Query 027720
Match_columns 219
No_of_seqs 139 out of 1010
Neff 8.7
Searched_HMMs 29240
Date Tue Mar 26 00:17:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027720.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027720hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b93_A Vesicle-associated memb 100.0 1.9E-59 6.3E-64 369.4 8.8 189 3-193 1-189 (189)
2 2nut_C Vesicle-trafficking pro 100.0 9.3E-51 3.2E-55 322.1 15.8 184 5-191 2-196 (196)
3 3kyq_A YKT6, synaptobrevin hom 100.0 1.7E-38 5.8E-43 251.0 11.4 177 4-185 2-194 (199)
4 4afi_A AP-3 complex subunit de 100.0 3E-34 1E-38 221.5 15.5 121 2-123 52-172 (173)
5 3hd7_A Vesicle-associated memb 100.0 5.1E-32 1.7E-36 187.6 11.3 88 128-215 4-91 (91)
6 2vx8_A Nucleoporin-like protei 100.0 9.1E-30 3.1E-34 195.9 13.9 121 3-124 43-163 (169)
7 2kog_A Vesicle-associated memb 100.0 4.7E-31 1.6E-35 190.9 0.6 89 127-215 31-119 (119)
8 2nps_A VAMP-4, vesicle-associa 99.9 7.9E-26 2.7E-30 150.7 4.4 72 124-195 3-74 (74)
9 3bw6_A Synaptobrevin homolog Y 99.9 6.6E-24 2.2E-28 159.7 13.3 124 3-130 4-144 (144)
10 1sfc_A VAMP 2, protein (synapt 99.9 1.8E-24 6.2E-29 150.7 7.7 68 128-195 29-96 (96)
11 1l4a_A Synaptobrevin; snare, s 99.9 3E-25 1E-29 150.0 1.7 71 124-194 10-80 (80)
12 3b5n_A Synaptobrevin homolog 1 99.9 1.1E-21 3.9E-26 125.7 7.0 60 129-188 2-61 (61)
13 1n7s_A Vesicle-associated memb 99.9 1.1E-21 3.9E-26 126.6 7.1 61 128-188 3-63 (63)
14 1gl2_A Endobrevin; membrane pr 99.8 4.6E-20 1.6E-24 119.6 5.2 62 124-185 4-65 (65)
15 1urq_A M-tomosyn isoform; tran 99.7 2.5E-17 8.6E-22 105.2 5.6 59 129-187 4-62 (63)
16 3fie_C Fragment of vesicle-ass 98.4 1.5E-09 5.1E-14 61.9 -4.9 30 128-157 8-37 (38)
17 3zym_A Phosphatidylinositol-bi 98.2 4.7E-07 1.6E-11 75.7 1.5 32 128-159 279-310 (310)
18 3hd7_B Syntaxin-1A; membrane p 97.5 0.0034 1.2E-07 44.1 12.4 44 129-172 21-64 (109)
19 2fh5_A Signal recognition part 97.4 0.00073 2.5E-08 51.9 8.1 86 7-94 13-104 (185)
20 3hd7_A Vesicle-associated memb 95.0 0.33 1.1E-05 32.6 9.7 50 130-179 13-62 (91)
21 2fz0_A R-snare NYV1P, V-snare 88.3 1.5 5E-05 31.5 6.2 60 28-87 46-114 (149)
22 2vgl_S AP-2 complex subunit si 87.3 6.4 0.00022 28.2 10.6 47 47-93 49-95 (142)
23 2kog_A Vesicle-associated memb 85.6 0.3 1E-05 34.6 1.5 52 129-180 40-91 (119)
24 1jth_B Syntaxin 1A; coiled-coi 83.5 4.6 0.00016 25.9 6.4 44 129-172 10-53 (77)
25 1w63_Q Adapter-related protein 83.3 11 0.00038 27.5 12.3 48 47-94 49-96 (158)
26 1w63_M Adaptor-related protein 82.8 10 0.00034 32.5 10.2 90 4-93 1-95 (423)
27 2vgl_M AP-2 complex subunit MU 81.5 25 0.00084 30.1 13.1 49 46-94 46-94 (435)
28 1n7s_A Vesicle-associated memb 80.8 7.5 0.00026 23.8 6.8 54 136-189 4-57 (63)
29 3tjz_C Coatomer subunit zeta-1 80.0 15 0.00051 26.8 12.6 88 5-93 12-105 (153)
30 2j3t_C Trafficking protein par 79.7 10 0.00035 27.4 7.9 86 33-121 46-137 (145)
31 1rh5_B Preprotein translocase 79.0 1.6 5.6E-05 28.0 2.9 52 158-209 4-55 (74)
32 1sfc_A VAMP 2, protein (synapt 78.4 13 0.00043 25.0 7.7 52 136-187 30-81 (96)
33 2ww9_B Protein transport prote 78.1 2.4 8E-05 27.7 3.5 48 162-209 21-68 (80)
34 3b5n_A Synaptobrevin homolog 1 78.0 9.3 0.00032 23.2 6.8 52 137-188 3-54 (61)
35 1t3j_A Mitofusin 1; coiled coi 74.9 8.1 0.00028 26.0 5.6 48 129-176 36-83 (96)
36 2nps_B Syntaxin 13, vesicle-as 72.6 15 0.00051 23.0 6.6 44 129-172 6-49 (71)
37 3b5n_B Protein SSO1; snare com 69.5 17 0.0006 22.5 7.0 46 129-174 10-55 (69)
38 2j3t_D Trafficking protein par 67.5 42 0.0014 26.1 10.2 87 33-122 119-210 (219)
39 2wwb_B SEC61gamma, protein tra 67.2 1.2 4.2E-05 28.1 0.2 50 159-208 4-53 (68)
40 1utg_A Uteroglobin; steroid bi 66.5 8.5 0.00029 24.2 4.1 42 114-155 21-62 (70)
41 3cue_C Transport protein parti 66.1 31 0.0011 25.2 7.8 57 33-91 52-113 (159)
42 1ccd_A Clara cell 17 KD protei 64.5 9.5 0.00033 24.5 4.1 42 114-155 23-64 (77)
43 2nps_A VAMP-4, vesicle-associa 59.9 28 0.00096 21.9 5.7 23 157-179 43-65 (74)
44 4a4y_A Protein MXIG; protein b 57.8 19 0.00066 24.4 4.7 44 4-59 84-127 (146)
45 3mp7_B Preprotein translocase 56.7 5.6 0.00019 24.4 1.8 49 161-209 3-51 (61)
46 1utr_A Uteroglobin; clara cell 53.0 15 0.00052 24.5 3.7 41 115-155 43-83 (96)
47 3j1r_A Archaeal adhesion filam 51.3 18 0.00062 17.9 2.7 16 196-211 10-25 (26)
48 2knc_A Integrin alpha-IIB; tra 51.2 9.8 0.00033 22.7 2.2 15 201-215 23-37 (54)
49 3cue_A Transport protein parti 49.6 89 0.003 24.2 9.3 76 45-121 119-218 (219)
50 1urq_A M-tomosyn isoform; tran 49.4 43 0.0015 20.5 6.1 48 131-178 13-60 (63)
51 2j3w_A Sedlin, trafficking pro 49.2 68 0.0023 22.7 9.3 74 45-121 64-139 (142)
52 2l8s_A Integrin alpha-1; trans 49.2 11 0.00038 22.5 2.2 15 201-215 20-34 (54)
53 1n7s_B Syntaxin 1A; neuronal s 48.2 45 0.0015 20.4 6.5 45 129-173 12-56 (68)
54 1gl2_B Syntaxin 7; membrane pr 48.1 44 0.0015 20.3 6.5 45 129-173 9-53 (65)
55 2ww9_B Protein transport prote 47.7 20 0.00068 23.2 3.4 52 154-205 6-60 (80)
56 2zxe_G FXYD10, phospholemman-l 47.2 30 0.001 21.9 4.0 12 189-200 16-27 (74)
57 3b5n_C Protein transport prote 47.0 50 0.0017 20.6 7.3 57 129-185 12-68 (70)
58 1txp_A HnRNP C, heterogeneous 46.9 9.6 0.00033 19.3 1.4 24 133-160 3-26 (28)
59 1gl2_A Endobrevin; membrane pr 46.6 48 0.0016 20.2 5.7 51 136-186 9-59 (65)
60 3fym_A Putative uncharacterize 45.2 4.5 0.00015 28.6 0.0 24 188-211 101-124 (130)
61 3h3g_B Parathyroid hormone-rel 45.1 13 0.00044 18.2 1.7 13 180-192 4-16 (24)
62 1f5n_A Interferon-induced guan 43.6 77 0.0026 28.4 7.8 24 169-192 517-540 (592)
63 2k1a_A Integrin alpha-IIB; sin 43.5 37 0.0013 19.0 3.7 18 201-218 21-38 (42)
64 1nhl_A Synaptosomal-associated 41.2 53 0.0018 19.2 5.8 41 133-173 4-44 (54)
65 1l4a_C S-SNAP25 fusion protein 41.0 28 0.00094 22.7 3.3 47 128-174 26-72 (83)
66 1zkr_A Major allergen I polype 38.5 40 0.0014 24.6 4.2 43 114-156 22-65 (153)
67 2pjw_V Vacuolar protein sortin 38.1 83 0.0028 20.7 5.4 41 128-168 32-72 (91)
68 1sfc_B Protein (syntaxin 1A), 38.0 78 0.0027 20.2 7.0 44 129-172 21-64 (83)
69 2klu_A T-cell surface glycopro 37.8 6.6 0.00023 24.4 -0.1 22 193-214 9-30 (70)
70 1pi7_A VPU protein, U ORF prot 37.3 34 0.0012 18.5 2.8 15 196-210 7-21 (36)
71 2ygg_A Sodium/hydrogen exchang 35.6 20 0.00067 22.5 1.8 23 135-157 6-28 (70)
72 3lcn_C MRNA transport factor G 34.5 24 0.00083 17.8 1.7 21 128-148 5-25 (29)
73 1spf_A Pulmonary surfactant-as 34.4 53 0.0018 17.2 3.5 19 192-210 10-28 (35)
74 1l4a_A Synaptobrevin; snare, s 34.3 14 0.00047 23.8 1.0 50 130-179 23-72 (80)
75 2oxj_A Hybrid alpha/beta pepti 31.9 61 0.0021 17.1 3.7 20 159-178 3-22 (34)
76 1n7s_C SNAP-25A; neuronal snar 29.7 1.1E+02 0.0037 19.4 7.1 46 128-173 22-67 (79)
77 3f4m_A Tumor necrosis factor, 29.6 75 0.0026 23.3 4.5 76 70-157 85-160 (161)
78 3vmt_A Monofunctional glycosyl 28.9 27 0.00092 28.0 2.1 27 181-207 25-51 (263)
79 1kd8_B GABH BLL, GCN4 acid bas 28.6 73 0.0025 17.0 3.7 11 160-170 4-14 (36)
80 3c3f_A Alpha/beta peptide with 26.4 78 0.0027 16.7 3.7 12 160-171 4-15 (34)
81 2jp3_A FXYD domain-containing 25.7 84 0.0029 19.4 3.5 10 189-198 14-23 (67)
82 2kfe_A Meucin-24; alpha-helix, 24.1 47 0.0016 16.5 1.7 19 130-148 6-24 (26)
83 1dn1_B Syntaxin 1A, syntaxin b 24.1 43 0.0015 26.6 2.5 41 129-169 200-240 (267)
84 3rkg_A Magnesium transporter M 22.9 2.8E+02 0.0097 21.9 7.9 37 79-121 103-139 (261)
85 3ghg_A Fibrinogen alpha chain; 21.5 4.2E+02 0.014 23.4 8.3 17 53-69 31-47 (562)
86 1bm4_A Protein (moloney murine 20.4 1.1E+02 0.0036 16.0 2.7 18 74-91 11-28 (32)
No 1
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=100.00 E-value=1.9e-59 Score=369.44 Aligned_cols=189 Identities=35% Similarity=0.616 Sum_probs=150.0
Q ss_pred CcceEEEEEEeCCeeEEeecCCCCCHHHHHHHHHhcCCCCCCeeEEEECCeEEEEEEeCCEEEEEEecCCcChhhHHHHH
Q 027720 3 QQSLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSNNKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFL 82 (219)
Q Consensus 3 ~~~i~Ya~Iar~~~iLae~~~~~~~~~~~a~~il~~i~~~~~k~~~~~~~~~~~~l~~~~~~~~~v~d~~~~~~~af~fL 82 (219)
.|||+|||||||++|||||+..+|||..+|+.+|+++|+.++|.+++.|+|.|||+.++|++|+|+||++||+++||.||
T Consensus 1 ~M~ilYa~VArg~~iLae~t~~~gnf~~ia~~iL~kip~~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL 80 (189)
T 4b93_A 1 SMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 80 (189)
T ss_dssp CCSEEEEEEEETTEEEEEEESSEECHHHHHHHHHTTCCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred CCceEEEEEEeCCEEEEeCCCCCCCHHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCCcccccccchhhhhHHHHHhhhhhcCCchhhhHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhh
