BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027721
(219 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255584434|ref|XP_002532948.1| RNA polymerase II transcription factor B subunit, putative [Ricinus
communis]
gi|223527277|gb|EEF29432.1| RNA polymerase II transcription factor B subunit, putative [Ricinus
communis]
Length = 266
Score = 298 bits (762), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 152/193 (78%), Positives = 171/193 (88%), Gaps = 1/193 (0%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
MAS PSKLYSDDVSLV+VLLDTNPFFW++SSL FSQFL+HVLAFLN+IL LNQLNQVVVI
Sbjct: 1 MASVPSKLYSDDVSLVMVLLDTNPFFWTTSSLPFSQFLSHVLAFLNSILLLNQLNQVVVI 60
Query: 61 ATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGK-QEPEGRIACS 119
A GYNSCDY+YDSS N S GR+P+L + LLQ LE+FM +DE+LGK +E + +IA S
Sbjct: 61 ANGYNSCDYIYDSSLVMNHSSDEGRIPALYSDLLQKLEDFMIRDEKLGKGEESKRKIASS 120
Query: 120 LLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDS 179
LLSGSLSMALCYIQR+FRSG LHPQPRILCLQGSPDGPEQYVA+MN+IFSAQRSMVPIDS
Sbjct: 121 LLSGSLSMALCYIQRIFRSGPLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRSMVPIDS 180
Query: 180 CYLGAQNSAFLQQ 192
CY+G NSAFLQQ
Sbjct: 181 CYVGGHNSAFLQQ 193
>gi|449470273|ref|XP_004152842.1| PREDICTED: general transcription factor IIH subunit 3-like [Cucumis
sativus]
Length = 295
Score = 296 bits (758), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 149/192 (77%), Positives = 170/192 (88%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
MASAPSKLY+DDVSL+VVLLDTNPFFWS+S+L FS+FL+HVLAFLN+IL LNQLN+VVVI
Sbjct: 1 MASAPSKLYADDVSLLVVLLDTNPFFWSTSALPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
Query: 61 ATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSL 120
TGY SC Y+Y+SSS N + +GRMP+LC LL+NLEEF+ DEQ K++P+G SL
Sbjct: 61 GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120
Query: 121 LSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180
LSGSLSMALCYIQ+VFRSG LHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC
Sbjct: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180
Query: 181 YLGAQNSAFLQQ 192
Y+G+ NSAFLQQ
Sbjct: 181 YIGSHNSAFLQQ 192
>gi|225459534|ref|XP_002284465.1| PREDICTED: general transcription factor IIH subunit 3 [Vitis
vinifera]
gi|302141830|emb|CBI19033.3| unnamed protein product [Vitis vinifera]
Length = 297
Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 147/193 (76%), Positives = 169/193 (87%), Gaps = 1/193 (0%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
MA PSKLYSDDVSL+VVLLDTNPFFWS++SL FS+FL+HVLAFLN+IL +NQLNQVVVI
Sbjct: 1 MAPVPSKLYSDDVSLLVVLLDTNPFFWSTASLPFSKFLSHVLAFLNSILLINQLNQVVVI 60
Query: 61 ATGYNSCDYVYDSSST-GNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACS 119
ATG NSC++++DSSS N ++ NGRMP+LC+ LLQ LEEF+ DE+L K+ I S
Sbjct: 61 ATGCNSCNFIFDSSSVPANPNLENGRMPALCSNLLQKLEEFVTGDEKLSKEVLAAGIGSS 120
Query: 120 LLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDS 179
LLSGSLSMALCYIQRVFR+G LHPQPRILCLQGSPDGPEQYVA+MNAIFSAQRSMVPIDS
Sbjct: 121 LLSGSLSMALCYIQRVFRTGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDS 180
Query: 180 CYLGAQNSAFLQQ 192
C +GAQ+SAFLQQ
Sbjct: 181 CVIGAQHSAFLQQ 193
>gi|357461529|ref|XP_003601046.1| General transcription factor IIH subunit [Medicago truncatula]
gi|355490094|gb|AES71297.1| General transcription factor IIH subunit [Medicago truncatula]
Length = 340
Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 136/191 (71%), Positives = 156/191 (81%), Gaps = 1/191 (0%)
Query: 3 SAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIAT 62
SAPSK Y+DDVSL+VV LDTNPFFWSS FS+FL+ VLAFLN+IL L QLNQVVVIAT
Sbjct: 4 SAPSKNYADDVSLLVVTLDTNPFFWSSFPFHFSEFLSQVLAFLNSILLLGQLNQVVVIAT 63
Query: 63 GYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGK-QEPEGRIACSLL 121
G NSC YVYDS+S N + NG MP++ + LL NL+EF+ KD+QL G I SLL
Sbjct: 64 GCNSCSYVYDSASDKNHASTNGTMPAIYSNLLHNLDEFVAKDQQLTTPHHKPGTIPSSLL 123
Query: 122 SGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCY 181
SG+LSMALCYIQR FRSG +HPQPRILCLQGS DGPEQYVAIMNAIFSAQRS+VP+DSC+
Sbjct: 124 SGALSMALCYIQRAFRSGPMHPQPRILCLQGSTDGPEQYVAIMNAIFSAQRSVVPVDSCF 183
Query: 182 LGAQNSAFLQQ 192
+G+ NSAFLQQ
Sbjct: 184 IGSNNSAFLQQ 194
>gi|18394597|ref|NP_564050.1| transcription initiation factor TFIIH subunit H3 [Arabidopsis
thaliana]
gi|21537277|gb|AAM61618.1| unknown [Arabidopsis thaliana]
gi|92856638|gb|ABE77412.1| At1g18340 [Arabidopsis thaliana]
gi|332191584|gb|AEE29705.1| transcription initiation factor TFIIH subunit H3 [Arabidopsis
thaliana]
Length = 301
Score = 269 bits (688), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 146/197 (74%), Positives = 168/197 (85%), Gaps = 6/197 (3%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
M + SK YSDDVSL+V+LLDTNP FWS++S++FSQFL+HVLAFLNA+L LNQLNQVVVI
Sbjct: 1 MPAIASKQYSDDVSLLVLLLDTNPLFWSTTSITFSQFLSHVLAFLNAVLGLNQLNQVVVI 60
Query: 61 ATGYNSCDYVYDSSSTGN----QSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQE-PEGR 115
ATGY+SCDY+YDSS T N +S G G MP++ +LL+ LEEF+ KDE+L K+E E R
Sbjct: 61 ATGYSSCDYIYDSSLTSNHGNFESNGTG-MPAIFGSLLKKLEEFVTKDEELSKEEVSEDR 119
Query: 116 IACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMV 175
I LLSGSLSMALCYIQRVFRSG LHPQPRILCLQGSPDGPEQYVA+MN+IFSAQR MV
Sbjct: 120 IPSCLLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMV 179
Query: 176 PIDSCYLGAQNSAFLQQ 192
PIDSCY+G QNSAFLQQ
Sbjct: 180 PIDSCYIGVQNSAFLQQ 196
>gi|297850232|ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arabidopsis lyrata subsp.
lyrata]
gi|297338839|gb|EFH69256.1| hypothetical protein ARALYDRAFT_472054 [Arabidopsis lyrata subsp.
lyrata]
Length = 301
Score = 268 bits (686), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 146/197 (74%), Positives = 168/197 (85%), Gaps = 6/197 (3%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
M S SK YSDDVSL+V+LLDTNP FWS++S++FSQFL+HVLAFLNA+L LNQLNQVVVI
Sbjct: 1 MPSVVSKQYSDDVSLLVLLLDTNPLFWSTTSITFSQFLSHVLAFLNAVLGLNQLNQVVVI 60
Query: 61 ATGYNSCDYVYDSSSTGN----QSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQE-PEGR 115
ATGY+SCDY+YDSS T N +S G G MP+L +LL+ LE+F+ KDE+L ++E E R
Sbjct: 61 ATGYSSCDYIYDSSLTSNHGNLESNGTG-MPALFGSLLKKLEDFVTKDEELSREEVSEDR 119
Query: 116 IACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMV 175
I LLSGSLSMALCYIQRVFRSG LHPQPRILCLQGSPDGPEQYVA+MN+IFSAQR MV
Sbjct: 120 IPSCLLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMV 179
Query: 176 PIDSCYLGAQNSAFLQQ 192
PIDSCY+G QNSAFLQQ
Sbjct: 180 PIDSCYIGVQNSAFLQQ 196
>gi|449527735|ref|XP_004170865.1| PREDICTED: general transcription factor IIH subunit 3-like [Cucumis
sativus]
Length = 187
Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 136/177 (76%), Positives = 155/177 (87%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
MASAPSKLY+DDVSL+VVLLDTNPFFWS+S+L FS+FL+HVLAFLN+IL LNQLN+VVVI
