 109 EFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTEN 168 (219)
Q Consensus 109 ~f~~~l~~~~~~~~~~~~~~dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~ 168 (219)
+.+..++++|+.. .-. +.|.=..++.++.--+..+.- +.+++++..++++.++-+.
T Consensus 135 d~~~Ql~Rl~~Rd-~ls-e~dAe~Rl~sQmp~~~k~~~a--~~Vi~Nng~~~~l~~qv~~ 190 (225)
T KOG3220|consen 135 DEELQLERLVERD-ELS-EEDAENRLQSQMPLEKKCELA--DVVIDNNGSLEDLYEQVEK 190 (225)
T ss_pred CcHHHHHHHHHhc-ccc-HHHHHHHHHhcCCHHHHHHhh--heeecCCCChHHHHHHHHH
Confidence 4456777777664 112 225555666665544444433 3377777777777665544
No 176
>cd00472 Ribosomal_L24e_L24 Ribosomal protein L24e/L24 is a ribosomal protein found in eukaryotes (L24) and in archaea (L24e, distinct from archaeal L24). L24e/L24 is located on the surface of the large subunit, adjacent to proteins L14 and L3, and near the translation factor binding site. L24e/L24 appears to play a role in the kinetics of peptide synthesis, and may be involved in interactions between the large and small subunits, either directly or through other factors. In mouse, a deletion mutation in L24 has been identified as the cause for the belly spot and tail (Bst) mutation that results in disrupted pigmentation, somitogenesis and retinal cell fate determination. L24 may be an important protein in eukaryotic reproduction: in shrimp, L24 expression is elevated in the ovary, suggesting a role in oogenesis, and in Arabidopsis, L24 has been proposed to have a specific function in gynoecium development. No protein with sequence or structural homology to L24e/L24 has been identifi
Probab=27.15 E-value=77 Score=19.58 Aligned_cols=23 Identities=22% Similarity=0.405 Sum_probs=18.7
Q ss_pred cCCCCCCeeEEEECCeEEEEEEe
Q 027720 38 KLPSSNNKFTYNCDGHTFNYLVD 60 (219)
Q Consensus 38 ~i~~~~~k~~~~~~~~~~~~l~~ 60 (219)
+|.|++.+.-+..|+..|+|+..
T Consensus 12 ~I~PG~G~~~Vr~Dgkv~~F~s~ 34 (54)
T cd00472 12 KIYPGHGKMYVRNDGKVFRFCSS 34 (54)
T ss_pred eecCCCccEEEecCCCEEEEECH
Confidence 67888888888889999988763
No 177
>PRK14125 cell division suppressor protein YneA; Provisional
Probab=27.07 E-value=99 Score=21.78 Aligned_cols=14 Identities=7% Similarity=0.278 Sum_probs=8.6
Q ss_pred HHHHHHhHHHHHHH
Q 027720 186 KMWFQNMKIKLIVL 199 (219)
Q Consensus 186 ~~~~~~~k~~iii~ 199 (219)
++.|+.+++.+++.
T Consensus 2 ~~~~~~~~~~ii~~ 15 (103)
T PRK14125 2 KLKESKIHVSIFFV 15 (103)
T ss_pred chHHHHHHHHHHHH
Confidence 46677777666443
No 178
>PF00306 ATP-synt_ab_C: ATP synthase alpha/beta chain, C terminal domain; InterPro: IPR000793 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the C-terminal domain, which forms a left-handed superhelix composed of 4-5 individual helices. The C-terminal domain can vary between the alpha and beta subunits, and between different ATPases []. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3OAA_U 2F43_B 1MAB_B 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B ....
Probab=27.05 E-value=1.1e+02 Score=21.51 Aligned_cols=40 Identities=15% Similarity=0.327 Sum_probs=29.6
Q ss_pred hhcHHHHHhhhhhHHhhHHh--hhhHHHHHHHHHHhHHHHHH
Q 027720 146 MDNIEKVLDRGEKIELLVDR--TENLRSQAQDFRQQGTQMRR 185 (219)
Q Consensus 146 ~~ni~~~l~Rge~le~L~~k--s~~L~~~s~~f~~~s~~l~~ 185 (219)
...+..+|.++..|+.+..- +++|....+.....++.++.
T Consensus 4 ~~~l~~~Laq~~EL~~~~q~vG~d~L~~~~k~~l~~g~~i~e 45 (113)
T PF00306_consen 4 AGQLKLILAQYRELEEFVQFVGSDALDDEDKLILERGRRIRE 45 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTCSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence 45566777888888888876 67788777777777777776
No 179
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=26.77 E-value=2.7e+02 Score=21.63 Aligned_cols=47 Identities=15% Similarity=0.270 Sum_probs=22.0
Q ss_pred HHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHH
Q 027720 132 AKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQ 178 (219)
Q Consensus 132 ~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~ 178 (219)
...++++++--.-+.+.|+.+=+-..+...|..|+..|..+-..|.+
T Consensus 119 d~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 119 DQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444555555565555555555543
No 180
>KOG4827 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.60 E-value=43 Score=26.61 Aligned_cols=19 Identities=16% Similarity=0.513 Sum_probs=13.5
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q 027720 185 RKMWFQNMKIKLIVLGIII 203 (219)
Q Consensus 185 ~~~~~~~~k~~iii~~vv~ 203 (219)
.+-+|.+||||||-.++|+
T Consensus 238 eRSF~AKYWMYiiPlglVV 256 (279)
T KOG4827|consen 238 ERSFLAKYWMYIIPLGLVV 256 (279)
T ss_pred chhHHHHHHHhhccchhhh
Confidence 4567889999988655444
No 181
>PF10875 DUF2670: Protein of unknown function (DUF2670); InterPro: IPR022714 This bacterial family of proteins has no known function and appears to be restricted to Rickettsiaceae.