Q 027720 83 ERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELL 162 (219)
Q Consensus 83 ~~i~~~f~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L 162 (219)
++|+++|.+.|+ ..+.++.|++++.+|.+.|++.|++|+ +|.+.|++.+++++|+||++||.+||+++|+|||+||.|
T Consensus 81 ~~i~~eF~~~~~-~~~~~~~~~~~~~~f~~~l~~~~~~y~-d~~~~d~l~~~~~~l~ev~~im~~Ni~~vl~Rge~l~~L 158 (189)
T 4b93_A 81 NEVKKRFQTTYG-SRAQTALPYAMNSEFSSVLAAQLKHHS-ENKSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELL 158 (189)
T ss_dssp HHHHHHHHHHHG-GGGGTCCTTTTHHHHHHHHHHHHHHHH-CC-------CCHHHHHTTTTCCEECCCCBCTTSSBCCCC
T ss_pred HHHHHHHHhhcc-ccccccCCccccchhhHHHHHHHHhhh-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 999999999995 455677788998999999999999995 566679999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHhHHHHHHHHHHHHhH
Q 027720 163 VDRTENLRSQAQDFRQQGTQMRRKMWFQNMK 193 (219)
Q Consensus 163 ~~ks~~L~~~s~~f~~~s~~l~~~~~~~~~k 193 (219)
++||++|+.+|+.|+++|++|+|+|||+|+|
T Consensus 159 ~~ks~~L~~~s~~f~~~a~~l~r~mwwkn~K 189 (189)
T 4b93_A 159 IDKTENLVDSSVTFKTTSRNLARAMCMKNIK 189 (189)
T ss_dssp EETTCC-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999987
No 2
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=100.00 E-value=9.3e-51 Score=322.13 Aligned_cols=184 Identities=23% Similarity=0.429 Sum_probs=116.3
Q ss_pred ceEEEEEEeC--CeeEEeecCCC---CC----HHHHHHHHHhcCCC-CCCeeEEEECCeEEEEEEeCCEEEEEEecCCcC
Q 027720 5 SLIYSFVARG--TVILAEYTEFT---GN----FTGIAAQCLQKLPS-SNNKFTYNCDGHTFNYLVDDGFTYCVVAVESVG 74 (219)
Q Consensus 5 ~i~Ya~Iar~--~~iLae~~~~~---~~----~~~~a~~il~~i~~-~~~k~~~~~~~~~~~~l~~~~~~~~~v~d~~~~ 74 (219)
||+|+||||+ ++|||+|++.+ |+ |..+++.+++++|+ .++|.+++.++|.|||+.++|++|+|+||++||
T Consensus 2 Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~s~~~~~y~fhy~~~~gl~~l~i~d~~yp 81 (196)
T 2nut_C 2 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFP 81 (196)
T ss_dssp CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTSC
T ss_pred ceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeEEEEeCCEEEEEEeCCCeEEEEEEcCCcc
Confidence 6999999999 89999998743 44 88999999999997 578999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhhhCCCCCcc-cccccchhhhhHHHHHhhhhhcCCchhhhHHHHHHHHhhhhhhhchhcHHHHH
Q 027720 75 RQVPIAFLERVKEDFIKRYGGGKAAT-AVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVL 153 (219)
Q Consensus 75 ~~~af~fL~~i~~~f~~~~~~~~~~~-~~~~~~~~~f~~~l~~~~~~~~~~~~~~dkl~~i~~~v~~vk~im~~ni~~~l 153 (219)
+++||.||++|+++|...|+. .+.. +.||++ .+|++.|+++|++| ++|.+.|++.+++++|+||++||.+||+++|
T Consensus 82 ~r~af~fL~~i~~~F~~~~~~-~~~~~~~~~~~-~~f~~~l~~~~~~y-~~~~~~d~l~~~~~~l~ev~~im~~ni~~vl 158 (196)
T 2nut_C 82 KKLAFAYLEDLHSEFDEQHGK-KVPTVSRPYSF-IEFDTFIQKTKKLY-IDSRARRNLGSINTELQDVQRIMVANIEEVL 158 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-TTTTCCSTTTT-GGGHHHHHHHHTTT-SCCC-----------------CCEEEHHHHC
T ss_pred hHHHHHHHHHHHHHHHHhccc-hhccccCCCch-HHHHHHHHHHHHHh-cCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999964 4443 578999 59999999999999 5787779999999999999999999999999
Q ss_pred hhhhhHHhhHHhhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 027720 154 DRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQN 191 (219)
Q Consensus 154 ~Rge~le~L~~ks~~L~~~s~~f~~~s~~l~~~~~~~~ 191 (219)
+|||+||.|++||++|+.+|..|+++|++++|+|||++
T Consensus 159 ~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~~~~~~~k 196 (196)
T 2nut_C 159 QRGEALSALDSKANNLSSLSKKYRQDAKYLNMRSTYAK 196 (196)
T ss_dssp --------------------------------------
T ss_pred HccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999985
No 3
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=100.00 E-value=1.7e-38 Score=250.96 Aligned_cols=177 Identities=20% Similarity=0.317 Sum_probs=148.4
Q ss_pred cceEEEEEEeC--C--eeEEeecCCC----------CCHHH-HHHHHHhcCCCCCCeeEEEECCeEEE-EEEeCCEEEEE
Q 027720 4 QSLIYSFVARG--T--VILAEYTEFT----------GNFTG-IAAQCLQKLPSSNNKFTYNCDGHTFN-YLVDDGFTYCV 67 (219)
Q Consensus 4 ~~i~Ya~Iar~--~--~iLae~~~~~----------~~~~~-~a~~il~~i~~~~~k~~~~~~~~~~~-~l~~~~~~~~~ 67 (219)
|.|++..|.+. + .+|+...+.+ ++|.. +++.+++++||+ +|.+++.++|.|| |+.++|++|+|
T Consensus 2 mk~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~~-~r~s~~~~~y~fH~y~~~~gl~yl~ 80 (199)
T 3kyq_A 2 MKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKG-SRASVKEQEYLCHVYVRSDSLAGVV 80 (199)
T ss_dssp CCEEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCTT-EEEEEECSSEEEEEEECTTSEEEEE
T ss_pred ceEEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCCC-CeEEEEeCCEEEEEEEecCCEEEEE
Confidence 45778888873 2 4566443322 34544 557999999885 7999999999999 89999999999
Q ss_pred EecCCcChhhHHHHHHHHHHHHHhhhCCCCCcccccccchhhhhHHHHHhhhhhcCCchhhhHHHHHHHHhhhhhhhchh
Q 027720 68 VAVESVGRQVPIAFLERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMD 147 (219)
Q Consensus 68 v~d~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~dkl~~i~~~v~~vk~im~~ 147 (219)
+||++||+++||.||++|+++|.+.|+...|....+.+ ..| +.|++.|++| +||.+.|++.+++++|+||++||.+
T Consensus 81 itd~~yp~r~AF~fL~ei~~eF~~~~~~~~~~~~~~~~--~~f-~~l~~~m~~Y-~dp~~~d~l~~~q~el~evk~iM~~ 156 (199)
T 3kyq_A 81 IADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPAT--IHY-TALDGHLSRY-QNPREADPMSKVQAELDETKIILHN 156 (199)
T ss_dssp EEETTSCHHHHHHHHHHHHHHHHHHSCGGGSTTCCTTT--CCC-CTHHHHHHHT-TSGGGCCCCHHHHHHHHTCCCEEES
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHhccchhhhcccccc--ccc-HHHHHHHHHh-CCchhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999755554322222 235 6788889889 6788889999999999999999999
Q ss_pred cHHHHHhhhhhHHhhHHhhhhHHHHHHHHHHhHHHHHH
Q 027720 148 NIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRR 185 (219)
Q Consensus 148 ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~~s~~l~~ 185 (219)
||+++|+|||+||+|++||++|+.+|+.|+++|+++++
T Consensus 157 NI~~vl~RgekLd~L~~ks~~L~~~s~~F~k~a~~lns 194 (199)
T 3kyq_A 157 TMESLLERGEKLDDLVSKSEVLGTQSKAFYKTARKQNS 194 (199)
T ss_dssp SGGGTSCTTCCHHHHHHHCSSSCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999986
No 4
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=100.00 E-value=3e-34 Score=221.46 Aligned_cols=121 Identities=33% Similarity=0.572 Sum_probs=115.3
Q ss_pred CCcceEEEEEEeCCeeEEeecCCCCCHHHHHHHHHhcCCCCCCeeEEEECCeEEEEEEeCCEEEEEEecCCcChhhHHHH
Q 027720 2 GQQSLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSNNKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAF 81 (219)
Q Consensus 2 ~~~~i~Ya~Iar~~~iLae~~~~~~~~~~~a~~il~~i~~~~~k~~~~~~~~~~~~l~~~~~~~~~v~d~~~~~~~af~f 81 (219)
.+|+|+|||||||++|||||+..+|||+.+++.+|+++|+.++|.+++.++|.|||++++|++|+|+||+++|+++||.|
T Consensus 52 ~~M~I~Ya~VArg~tiLAE~t~~~gnf~~va~~iL~kip~~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~F 131 (173)
T 4afi_A 52 EAMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSF 131 (173)
T ss_dssp CCCCEEEEEEEETTEEEEEEESSCCCHHHHHHHHHTTSCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHH
T ss_pred ccccEEEEEEECCCEEEEEccCCCCCHHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHH
Confidence 36789999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCcccccccchhhhhHHHHHhhhhhcC
Q 027720 82 LERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQYCID 123 (219)
Q Consensus 82 L~~i~~~f~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~ 123 (219)
|++|+++|.+.|+ ..+.++.||+|+.+|++.|+++|++||+
T Consensus 132 LedI~~eF~~~yg-~~~~ta~pya~~~eF~~~L~~~M~~yn~ 172 (173)
T 4afi_A 132 LNEVKKRFQTTYG-SRAQTALPYAMNSEFSSVLAAQLKHHSE 172 (173)
T ss_dssp HHHHHHHHHHHHG-GGGGTCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-hhhhhccCcchhHHHHHHHHHHHHHhcC
Confidence 9999999999995 5678899999999999999999999964
No 5
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=99.97 E-value=5.1e-32 Score=187.59 Aligned_cols=88 Identities=32% Similarity=0.602 Sum_probs=85.8
Q ss_pred hhHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 027720 128 ISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVLGIIIALIL 207 (219)
Q Consensus 128 ~dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~~s~~l~~~~~~~~~k~~iii~~vv~~~~~ 207 (219)
.|++.+++++++||+++|.+||+++|+|||+||.|++||++|+.+|..|+++|++++|+|||+|+|++++++++++++++
T Consensus 4 ~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il~ 83 (91)
T 3hd7_A 4 MRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILI 83 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcC
Q 027720 208 IIVLSVCG 215 (219)
Q Consensus 208 ~i~~~~c~ 215 (219)
+|++++|.
