Query 027720
Match_columns 219
No_of_seqs 139 out of 1010
Neff 8.7
Searched_HMMs 13730
Date Tue Mar 26 00:17:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027720.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027720hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ifqa_ d.110.4.1 (A:) Sec22b 99.9 2.8E-26 2.1E-30 166.7 16.3 116 5-121 1-126 (127)
2 d1ioua_ d.110.4.1 (A:) Synapto 99.7 2.3E-18 1.7E-22 126.8 9.7 123 4-129 1-139 (140)
3 d2fh5a1 d.110.4.4 (A:1-129) Si 97.7 5.5E-05 4E-09 53.2 7.3 86 7-94 4-95 (129)
4 d2vglm2 d.110.4.2 (M:1-141) Mu 95.3 0.12 9E-06 35.6 10.6 49 46-94 46-94 (141)
5 d2vgls_ d.110.4.2 (S:) Sigma2 94.9 0.17 1.2E-05 35.1 10.4 89 5-94 1-96 (142)
6 d2j3wa1 d.110.4.3 (A:1-140) Se 84.1 4.6 0.00033 27.4 12.0 115 4-121 3-137 (140)
7 d1utga_ a.101.1.1 (A:) Uterogl 60.7 4.3 0.00031 24.1 3.3 40 116-155 23-62 (70)
8 d1ccda_ a.101.1.1 (A:) Clara c 53.8 6.4 0.00047 23.8 3.3 40 116-155 25-64 (77)
9 d1t1ua2 c.43.1.3 (A:402-616) C 33.2 54 0.004 23.3 6.4 41 51-91 167-208 (215)
10 d2axtt1 f.23.34.1 (T:1-30) Pho 32.8 23 0.0017 16.4 3.4 19 192-210 4-22 (30)
11 d1xl7a2 c.43.1.3 (A:393-610) P 28.9 76 0.0055 22.5 6.6 41 51-91 169-210 (218)
12 d1u00a1 a.8.4.1 (A:504-615) Ch 25.9 72 0.0052 19.9 6.4 41 129-178 54-94 (112)
13 d1xmec1 f.23.9.1 (C:2-34) Bact 25.8 35 0.0025 16.2 2.9 8 204-211 16-23 (33)
14 d1nm8a2 c.43.1.3 (A:386-599) C 24.3 97 0.0071 21.8 6.4 40 51-90 166-206 (214)
15 d1skye1 a.69.1.1 (E:357-470) F 23.9 34 0.0025 22.0 3.2 38 148-185 13-52 (114)
16 d1ix9a1 a.2.11.1 (A:1-90) Mn s 23.7 61 0.0044 19.6 4.4 81 102-193 7-89 (90)
17 d2jdid1 a.69.1.1 (D:358-475) F 23.5 51 0.0037 21.2 4.1 38 149-186 17-56 (118)
18 d1my6a1 a.2.11.1 (A:1-88) Fe s 23.5 26 0.0019 21.3 2.5 77 103-193 8-87 (88)
19 d3bi1a1 a.48.2.1 (A:594-750) G 22.3 89 0.0065 20.5 5.6 25 155-179 32-56 (157)
20 d1idsa1 a.2.11.1 (A:2-85) Fe s 22.2 52 0.0038 19.7 3.8 16 178-193 68-83 (84)
21 d1kkca1 a.2.11.1 (A:14-97) Mn 22.0 58 0.0042 19.4 4.0 15 178-192 68-82 (84)
22 d1dkza1 a.8.4.1 (A:507-603) Dn 21.3 63 0.0046 19.5 4.3 42 129-179 54-95 (97)
No 1
>d1ifqa_ d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.94 E-value=2.8e-26 Score=166.70 Aligned_cols=116 Identities=20% Similarity=0.372 Sum_probs=101.7
Q ss_pred ceEEEEEEeCC--eeEEeecCCCCC-------HHHHHHHHHhcCCCC-CCeeEEEECCeEEEEEEeCCEEEEEEecCCcC
Q 027720 5 SLIYSFVARGT--VILAEYTEFTGN-------FTGIAAQCLQKLPSS-NNKFTYNCDGHTFNYLVDDGFTYCVVAVESVG 74 (219)
Q Consensus 5 ~i~Ya~Iar~~--~iLae~~~~~~~-------~~~~a~~il~~i~~~-~~k~~~~~~~~~~~~l~~~~~~~~~v~d~~~~ 74 (219)
+|+|++|||+. .||||+++.+++ +..+|+.++++++|+ +++.+++.++|.|||+.++|++|+|+||++||
T Consensus 1 sil~t~IaR~~DgL~L~~s~~~~~~~~~~~~~~k~qak~ll~kl~~~~~~r~s~~~~~y~fHy~~~~gi~yl~i~d~~~~ 80 (127)
T d1ifqa_ 1 SVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFP 80 (127)