Probab=26.59 E-value=88 Score=22.80 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=18.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Q 027720 187 MWFQNMKIKLIVLGIIIALILIIVLS 212 (219)
Q Consensus 187 ~~~~~~k~~iii~~vv~~~~~~i~~~ 212 (219)
.|-=--||+++|+..-++++|++++.
T Consensus 18 lw~iItKWyL~IavaSlI~lyy~v~g 43 (139)
T PF10875_consen 18 LWSIITKWYLIIAVASLITLYYTVLG 43 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45445688999888777777777653
No 182
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=26.49 E-value=2.3e+02 Score=21.02 Aligned_cols=14 Identities=7% Similarity=0.245 Sum_probs=7.3
Q ss_pred CCcChhhHHHHHHH
Q 027720 71 ESVGRQVPIAFLER 84 (219)
Q Consensus 71 ~~~~~~~af~fL~~ 84 (219)
.--|-..|..||++
T Consensus 20 ~~~pv~~al~~ld~ 33 (142)
T PF04048_consen 20 DFNPVELALSLLDD 33 (142)
T ss_pred CCcHHHHHHHhcCC
Confidence 33355556665554
No 183
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=26.47 E-value=3e+02 Score=21.19 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=10.0
Q ss_pred HHHHHHHHhhhhhhhchhcHHHHHh
Q 027720 130 KLAKVKAQVSEVKGVMMDNIEKVLD 154 (219)
Q Consensus 130 kl~~i~~~v~~vk~im~~ni~~~l~ 154 (219)
++.+..++..+..+.+.+.+.+.++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~e~l~ 188 (275)
T PF00664_consen 164 KIRKLSKKYQEANSELNSFLSESLS 188 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccchh
Confidence 3333444444433334444444443
No 184
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=26.31 E-value=72 Score=23.52 Aligned_cols=23 Identities=9% Similarity=0.288 Sum_probs=19.3
Q ss_pred cCCCCCCeeEEEECCeEEEEEEe
Q 027720 38 KLPSSNNKFTYNCDGHTFNYLVD 60 (219)
Q Consensus 38 ~i~~~~~k~~~~~~~~~~~~l~~ 60 (219)
+|.|++++..+..+|.+|+|+..
T Consensus 13 kIyPG~G~~fVR~DGkvf~Fcss 35 (131)
T PRK14891 13 EIEPGTGTMFVRKDGTVLHFVDS 35 (131)
T ss_pred cccCCCCcEEEecCCCEEEEecH
Confidence 68888888888889999988764
No 185
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=26.30 E-value=96 Score=23.35 Aligned_cols=14 Identities=14% Similarity=0.318 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHhH
Q 027720 180 GTQMRRKMWFQNMK 193 (219)
Q Consensus 180 s~~l~~~~~~~~~k 193 (219)
..+++|.-+|++++
T Consensus 85 ~sk~~r~n~~kk~~ 98 (147)
T PF05659_consen 85 CSKVRRWNLYKKPR 98 (147)
T ss_pred hccccHHHHHhhHh
Confidence 33444444444443
No 186
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=26.14 E-value=1.2e+02 Score=16.41 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=7.5
Q ss_pred HHHHHHHhHHHHHHHH
Q 027720 185 RKMWFQNMKIKLIVLG 200 (219)
Q Consensus 185 ~~~~~~~~k~~iii~~ 200 (219)
|+.|++-.++.-++.+
T Consensus 2 r~~~~~~H~~~g~~~~ 17 (34)
T PF13172_consen 2 RKFWRKIHRWLGLIAA 17 (34)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3445555554444443
No 187
>PF03607 DCX: Doublecortin; InterPro: IPR003533 X-linked lissencephaly is a severe brain malformation affecting males. Recently it has been demonstrated that the doublecortin gene is implicated in this disorder []. Doublecortin was found to bind to the microtubule cytoskeleton. In vivo and in vitro assays show that Doublecortin stabilises microtubules and causes bundling []. Doublecortin is a basic protein with an iso-electric point of 10, typical of microtubule-binding proteins. However, its sequence contains no known microtubule-binding domain(s). The detailed sequence analysis of Doublecortin and Doublecortin-like proteins allowed the identification of an evolutionarily conserved Doublecortin (DC) domain. This domain is found in the N terminus of proteins and consists of one or two tandemly repeated copies of an around 80 amino acids region. It has been suggested that the first DC domain of Doublecortin binds tubulin and enhances microtubule polymerisation []. Some proteins known to contain a DC domain are listed below: Doublecortin. It is required for neuronal migration []. A large number of point mutations in the human DCX gene leading to lissencephaly are located within the DC domains []. Human serine/threonine-protein kinase DCAMKL1. It is a probable kinase that may be involved in a calcium-signaling pathway controling neuronal migration in the developing brain []. Retinitis pigmentosa 1 protein. It could play a role in the differentiation of photoreceptor cells. Mutation in the human RP1 gene cause retinitis pigmentosa of type 1 []. ; GO: 0035556 intracellular signal transduction; PDB: 1UF0_A 1MG4_A 1MFW_A 2DNF_A 2XRP_I 2BQQ_A 1MJD_A.
Probab=26.11 E-value=1e+02 Score=19.18 Aligned_cols=48 Identities=21% Similarity=0.304 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHhcCCCC-CCeeEEEECCeEEEEEE--eCCEEEEEEecCC
Q 027720 25 TGNFTGIAAQCLQKLPSS-NNKFTYNCDGHTFNYLV--DDGFTYCVVAVES 72 (219)
Q Consensus 25 ~~~~~~~a~~il~~i~~~-~~k~~~~~~~~~~~~l~--~~~~~~~~v~d~~ 72 (219)
-.+|+.+...+-+++... .-+..|+.+|...+-+. .+|-.|+|...+.