T Consensus 84 ii~~~~~~ 91 (91)
T 3hd7_A 84 IIIVYFST 91 (91)
T ss_dssp HHHHTTCC
T ss_pred HHHHHHhC
Confidence 99999993
No 6
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=99.97 E-value=9.1e-30 Score=195.86 Aligned_cols=121 Identities=33% Similarity=0.575 Sum_probs=107.9
Q ss_pred CcceEEEEEEeCCeeEEeecCCCCCHHHHHHHHHhcCCCCCCeeEEEECCeEEEEEEeCCEEEEEEecCCcChhhHHHHH
Q 027720 3 QQSLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSNNKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFL 82 (219)
Q Consensus 3 ~~~i~Ya~Iar~~~iLae~~~~~~~~~~~a~~il~~i~~~~~k~~~~~~~~~~~~l~~~~~~~~~v~d~~~~~~~af~fL 82 (219)
+|+|+|+||+||++||+||++.++||..+++.+++++++.++|.+++.++|.|||+.+||++|+||||++||+++||.||
T Consensus 43 ~M~ilYa~VaRG~~VLae~t~~~gnf~~iak~ll~kl~~~~~r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fL 122 (169)
T 2vx8_A 43 GMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 122 (169)
T ss_dssp SSCCCEEEEEETTEEEEEEESSCBSHHHHHHHHHTTSCSSCEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred CCceEEEEEEcCCEEEEEeccCCCCHHHHHHHHHhhCCCCCCceEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHH
Confidence 47899999999999999999999999999999999999977899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCCcccccccchhhhhHHHHHhhhhhcCC
Q 027720 83 ERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDH 124 (219)
Q Consensus 83 ~~i~~~f~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~ 124 (219)
++|+++|.+.|+ ..+..+.+|+|+.+|++.|++.|++|+++
T Consensus 123 edI~~eF~~~y~-~~~~~a~pysf~~eF~~~Lk~~~~~~~~~ 163 (169)
T 2vx8_A 123 NEVKKRFQTTYG-SRAQTALPYAMNSEFSSVLAAQLKHHSEN 163 (169)
T ss_dssp HHHHHHHHHHHT-TGGGTCCTTTTHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHhh-hhhhccCCcchhHHHHHHHHHHHHHhcCc
Confidence 999999999996 45666778999889999999999999653
No 7
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=99.96 E-value=4.7e-31 Score=190.94 Aligned_cols=89 Identities=31% Similarity=0.576 Sum_probs=86.3
Q ss_pred hhhHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 027720 127 EISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVLGIIIALI 206 (219)
Q Consensus 127 ~~dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~~s~~l~~~~~~~~~k~~iii~~vv~~~~ 206 (219)
+.|++.+++++++||+++|.+||+++|+|||+||.|++||++|+.+|..|+++|++++|+|||+|+|+++++++++++++
T Consensus 31 ~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~iii~~iv~iii 110 (119)
T 2kog_A 31 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIIL 110 (119)
T ss_dssp SCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcC
Q 027720 207 LIIVLSVCG 215 (219)
Q Consensus 207 ~~i~~~~c~ 215 (219)
++|++++|.
T Consensus 111 ~iIi~~~c~ 119 (119)
T 2kog_A 111 IIIIVYFST 119 (119)
T ss_dssp HHHHHHHHC
T ss_pred HHhhhheeC
Confidence 999999994
No 8
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=99.92 E-value=7.9e-26 Score=150.73 Aligned_cols=72 Identities=40% Similarity=0.690 Sum_probs=62.2
Q ss_pred CchhhhHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHH
Q 027720 124 HPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIK 195 (219)
Q Consensus 124 ~~~~~dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~~s~~l~~~~~~~~~k~~ 195 (219)
+|.+.|++.+++.+|+||++||.+||+++|+|||+||.|+++|++|+.+|..|+++|++++|+|||+|+|++
T Consensus 3 ~~~~~d~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~~ww~n~K~~ 74 (74)
T 2nps_A 3 MGPRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKIK 74 (74)
T ss_dssp ---CCSSSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 466679999999999999999999999999999999999999999999999999999999999999999974
No 9
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=99.91 E-value=6.6e-24 Score=159.66 Aligned_cols=124 Identities=12% Similarity=0.177 Sum_probs=99.2
Q ss_pred CcceEEEEEEeC----CeeEEeecCCC----------CCH-HHHHHHHHhcCCCCCCeeEEEECCeEEEEE-EeCCEEEE
Q 027720 3 QQSLIYSFVARG----TVILAEYTEFT----------GNF-TGIAAQCLQKLPSSNNKFTYNCDGHTFNYL-VDDGFTYC 66 (219)
Q Consensus 3 ~~~i~Ya~Iar~----~~iLae~~~~~----------~~~-~~~a~~il~~i~~~~~k~~~~~~~~~~~~l-~~~~~~~~ 66 (219)
.|.|+|.+|+|+ .++|+++++.+ ++| ..+++.+++++|++ +|.+++.++|+|||+ .++|++|+
T Consensus 4 ~Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~-~R~sv~~~~y~fH~~~~~~gl~~l 82 (144)
T 3bw6_A 4 AMRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAG-QRQSIEEGNYIGHVYARSEGICGV 82 (144)
T ss_dssp CCCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTT-EEEEEEETTEEEEEEECTTSEEEE
T ss_pred EEEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCC-ceEEEEeCCEEEEEEEecCCEEEE
Confidence 356888889998 67899998766 555 77899999999986 799999999999999 78999999
Q ss_pred EEecCCcChhhHHHHHHHHHHHHHhhhCCCCCcc-cccccchhhhhHHHHHhhhhhcCCchhhhH
Q 027720 67 VVAVESVGRQVPIAFLERVKEDFIKRYGGGKAAT-AVANGLNKEFGPKLKEHMQYCIDHPEEISK 130 (219)
Q Consensus 67 ~v~d~~~~~~~af~fL~~i~~~f~~~~~~~~~~~-~~~~~~~~~f~~~l~~~~~~~~~~~~~~dk 130 (219)
|+||++||+++||.||++|+++|.++|+...|.+ ..+++ +..| +.|++.|++| +||.+.|+
T Consensus 83 ~i~D~~yp~rvAF~~L~~i~~eF~~~y~~~~~~~~~~~~~-~~~f-~~l~~~i~kY-qdp~~aD~ 144 (144)
T 3bw6_A 83 LITDKEYPVRPAYTLLNKILDEYLVAHPKEEWADVTETND-ALKM-KQLDTYISKY-QDPSQADA 144 (144)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHSCGGGTTTCSSCCG-GGCC-THHHHHHHHT-SCC-----
T ss_pred EEECCCCChhHHHHHHHHHHHHHHHHccchhhhhcccccC-Ccch-HHHHHHHHHh-CchhhcCC
Confidence 9999999999999999999999999996543655 33111 2344 7888888889 78877664
No 10
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.91 E-value=1.8e-24 Score=150.73 Aligned_cols=68 Identities=35% Similarity=0.651 Sum_probs=64.3
Q ss_pred hhHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHH
Q 027720 128 ISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIK 195 (219)
Q Consensus 128 ~dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~~s~~l~~~~~~~~~k~~ 195 (219)
.|++.+++.+|++|++||.+||+++|+|||+||.|++||++|+.+|..|+++|++++|+|||+|+|++
T Consensus 29 ~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkmwwkn~K~~ 96 (96)
T 1sfc_A 29 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMM 96 (96)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 49999999999999999999999999999999999999999999999999999999999999999975
No 11
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.90 E-value=3e-25 Score=150.03 Aligned_cols=71 Identities=35% Similarity=0.618 Sum_probs=62.5
Q ss_pred CchhhhHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 027720 124 HPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKI 194 (219)
Q Consensus 124 ~~~~~dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~~s~~l~~~~~~~~~k~ 194 (219)
+|.+.|++.+++.+|++|++||.+||+++|+|||+||.|++||++|+.+|..|+++|++++|+|||+|+|+
T Consensus 10 ~~~~~d~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk~wwkn~K~ 80 (80)
T 1l4a_A 10 PVQQSKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKFWWKNCKM 80 (80)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHHCC------
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34556999999999999999999999999999999999999999999999999999999999999999985
No 12
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.85 E-value=1.1e-21 Score=125.69 Aligned_cols=60 Identities=37% Similarity=0.746 Sum_probs=59.3
Q ss_pred hHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHHhHHHHHHHHH
Q 027720 129 SKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMW 188 (219)
Q Consensus 129 dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~~s~~l~~~~~ 188 (219)
|++.+++.+|++|++||.+||+++|+|||+||.|++||++|+.+|..|+++|++++|+||
T Consensus 2 d~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW 61 (61)
T 3b5n_A 2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAMW 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 789999999999999999999999999999999999999999999999999999999999
No 13
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=99.85 E-value=1.1e-21 Score=126.62 Aligned_cols=61 Identities=36% Similarity=0.638 Sum_probs=59.9
Q ss_pred hhHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHHhHHHHHHHHH
Q 027720 128 ISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMW 188 (219)
Q Consensus 128 ~dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~~s~~l~~~~~ 188 (219)
.|++.+++.++++|+++|.+||+++|+|||+||.|++||++|+.+|..|+++|++++|+||
T Consensus 3 ~d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW 63 (63)
T 1n7s_A 3 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3899999999999999999999999999999999999999999999999999999999998
No 14
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.80 E-value=4.6e-20 Score=119.60 Aligned_cols=62 Identities=26% Similarity=0.564 Sum_probs=52.8
Q ss_pred CchhhhHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHHhHHHHHH
Q 027720 124 HPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRR 185 (219)
Q Consensus 124 ~~~~~dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~~s~~l~~ 185 (219)
+|.+.|++.+++.+|++|++||.+||+++|+|||+||.|++||++|+.+|..|+++|++|+|
T Consensus 4 ~~~~~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A~~l~r 65 (65)
T 1gl2_A 4 MSAGNDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVAR 65 (65)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45566999999999999999999999999999999999999999999999999999999986
No 15
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.69 E-value=2.5e-17 Score=105.23 Aligned_cols=59 Identities=27% Similarity=0.347 Sum_probs=55.6
Q ss_pred hHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHHhHHHHHHHH
Q 027720 129 SKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKM 187 (219)
Q Consensus 129 dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~~s~~l~~~~ 187 (219)
.++..++.++++|+++|.+|++++++|||+|+.|++||++|..+|..|.+.|++|++++
T Consensus 4 ~~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~Ky 62 (63)
T 1urq_A 4 GGIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLKY 62 (63)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999999999999999999999999999875
No 16
>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum}
Probab=98.45 E-value=1.5e-09 Score=61.93 Aligned_cols=30 Identities=40% Similarity=0.539 Sum_probs=28.5
Q ss_pred hhHHHHHHHHhhhhhhhchhcHHHHHhhhh
Q 027720 128 ISKLAKVKAQVSEVKGVMMDNIEKVLDRGE 157 (219)
Q Consensus 128 ~dkl~~i~~~v~~vk~im~~ni~~~l~Rge 157 (219)
.|++.+++.+|+||++||.+||+++|+||+
T Consensus 8 ~d~l~~vq~qvdeVk~IM~~NIdkvLeRg~ 37 (38)
T 3fie_C 8 NRRLQQTQAQVDEVVDIMRVNVDKVLERDC 37 (38)
T ss_dssp CCSSCEESCCCCCSCCCCTTTHHHHSCCBC
T ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHcCC
Confidence 389999999999999999999999999996
No 17
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=98.15 E-value=4.7e-07 Score=75.72 Aligned_cols=32 Identities=31% Similarity=0.727 Sum_probs=23.9
Q ss_pred hhHHHHHHHHhhhhhhhchhcHHHHHhhhhhH
Q 027720 128 ISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKI 159 (219)
Q Consensus 128 ~dkl~~i~~~v~~vk~im~~ni~~~l~Rge~l 159 (219)
.|++.++|++++||++||.+|||++|+|||+|
T Consensus 279 ~d~l~~lq~~i~ev~~im~~ni~~vl~rge~l 310 (310)
T 3zym_A 279 MDRVRNLQSEVEGVKNIMTQNVERILARGENL 310 (310)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHhccCCC
Confidence 48999999999999999999999999999986
No 18
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=97.50 E-value=0.0034 Score=44.09 Aligned_cols=44 Identities=23% Similarity=0.307 Sum_probs=37.3
Q ss_pred hHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHH
Q 027720 129 SKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQ 172 (219)
Q Consensus 129 dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~ 172 (219)
+.+.++++.+.|+.+++.+==..+-+-|+.+|.+++..++-..+
T Consensus 21 ~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~ 64 (109)
T 3hd7_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDY 64 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 67889999999999998887778889999999999877776544
No 19
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=97.37 E-value=0.00073 Score=51.87 Aligned_cols=86 Identities=13% Similarity=0.295 Sum_probs=63.0
Q ss_pred EEEEEEeCCeeEEeecCCC----CCHHHHHHHHHhcCCCCCCeeEEEECCeEEEEEEeC--CEEEEEEecCCcChhhHHH
Q 027720 7 IYSFVARGTVILAEYTEFT----GNFTGIAAQCLQKLPSSNNKFTYNCDGHTFNYLVDD--GFTYCVVAVESVGRQVPIA 80 (219)
Q Consensus 7 ~Ya~Iar~~~iLae~~~~~----~~~~~~a~~il~~i~~~~~k~~~~~~~~~~~~l~~~--~~~~~~v~d~~~~~~~af~ 80 (219)
+++.+.+|+.||=.|+... ...+.+++.++=.=..+ ..+++.|+|...+..+| +++|++|-..-.+-..+=.