T ss_dssp CCCEEEEEETTTCCEEEEECCCTTCCHHHHHHHHHHHHHHHTTCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTSC
T ss_pred CeEEEEEEEecCCcEEEEEeccccccchhHHHHHHHHHHHHHhCCCCCCCcEEEEECCEEEEEEecCCeEEEEEEccccC
Confidence 58999999974 799999876653 345788999999876 68999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhhhCCCCCcccccccchhhhhHHHHHhhhhh
Q 027720 75 RQVPIAFLERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQYC 121 (219)
Q Consensus 75 ~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~ 121 (219)
+++||.||++|+++|.+.|+........||+| .+|+..|++.++.|
T Consensus 81 ~~laF~fLeei~~eF~~~y~~~i~~~~rpy~F-i~Fd~~iqk~k~~y 126 (127)
T d1ifqa_ 81 KKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSF-IEFDTFIQKTKKLY 126 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTTCCSTTTT-GGGHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhhhhhhhcccCCcch-HHHHHHHHHHHHhc
Confidence 99999999999999999996433334579999 78999999998876
No 2
>d1ioua_ d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.75 E-value=2.3e-18 Score=126.76 Aligned_cols=123 Identities=11% Similarity=0.132 Sum_probs=93.3
Q ss_pred cceEEEEEEeC----CeeEEeecCCC-------C---C-HHHHHHHHHhcCCCCCCeeEEEECCeEEE-EEEeCCEEEEE
Q 027720 4 QSLIYSFVARG----TVILAEYTEFT-------G---N-FTGIAAQCLQKLPSSNNKFTYNCDGHTFN-YLVDDGFTYCV 67 (219)
Q Consensus 4 ~~i~Ya~Iar~----~~iLae~~~~~-------~---~-~~~~a~~il~~i~~~~~k~~~~~~~~~~~-~l~~~~~~~~~ 67 (219)
|.|++..|.+. ..+|+...+.+ + + +.-+++.++++++++ +|.+++.++|.+| |+.++|++|+|
T Consensus 1 Mkl~~~~v~~~~~~~~~~L~~a~Dlssf~ffqR~svkE~~~f~sr~i~~Rt~~g-~r~sv~~~~y~~h~yv~~~gl~~l~ 79 (140)
T d1ioua_ 1 MRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAG-ERQSIEEGNYIGHVYARSEGICGVL 79 (140)
T ss_dssp CCCCEEEEEEEETTEEEEEEEEECCSSCCTTHHHHHHHHHHHHHHHHHHHCCSS-SEEEEEETTEEEEEECCSSSCEEEE
T ss_pred CeEEEEEEEEcCCCCcEEEeeeccccccceeehHhHHHHHHHHHHHHhhcCCCC-ceEEEEcCCeEEEEEEeeCCEEEEE
Confidence 45677777773 25677655533 1 1 234789999999997 5899999999999 67789999999
Q ss_pred EecCCcChhhHHHHHHHHHHHHHhhhCCCCCcccccccchhhhhHHHHHhhhhhcCCchhhh
Q 027720 68 VAVESVGRQVPIAFLERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEIS 129 (219)
Q Consensus 68 v~d~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~d 129 (219)
+||.+||+++||.||+++.++|.+.++...|.+.... .+..+-+.|+++|++| +||.+.|
T Consensus 80 i~d~~Yp~r~AF~~L~~i~~eF~~~~~~~~~~~i~~~-~~~~~~~~l~~~l~kY-QdP~~aD 139 (140)
T d1ioua_ 80 ITDKQYPVRPAYTLLNKILDEYLVAHPKEEWADVTET-NDALKMKQLDTYISKY-QDPSQAD 139 (140)
T ss_dssp EBCTTSCHHHHHHHHHHHHHHHHHSSCHHHHTTCSCC-CTTTSCHHHHHHHHHT-TSSCGGG
T ss_pred EECCCcchHHHHHHHHHHHHHHHHHcChHhhhhhhcc-ccccchHHHHHHHHHh-Cchhhcc
Confidence 9999999999999999999999999965444332211 1122347899999889 7898766
No 3