T Consensus 8 ~~s~e~lL~~it~~v~l~~gVr~lyt~~G~~V~~l~~l~dg~~yVa~g~e~ 58 (60)
T PF03607_consen 8 FRSFEQLLDEITEKVQLPSGVRKLYTLDGKRVKSLDELEDGGSYVASGREP 58 (60)
T ss_dssp HSSHHHHHHHHHHSSSSTTS-SEEEETTSSEESSGGGS-TTEEEEEESSSS
T ss_pred hcCHHHHHHHHHhhcCCCcccceEECCCCCEeCCHHHHCCCCEEEEEcCCc
Confidence 367889888888887754 35567788886665443 4788899986553
No 188
>PF14004 DUF4227: Protein of unknown function (DUF4227)
Probab=26.09 E-value=1.2e+02 Score=19.97 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=15.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Q 027720 187 MWFQNMKIKLIVLGIIIALILII 209 (219)
Q Consensus 187 ~~~~~~k~~iii~~vv~~~~~~i 209 (219)
.||+..|..++..+..+++-+.+
T Consensus 2 ~~~~~ik~~~LF~~~T~lfYy~~ 24 (71)
T PF14004_consen 2 RWLDMIKFFLLFTGCTLLFYYAI 24 (71)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888777766655554433
No 189
>PF12277 DUF3618: Protein of unknown function (DUF3618); InterPro: IPR022062 This domain family is found in bacteria, and is approximately 50 amino acids in length.
Probab=25.74 E-value=1.5e+02 Score=17.68 Aligned_cols=27 Identities=4% Similarity=0.265 Sum_probs=22.0
Q ss_pred HHHHHHHhhhhhhhchhcHHHHHhhhh
Q 027720 131 LAKVKAQVSEVKGVMMDNIEKVLDRGE 157 (219)
Q Consensus 131 l~~i~~~v~~vk~im~~ni~~~l~Rge 157 (219)
...++.+++.++.-|.++++.+-.|=.
T Consensus 5 ~~~ie~dIe~tR~~La~tvd~L~~r~~ 31 (49)
T PF12277_consen 5 PDEIERDIERTRAELAETVDELAARLS 31 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 468899999999999888887776654
No 190
>PF03555 Flu_C_NS2: Influenza C non-structural protein (NS2); InterPro: IPR005188 The influenza C virus genome consists of seven single-stranded RNA segments. The shortest RNA segment encodes a 286 amino acid non-structural protein NS1 IPR005187 from INTERPRO as well as the NS2 protein. The NS2 protein is only about 60 amino acids in length and of unknown function.
Probab=25.44 E-value=1.4e+02 Score=17.79 Aligned_cols=31 Identities=19% Similarity=0.390 Sum_probs=19.6
Q ss_pred hhchhcHHHHHhhhhhHHhhHH-hhhhHHHHH
Q 027720 143 GVMMDNIEKVLDRGEKIELLVD-RTENLRSQA 173 (219)
Q Consensus 143 ~im~~ni~~~l~Rge~le~L~~-ks~~L~~~s 173 (219)
+.|.=--.++|+|+|.||.-.+ +.+.|+.+.
T Consensus 5 nlmafvatkmlerqedldtctemqvekmkast 36 (57)
T PF03555_consen 5 NLMAFVATKMLERQEDLDTCTEMQVEKMKAST 36 (57)
T ss_pred hHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhH
Confidence 3444455789999999986544 445555443
No 191
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=25.26 E-value=59 Score=22.26 Aligned_cols=7 Identities=43% Similarity=0.966 Sum_probs=3.2
Q ss_pred HHHHHhc
Q 027720 208 IIVLSVC 214 (219)
Q Consensus 208 ~i~~~~c 214 (219)
+|.+.+|
T Consensus 48 VilwfvC 54 (94)
T PF05393_consen 48 VILWFVC 54 (94)
T ss_pred HHHHHHH
Confidence 3444455
No 192
>PRK13865 type IV secretion system protein VirB8; Provisional
Probab=25.26 E-value=3.3e+02 Score=22.15 Aligned_cols=7 Identities=14% Similarity=0.558 Sum_probs=3.6
Q ss_pred HHHHHHH
Q 027720 172 QAQDFRQ 178 (219)
Q Consensus 172 ~s~~f~~ 178 (219)
.+..|..