T Consensus 13 ~~~IfTkGGvVLWs~~~~~~~~~~~IN~LIr~VlLEER~~--~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~YiD~ 90 (185)
T 2fh5_A 13 FFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGG--NNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTYVDK 90 (185)
T ss_dssp EEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC---------CCCCCEEEEEEETTTTEEEEEEESCGGGHHHHHH
T ss_pred EEEEEeCCeEEEEeecCCcccccchHHHHHHHhhhccccC--CCceeEcCeEEEEEEeccCCEEEEEEEcccccchHHHH
Confidence 5788899999999885433 23566666665433322 23688899999998876 6999999888888888889
Q ss_pred HHHHHHHHHHhhhC
Q 027720 81 FLERVKEDFIKRYG 94 (219)
Q Consensus 81 fL~~i~~~f~~~~~ 94 (219)
||++++..|...|.
T Consensus 91 LL~~v~~~Fv~~Y~ 104 (185)
T 2fh5_A 91 LIDDVHRLFRDKYR 104 (185)
T ss_dssp HHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999984
No 20
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=95.05 E-value=0.33 Score=32.60 Aligned_cols=50 Identities=8% Similarity=0.201 Sum_probs=25.8
Q ss_pred HHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHHh
Q 027720 130 KLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQ 179 (219)
Q Consensus 130 kl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~~ 179 (219)
.+.+++.-+.+.-+-+.++=+++=+=.++-|+|.+.|.....+|...++.
T Consensus 13 ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rk 62 (91)
T 3hd7_A 13 QVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK 62 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433333333333333333445556666777777777776553
No 21
>2fz0_A R-snare NYV1P, V-snare component of the vacuolar snare complex involved in vesicle fusion; inhibits...; snare protein, longin domain; NMR {Saccharomyces cerevisiae}
Probab=88.30 E-value=1.5 Score=31.48 Aligned_cols=60 Identities=25% Similarity=0.375 Sum_probs=43.6
Q ss_pred HHHHH-HHHHhcCCCCC-CeeEEE----ECCeEEEEEE---eCCEEEEEEecCCcChhhHHHHHHHHHH
Q 027720 28 FTGIA-AQCLQKLPSSN-NKFTYN----CDGHTFNYLV---DDGFTYCVVAVESVGRQVPIAFLERVKE 87 (219)
Q Consensus 28 ~~~~a-~~il~~i~~~~-~k~~~~----~~~~~~~~l~---~~~~~~~~v~d~~~~~~~af~fL~~i~~ 87 (219)
|..++ ..++.++-|-+ .|.+-. .|||-.+|-. +++.+|+|.+..+.|+-++...|.++++
T Consensus 46 Fh~Li~dmViPkVV~v~GNKVTKmS~~LIDGyDCYYtT~~~~~~~VlVCFt~~dvPKILPiRlLSeLk~ 114 (149)
T 2fz0_A 46 FHNLIMDMVLPKVVPIKGNKVTKMSMNLIDGFDCFYSTDDHDPKTVYVCFTLVDIPKILPIRILSGLQE 114 (149)
T ss_dssp HHHHHHHTTGGGCCCCSSCSSEECCSCCSSSEEEEECCCSSCTTEEEEEEEETTSCSSHHHHHHHHHTT
T ss_pred HHHHHHheecceEEecCCCeEEEEeeeccccceeeeeccCCCCCeEEEEEEecCCcccccHHHHhhhcc
Confidence 44443 34566665442 343332 3899888866 3578999999999999999999999976
No 22
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=87.32 E-value=6.4 Score=28.21 Aligned_cols=47 Identities=9% Similarity=0.131 Sum_probs=41.8
Q ss_pred EEEECCeEEEEEEeCCEEEEEEecCCcChhhHHHHHHHHHHHHHhhh
Q 027720 47 TYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFIKRY 93 (219)
Q Consensus 47 ~~~~~~~~~~~l~~~~~~~~~v~d~~~~~~~af~fL~~i~~~f~~~~ 93 (219)
.+..+++.|-|...+++.|+++++.+.+.-..+.||..+.+.+..-+
T Consensus 49 ~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~le~L~~~ve~l~~yf 95 (142)
T 2vgl_S 49 FVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYF 95 (142)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEEECCEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 56789999999888999999999999999999999999988887766
No 23
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=85.56 E-value=0.3 Score=34.58 Aligned_cols=52 Identities=8% Similarity=0.174 Sum_probs=29.3
Q ss_pred hHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHHhH
Q 027720 129 SKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQG 180 (219)
Q Consensus 129 dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~~s 180 (219)
+.+..++..+.+.-+-+.+.=+++=+=.++-+.|.+.|...+.+|...++..
T Consensus 40 ~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkm 91 (119)
T 2kog_A 40 AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 91 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555444444444434333333334555567778888888888776653
No 24
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=83.46 E-value=4.6 Score=25.85 Aligned_cols=44 Identities=23% Similarity=0.307 Sum_probs=36.6
Q ss_pred hHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHH
Q 027720 129 SKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQ 172 (219)
Q Consensus 129 dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~ 172 (219)
+.+.++++.+.++.+++.+=-..+.+-|+-||.++...++-...
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~ 53 (77)
T 1jth_B 10 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDY 53 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 57889999999999999887778889999999988776665543
No 25
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=83.33 E-value=11 Score=27.51 Aligned_cols=48 Identities=13% Similarity=0.199 Sum_probs=42.3
Q ss_pred EEEECCeEEEEEEeCCEEEEEEecCCcChhhHHHHHHHHHHHHHhhhC
Q 027720 47 TYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFIKRYG 94 (219)
Q Consensus 47 ~~~~~~~~~~~l~~~~~~~~~v~d~~~~~~~af~fL~~i~~~f~~~~~ 94 (219)
.+..+++.|.|...+++.|+++++.+.+.-..+.||..+.+.+..-++
T Consensus 49 ~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~le~L~~~vevl~~yf~ 96 (158)
T 1w63_Q 49 FLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFG 96 (158)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHS
T ss_pred eEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 567899999998889999999999999999999999999888877663
No 26
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=82.77 E-value=10 Score=32.48 Aligned_cols=90 Identities=11% Similarity=0.129 Sum_probs=58.5
Q ss_pred cceEEEEEEeC-Cee-EEe-ecC-CCCC-HHHHHHHHHhcCCCCCCeeEEEECCeEEEEEEeCCEEEEEEecCCcChhhH
Q 027720 4 QSLIYSFVARG-TVI-LAE-YTE-FTGN-FTGIAAQCLQKLPSSNNKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVP 78 (219)
Q Consensus 4 ~~i~Ya~Iar~-~~i-Lae-~~~-~~~~-~~~~a~~il~~i~~~~~k~~~~~~~~~~~~l~~~~~~~~~v~d~~~~~~~a 78 (219)
|||...+|... +.+ |+- |.. ...+ .+..-+.++.+.......-.+..+++.|.|...+++.|+|+++.+.+.-..
T Consensus 1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~ 80 (423)
T 1w63_M 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSLV 80 (423)
T ss_dssp -CCCEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHHH
T ss_pred CceEEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence 45666666653 444 443 332 2222 333333444332211112356789999999989999999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 027720 79 IAFLERVKEDFIKRY 93 (219)
Q Consensus 79 f~fL~~i~~~f~~~~ 93 (219)
+.||..+.+.+..-+
T Consensus 81 le~L~~~v~~l~~yf 95 (423)
T 1w63_M 81 FSFLYKVVQVFSEYF 95 (423)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988887766
No 27
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=81.46 E-value=25 Score=30.14 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=43.1
Q ss_pred eEEEECCeEEEEEEeCCEEEEEEecCCcChhhHHHHHHHHHHHHHhhhC
Q 027720 46 FTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFIKRYG 94 (219)
Q Consensus 46 ~~~~~~~~~~~~l~~~~~~~~~v~d~~~~~~~af~fL~~i~~~f~~~~~ 94 (219)
-.+..+++.|.|...+++.|+|+++.+.+.-..+.||..+.+.+..-++
T Consensus 46 ~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le~L~~~v~vl~~yf~ 94 (435)
T 2vgl_M 46 PVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFG 94 (435)
T ss_dssp SEEEETTEEEEEEEETTEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CEEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3567899999998889999999999999999999999999888877664
No 28
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=80.82 E-value=7.5 Score=23.78 Aligned_cols=54 Identities=7% Similarity=0.083 Sum_probs=33.5
Q ss_pred HHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHHhHHHHHHHHHH
Q 027720 136 AQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWF 189 (219)
Q Consensus 136 ~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~~s~~l~~~~~~ 189 (219)
+++..++.-+.+..+-+.++-+++-.=.++-+.|.+.|..+...|...++..-.