>d2fh5a1 d.110.4.4 (A:1-129) Signal recognition particle receptor alpha subunit, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.71 E-value=5.5e-05 Score=53.17 Aligned_cols=86 Identities=12% Similarity=0.277 Sum_probs=62.3
Q ss_pred EEEEEEeCCeeEEeecCCCCC----HHHHHHHHHhcCCCCCCeeEEEECCeEEEEEEeC--CEEEEEEecCCcChhhHHH
Q 027720 7 IYSFVARGTVILAEYTEFTGN----FTGIAAQCLQKLPSSNNKFTYNCDGHTFNYLVDD--GFTYCVVAVESVGRQVPIA 80 (219)
Q Consensus 7 ~Ya~Iar~~~iLae~~~~~~~----~~~~a~~il~~i~~~~~k~~~~~~~~~~~~l~~~--~~~~~~v~d~~~~~~~af~ 80 (219)
.++.+.+|+.||=.|.....+ ...+++.++=.=..+ ..+++.|+|...+..++ +++|+++-..-.+-..+=.
T Consensus 4 ~f~IftkGGiVLW~~~~~~~~~~~~IN~LI~~vlLEER~~--~~~~~~d~y~lkw~~~Ne~~lvfV~vYQ~il~l~yvd~ 81 (129)
T d2fh5a1 4 FFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGG--NNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTYVDK 81 (129)
T ss_dssp EEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC---------CCCCCEEEEEEETTTTEEEEEEESCGGGHHHHHH
T ss_pred EEEEEeCCeEEEEeecCCCcccchhHHHHHHHhheecccC--CCceeECCEEEEEEEeccCCEEEEEEEhhhhchHHHHH
Confidence 567889999999987543333 455665555332222 24588899999998876 6899999888888888889
Q ss_pred HHHHHHHHHHhhhC
Q 027720 81 FLERVKEDFIKRYG 94 (219)
Q Consensus 81 fL~~i~~~f~~~~~ 94 (219)
||++++..|...|+
T Consensus 82 lL~~i~~~F~~~y~ 95 (129)
T d2fh5a1 82 LIDDVHRLFRDKYR 95 (129)
T ss_dssp HHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999884
No 4
>d2vglm2 d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat assembly protein AP50) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=95.27 E-value=0.12 Score=35.65 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=44.2
Q ss_pred eEEEECCeEEEEEEeCCEEEEEEecCCcChhhHHHHHHHHHHHHHhhhC
Q 027720 46 FTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFIKRYG 94 (219)
Q Consensus 46 ~~~~~~~~~~~~l~~~~~~~~~v~d~~~~~~~af~fL~~i~~~f~~~~~ 94 (219)
-.+..++..|.|...+++.++++++.+.+.-.++.||..+.+.+..-++
T Consensus 46 pi~~~~~~~~~~~~~~~l~~v~v~~~~~n~l~~~e~L~~~~~~l~~y~~ 94 (141)
T d2vglm2 46 PVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFG 94 (141)
T ss_dssp SEEEETTEEEEEEEETTEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CeEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3678899999999999999999999999999999999999999877663
No 5
>d2vgls_ d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assembly protein AP17) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=94.94 E-value=0.17 Score=35.12 Aligned_cols=89 Identities=10% Similarity=0.172 Sum_probs=59.5
Q ss_pred ceEEEEEEe--CCeeEEe-ecCCCC-CHHHHHHHHH---hcCCCCCCeeEEEECCeEEEEEEeCCEEEEEEecCCcChhh
Q 027720 5 SLIYSFVAR--GTVILAE-YTEFTG-NFTGIAAQCL---QKLPSSNNKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQV 77 (219)
Q Consensus 5 ~i~Ya~Iar--~~~iLae-~~~~~~-~~~~~a~~il---~~i~~~~~k~~~~~~~~~~~~l~~~~~~~~~v~d~~~~~~~ 77 (219)
||..-+|.. |.++|+- |...+. .-......+. .+.++. .--.++.+++.|.|...+++.++++++.+.+.-.