T Consensus 21 ~a~~~E~ 27 (229)
T PRK13865 21 EVEAFQT 27 (229)
T ss_pred HHHHHHH
Confidence 3455555
No 193
>PF15106 TMEM156: TMEM156 protein family
Probab=25.04 E-value=46 Score=26.73 Aligned_cols=28 Identities=21% Similarity=0.393 Sum_probs=16.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 027720 183 MRRKMWFQNMKIKLIVLGIIIALILIIV 210 (219)
Q Consensus 183 l~~~~~~~~~k~~iii~~vv~~~~~~i~ 210 (219)
++.-++--+..||+++.+|.++++++|+
T Consensus 167 vkn~~CsmKITWYvLVllVfiflii~iI 194 (226)
T PF15106_consen 167 VKNSTCSMKITWYVLVLLVFIFLIILII 194 (226)
T ss_pred ccCceeehhhHHHHHHHHHHHHHHHHHH
Confidence 3445666667777777666555544443
No 194
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=24.66 E-value=1.9e+02 Score=19.69 Aligned_cols=10 Identities=10% Similarity=0.444 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 027720 201 IIIALILIIV 210 (219)
Q Consensus 201 vv~~~~~~i~ 210 (219)
+++..++++|
T Consensus 23 v~~~a~~~v~ 32 (97)
T PF04999_consen 23 VLISALGVVY 32 (97)
T ss_pred HHHHHHHHHH
Confidence 3333334444
No 195
>COG1723 Uncharacterized conserved protein [Function unknown]
Probab=24.42 E-value=1.5e+02 Score=25.50 Aligned_cols=67 Identities=12% Similarity=0.157 Sum_probs=36.4
Q ss_pred HHHHHhhhhhHHhhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 027720 149 IEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVLGIIIALILIIVLSVCGGF 217 (219)
Q Consensus 149 i~~~l~Rge~le~L~~ks~~L~~~s~~f~~~s~~l~~~~~~~~~k~~iii~~vv~~~~~~i~~~~c~gf 217 (219)
+..-|+=+.|.+.|..|-+-..+-...+..+... +++-.=-|.++++|++-|++.++=|++..|+++
T Consensus 265 ~~~yLdI~~RvnvLN~Rl~vi~d~l~il~e~ln~--~~s~~lEWivIiLI~~eVllsl~~i~~~~~~~~ 331 (331)
T COG1723 265 VREYLDINPRVNVLNRRLEVISDLLDILNEQLNH--SHSTRLEWIVIILIGLEVLLSLYNIIVKYIGAL 331 (331)
T ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhh--cccceeEEEehhHHHHHHHHHHHHHHHHHhcCC
Confidence 3444455677777777766666665555443221 111111223445555666666677777777653
No 196
>PHA02947 S-S bond formation pathway protein; Provisional
Probab=24.30 E-value=69 Score=25.78 Aligned_cols=15 Identities=20% Similarity=0.231 Sum_probs=10.4
Q ss_pred HHHHHHHHHhcCCCC
Q 027720 28 FTGIAAQCLQKLPSS 42 (219)
Q Consensus 28 ~~~~a~~il~~i~~~ 42 (219)
+.....+.|+++..+
T Consensus 11 Y~~f~~ryL~kL~~~ 25 (215)
T PHA02947 11 YNLFIERYLQNLSLY 25 (215)
T ss_pred HHHHHHHHHHHHHhc
Confidence 456667788887655
No 197
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=23.98 E-value=3.5e+02 Score=21.46 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=15.1
Q ss_pred hhHHhhHHhhhhHHHHHHHHHHhHHHHHH
Q 027720 157 EKIELLVDRTENLRSQAQDFRQQGTQMRR 185 (219)
Q Consensus 157 e~le~L~~ks~~L~~~s~~f~~~s~~l~~ 185 (219)
+.+++|..-...|.........+++.+.+
T Consensus 67 eEledLk~~~~~lEE~~~~L~aq~rqlEk 95 (193)
T PF14662_consen 67 EELEDLKTLAKSLEEENRSLLAQARQLEK 95 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555443
No 198
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=23.57 E-value=74 Score=29.09 Aligned_cols=13 Identities=15% Similarity=0.455 Sum_probs=5.6
Q ss_pred hHHHHHHHHhhhhh
Q 027720 129 SKLAKVKAQVSEVK 142 (219)
Q Consensus 129 dkl~~i~~~v~~vk 142 (219)
++++ +-.++.++.
T Consensus 432 ~PlD-IS~eL~~vn 444 (490)
T PF00523_consen 432 DPLD-ISSELGQVN 444 (490)
T ss_dssp SHHH-HHHHHHHHH
T ss_pred Cccc-hhhHHHHHH
Confidence 3444 444444433
No 199
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=23.49 E-value=4.6e+02 Score=22.28 Aligned_cols=50 Identities=16% Similarity=0.410 Sum_probs=27.3
Q ss_pred hHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHHhHHHHHHH
Q 027720 129 SKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRK 186 (219)
Q Consensus 129 dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~~s~~l~~~ 186 (219)
.++..+..++++.+.. ++..+.+..|...++.+...+..|+.....+...
T Consensus 138 q~I~~L~k~le~~~k~--------~e~~~~~~el~aei~~lk~~~~e~~eki~~la~e 187 (294)
T COG1340 138 QKIKELRKELEDAKKA--------LEENEKLKELKAEIDELKKKAREIHEKIQELANE 187 (294)
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666655544 4444555555555555555555555555444443
No 200
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=23.38 E-value=1.8e+02 Score=19.75 Aligned_cols=12 Identities=0% Similarity=0.382 Sum_probs=6.4
Q ss_pred HHHHHHHhHHHH
Q 027720 185 RKMWFQNMKIKL 196 (219)
Q Consensus 185 ~~~~~~~~k~~i 196 (219)
.+...|.+-+.+
T Consensus 29 N~sfirdFvLVi 40 (84)
T PF06143_consen 29 NRSFIRDFVLVI 40 (84)
T ss_pred ChHHHHHHHHHH
Confidence 345556666533
No 201
>PF13044 DUF3904: Protein of unknown function (DUF3904)
Probab=23.36 E-value=87 Score=25.98 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHhc
Q 027720 179 QGTQMRRKMWFQNMKIKLIVLGIIIALI-LIIVLSVC 214 (219)
Q Consensus 179 ~s~~l~~~~~~~~~k~~iii~~vv~~~~-~~i~~~~c 214 (219)
+-+.+----||.-+--|||++++|++++ +.+=++.|
T Consensus 399 ~ikevtgtswwmvmihyiivgliviv~vv~glklwgc 435 (436)
T PF13044_consen 399 NIKEVTGTSWWMVMIHYIIVGLIVIVVVVFGLKLWGC 435 (436)
T ss_pred chhhccCcchHHHHHHHHHHHHHHHHHhhhhhhhccc
Confidence 3455556678888777788777655433 33335555
No 202
>PRK12430 putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional
Probab=23.32 E-value=1.4e+02 Score=26.18 Aligned_cols=41 Identities=17% Similarity=0.361 Sum_probs=23.7
Q ss_pred HHhhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHH
Q 027720 159 IELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVL 199 (219)
Q Consensus 159 le~L~~ks~~L~~~s~~f~~~s~~l~~~~~~~~~k~~iii~ 199 (219)