T Consensus 4 d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~ 57 (63)
T 1n7s_A 4 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666556566666666555566666667777777777766665543
No 29
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=80.05 E-value=15 Score=26.78 Aligned_cols=88 Identities=11% Similarity=0.150 Sum_probs=60.9
Q ss_pred ceEEEEEEe--CCeeEEeecCCC-CCH---HHHHHHHHhcCCCCCCeeEEEECCeEEEEEEeCCEEEEEEecCCcChhhH
Q 027720 5 SLIYSFVAR--GTVILAEYTEFT-GNF---TGIAAQCLQKLPSSNNKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVP 78 (219)
Q Consensus 5 ~i~Ya~Iar--~~~iLae~~~~~-~~~---~~~a~~il~~i~~~~~k~~~~~~~~~~~~l~~~~~~~~~v~d~~~~~~~a 78 (219)
+|.+-+|-. |.++|+-|=..+ .+. ....+.+.+++.+.+ .-.+..+++.+.|....++.|+++++.+.+.-..
T Consensus 12 mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r~~-~~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel~i 90 (153)
T 3tjz_C 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTD-SEIALLEGLTVVYKSSIDLYFYVIGSSYENELML 90 (153)
T ss_dssp CEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSSCC-CCEEEETTEEEEEEECSSCEEEEEEETTSCHHHH
T ss_pred HheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-CCEEEECCEEEEEEEECCEEEEEEEcCCCChHHH
Confidence 455555554 457777653322 222 223334444443333 2367789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 027720 79 IAFLERVKEDFIKRY 93 (219)
Q Consensus 79 f~fL~~i~~~f~~~~ 93 (219)
+.||..+.+.+..-+
T Consensus 91 le~L~~~ve~l~~yf 105 (153)
T 3tjz_C 91 MTVLNCLFDSLSQML 105 (153)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999888777
No 30
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=79.68 E-value=10 Score=27.38 Aligned_cols=86 Identities=9% Similarity=0.123 Sum_probs=54.1
Q ss_pred HHHHhcCCCC---CCeeEEEECCeEEEEEE-eCCEEEEEEecCCcChhhHHHHHHHHH-HHHHhhhCCCCCc-ccccccc
Q 027720 33 AQCLQKLPSS---NNKFTYNCDGHTFNYLV-DDGFTYCVVAVESVGRQVPIAFLERVK-EDFIKRYGGGKAA-TAVANGL 106 (219)
Q Consensus 33 ~~il~~i~~~---~~k~~~~~~~~~~~~l~-~~~~~~~~v~d~~~~~~~af~fL~~i~-~~f~~~~~~~~~~-~~~~~~~ 106 (219)
..+.+++.|. ..-.+++.+.|..|+.. -.|+=|+.++|+..+ -.-.||.+|. +.|..-.-.+..- ...|-.
T Consensus 46 ~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~TgiKFvl~td~~~~--~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~- 122 (145)
T 2j3t_C 46 RSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIKVVMNTDLGVG--PIRDVLHHIYSALYVEFVVKNPLCPLGQTVQ- 122 (145)
T ss_dssp HHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSCEEEEEECTTCC--CCHHHHHHHHHTTHHHHTTTCTTSCTTSCCC-
T ss_pred HHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCCEEEEEecCCcc--hHHHHHHHHHHHHHHHHHhcCCCCCCCCcee-
Confidence 4556666654 24467778888776655 579999999998754 3568999999 5666522212111 111111
Q ss_pred hhhhhHHHHHhhhhh
Q 027720 107 NKEFGPKLKEHMQYC 121 (219)
Q Consensus 107 ~~~f~~~l~~~~~~~ 121 (219)
...|+..++.+++.+
T Consensus 123 s~~Fd~~v~~~~~~~ 137 (145)
T 2j3t_C 123 SELFRSRLDSYVRSL 137 (145)
T ss_dssp CHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHhC
Confidence 156888888877654
No 31
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=78.99 E-value=1.6 Score=28.00 Aligned_cols=52 Identities=6% Similarity=0.122 Sum_probs=31.0
Q ss_pred hHHhhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 027720 158 KIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVLGIIIALILII 209 (219)
Q Consensus 158 ~le~L~~ks~~L~~~s~~f~~~s~~l~~~~~~~~~k~~iii~~vv~~~~~~i 209 (219)
+++.+.+...+.-.++.+|-+.++|=.|+-+++-.|...+..+++-++-|+|
T Consensus 4 ~~~~~~e~~~~f~kd~~rvlk~~~KPdr~EF~~iak~~~iG~~imG~IGfiI 55 (74)
T 1rh5_B 4 DFNQKIEQLKEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIGYII 55 (74)
T ss_dssp --------CCHHHHHHHHHHHSEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666677778888888888888888888887766555544444444
No 32
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=78.45 E-value=13 Score=24.98 Aligned_cols=52 Identities=8% Similarity=0.130 Sum_probs=28.0
Q ss_pred HHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHHhHHHHHHHH
Q 027720 136 AQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKM 187 (219)
Q Consensus 136 ~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~~s~~l~~~~ 187 (219)
+++..++.-+.+..+-+.++=+++-.=.++-+.|.+.|..+...|...++..
T Consensus 30 d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A 81 (96)
T 1sfc_A 30 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSA 81 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555666655555555444
No 33
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=78.11 E-value=2.4 Score=27.65 Aligned_cols=48 Identities=15% Similarity=0.063 Sum_probs=29.4
Q ss_pred hHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 027720 162 LVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVLGIIIALILII 209 (219)
Q Consensus 162 L~~ks~~L~~~s~~f~~~s~~l~~~~~~~~~k~~iii~~vv~~~~~~i 209 (219)
+.+...++-.++.+|-+.++|=.|+-+++-.|...+..+++-++-|+|
T Consensus 21 ~~e~~~~f~kd~~rvlk~~~KPdr~Ef~~iak~t~iG~~imG~IGfiI 68 (80)
T 2ww9_B 21 LVEAPVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAI 68 (80)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666667777766677888777777666555554444443
No 34
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=77.97 E-value=9.3 Score=23.21 Aligned_cols=52 Identities=13% Similarity=0.211 Sum_probs=28.7
Q ss_pred HhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHHhHHHHHHHHH
Q 027720 137 QVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMW 188 (219)
Q Consensus 137 ~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~~s~~l~~~~~ 188 (219)
++..++.-+.+..+-+.++=+++=.=.++-+.|.+.|..+...|+..++..-
T Consensus 3 ~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~ 54 (61)
T 3b5n_A 3 RTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGAN 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555444445555556666666666666665543
No 35
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=74.91 E-value=8.1 Score=25.99 Aligned_cols=48 Identities=17% Similarity=0.311 Sum_probs=37.7
Q ss_pred hHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHH
Q 027720 129 SKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDF 176 (219)
Q Consensus 129 dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f 176 (219)
.-...+...|+++++-|.+-|+.+-..=..||.+..++..|...|..+
T Consensus 36 ~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L 83 (96)
T 1t3j_A 36 TTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQL 83 (96)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 345788999999999999999888888888887777777666665544
No 36
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=72.62 E-value=15 Score=22.97 Aligned_cols=44 Identities=16% Similarity=0.322 Sum_probs=37.2
Q ss_pred hHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHH
Q 027720 129 SKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQ 172 (219)
Q Consensus 129 dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~ 172 (219)
+.+.++++.+.++.+++.+=-.-|-+-|+-||.++...++-...
T Consensus 6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~ 49 (71)
T 2nps_B 6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVH 49 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 67889999999999999887777889999999998877766544
No 37
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=69.48 E-value=17 Score=22.51 Aligned_cols=46 Identities=17% Similarity=0.354 Sum_probs=38.6
Q ss_pred hHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHH
Q 027720 129 SKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQ 174 (219)
Q Consensus 129 dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~ 174 (219)
+.+.++++.+.++.+++.+=-..+.+-|+.||.++...++-.....
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~ 55 (69)
T 3b5n_B 10 QELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVE 55 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999988778888999999999987777665533
No 38
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=67.45 E-value=42 Score=26.08 Aligned_cols=87 Identities=11% Similarity=0.033 Sum_probs=56.0
Q ss_pred HHHHhcCCCCC---CeeEEEECCeEEEEEE-eCCEEEEEEecCCcChhhHHHHHHHHHHHHHhhhCCCCCc-ccccccch
Q 027720 33 AQCLQKLPSSN---NKFTYNCDGHTFNYLV-DDGFTYCVVAVESVGRQVPIAFLERVKEDFIKRYGGGKAA-TAVANGLN 107 (219)
Q Consensus 33 ~~il~~i~~~~---~k~~~~~~~~~~~~l~-~~~~~~~~v~d~~~~~~~af~fL~~i~~~f~~~~~~~~~~-~~~~~~~~ 107 (219)
..+.+++.|.+ .-..++.+.|..|+.. -.|+-|++++|+. ....-.||.+|.+.|....-.+..- ...|-. .
T Consensus 119 d~i~~klsp~~~s~g~~~~~T~~ykl~~y~T~TgiKFVLltd~~--~~~ir~~l~~IyelYvd~V~kNPFY~~~~pI~-s 195 (219)
T 2j3t_D 119 FAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPR--QAGIDSLLRKIYEIYSDFALKNPFYSLEMPIR-C 195 (219)
T ss_dssp HHHHHHTCSSSSCCSCSEEEESSCEEEEEECTTSCEEEEEECTT--CCCHHHHHHHHHHHHHHHHTTCTTCCTTSCCC-C
T ss_pred HHHHHHhCCCCCCCCeeEEecCceEEEEEEcCCCCEEEEEecCC--chHHHHHHHHHHHHHHHHhccCCCCCCCCccc-h
Confidence 44556776642 3357778888777655 5799999999986 4466789999998776642212111 111111 1
Q ss_pred hhhhHHHHHhhhhhc
Q 027720 108 KEFGPKLKEHMQYCI 122 (219)
Q Consensus 108 ~~f~~~l~~~~~~~~ 122 (219)
..|+..++.+++.+.