T Consensus 1 MI~~i~i~n~~G~~~l~K~Y~~~~~~~~~~~~~~~~~~i~~~~~~-~~~i~~~~~~~~vy~~~~~l~~v~~~~~~~n~l~ 79 (142)
T d2vgls_ 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAK-HTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLA 79 (142)
T ss_dssp CEEEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHHHHHHTCCTT-SCSEEEETTEEEEEEEETTEEEEEEECTTSCHHH
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCC-CCceEEECCEEEEEEEECCEEEEEEECCCccHHH
Confidence 455555555 3456665 543221 1222333333 232222 1226788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhC
Q 027720 78 PIAFLERVKEDFIKRYG 94 (219)
Q Consensus 78 af~fL~~i~~~f~~~~~ 94 (219)
.+.||..+.+.+..-++
T Consensus 80 ~~e~L~~~~~~l~~~~~ 96 (142)
T d2vgls_ 80 YLEAIHNFVEVLNEYFH 96 (142)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999998877663
No 6
>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=84.13 E-value=4.6 Score=27.40 Aligned_cols=115 Identities=11% Similarity=0.010 Sum_probs=67.8
Q ss_pred cceEEEEEEeCCeeEE--eecCCCC-----C-------HHHHHHHHHhcCCCCCC----eeEEEECCeEEEEEE-eCCEE
Q 027720 4 QSLIYSFVARGTVILA--EYTEFTG-----N-------FTGIAAQCLQKLPSSNN----KFTYNCDGHTFNYLV-DDGFT 64 (219)
Q Consensus 4 ~~i~Ya~Iar~~~iLa--e~~~~~~-----~-------~~~~a~~il~~i~~~~~----k~~~~~~~~~~~~l~-~~~~~ 64 (219)
++..++.|.|++.+|- |++.... + +--.+..++++..+.++ +...+.+++..|+.. ..|+=
T Consensus 3 ~~y~f~IIg~~~~pLY~~ef~~~~~~~~~~~~~~~~~fi~hssLDive~~~~~~~~~~l~~l~~~~~~~v~~y~T~tg~K 82 (140)
T d2j3wa1 3 GSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMR 82 (140)
T ss_dssp CCEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTCCE
T ss_pred cEEEEEEEcCCCCeeEEEecCCcccccccchHHHHHHHHHHHHHHHHHHhcccCCCccceeEEecCCEEEEEEEcCCCcE
Confidence 5677888999888875 5543221 1 01123445555443321 234456788766654 67899
Q ss_pred EEEEecCCcChhhHHHHHHHHHHHHHhhhCCCCCcc-cccccchhhhhHHHHHhhhhh
Q 027720 65 YCVVAVESVGRQVPIAFLERVKEDFIKRYGGGKAAT-AVANGLNKEFGPKLKEHMQYC 121 (219)
Q Consensus 65 ~~~v~d~~~~~~~af~fL~~i~~~f~~~~~~~~~~~-~~~~~~~~~f~~~l~~~~~~~ 121 (219)
|+.++|+.-+. ..-.|++++.+.|..... +..-. ..|-. ...|+..++++.++|
T Consensus 83 fvl~td~~~~~-~i~~~~~~v~~lYv~~v~-NPfy~~~~pI~-s~~Fd~~v~~~~~~~ 137 (140)
T d2j3wa1 83 FIMLHDVRQED-GIKNFFTDVYDLYIKFAM-NPFYEPNSPIR-SSAFDRKVQFLGKKH 137 (140)
T ss_dssp EEEEESSCCHH-HHHHHHHHHHHHHHHHHH-STTCCTTCCCC-CHHHHHHHHHHHHHH
T ss_pred EEEEeCCCcch-HHHHHHHHHHHHHHHHhh-CccCCCCCccc-CHHHHHHHHHHHHHH
Confidence 99999876543 346788888888765432 21111 11111 257888888887766
No 7
>d1utga_ a.101.1.1 (A:) Uteroglobin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=60.71 E-value=4.3 Score=24.14 Aligned_cols=40 Identities=10% Similarity=0.086 Sum_probs=28.7
Q ss_pred HhhhhhcCCchhhhHHHHHHHHhhhhhhhchhcHHHHHhh