.|+..+|+.+---.++.|-.+-++-+|-+|-|.+++-++-.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (379)
T PRK12430 103 KDEVIKKTNDTLLQKNNFNRSLKNFSKTSWKKTMFYRIIPL 143 (379)
T ss_pred hhHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455666556667777777777666533
No 203
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=23.30 E-value=2.1e+02 Score=25.41 Aligned_cols=24 Identities=8% Similarity=0.209 Sum_probs=18.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhc
Q 027720 191 NMKIKLIVLGIIIALILIIVLSVC 214 (219)
Q Consensus 191 ~~k~~iii~~vv~~~~~~i~~~~c 214 (219)
-|+|.+++.++.|+++|+++++.|
T Consensus 383 ~F~~vv~~~~~~~~~lf~~i~~~~ 406 (414)
T KOG2662|consen 383 AFKWVVGITFTLCIVLFVVILGYA 406 (414)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 457777778888888888877766
No 204
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=23.25 E-value=2.6e+02 Score=21.49 Aligned_cols=44 Identities=20% Similarity=0.374 Sum_probs=33.2
Q ss_pred HHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHHhH
Q 027720 131 LAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQG 180 (219)
Q Consensus 131 l~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~~s 180 (219)
+-.+-++++..-..|+.|- +.+|+.+.++-..|+.+|......+
T Consensus 32 lv~la~~iq~Ad~~~~~~t------~~kL~~I~eQi~~Lq~QA~~ile~~ 75 (159)
T PF10504_consen 32 LVDLAQQIQKADSAMRANT------CNKLEVIAEQIRFLQEQARKILEEA 75 (159)
T ss_pred HHHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777787777 6688888888888888888777754
No 205
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.11 E-value=1.3e+02 Score=19.68 Aligned_cols=8 Identities=25% Similarity=0.384 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 027720 198 VLGIIIAL 205 (219)
Q Consensus 198 i~~vv~~~ 205 (219)
+.++++++
T Consensus 8 l~ivl~ll 15 (71)
T COG3763 8 LLIVLALL 15 (71)
T ss_pred HHHHHHHH
Confidence 33333333
No 206
>PRK10869 recombination and repair protein; Provisional
Probab=22.98 E-value=5.4e+02 Score=23.90 Aligned_cols=31 Identities=13% Similarity=0.282 Sum_probs=18.1
Q ss_pred hHHHHHHHHhhhhhhhchh---cHHHHHhhhhhH
Q 027720 129 SKLAKVKAQVSEVKGVMMD---NIEKVLDRGEKI 159 (219)
Q Consensus 129 dkl~~i~~~v~~vk~im~~---ni~~~l~Rge~l 159 (219)
..+..+++.+..++...++ +++.+++..+++
T Consensus 296 ~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l 329 (553)
T PRK10869 296 NRLAELEQRLSKQISLARKHHVSPEELPQHHQQL 329 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3466666666666665554 566666555543
No 207
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=22.83 E-value=72 Score=21.56 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=13.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Q 027720 183 MRRKMWFQNMKIKLIVLGIIIALI 206 (219)
Q Consensus 183 l~~~~~~~~~k~~iii~~vv~~~~ 206 (219)
.+++.+.||..+|+.++..+++++
T Consensus 2 INwKvR~kN~~~w~ali~~i~l~v 25 (84)
T PF04531_consen 2 INWKVRFKNKAFWVALISAILLLV 25 (84)
T ss_pred CchhhcccCHHHHHHHHHHHHHHH
Confidence 345666677776666555444433
No 208
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=22.56 E-value=2.5e+02 Score=18.89 Aligned_cols=12 Identities=25% Similarity=0.495 Sum_probs=7.9
Q ss_pred HHHHHHHHHHhh
Q 027720 81 FLERVKEDFIKR 92 (219)
Q Consensus 81 fL~~i~~~f~~~ 92 (219)
+|.++...|...
T Consensus 8 ~l~~v~~~~~~~ 19 (80)
T PRK15326 8 YLDDVSAKFDTG 19 (80)
T ss_pred hHHHHHHHHHHH
Confidence 677777766553
No 209
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=21.94 E-value=3.1e+02 Score=19.64 Aligned_cols=46 Identities=20% Similarity=0.359 Sum_probs=19.4
Q ss_pred HHHHHHHhhhhhhhchhcHHHHHhh----hhhHHhhHHhhhhHHHHHHHH
Q 027720 131 LAKVKAQVSEVKGVMMDNIEKVLDR----GEKIELLVDRTENLRSQAQDF 176 (219)
Q Consensus 131 l~~i~~~v~~vk~im~~ni~~~l~R----ge~le~L~~ks~~L~~~s~~f 176 (219)
+..++.+++++++=|++.-++.-.. ..++|.|+++...|......+
T Consensus 10 ~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~l 59 (112)
T PF07439_consen 10 LGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTL 59 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333221 234455555555544433333
No 210
>PF14150 YesK: YesK-like protein
Probab=21.72 E-value=1.4e+02 Score=20.22 Aligned_cols=36 Identities=25% Similarity=0.417 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHhcCCC
Q 027720 182 QMRRKMWFQNMKIKLI-VLGIIIALILIIVLSVCGGF 217 (219)
Q Consensus 182 ~l~~~~~~~~~k~~ii-i~~vv~~~~~~i~~~~c~gf 217 (219)
-+|++.--|++++.+. +..++++..+.+.+..-||+
T Consensus 18 ~lr~r~p~k~~~~il~~ililis~~~v~~S~f~vGGw 54 (81)
T PF14150_consen 18 LLRKRFPKKQPEIILPLILILISLLTVLISIFLVGGW 54 (81)
T ss_pred HHHHhCCCcchhHHHHHHHHHHHHHHHHHHHheEcch
Confidence 3444444455666655 33444554444544555664
No 211
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=21.71 E-value=5.1e+02 Score=23.25 Aligned_cols=12 Identities=25% Similarity=0.077 Sum_probs=5.3
Q ss_pred hhHHhhhhHHHH
Q 027720 161 LLVDRTENLRSQ 172 (219)
Q Consensus 161 ~L~~ks~~L~~~ 172 (219)
.++..++++.++
T Consensus 169 ~~q~~~~n~~~~ 180 (418)
T cd07912 169 GLQQMATNAAQQ 180 (418)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 212
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=21.64 E-value=2.1e+02 Score=20.14 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=16.3
Q ss_pred HHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHH
Q 027720 135 KAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQ 172 (219)
Q Consensus 135 ~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~ 172 (219)
+..++++...+.++++.+ .+.++.|..+-+.|...