T Consensus 196 ~~Fd~~v~~l~~~~~ 210 (219)
T 2j3t_D 196 ELFDQNLKLALEVAE 210 (219)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh
Confidence 568888888887663
No 39
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=67.20 E-value=1.2 Score=28.08 Aligned_cols=50 Identities=12% Similarity=0.117 Sum_probs=32.4
Q ss_pred HHhhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 027720 159 IELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVLGIIIALILI 208 (219)
Q Consensus 159 le~L~~ks~~L~~~s~~f~~~s~~l~~~~~~~~~k~~iii~~vv~~~~~~ 208 (219)
++.+.+...+.-.++.+|-+.++|=.|+-+++-.|...+..+++-++-|+
T Consensus 4 ~~~~~e~~~~f~k~~~r~lk~~~KPdr~Ef~~iak~~~iG~~i~G~IGf~ 53 (68)
T 2wwb_B 4 VMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFF 53 (68)
T ss_dssp SSSSSTTHHHHHHHHHHHHHHCCCCCTHHHHHHHHHSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666677777888887777888888877665555444444444
No 40
>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} SCOP: a.101.1.1 PDB: 2utg_A
Probab=66.51 E-value=8.5 Score=24.20 Aligned_cols=42 Identities=10% Similarity=0.091 Sum_probs=33.4
Q ss_pred HHHhhhhhcCCchhhhHHHHHHHHhhhhhhhchhcHHHHHhh
Q 027720 114 LKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDR 155 (219)
Q Consensus 114 l~~~~~~~~~~~~~~dkl~~i~~~v~~vk~im~~ni~~~l~R 155 (219)
....++.|+.+|+..+...++++-++....-=+.|+.++|++
T Consensus 21 Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~k 62 (70)
T 1utg_A 21 YETSLKEFEPDDTMKDAGMQMKKVLDSLPQTTRENIMKLTEK 62 (70)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 445567787888877888899999998888888888888765
No 41
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=66.11 E-value=31 Score=25.22 Aligned_cols=57 Identities=11% Similarity=0.100 Sum_probs=40.8
Q ss_pred HHHHhcCCCCC---CeeEEEECCeEEEEEE-eCCEEEEEEecCCcChhhHHHHHHHHHH-HHHh
Q 027720 33 AQCLQKLPSSN---NKFTYNCDGHTFNYLV-DDGFTYCVVAVESVGRQVPIAFLERVKE-DFIK 91 (219)
Q Consensus 33 ~~il~~i~~~~---~k~~~~~~~~~~~~l~-~~~~~~~~v~d~~~~~~~af~fL~~i~~-~f~~ 91 (219)
+.+.+++.|.+ .-..+..+.|..|+.. -.|+-|++++|+..+ -.-.+|.+|.. .|..
T Consensus 52 ~~i~~kls~~~~~~~f~~~~T~~ykl~~~eT~TgiKFvl~td~~~~--~i~~~l~~iy~~lYv~ 113 (159)
T 3cue_C 52 RSITQKLSKGSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQ--SYTQVLQYIYSHIYVK 113 (159)
T ss_dssp HHHHHHSCCSSSCCCEEEEECSSCBEEEECCSSCCEEEEECCSSSS--CTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCCeEEEeeCCEEEEEEEeCCCCEEEEEeCCCcc--hHHHHHHHHHHHHHHH
Confidence 45667777653 3456667888777765 579999999998744 45578999997 6655
No 42
>1ccd_A Clara cell 17 KD protein; phospholipase A2 inhibitor; 3.00A {Rattus rattus} SCOP: a.101.1.1
Probab=64.53 E-value=9.5 Score=24.48 Aligned_cols=42 Identities=12% Similarity=0.057 Sum_probs=33.5
Q ss_pred HHHhhhhhcCCchhhhHHHHHHHHhhhhhhhchhcHHHHHhh
Q 027720 114 LKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDR 155 (219)
Q Consensus 114 l~~~~~~~~~~~~~~dkl~~i~~~v~~vk~im~~ni~~~l~R 155 (219)
.+..++.|+.+|+..+...++++-++....-=+.|+.++|++
T Consensus 23 Y~~~l~~y~~~~~a~eA~~~lK~C~D~ls~e~r~~i~~~l~k 64 (77)
T 1ccd_A 23 YEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 64 (77)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 445667887888877888899999888888888888888765
No 43
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=59.94 E-value=28 Score=21.90 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=12.3
Q ss_pred hhHHhhHHhhhhHHHHHHHHHHh
Q 027720 157 EKIELLVDRTENLRSQAQDFRQQ 179 (219)
Q Consensus 157 e~le~L~~ks~~L~~~s~~f~~~ 179 (219)
++-+.|...|.....+|...++.
T Consensus 43 ~ks~~L~~~s~~F~~~a~~l~r~ 65 (74)
T 2nps_A 43 DKSESLSDNATAFSNRSKQLRRQ 65 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555566666666655543
No 44
>4a4y_A Protein MXIG; protein binding, FHA domain; 1.57A {Shigella flexneri} PDB: 2xxs_A
Probab=57.77 E-value=19 Score=24.38 Aligned_cols=44 Identities=14% Similarity=0.437 Sum_probs=33.4
Q ss_pred cceEEEEEEeCCeeEEeecCCCCCHHHHHHHHHhcCCCCCCeeEEEECCeEEEEEE
Q 027720 4 QSLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSNNKFTYNCDGHTFNYLV 59 (219)
Q Consensus 4 ~~i~Ya~Iar~~~iLae~~~~~~~~~~~a~~il~~i~~~~~k~~~~~~~~~~~~l~ 59 (219)
.-|+|..|++++. |++++..| +++.-+.+--++++++..||..-
T Consensus 84 dgiiyltiskdni--cqfsdekg----------eqidinsqfnsfeydgisfhlkn 127 (146)
T 4a4y_A 84 DGIIYLTISKDNI--CQFSDEKG----------EQIDINSQFNSFEYDGISFHLKN 127 (146)
T ss_dssp CEEEEEEECTTCC--EEEECTTS----------CEECCCSSSSEEEETTEEEEEEE
T ss_pred CcEEEEEEecCcc--eecccccC----------cEeeccccccceeecceEeehhc
Confidence 4589999999985 89988766 34444444568999999999854
No 45
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=56.70 E-value=5.6 Score=24.42 Aligned_cols=49 Identities=12% Similarity=0.076 Sum_probs=29.3
Q ss_pred hhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 027720 161 LLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVLGIIIALILII 209 (219)
Q Consensus 161 ~L~~ks~~L~~~s~~f~~~s~~l~~~~~~~~~k~~iii~~vv~~~~~~i 209 (219)
++.+...+.-.++.+|-+.++|=.|+-+.+-.|...+..+++-++-|+|
T Consensus 3 ~~~e~~~~f~kd~~rvlk~~~KPd~~Ef~~iak~~~iG~~i~G~iGf~I 51 (61)
T 3mp7_B 3 ELQERIRHFWKESRRAFLVTKKPNWATYKRAAKITGLGIILIGLIGMLI 51 (61)
T ss_dssp -----CTTHHHHHTHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666777778888877778888777777666555444444443
No 46
>1utr_A Uteroglobin; clara cell 17 kDa protein (CC10), phospholipase A2 inhibitor, clara cell phospholipid-binding protein, progesterone binding; HET: PCB; NMR {Rattus norvegicus} SCOP: a.101.1.1
Probab=53.04 E-value=15 Score=24.53 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=32.8
Q ss_pred HHhhhhhcCCchhhhHHHHHHHHhhhhhhhchhcHHHHHhh
Q 027720 115 KEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDR 155 (219)
Q Consensus 115 ~~~~~~~~~~~~~~dkl~~i~~~v~~vk~im~~ni~~~l~R 155 (219)
+..++.|+.+|...+...++|+=+++....=+.|+.++|++
T Consensus 43 ~~~L~~y~~~~~a~~A~~~lK~Cvd~ls~e~r~~i~~ll~~ 83 (96)
T 1utr_A 43 EAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 83 (96)
T ss_dssp HHHHGGGCCCHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44556787788777888999999998888888888888764
No 47
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=51.27 E-value=18 Score=17.89 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 027720 196 LIVLGIIIALILIIVL 211 (219)
Q Consensus 196 iii~~vv~~~~~~i~~ 211 (219)
+|+..+...+++.+|+
T Consensus 10 LIviav~aaVllylW~ 25 (26)
T 3j1r_A 10 LILIAVAAAVLLYTWV 25 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3344444445555553
No 48
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=51.18 E-value=9.8 Score=22.73 Aligned_cols=15 Identities=20% Similarity=0.540 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHhcC
Q 027720 201 IIIALILIIVLSVCG 215 (219)
Q Consensus 201 vv~~~~~~i~~~~c~ 215 (219)
++++.+++..++=||
T Consensus 23 LllL~li~~~LwK~G 37 (54)
T 2knc_A 23 LLLLTILVLAMWKVG 37 (54)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC
Confidence 334444455567784
No 49
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=49.65 E-value=89 Score=24.21 Aligned_cols=76 Identities=13% Similarity=0.127 Sum_probs=45.4
Q ss_pred eeEEEECCeEEEEEE-eCCEEEEEEecCCcCh----------------------hhHHHHHHHHHHHHHhhhCCCCC-cc
Q 027720 45 KFTYNCDGHTFNYLV-DDGFTYCVVAVESVGR----------------------QVPIAFLERVKEDFIKRYGGGKA-AT 100 (219)
Q Consensus 45 k~~~~~~~~~~~~l~-~~~~~~~~v~d~~~~~----------------------~~af~fL~~i~~~f~~~~~~~~~-~~ 100 (219)
-..+..+.+..|+.. -.|+=|++++|+..+. ...-.||.+|...|.+..-.+-. ..
T Consensus 119 ~~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~~~~~~~~~s~l~e~~ir~ff~~VYelYvd~VmkNPFY~~ 198 (219)
T 3cue_A 119 LRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSDYVMKDPSYSM 198 (219)
T ss_dssp CCEEEESSCEEEEEECTTSCEEEEEESSCC--------------------CHHHHHHHHHHHHHHHHHHHHHHSCTTCCT
T ss_pred eEEEEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 346667777666544 5799999999987633 45678999999877763211111 11
Q ss_pred cccccchhhhhHHHHHhhhhh
Q 027720 101 AVANGLNKEFGPKLKEHMQYC 121 (219)
Q Consensus 101 ~~~~~~~~~f~~~l~~~~~~~ 121 (219)
..+-. ...|+..++.+++.+
T Consensus 199 ~~pI~-S~~Fd~~V~~~~~~~ 218 (219)
T 3cue_A 199 EMPIR-SNLFDEKVKKMVENL 218 (219)
T ss_dssp TSCCC-CHHHHHHHHHHHHHH
T ss_pred CCccc-cHHHHHHHHHHHHhc
Confidence 11110 145777777766543
No 50
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=49.36 E-value=43 Score=20.47 Aligned_cols=48 Identities=10% Similarity=0.212 Sum_probs=26.1
Q ss_pred HHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHH
Q 027720 131 LAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQ 178 (219)
Q Consensus 131 l~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~ 178 (219)
+..+...+.+..+-+.+.-+++=.=.++-+.|.+.+++.+.+|..+++
T Consensus 13 v~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~ 60 (63)
T 1urq_A 13 ASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMML 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444455555444555566666666666666666554
No 51
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=49.18 E-value=68 Score=22.74 Aligned_cols=74 Identities=9% Similarity=-0.016 Sum_probs=46.8
Q ss_pred eeEEEECCeEEEEE-EeCCEEEEEEecCCcChhhHHHHHHHHHHHHHhhhCCCCCc-ccccccchhhhhHHHHHhhhhh
Q 027720 45 KFTYNCDGHTFNYL-VDDGFTYCVVAVESVGRQVPIAFLERVKEDFIKRYGGGKAA-TAVANGLNKEFGPKLKEHMQYC 121 (219)
Q Consensus 45 k~~~~~~~~~~~~l-~~~~~~~~~v~d~~~~~~~af~fL~~i~~~f~~~~~~~~~~-~~~~~~~~~~f~~~l~~~~~~~ 121 (219)
..+...+++..|+. .-.|+=|+.++|+. .....-.||++|.+.|..... +..- ...|-. ...|+..++++++.|
T Consensus 64 ~~~~~~~~y~v~~~~T~tg~Kfvl~~d~~-~~~~i~~~~~~iy~~Y~~~v~-NPfy~~~~pI~-s~~Fd~~v~~~~~~~ 139 (142)
T 2j3w_A 64 KTVDKFNEWFVSAFVTAGHMRFIMLHDVR-QEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIR-SSAFDRKVQFLGKKH 139 (142)
T ss_dssp EEEEEETTEEEEEEECTTCCEEEEEESSC-CHHHHHHHHHHHHHHHHHHHH-STTCCTTCCCC-CHHHHHHHHHHHHHH
T ss_pred EeeecccceEEEEEEcCCCcEEEEEeCCC-CcHHHHHHHHHHHHHHHHHhc-CCCCCCCCcee-cHHHHHHHHHHHHHh
Confidence 34555677766554 46799999999874 244677899999987766432 2111 111111 156888888887665
No 52
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=49.16 E-value=11 Score=22.47 Aligned_cols=15 Identities=27% Similarity=0.627 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHhcC
Q 027720 201 IIIALILIIVLSVCG 215 (219)
Q Consensus 201 vv~~~~~~i~~~~c~ 215 (219)
++++.+++..++=||
T Consensus 20 LLLL~Lii~~LwK~G 34 (54)
T 2l8s_A 20 LLLLMLLILALWKIG 34 (54)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC
Confidence 333444445567784
No 53
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=48.21 E-value=45 Score=20.43 Aligned_cols=45 Identities=22% Similarity=0.301 Sum_probs=37.8
Q ss_pred hHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHH
Q 027720 129 SKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQA 173 (219)
Q Consensus 129 dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s 173 (219)
+.+.++++.+.++.+++.+=-..+.+-|+.||.++...++-....