Sbjct: 1 MASAPSKLYADDVSLLVVLLDTNPFFWSTSALPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
Query: 61 ATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSL 120
TGY SC Y+Y+SSS N + +GRMP+LC LL+NLEEF+ DEQ K++P+G SL
Sbjct: 61 GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120
Query: 121 LSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPI 177
LSGSLSMALCYIQ+VFRSG LHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMV I
Sbjct: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVCI 177
>gi|224084866|ref|XP_002307429.1| predicted protein [Populus trichocarpa]
gi|222856878|gb|EEE94425.1| predicted protein [Populus trichocarpa]
Length = 289
Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 148/185 (80%), Positives = 165/185 (89%), Gaps = 2/185 (1%)
Query: 10 SDDVSLVVVLLDTNPFFWSS-SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
+DDVSLVVVLLDTNPFFW+ SSLSFSQFL+HVLAF+N+IL LNQLNQVVVIA+GYN+CD
Sbjct: 1 ADDVSLVVVLLDTNPFFWTPPSSLSFSQFLSHVLAFVNSILLLNQLNQVVVIASGYNTCD 60
Query: 69 YVYDSSSTGNQ-SVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSM 127
Y+YDSSS +Q +GRMPSL + LLQ LEEFM KDE+LGK++ + I SLLSGSLSM
Sbjct: 61 YIYDSSSDASQLGSEDGRMPSLYSNLLQKLEEFMIKDEKLGKEQSQRAIKSSLLSGSLSM 120
Query: 128 ALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNS 187
ALCYIQRVFRSG LHPQPRILCLQGSPDGPEQYVA+MNAIFSAQRSMVPIDSCY+GA NS
Sbjct: 121 ALCYIQRVFRSGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCYVGAHNS 180
Query: 188 AFLQQ 192
AFLQQ
Sbjct: 181 AFLQQ 185
>gi|356509424|ref|XP_003523449.1| PREDICTED: general transcription factor IIH subunit 3-like [Glycine
max]
Length = 294
Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 133/194 (68%), Positives = 151/194 (77%), Gaps = 2/194 (1%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
M SAPSKLY+DDVSL+VV LDTNPFFWS+ F++FL+ VLAFLN IL L QLNQV+VI
Sbjct: 1 MPSAPSKLYADDVSLLVVTLDTNPFFWSTFPFPFAEFLSQVLAFLNTILLLGQLNQVIVI 60
Query: 61 ATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQ--EPEGRIAC 118
ATG NSC YVYDS+S N G MP+L + LL NL+EF+ +D QL G +
Sbjct: 61 ATGCNSCGYVYDSTSDKNHGSTTGTMPALYSNLLHNLDEFLARDRQLDADASHAPGIVPS 120
Query: 119 SLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPID 178
SLLSGSLSMALCYIQR FRSG + PQPRILCLQG+ DGPEQYVAIMNAIFSAQ S VPID
Sbjct: 121 SLLSGSLSMALCYIQRAFRSGPMPPQPRILCLQGAADGPEQYVAIMNAIFSAQHSTVPID 180
Query: 179 SCYLGAQNSAFLQQ 192
SCY+G+ NSAFLQQ
Sbjct: 181 SCYIGSNNSAFLQQ 194
>gi|363806998|ref|NP_001242062.1| uncharacterized protein LOC100776751 [Glycine max]
gi|255647869|gb|ACU24393.1| unknown [Glycine max]
Length = 294
Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 130/194 (67%), Positives = 150/194 (77%), Gaps = 2/194 (1%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
M SA SKLY+DDVSL+VV LDTNPFFWS+ F++FL+ VLAFLN+IL L QLNQV+VI
Sbjct: 1 MPSASSKLYADDVSLLVVTLDTNPFFWSTFPFPFAEFLSQVLAFLNSILLLGQLNQVIVI 60
Query: 61 ATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPE--GRIAC 118
ATG NSC Y+YDS+S N G MP+L + LL NL+EF+ +D QL G +
Sbjct: 61 ATGCNSCGYIYDSTSDKNHGSTTGTMPALYSNLLHNLDEFLARDRQLDADAAHAPGTVPS 120
Query: 119 SLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPID 178
SLLSGSLSMALCYIQR FRSG + PQPRILCL+G DGPEQYVAIMNAIFSAQ S VPID
Sbjct: 121 SLLSGSLSMALCYIQRAFRSGPMPPQPRILCLRGVADGPEQYVAIMNAIFSAQHSTVPID 180
Query: 179 SCYLGAQNSAFLQQ 192
SCY+G+ NSAFLQQ
Sbjct: 181 SCYIGSNNSAFLQQ 194
>gi|294464556|gb|ADE77788.1| unknown [Picea sitchensis]