T Consensus 62 ~~~~~e~~~~l~~r~e~i---e~~i~~lek~~~~l~~~ 96 (110)
T TIGR02338 62 KTDKEEAIQELKEKKETL---ELRVKTLQRQEERLREQ 96 (110)
T ss_pred eecHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 344455544444444444 44444444444444444
No 213
>PRK11901 hypothetical protein; Reviewed
Probab=21.40 E-value=98 Score=26.63 Aligned_cols=15 Identities=13% Similarity=0.195 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 027720 197 IVLGIIIALILIIVL 211 (219)
Q Consensus 197 ii~~vv~~~~~~i~~ 211 (219)
-||++|+++|+|.+.
T Consensus 41 GiGilVLlLLIi~Ig 55 (327)
T PRK11901 41 GIGILVLLLLIIAIG 55 (327)
T ss_pred HHHHHHHHHHHHHHh
Confidence 333333333333333
No 214
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=21.32 E-value=1e+02 Score=28.70 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=16.8
Q ss_pred hhHHHHHHHHhhhhhhhchhcH
Q 027720 128 ISKLAKVKAQVSEVKGVMMDNI 149 (219)
Q Consensus 128 ~dkl~~i~~~v~~vk~im~~ni 149 (219)
.+.+..++++++.+.++..+|=
T Consensus 441 ~~~i~~l~~~~~sl~~~v~qnr 462 (561)
T PF00429_consen 441 EDSISALQEQLTSLAEVVLQNR 462 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCc
Confidence 3678888888888888776663
No 215
>PF12279 DUF3619: Protein of unknown function (DUF3619); InterPro: IPR022064 This protein is found in bacteria. Proteins in this family are about 140 amino acids in length. This protein has two conserved sequence motifs: AAR and DDLP.
Probab=21.27 E-value=1.6e+02 Score=21.74 Aligned_cols=19 Identities=16% Similarity=0.580 Sum_probs=12.3
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q 027720 185 RKMWFQNMKIKLIVLGIII 203 (219)
Q Consensus 185 ~~~~~~~~k~~iii~~vv~ 203 (219)
..-||++....+.+..+++
T Consensus 67 ~~~~~~r~~~~~pl~aLv~ 85 (131)
T PF12279_consen 67 GGSWWRRLGLALPLLALVA 85 (131)
T ss_pred CccHHHHHHHHHHHHHHHH
Confidence 4568888886655555443
No 216
>PF13163 DUF3999: Protein of unknown function (DUF3999)
Probab=21.26 E-value=84 Score=28.13 Aligned_cols=22 Identities=5% Similarity=-0.183 Sum_probs=16.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHH
Q 027720 189 FQNMKIKLIVLGIIIALILIIV 210 (219)
Q Consensus 189 ~~~~k~~iii~~vv~~~~~~i~ 210 (219)
|+++.+|.+++++|+++.++.|
T Consensus 406 ~~~~~LW~~Lv~gV~vL~~mA~ 427 (429)
T PF13163_consen 406 WKRWLLWGALVLGVAVLGGMAW 427 (429)
T ss_pred hhhhHHHHHHHHHHHHHHHHhe
Confidence 8888888888887776666554
No 217
>PF05803 Chordopox_L2: Chordopoxvirus L2 protein; InterPro: IPR008447 This family consists of several Chordopoxvirus L2 proteins.
Probab=21.09 E-value=2.1e+02 Score=19.60 Aligned_cols=17 Identities=29% Similarity=0.194 Sum_probs=11.1
Q ss_pred HHHHHHHhHHHHHHHHH
Q 027720 185 RKMWFQNMKIKLIVLGI 201 (219)
Q Consensus 185 ~~~~~~~~k~~iii~~v 201 (219)
-++.||||+..+++++.