T Consensus 12 ~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v 56 (68)
T 1n7s_B 12 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYV 56 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 678899999999999998877788899999999987776665543
No 54
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=48.12 E-value=44 Score=20.30 Aligned_cols=45 Identities=13% Similarity=0.293 Sum_probs=37.5
Q ss_pred hHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHH
Q 027720 129 SKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQA 173 (219)
Q Consensus 129 dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s 173 (219)
+.+.++++.+.++.+++.+=-.-+-+-|+.||.++...++-....
T Consensus 9 ~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v 53 (65)
T 1gl2_B 9 SSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHV 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999998877778899999999987776665543
No 55
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=47.71 E-value=20 Score=23.23 Aligned_cols=52 Identities=21% Similarity=0.276 Sum_probs=20.6
Q ss_pred hhhhhHHhhHHhhhhHHHHHHHHHHhHHHHHHH---HHHHHhHHHHHHHHHHHHH
Q 027720 154 DRGEKIELLVDRTENLRSQAQDFRQQGTQMRRK---MWFQNMKIKLIVLGIIIAL 205 (219)
Q Consensus 154 ~Rge~le~L~~ks~~L~~~s~~f~~~s~~l~~~---~~~~~~k~~iii~~vv~~~ 205 (219)
+.|++.+...++-+.+.+...+|.+.++++=++ -=|+-|...+-+.++.+++
T Consensus 6 ~k~~~~~~~~d~~~~~~e~~~~f~kd~~rvlk~~~KPdr~Ef~~iak~t~iG~~i 60 (80)
T 2ww9_B 6 EKGEEKKQSNNQVEKLVEAPVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIA 60 (80)
T ss_dssp ---------------CCHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 445666666666677777777888877655432 2344555555444444333
No 56
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=47.16 E-value=30 Score=21.89 Aligned_cols=12 Identities=0% Similarity=0.401 Sum_probs=5.3
Q ss_pred HHHhHHHHHHHH
Q 027720 189 FQNMKIKLIVLG 200 (219)
Q Consensus 189 ~~~~k~~iii~~ 200 (219)
|...++--++..
T Consensus 16 Y~tLRigGLifA 27 (74)
T 2zxe_G 16 YYRLRVVGLIVA 27 (74)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHheeccchhH
Confidence 444554444433
No 57
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=47.02 E-value=50 Score=20.62 Aligned_cols=57 Identities=5% Similarity=0.128 Sum_probs=44.5
Q ss_pred hHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHHhHHHHHH
Q 027720 129 SKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRR 185 (219)
Q Consensus 129 dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~~s~~l~~ 185 (219)
+.....-.-+++..++=..++..+-+-||+|+..+..-+.+..+.+.=.++.+.|+.
T Consensus 12 ~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~ 68 (70)
T 3b5n_C 12 ASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKK 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445556666777778888899999999999999998888888887766666666653
No 58
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=46.93 E-value=9.6 Score=19.27 Aligned_cols=24 Identities=29% Similarity=0.624 Sum_probs=14.6
Q ss_pred HHHHHhhhhhhhchhcHHHHHhhhhhHH
Q 027720 133 KVKAQVSEVKGVMMDNIEKVLDRGEKIE 160 (219)
Q Consensus 133 ~i~~~v~~vk~im~~ni~~~l~Rge~le 160 (219)
.++.++.++| .++|.+|+|=|+++
T Consensus 3 ~IkkELtQIK----~kvDsLLe~Le~~~ 26 (28)
T 1txp_A 3 AIKKELTQIK----QKVDSLLENLEKIE 26 (28)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHSS
T ss_pred HHHHHHHHHH----HHHHHHHHHHHhhh
Confidence 3455555543 46777887766654
No 59
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=46.58 E-value=48 Score=20.21 Aligned_cols=51 Identities=12% Similarity=0.210 Sum_probs=28.8
Q ss_pred HHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHHhHHHHHHH
Q 027720 136 AQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRK 186 (219)
Q Consensus 136 ~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~~s~~l~~~ 186 (219)
+.+..++.-+.+..+-+.++=+++=.=.++-+.|.+.|..+...|+..++.
T Consensus 9 d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~ 59 (65)
T 1gl2_A 9 DRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTT 59 (65)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555544555555666666676666665554
No 60
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=45.23 E-value=4.5 Score=28.56 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Q 027720 188 WFQNMKIKLIVLGIIIALILIIVL 211 (219)
Q Consensus 188 ~~~~~k~~iii~~vv~~~~~~i~~ 211 (219)
.++.+.+.++++++++++++++|+
T Consensus 101 ~~~~~~~~~i~~~~~i~i~~~~~~ 124 (130)
T 3fym_A 101 KSKEPIQLLVIMGITVLITLLLWI 124 (130)
T ss_dssp ------------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 345555566665555555555554
No 61
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=45.12 E-value=13 Score=18.16 Aligned_cols=13 Identities=15% Similarity=0.608 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHh
Q 027720 180 GTQMRRKMWFQNM 192 (219)
Q Consensus 180 s~~l~~~~~~~~~ 192 (219)
-..+||+||..+.
T Consensus 4 ~Q~~rRr~wL~~l 16 (24)
T 3h3g_B 4 IQDLRRRFFLHHL 16 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3578899998874
No 62
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=43.56 E-value=77 Score=28.39 Aligned_cols=24 Identities=13% Similarity=0.289 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHh
Q 027720 169 LRSQAQDFRQQGTQMRRKMWFQNM 192 (219)
Q Consensus 169 L~~~s~~f~~~s~~l~~~~~~~~~ 192 (219)
|..+=+.|+.+-++|..+|-..+-
T Consensus 517 ~~~~~~~~~e~~~ql~~kme~~~~ 540 (592)
T 1f5n_A 517 MEQKERSYQEHLKQLTEKMENDRV 540 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556677777777766655544
No 63
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=43.47 E-value=37 Score=19.01 Aligned_cols=18 Identities=22% Similarity=0.499 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 027720 201 IIIALILIIVLSVCGGFN 218 (219)
Q Consensus 201 vv~~~~~~i~~~~c~gf~ 218 (219)
++++.+++..++=||=|+
T Consensus 21 LllL~li~~~LwK~GFFk 38 (42)
T 2k1a_A 21 LLLLTILVLAMWKVGFFK 38 (42)
T ss_dssp HHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHcCccc
Confidence 333444455567884333
No 64
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=41.23 E-value=53 Score=19.21 Aligned_cols=41 Identities=7% Similarity=0.191 Sum_probs=32.5
Q ss_pred HHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHH
Q 027720 133 KVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQA 173 (219)
Q Consensus 133 ~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s 173 (219)
....-++++.++-.+.+..+-+.||+|+...+.-++...+.
T Consensus 4 ~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l 44 (54)
T 1nhl_A 4 RILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDM 44 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHH
Confidence 44566788888889999999999999998887776666553
No 65
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=40.97 E-value=28 Score=22.67 Aligned_cols=47 Identities=9% Similarity=0.234 Sum_probs=39.6
Q ss_pred hhHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHH
Q 027720 128 ISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQ 174 (219)
Q Consensus 128 ~dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~ 174 (219)
.+.....-.-+++.+.+...++..+..-||+|+..+...+.+..+-+
T Consensus 26 l~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~ 72 (83)
T 1l4a_C 26 LESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMK 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677778888999999999999999999999999988887776543
No 66
>1zkr_A Major allergen I polypeptide, fused chain 1, CHAI; CAT allergen, uteroglobin, secretoglobin; 1.64A {Felis catus} SCOP: a.101.1.1 a.101.1.1 PDB: 2ejn_A
Probab=38.55 E-value=40 Score=24.56 Aligned_cols=43 Identities=16% Similarity=0.121 Sum_probs=32.1
Q ss_pred HHHhhhhhcCCchhhhHHHHHHHHhh-hhhhhchhcHHHHHhhh
Q 027720 114 LKEHMQYCIDHPEEISKLAKVKAQVS-EVKGVMMDNIEKVLDRG 156 (219)
Q Consensus 114 l~~~~~~~~~~~~~~dkl~~i~~~v~-~vk~im~~ni~~~l~Rg 156 (219)
.+..++.|+.+|+..+...++++-++ ....-=+.|+.++|++-
T Consensus 22 Yk~~LkkYn~~pealeA~~eLKqCvD~~LS~Etr~nI~klLekI 65 (153)
T 1zkr_A 22 YVEQVAQYKALPVVLENARILKNCVDAKMTEEDKENALSLLDKI 65 (153)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 34555778778877788888998888 77777777887777664
No 67
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=38.12 E-value=83 Score=20.75 Aligned_cols=41 Identities=12% Similarity=0.090 Sum_probs=33.4
Q ss_pred hhHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhh
Q 027720 128 ISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTEN 168 (219)
Q Consensus 128 ~dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~ 168 (219)
..++..+-.++..++--|..++++-.++.+.+-++.+|-..
T Consensus 32 d~~LqeLy~kv~~lRPKL~r~l~~~~~K~~~L~~mn~Kls~ 72 (91)
T 2pjw_V 32 DSKLQNLAQRVFASKARLNYALNDKAQKYNTLIEMNGKISE 72 (91)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888899999999999999999999888877777765444
No 68
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=37.98 E-value=78 Score=20.20 Aligned_cols=44 Identities=23% Similarity=0.307 Sum_probs=37.1
Q ss_pred hHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHH
Q 027720 129 SKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQ 172 (219)
Q Consensus 129 dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~ 172 (219)
..+.++++.+.++.+++.+=-.-|-+-|+-||.++...++-...