Q 027720 116 EHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDR 155 (219)
Q Consensus 116 ~~~~~~~~~~~~~dkl~~i~~~v~~vk~im~~ni~~~l~R 155 (219)
..++.|+.||.-.+...++++-+|...+.=++|+-+++++
T Consensus 23 ~~vk~y~~~~~~le~~~~lK~cvDtLt~edK~~i~~liek 62 (70)
T d1utga_ 23 TSLKEFEPDDTMKDAGMQMKKVLDSLPQTTRENIMKLTEK 62 (70)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3456787888777788888888887766666677666643
No 8
>d1ccda_ a.101.1.1 (A:) Clara cell 17kDa protein {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=53.75 E-value=6.4 Score=23.78 Aligned_cols=40 Identities=13% Similarity=0.050 Sum_probs=28.6
Q ss_pred HhhhhhcCCchhhhHHHHHHHHhhhhhhhchhcHHHHHhh
Q 027720 116 EHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDR 155 (219)
Q Consensus 116 ~~~~~~~~~~~~~dkl~~i~~~v~~vk~im~~ni~~~l~R 155 (219)
..++.|+.||.-.+...++++=++.....=+.|+-+++++
T Consensus 25 ~~vk~y~~d~~~lea~~~LK~cVDtLteedK~~i~~liek 64 (77)
T d1ccda_ 25 AALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 64 (77)
T ss_dssp HHHTTTCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHhcCCHhhHHHHHHHHHH
Confidence 4457787888777788888888887666666677666653
No 9
>d1t1ua2 c.43.1.3 (A:402-616) Choline O-acetyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=33.18 E-value=54 Score=23.31 Aligned_cols=41 Identities=20% Similarity=0.436 Sum_probs=31.1
Q ss_pred CCeEEEEEEe-CCEEEEEEecCCcChhhHHHHHHHHHHHHHh
Q 027720 51 DGHTFNYLVD-DGFTYCVVAVESVGRQVPIAFLERVKEDFIK 91 (219)
Q Consensus 51 ~~~~~~~l~~-~~~~~~~v~d~~~~~~~af~fL~~i~~~f~~ 91 (219)
|||-.+|.+. |.+.|.+-+-.+.|.+.+-.|.+.|.+.+..
T Consensus 167 dGyGi~Y~i~~d~i~f~iss~~s~~~t~~~~f~~~L~~al~~ 208 (215)
T d1t1ua2 167 NGYGACYNPQPEAITFCISSFHSCKETSSVEFAEAVGASLVD 208 (215)
T ss_dssp TCEEEEEEECSSCEEEEEEEETTSTTCCHHHHHHHHHHHHHH
T ss_pred CceEEEEEecCCEEEEEEEeCCCCcccCHHHHHHHHHHHHHH
Confidence 6888889775 5677766667888888888888888776543
No 10
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=32.78 E-value=23 Score=16.43 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 027720 192 MKIKLIVLGIIIALILIIV 210 (219)
Q Consensus 192 ~k~~iii~~vv~~~~~~i~ 210 (219)
..+.+|.++++.++.+.|+
T Consensus 4 i~yv~ifac~i~lfffaif 22 (30)
T d2axtt1 4 ITYVFIFACIIALFFFAIF 22 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHH
Confidence 4456666776666666554
No 11
>d1xl7a2 c.43.1.3 (A:393-610) Peroxisomal carnitine O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.88 E-value=76 Score=22.53 Aligned_cols=41 Identities=15% Similarity=0.162 Sum_probs=29.1
Q ss_pred CCeEEEEEEeCCEEEEEEe-cCCcChhhHHHHHHHHHHHHHh
Q 027720 51 DGHTFNYLVDDGFTYCVVA-VESVGRQVPIAFLERVKEDFIK 91 (219)
Q Consensus 51 ~~~~~~~l~~~~~~~~~v~-d~~~~~~~af~fL~~i~~~f~~ 91 (219)
|||-.+|.+.++-+.++|+ -.+.|.+.+-.|.+.|.+.+..