T Consensus 59 ~Rlv~RN~~ill~l~l~ 75 (87)
T PF05803_consen 59 IRLVKRNYKILLILALS 75 (87)
T ss_pred HHHHHhhHHHHHHHHHH
Confidence 34677888876666544
No 218
>PRK05529 cell division protein FtsQ; Provisional
Probab=21.00 E-value=88 Score=25.80 Aligned_cols=19 Identities=5% Similarity=0.017 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHhHHHHHHH
Q 027720 181 TQMRRKMWFQNMKIKLIVL 199 (219)
Q Consensus 181 ~~l~~~~~~~~~k~~iii~ 199 (219)
++..|+..||...+...++
T Consensus 25 ~~~~~~~~~r~~~~~~~~~ 43 (255)
T PRK05529 25 RRFTTRIRRRFILLACAVG 43 (255)
T ss_pred hchhhhccchhhhHHHHHH
Confidence 3344444445444444443
No 219
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.91 E-value=2.3e+02 Score=22.60 Aligned_cols=40 Identities=28% Similarity=0.440 Sum_probs=19.3
Q ss_pred HHHHHHHhhhhhhhchh-cHHHHHhhhhhHHhhHHhhhhHH
Q 027720 131 LAKVKAQVSEVKGVMMD-NIEKVLDRGEKIELLVDRTENLR 170 (219)
Q Consensus 131 l~~i~~~v~~vk~im~~-ni~~~l~Rge~le~L~~ks~~L~ 170 (219)
+..+++-+.+.|..+.+ ||+++=+=.+.+.+|.+.++.++
T Consensus 106 v~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQ 146 (218)
T KOG1655|consen 106 VAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQ 146 (218)
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445544444 55555444444444444444444
No 220
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=20.88 E-value=3.4e+02 Score=19.77 Aligned_cols=12 Identities=17% Similarity=0.257 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHh
Q 027720 181 TQMRRKMWFQNM 192 (219)
Q Consensus 181 ~~l~~~~~~~~~ 192 (219)
+.++|++++=+.
T Consensus 53 ~~L~rR~~li~~ 64 (130)
T PF11026_consen 53 RILRRRARLIRR 64 (130)
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 221
>PF14898 DUF4491: Domain of unknown function (DUF4491)
Probab=20.87 E-value=52 Score=22.83 Aligned_cols=14 Identities=14% Similarity=0.249 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHHHH
Q 027720 192 MKIKLIVLGIIIAL 205 (219)
Q Consensus 192 ~k~~iii~~vv~~~ 205 (219)
.+++.+++++++++
T Consensus 34 ~W~~FL~~Gi~~~~ 47 (94)
T PF14898_consen 34 IWPIFLLAGIACII 47 (94)
T ss_pred cHHHHHHHHHHHHH
Confidence 34455554444443
No 222
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones]
Probab=20.76 E-value=4e+02 Score=21.82 Aligned_cols=29 Identities=31% Similarity=0.233 Sum_probs=12.8
Q ss_pred HHHHhhhhhHHhhHHhhhhHHHHHHHHHH
Q 027720 150 EKVLDRGEKIELLVDRTENLRSQAQDFRQ 178 (219)
Q Consensus 150 ~~~l~Rge~le~L~~ks~~L~~~s~~f~~ 178 (219)
|+++..-...++|.+++.....+++.|..
T Consensus 91 dk~~rs~Ad~eNlr~R~~r~~edak~Fai 119 (236)
T KOG3003|consen 91 DKYLRSLAECENLRDRTIRDVEDAKKFAI 119 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433333444444444444444444443
No 223
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.71 E-value=2.9e+02 Score=23.21 Aligned_cols=45 Identities=16% Similarity=0.351 Sum_probs=26.6
Q ss_pred HHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHH
Q 027720 130 KLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQ 174 (219)
Q Consensus 130 kl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~ 174 (219)
.+.++.+-+..+|+.-.+-=..+=.-.++|+.+.++++++...-.
T Consensus 219 NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~ 263 (273)
T KOG3065|consen 219 NLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVD 263 (273)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHH
Confidence 444455555555554443334444556778888888888876533
No 224
>PF13627 LPAM_2: Prokaryotic lipoprotein-attachment site
Probab=20.67 E-value=1.1e+02 Score=15.56 Aligned_cols=9 Identities=56% Similarity=1.003 Sum_probs=6.0
Q ss_pred HHHHHHhcC
Q 027720 207 LIIVLSVCG 215 (219)
Q Consensus 207 ~~i~~~~c~ 215 (219)
....++.||
T Consensus 8 ~~~~LsgCG 16 (24)
T PF13627_consen 8 LALALSGCG 16 (24)
T ss_pred HHHHHHhcc
Confidence 445568996
No 225
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=20.61 E-value=1.8e+02 Score=23.41 Aligned_cols=72 Identities=19% Similarity=0.272 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHhhhCCCCCcccccc-cchhhhhHHHHHhhhhhcCCch---------hhhHHHHHHHHhhhhhhhch
Q 027720 77 VPIAFLERVKEDFIKRYGGGKAATAVAN-GLNKEFGPKLKEHMQYCIDHPE---------EISKLAKVKAQVSEVKGVMM 146 (219)
Q Consensus 77 ~af~fL~~i~~~f~~~~~~~~~~~~~~~-~~~~~f~~~l~~~~~~~~~~~~---------~~dkl~~i~~~v~~vk~im~ 146 (219)
.+..||++|.+.-..-... ...+ .-+..|...|.++-.++..++. ...+..+.-+++++-+..|.
T Consensus 13 ~t~~~ik~liK~c~~li~A-----~k~~~~a~~~Fa~sL~~f~~~~igd~~tDde~~i~~~l~~Fs~~l~el~~~~~~L~ 87 (207)
T cd07634 13 RTNKFIKELIKDGSLLIGA-----LRNLSMAVQKFSQSLQDFQFECIGDAETDDEISIAQSLKEFARLLIAVEEERRRLI 87 (207)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777776654433211 0000 1124455555555544433331 12344455555555666666
Q ss_pred hcHHHHH
Q 027720 147 DNIEKVL 153 (219)
Q Consensus 147 ~ni~~~l 153 (219)
+|++..+
T Consensus 88 ~~~~~~l 94 (207)
T cd07634 88 QNANDVL 94 (207)
T ss_pred HHHHHHH
Confidence 6554433
No 226
>PF10853 DUF2650: Protein of unknown function (DUF2650); InterPro: IPR022559 This region is found in proteins with unknown function in metazoa.