T Consensus 21 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~ 64 (83)
T 1sfc_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDY 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 57899999999999999887777889999999998777666544
No 69
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=37.82 E-value=6.6 Score=24.43 Aligned_cols=22 Identities=14% Similarity=0.084 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 027720 193 KIKLIVLGIIIALILIIVLSVC 214 (219)
Q Consensus 193 k~~iii~~vv~~~~~~i~~~~c 214 (219)
++.+++++++.+++|+-+..+|
T Consensus 9 ~~LivlGg~~~lll~~glcI~c 30 (70)
T 2klu_A 9 MALIVLGGVAGLLLFIGLGIFF 30 (70)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHH
Confidence 3335667666666666555564
No 70
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=37.31 E-value=34 Score=18.48 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 027720 196 LIVLGIIIALILIIV 210 (219)
Q Consensus 196 iii~~vv~~~~~~i~ 210 (219)
.++++++++++.+++
T Consensus 7 ~ivalivalIiaIVV 21 (36)
T 1pi7_A 7 AIVALVVAIIIAIVV 21 (36)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444554444443333
No 71
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=35.58 E-value=20 Score=22.54 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=19.5
Q ss_pred HHHhhhhhhhchhcHHHHHhhhh
Q 027720 135 KAQVSEVKGVMMDNIEKVLDRGE 157 (219)
Q Consensus 135 ~~~v~~vk~im~~ni~~~l~Rge 157 (219)
.++++++++|+..|+.++-+|.-
T Consensus 6 ~~~~e~ir~IL~~NLykiRqr~~ 28 (70)
T 2ygg_A 6 KDKEEEIRKILRNNLQKTRQRLR 28 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 46789999999999999988854
No 72
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=34.53 E-value=24 Score=17.77 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=17.0
Q ss_pred hhHHHHHHHHhhhhhhhchhc
Q 027720 128 ISKLAKVKAQVSEVKGVMMDN 148 (219)
Q Consensus 128 ~dkl~~i~~~v~~vk~im~~n 148 (219)
.+|+.-++.+++|-+++..++
T Consensus 5 ~sKm~lLKKKIEEQr~i~~~~ 25 (29)
T 3lcn_C 5 ASKMKLLKKKIEEQREILQKT 25 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 478888999999988887654
No 73
>1spf_A Pulmonary surfactant-associated polypeptide C; lipoprotein(surface FILM); NMR {Sus scrofa} SCOP: j.35.1.1
Probab=34.41 E-value=53 Score=17.20 Aligned_cols=19 Identities=26% Similarity=0.628 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 027720 192 MKIKLIVLGIIIALILIIV 210 (219)
Q Consensus 192 ~k~~iii~~vv~~~~~~i~ 210 (219)
.|-.+|+..++++++.+|.
T Consensus 10 lKrLlivVvVvVlvVvViv 28 (35)
T 1spf_A 10 LKRLLVVVVVVVLVVVVIV 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hheEEEEEeeehhhHHHHH
Confidence 3444455444444444443
No 74
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=34.28 E-value=14 Score=23.81 Aligned_cols=50 Identities=8% Similarity=0.193 Sum_probs=28.9
Q ss_pred HHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHHh
Q 027720 130 KLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQ 179 (219)
Q Consensus 130 kl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~~ 179 (219)
.+..++..+.+.-+-+.+.=+++=+=.++-+.|.+.|.....+|...++.
T Consensus 23 el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk 72 (80)
T 1l4a_A 23 QVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRK 72 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444555567777888888888877654
No 75
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=31.85 E-value=61 Score=17.13 Aligned_cols=20 Identities=10% Similarity=0.243 Sum_probs=8.4
Q ss_pred HHhhHHhhhhHHHHHHHHHH
Q 027720 159 IELLVDRTENLRSQAQDFRQ 178 (219)
Q Consensus 159 le~L~~ks~~L~~~s~~f~~ 178 (219)
+..|++|-+.|-..-.....
T Consensus 3 MnQLE~kVEeLl~~n~~Le~ 22 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEX 22 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHH
Confidence 34444444444433333333
No 76
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=29.72 E-value=1.1e+02 Score=19.42 Aligned_cols=46 Identities=11% Similarity=0.245 Sum_probs=39.3
Q ss_pred hhHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHH
Q 027720 128 ISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQA 173 (219)
Q Consensus 128 ~dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s 173 (219)
.+.+.....-+.++.++-.+.+..+-..||.|+...+..++...+-
T Consensus 22 ~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l 67 (79)
T 1n7s_C 22 LESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDM 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHH
Confidence 4778888889999999999999999999999999887777766553
No 77
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=29.60 E-value=75 Score=23.35 Aligned_cols=76 Identities=13% Similarity=0.225 Sum_probs=37.6
Q ss_pred cCCcChhhHHHHHHHHHHHHHhhhCCCCCcccccccchhhhhHHHHHhhhhhcCCchhhhHHHHHHHHhhhhhhhchhcH
Q 027720 70 VESVGRQVPIAFLERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNI 149 (219)
Q Consensus 70 d~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~dkl~~i~~~v~~vk~im~~ni 149 (219)
|-+|.+...-..|.|.++...+... +..++.|. ..++.....| .+|+=.+.+-.- +..+.-.-+.+.+
T Consensus 85 dfTfD~~~L~~~L~ec~~lL~~lv~----~HLT~KS~-----~Ri~~vF~~f-~~~efL~~lf~~--~~~~~L~kI~~~L 152 (161)
T 3f4m_A 85 DFTFEAAVLAGLLTECRDVLLELVE----HHLTPKSH-----GRIRHVFDHF-SDPGLLTALYGP--DFTQHLGKICDGL 152 (161)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHT----TTSCHHHH-----HHHHHHHHHH-TCHHHHHHHTSG--GGHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHHHHH----hhCCcchH-----HHHHHHHHHh-CCHHHHHHHhCc--HHHHHHHHHHHHH
Confidence 4455566666666666666655442 11222221 3444455555 344322222222 3344444455677
Q ss_pred HHHHhhhh
Q 027720 150 EKVLDRGE 157 (219)
Q Consensus 150 ~~~l~Rge 157 (219)
+++|++|.
T Consensus 153 nklld~g~ 160 (161)
T 3f4m_A 153 RKLLDEGK 160 (161)
T ss_dssp HHHHHTTC
T ss_pred HHHHhCCC
Confidence 88888873
No 78
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=28.87 E-value=27 Score=27.95 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 027720 181 TQMRRKMWFQNMKIKLIVLGIIIALIL 207 (219)
Q Consensus 181 ~~l~~~~~~~~~k~~iii~~vv~~~~~ 207 (219)
.+..+|.|+++.-.+++++++++++++
T Consensus 25 ~~~~kk~~~~~~~~~~~~~~l~~~~~~ 51 (263)
T 3vmt_A 25 GKPPKKKKSKRILLKILLTILIIIALF 51 (263)
T ss_dssp ----------CCTTHHHHHHHHHHHHH
T ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 345566777776555555544444433
No 79
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=28.56 E-value=73 Score=17.04 Aligned_cols=11 Identities=27% Similarity=0.471 Sum_probs=4.4
Q ss_pred HhhHHhhhhHH
Q 027720 160 ELLVDRTENLR 170 (219)
Q Consensus 160 e~L~~ks~~L~ 170 (219)
..|++|-+.|-
T Consensus 4 nQLE~KVEeLl 14 (36)
T 1kd8_B 4 KQLKAKVEELK 14 (36)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 33444444443
No 80
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=26.39 E-value=78 Score=16.67 Aligned_cols=12 Identities=17% Similarity=0.218 Sum_probs=5.0
Q ss_pred HhhHHhhhhHHH
Q 027720 160 ELLVDRTENLRS 171 (219)
Q Consensus 160 e~L~~ks~~L~~ 171 (219)
..|++|-++|-.
T Consensus 4 nQLEdKVEeLl~ 15 (34)
T 3c3f_A 4 XQIEXKLEXILS 15 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 334444444433
No 81
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=25.68 E-value=84 Score=19.44 Aligned_cols=10 Identities=0% Similarity=0.458 Sum_probs=4.0
Q ss_pred HHHhHHHHHH
Q 027720 189 FQNMKIKLIV 198 (219)
Q Consensus 189 ~~~~k~~iii 198 (219)
|...++--++
T Consensus 14 Y~tLRigGLi 23 (67)
T 2jp3_A 14 WESLQLGGLI 23 (67)
T ss_dssp GHHHHHHHHH
T ss_pred hHHheecchh
Confidence 3344443333
No 82
>2kfe_A Meucin-24; alpha-helix, antimicrobial protein; NMR {Synthetic}
Probab=24.14 E-value=47 Score=16.48 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=12.6
Q ss_pred HHHHHHHHhhhhhhhchhc
Q 027720 130 KLAKVKAQVSEVKGVMMDN 148 (219)
Q Consensus 130 kl~~i~~~v~~vk~im~~n 148 (219)
-+.++++.+.++++-|...
T Consensus 6 i~~kiK~kl~~akdK~k~~ 24 (26)
T 2kfe_A 6 FMSNLKEKLSGVKEKMKNS 24 (26)
T ss_dssp HHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHcc
Confidence 4566777777777776543
No 83
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=24.06 E-value=43 Score=26.59 Aligned_cols=41 Identities=24% Similarity=0.355 Sum_probs=30.4
Q ss_pred hHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhH
Q 027720 129 SKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENL 169 (219)
Q Consensus 129 dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L 169 (219)
..+.+++..+.++.+++.+=-.-|.+-|+-|+.++...++-
T Consensus 200 ~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a 240 (267)
T 1dn1_B 200 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHA 240 (267)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45677778888888887765566778888888887766653
No 84
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=22.95 E-value=2.8e+02 Score=21.88 Aligned_cols=37 Identities=3% Similarity=-0.024 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhhhCCCCCcccccccchhhhhHHHHHhhhhh
Q 027720 79 IAFLERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQYC 121 (219)
Q Consensus 79 f~fL~~i~~~f~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~ 121 (219)
-.|+.++...+.... ....|+.| .-++..|...+..+
T Consensus 103 ~~f~~~l~~~l~~~~-----~~~lPFEf-raLEa~L~~v~~~L 139 (261)
T 3rkg_A 103 SVLMYDLESKLSSTK-----NNSQFYEH-RALESIFINVMSAL 139 (261)
T ss_dssp HHHHHHHHHHHHCSS-----CCSSCHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-----CCCCChHH-HHHHHHHHHHHHHH
Confidence 358888887765421 22445555 33444555544444
No 85
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=21.46 E-value=4.2e+02 Score=23.35 Aligned_cols=17 Identities=12% Similarity=0.413 Sum_probs=10.0
Q ss_pred eEEEEEEeCCEEEEEEe
Q 027720 53 HTFNYLVDDGFTYCVVA 69 (219)
Q Consensus 53 ~~~~~l~~~~~~~~~v~ 69 (219)
..+-|+.++++-+.|=+
T Consensus 31 ~~WPfCaDeDwGvkCPS 47 (562)
T 3ghg_A 31 SDWPFCSDEDWNYKCPS 47 (562)
T ss_dssp CCCCBCCSSSBTTEEEC
T ss_pred CCCCcccccccCCCCCc
Confidence 34555666666666654
No 86
>1bm4_A Protein (moloney murine leukemia virus capsid); moloney murine leukemia virus capsid protein, momlv, MU-MLV, MHR, major homology region; NMR {Synthetic} SCOP: j.47.1.1
Probab=20.41 E-value=1.1e+02 Score=16.03 Aligned_cols=18 Identities=44% Similarity=0.752 Sum_probs=14.5
Q ss_pred ChhhHHHHHHHHHHHHHh
Q 027720 74 GRQVPIAFLERVKEDFIK 91 (219)
Q Consensus 74 ~~~~af~fL~~i~~~f~~ 91 (219)
+...+..||+.+...|+.
T Consensus 11 ~~EsPs~FlerL~eayR~ 28 (32)
T 1bm4_A 11 PNESPSAFLERLKEAYRR 28 (32)
T ss_dssp GGGHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHh
Confidence 445688999999998874
Done!