T Consensus 169 dGyGi~Y~i~~d~i~~~vss~~s~~~t~~~~f~~~L~~al~d 210 (218)
T d1xl7a2 169 NGYGFFYHIRDDRFVVACSSWRSCPETDAEKLVQMIFHAFHD 210 (218)
T ss_dssp TCEEEEEEEETTEEEEEEEEETTCTTCCHHHHHHHHHHHHHH
T ss_pred CeeEEEEEecCCEEEEEEEecCCCCccCHHHHHHHHHHHHHH
Confidence 7888889776554455555 5788888888888877766543
No 12
>d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]}
Probab=25.94 E-value=72 Score=19.87 Aligned_cols=41 Identities=15% Similarity=0.308 Sum_probs=30.5
Q ss_pred hHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHH
Q 027720 129 SKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQ 178 (219)
Q Consensus 129 dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~ 178 (219)
+....++..+++++..+.. +..+.+....+.|...+..|..
T Consensus 54 ~e~~~i~~~i~~l~~~l~~---------~d~~~I~~~~~~L~~~~~~~a~ 94 (112)
T d1u00a1 54 AERQVIDDAAAHLSEVAQG---------DDVDAIEQAIKNVDKQTQDFAA 94 (112)
T ss_dssp HHHHHHHHHHHHHHHHTTS---------SCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888887777653 3567888888889888887754
No 13
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=25.84 E-value=35 Score=16.22 Aligned_cols=8 Identities=38% Similarity=0.459 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 027720 204 ALILIIVL 211 (219)
Q Consensus 204 ~~~~~i~~ 211 (219)
+.+++.|+
T Consensus 16 l~ilvfw~ 23 (33)
T d1xmec1 16 LTILVFWL 23 (33)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444444
No 14
>d1nm8a2 c.43.1.3 (A:386-599) Carnitine acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.27 E-value=97 Score=21.83 Aligned_cols=40 Identities=13% Similarity=0.187 Sum_probs=28.2
Q ss_pred CCeEEEEEEe-CCEEEEEEecCCcChhhHHHHHHHHHHHHH
Q 027720 51 DGHTFNYLVD-DGFTYCVVAVESVGRQVPIAFLERVKEDFI 90 (219)
Q Consensus 51 ~~~~~~~l~~-~~~~~~~v~d~~~~~~~af~fL~~i~~~f~ 90 (219)
|||-.+|.+. +.+.|.+-+..+.|.+.+-.|.+.|.+.+.
T Consensus 166 dGyGi~Y~i~~~~i~f~iss~~~~~~t~~~~f~~~L~~al~ 206 (214)
T d1nm8a2 166 DGYGVCYNPMEAHINFSLSAYNSCAETNAARLAHYLEKALL 206 (214)
T ss_dssp TCEEEEEEECSSCEEEEEEEETTSTTCCHHHHHHHHHHHHH
T ss_pred CeeEEEEEecCCEEEEEEEecCCCcccCHHHHHHHHHHHHH
Confidence 7898899875 556665556677777777777777766554
No 15
>d1skye1 a.69.1.1 (E:357-470) F1 ATP synthase beta subunit, domain 3 {Bacillus sp., strain ps3 [TaxId: 1409]}
Probab=23.85 E-value=34 Score=22.01 Aligned_cols=38 Identities=8% Similarity=0.279 Sum_probs=26.0
Q ss_pred cHHHHHhhhhhHHhhHH--hhhhHHHHHHHHHHhHHHHHH
Q 027720 148 NIEKVLDRGEKIELLVD--RTENLRSQAQDFRQQGTQMRR 185 (219)
Q Consensus 148 ni~~~l~Rge~le~L~~--ks~~L~~~s~~f~~~s~~l~~ 185 (219)
-+.++|+|-..|.++.. --+.|+..-+.-..+|+++.|
T Consensus 13 ~v~~~LqrYkeLqDIIaiLG~dELSeeDk~~V~RARklqr 52 (114)
T d1skye1 13 KVQQTLERYKELQDIIAILGMDELSDEDKLVVHRARRIQF 52 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCchhcCHHHHHHHHHHHHHHH
Confidence 44566777777776665 346777777777778888765
No 16
>d1ix9a1 a.2.11.1 (A:1-90) Mn superoxide dismutase (MnSOD) {Escherichia coli [TaxId: 562]}
Probab=23.72 E-value=61 Score=19.61 Aligned_cols=81 Identities=12% Similarity=0.318 Sum_probs=37.0
Q ss_pred ccccchhhhhHHHHH-hhh-hhcCCchhhhHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHHh
Q 027720 102 VANGLNKEFGPKLKE-HMQ-YCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQ 179 (219)
Q Consensus 102 ~~~~~~~~f~~~l~~-~~~-~~~~~~~~~dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~~ 179 (219)
.||+. ..++|.|.. .|+ +|..... .=+..+++-+++..+....+++.++.+-..+. .+....+..++..