Probab=20.59 E-value=1.5e+02 Score=16.89 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=10.4
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 027720 186 KMWFQNMKIKLIVLGIII 203 (219)
Q Consensus 186 ~~~~~~~k~~iii~~vv~ 203 (219)
+.+.-+...|+++.++++
T Consensus 18 ~eCCf~lq~Wv~v~l~v~ 35 (38)
T PF10853_consen 18 KECCFRLQIWVIVLLAVL 35 (38)
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 345566676766655443
No 227
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.58 E-value=2.4e+02 Score=22.54 Aligned_cols=22 Identities=23% Similarity=0.290 Sum_probs=16.6
Q ss_pred HHhhhhhhhchhcHHHHHhhhh
Q 027720 136 AQVSEVKGVMMDNIEKVLDRGE 157 (219)
Q Consensus 136 ~~v~~vk~im~~ni~~~l~Rge 157 (219)
+.++-..+.|.++||..|+..|
T Consensus 133 e~Mdm~~Emm~daIDdal~~~e 154 (224)
T KOG3230|consen 133 EIMDMKEEMMDDAIDDALGDDE 154 (224)
T ss_pred HHHHHHHHHHHHHHHHhhcccc
Confidence 4456777889999999996443
No 228
>PF08858 IDEAL: IDEAL domain; InterPro: IPR014957 This entry represents the C-terminal domain of Bacteriophage SPP1, p90. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. his domain may also be referred to as the IDEAL domain, after the sequence of the most conserved region of the domain.; PDB: 3DO9_A.
Probab=20.50 E-value=62 Score=18.19 Aligned_cols=17 Identities=29% Similarity=0.552 Sum_probs=11.2
Q ss_pred hhhchhcHHHHHhhhhh
Q 027720 142 KGVMMDNIEKVLDRGEK 158 (219)
Q Consensus 142 k~im~~ni~~~l~Rge~ 158 (219)
++.+.+.||..|++|++
T Consensus 11 ~~~L~~~ID~ALd~~D~ 27 (37)
T PF08858_consen 11 KEQLLELIDEALDNRDK 27 (37)
T ss_dssp HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHcCCH
Confidence 34456678888888865
No 229
>PF15102 TMEM154: TMEM154 protein family
Probab=20.35 E-value=24 Score=26.59 Aligned_cols=8 Identities=25% Similarity=0.289 Sum_probs=3.6
Q ss_pred HHHhcCCC
Q 027720 210 VLSVCGGF 217 (219)
Q Consensus 210 ~~~~c~gf 217 (219)
++.+|.-+
T Consensus 73 l~vV~lv~ 80 (146)
T PF15102_consen 73 LSVVCLVI 80 (146)
T ss_pred HHHHHhee
Confidence 33455443
No 230
>COG3716 ManZ Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]
Probab=20.29 E-value=2.2e+02 Score=23.83 Aligned_cols=44 Identities=20% Similarity=0.410 Sum_probs=27.9
Q ss_pred cChhhHHHHHHHHHHHHHhhhCCCCCcccccccchhhhhHHHHHhhhhhcCCch
Q 027720 73 VGRQVPIAFLERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPE 126 (219)
Q Consensus 73 ~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~ 126 (219)
|.+-.+..|+-.+--..++.|+.+ .++..+.+++.++.||.+|-
T Consensus 28 yERmq~~G~~ysmlPalKKlY~~~----------k~~~~~AlkrHleFFNT~P~ 71 (269)
T COG3716 28 YERMQALGYLYAMLPALKKLYPDD----------KEDLKEALKRHLEFFNTHPH 71 (269)
T ss_pred HHHHhhhhHHHHHHHHHHHHcCCC----------cHHHHHHHHHHHHHhcCCch
Confidence 445555566666655555556421 14567788888888887774
No 231
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=20.04 E-value=2.8e+02 Score=18.49 Aligned_cols=12 Identities=17% Similarity=0.423 Sum_probs=5.0
Q ss_pred HHHHHHHhhhhh
Q 027720 131 LAKVKAQVSEVK 142 (219)
Q Consensus 131 l~~i~~~v~~vk 142 (219)
+..++++++++.
T Consensus 35 i~~l~~~~~~i~ 46 (90)
T PF06103_consen 35 IDTLQEQVDPIT 46 (90)
T ss_pred HHHHHHhHHHHH
Confidence 344444444433
No 232
>PF02937 COX6C: Cytochrome c oxidase subunit VIc; InterPro: IPR004204 Cytochrome c oxidase, a 13 subunit complex, 1.9.3.1 from EC is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit VIc.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG4_I 2DYS_V 3ASO_I 2EIK_V 2EIM_I 1OCC_V 1V54_V 1OCO_V 3ASN_V 2EIL_I ....
Probab=20.03 E-value=2.3e+02 Score=18.63 Aligned_cols=24 Identities=8% Similarity=0.091 Sum_probs=14.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Q 027720 187 MWFQNMKIKLIVLGIIIALILIIV 210 (219)
Q Consensus 187 ~~~~~~k~~iii~~vv~~~~~~i~ 210 (219)
+.+++.|.-+++++++++++...|
T Consensus 12 ll~~~l~~~i~~a~~ls~~~~~~~ 35 (73)
T PF02937_consen 12 LLAKRLKRHIVVAFVLSLGVAAAY 35 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666665554443
No 233
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=20.01 E-value=2.3e+02 Score=17.34 Aligned_cols=8 Identities=0% Similarity=0.260 Sum_probs=3.9
Q ss_pred HHHHHHhH
Q 027720 186 KMWFQNMK 193 (219)
Q Consensus 186 ~~~~~~~k 193 (219)
+.+|+.++
T Consensus 38 ~~~l~~~~ 45 (64)
T smart00831 38 LRFLRQFH 45 (64)
T ss_pred HHHHHHHH
Confidence 34445554
Done!