T Consensus 7 LPY~y-~aLeP~Is~~Tm~~Hh~KHH~--~YV~~lN~~l~~~~~~~~~~l~~li~~~~~~~--~~~~~~l~nnagg---- 77 (90)
T d1ix9a1 7 LPYAY-DALEPHFDKQTMEIHHTKHHQ--TYVNNANAALESLPEFANLPVEELITKLDQLP--ADKKTVLRNNAGG---- 77 (90)
T ss_dssp CSSCT-TTTTTTSCHHHHHHHHHTHHH--HHHHHHHHHHTTCHHHHTSCHHHHTTCGGGSC--HHHHHHHHHHHHH----
T ss_pred CCCCc-cccccccCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhCCHHHHHHHHhhcc--HHHHHHHHHhhhh----
Confidence 35555 456777743 443 3322111 23444555555555554456655554432221 1112233333333
Q ss_pred HHHHHHHHHHHHhH
Q 027720 180 GTQMRRKMWFQNMK 193 (219)
Q Consensus 180 s~~l~~~~~~~~~k 193 (219)
-.+=..+|+..|
T Consensus 78 --~~NH~~fW~~mk 89 (90)
T d1ix9a1 78 --HANHSLFWKGLK 89 (90)
T ss_dssp --HHHHHHHHHTBC
T ss_pred --HhhHHHHHHHhc
Confidence 344447777654
No 17
>d2jdid1 a.69.1.1 (D:358-475) F1 ATP synthase beta subunit, domain 3 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=23.53 E-value=51 Score=21.25 Aligned_cols=38 Identities=11% Similarity=0.253 Sum_probs=25.2
Q ss_pred HHHHHhhhhhHHhhHH--hhhhHHHHHHHHHHhHHHHHHH
Q 027720 149 IEKVLDRGEKIELLVD--RTENLRSQAQDFRQQGTQMRRK 186 (219)
Q Consensus 149 i~~~l~Rge~le~L~~--ks~~L~~~s~~f~~~s~~l~~~ 186 (219)
+.++|+|-..|.++.. --+.|+..-+.-..+|+++.|-
T Consensus 17 V~~~LqrYkeLqdIIaiLG~dELSeeDk~~V~RARklqrf 56 (118)
T d2jdid1 17 VQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRF 56 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHcChhhcCHHHhHHHHHHHHHHHH
Confidence 4456666666666554 3467777777777788888764
No 18
>d1my6a1 a.2.11.1 (A:1-88) Fe superoxide dismutase (FeSOD) {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=23.53 E-value=26 Score=21.32 Aligned_cols=77 Identities=8% Similarity=0.141 Sum_probs=34.1
Q ss_pred cccchhhhhHH-H-HHhh-hhhcCCchhhhHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHHh
Q 027720 103 ANGLNKEFGPK-L-KEHM-QYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQ 179 (219)
Q Consensus 103 ~~~~~~~f~~~-l-~~~~-~~~~~~~~~~dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~~ 179 (219)
||+. ..++|. | .+.| -.|+..-. .=+.++++-+++. +.+...++.++.+- ..-..+...|...
T Consensus 8 pY~y-~aLeP~~Is~~tm~~Hh~kHH~--~YV~~lN~~~~~~-~~~~~~l~~ii~~~----------~~~~~~~~v~nna 73 (88)
T d1my6a1 8 PFDP-GALEPYGMSAKTLEFHYGKHHK--GYVDNLNKLTQDT-ELADKSLEDVIRTT----------YGDAAKVGIFNNA 73 (88)
T ss_dssp SSCT-TTTGGGTCCHHHHHHHHHTHHH--HHHHHHHHHHTTS-GGGGSCHHHHHHHH----------TTCTTCHHHHHHH
T ss_pred CCCc-ccCCccccCHHHHHHHHHHHHH--HHHHHHHHHhhhh-HHHhcCHHHHHHHH----------HHhHHHHHHHhcc
Confidence 4554 456775 6 3455 33322211 2334444444443 34445555555432 1111222233333
Q ss_pred HHHHHHHHHHHHhH
Q 027720 180 GTQMRRKMWFQNMK 193 (219)
Q Consensus 180 s~~l~~~~~~~~~k 193 (219)
+.-.+=..+|+..+
T Consensus 74 gg~~NH~~fW~~m~ 87 (88)
T d1my6a1 74 AQVWNHTFFWNSLK 87 (88)
T ss_dssp HHHHHHHHHHHTBC
T ss_pred hhHhhHHHHHhccC
Confidence 34445668888754
No 19
>d3bi1a1 a.48.2.1 (A:594-750) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.32 E-value=89 Score=20.54 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=15.7
Q ss_pred hhhhHHhhHHhhhhHHHHHHHHHHh
Q 027720 155 RGEKIELLVDRTENLRSQAQDFRQQ 179 (219)
Q Consensus 155 Rge~le~L~~ks~~L~~~s~~f~~~ 179 (219)
.+-.++.|.+-..++...|..|...
T Consensus 32 ~~~~~~~L~~a~~~f~~aa~~~~~~ 56 (157)
T d3bi1a1 32 YSVSFDSLFSAVKNFTEIASKFSER 56 (157)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666777666666554
No 20
>d1idsa1 a.2.11.1 (A:2-85) Fe superoxide dismutase (FeSOD) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=22.25 E-value=52 Score=19.65 Aligned_cols=16 Identities=13% Similarity=0.642 Sum_probs=9.0
Q ss_pred HhHHHHHHHHHHHHhH
Q 027720 178 QQGTQMRRKMWFQNMK 193 (219)
Q Consensus 178 ~~s~~l~~~~~~~~~k 193 (219)
..+...+=..+|+..+
T Consensus 68 N~gg~~NH~~fW~~m~ 83 (84)
T d1idsa1 68 NLAGHVNHTIWWKNLS 83 (84)
T ss_dssp HHHHHHHHHHHHHHBC
T ss_pred cchhHHHHHHHhcccC
Confidence 3344555567777653
No 21
>d1kkca1 a.2.11.1 (A:14-97) Mn superoxide dismutase (MnSOD) {Aspergillus fumigatus [TaxId: 5085]}
Probab=22.01 E-value=58 Score=19.42 Aligned_cols=15 Identities=13% Similarity=0.623 Sum_probs=8.3
Q ss_pred HhHHHHHHHHHHHHh
Q 027720 178 QQGTQMRRKMWFQNM 192 (219)
Q Consensus 178 ~~s~~l~~~~~~~~~ 192 (219)
..+...+=..+|+..
T Consensus 68 N~gg~~NH~~fW~~m 82 (84)
T d1kkca1 68 NGGGHINHSLFWKNL 82 (84)
T ss_dssp HHHHHHHHHHHHHTB
T ss_pred hcchhhhHHHHhccc
Confidence 344555555677654
No 22
>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
Probab=21.33 E-value=63 Score=19.54 Aligned_cols=42 Identities=10% Similarity=0.241 Sum_probs=27.1
Q ss_pred hHHHHHHHHhhhhhhhchhcHHHHHhhhhhHHhhHHhhhhHHHHHHHHHHh
Q 027720 129 SKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQ 179 (219)
Q Consensus 129 dkl~~i~~~v~~vk~im~~ni~~~l~Rge~le~L~~ks~~L~~~s~~f~~~ 179 (219)
+....++..+++++..+. ++..+.+....+.|...+..|...
T Consensus 54 ~~k~~i~~~i~~l~~~l~---------~~d~~~i~~~~~~L~~~~~~l~e~ 95 (97)
T d1dkza1 54 DDKTAIESALTALETALK---------GEDKAAIEAKMQELAQVSQKLMEI 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHHT---------SSCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHHHHHHHHh
Confidence 344566666666665553 345677777888888777777654
Done!