Length = 306
Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 126/207 (60%), Positives = 153/207 (73%), Gaps = 17/207 (8%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSS-------SSLSFSQFLTHVLAFLNAILTLNQ 53
MASA S DDVSLVVVLLDTNPFFW+S SSL+FSQFL HVLAF N++L L+Q
Sbjct: 6 MASAGSNPPQDDVSLVVVLLDTNPFFWASATSSGQASSLTFSQFLEHVLAFFNSLLLLHQ 65
Query: 54 LNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRM--------PSLCATLLQNLEEFMNKDE 105
+NQ+VVI TG NSC+++YDSS+T ++ + PS ++Q LE+F+ +D+
Sbjct: 66 MNQLVVIGTGTNSCEFIYDSSTTNSEYKKSKDTKCSQEFLTPS--TIIVQQLEDFVRRDQ 123
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMN 165
L + SLLSGSLSMALCYIQR+ R G HPQPRILCLQGSPDGP+QYVAIMN
Sbjct: 124 ALNTNNNATKNIHSLLSGSLSMALCYIQRIIRGGPSHPQPRILCLQGSPDGPQQYVAIMN 183
Query: 166 AIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
AIFSAQRSMVP+DSC +G+Q+SAFLQQ
Sbjct: 184 AIFSAQRSMVPVDSCIVGSQHSAFLQQ 210
>gi|357146071|ref|XP_003573866.1| PREDICTED: general transcription factor IIH subunit 3-like
[Brachypodium distachyon]
Length = 290
Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 122/197 (61%), Positives = 148/197 (75%), Gaps = 10/197 (5%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
M SA SKLYSDDVSLVVV++DTNPFFW+ ++L F+ F H++ F+N++L LN LNQVVVI
Sbjct: 1 MTSAHSKLYSDDVSLVVVIVDTNPFFWAGAALPFADFFGHLIHFVNSLLLLNHLNQVVVI 60
Query: 61 ATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQ---NLEEFMNKD--EQLGKQEPEGR 115
A G +SC YV+DS GN + P + AT + +EEF+ +D + G G
Sbjct: 61 AAGVSSCAYVFDS---GNAAASGS--PDVAATFAKASRKVEEFVKQDARDTAGNGTVAGG 115
Query: 116 IACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMV 175
A SL SG+LS+ALCYIQRVFRSG HPQPRILCLQGSPDGPEQYVA+MN+IFSAQRSMV
Sbjct: 116 GAASLFSGALSLALCYIQRVFRSGTRHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRSMV 175
Query: 176 PIDSCYLGAQNSAFLQQ 192
PIDSC +G Q+SAFLQQ
Sbjct: 176 PIDSCIVGTQDSAFLQQ 192
>gi|326513394|dbj|BAK06937.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 292
Score = 199 bits (505), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 114/194 (58%), Positives = 146/194 (75%), Gaps = 4/194 (2%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
M SA SKLYSDDVSLVVV++DTNPFFW+ ++L F+ FL+H++ F+N++L L+ LN VV+I
Sbjct: 1 MTSAHSKLYSDDVSLVVVVVDTNPFFWAGAALPFADFLSHLIHFVNSLLLLSNLNHVVII 60
Query: 61 ATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKD--EQLGKQEPEGRIAC 118
A G +SC YV+DS + G + G + + LEE + +D E +G A
Sbjct: 61 AAGVSSCAYVFDSGNAG--ASGTADVAETLGKASRKLEELIKQDARETVGNGTVADGGAA 118
Query: 119 SLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPID 178
SL SG+LS+ALCYIQR+FRSG HPQPRILC+QGSPDGPEQYVA+MN+IFSAQRSMVPID
Sbjct: 119 SLFSGALSLALCYIQRIFRSGSRHPQPRILCVQGSPDGPEQYVAVMNSIFSAQRSMVPID 178
Query: 179 SCYLGAQNSAFLQQ 192
+C +G Q+SAFLQQ
Sbjct: 179 TCIVGTQDSAFLQQ 192
>gi|212722318|ref|NP_001131186.1| uncharacterized protein LOC100192494 [Zea mays]
gi|194688300|gb|ACF78234.1| unknown [Zea mays]
gi|194690816|gb|ACF79492.1| unknown [Zea mays]
gi|224028537|gb|ACN33344.1| unknown [Zea mays]
gi|413926714|gb|AFW66646.1| hypothetical protein ZEAMMB73_940692 [Zea mays]
Length = 291
Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 115/194 (59%), Positives = 143/194 (73%), Gaps = 4/194 (2%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
M SA SKLYSDDVSLVVV++DTNPFFW++++L F+ F H++ F+N++L LN LN+VVVI
Sbjct: 1 MTSAHSKLYSDDVSLVVVVVDTNPFFWAAAALPFADFFAHLIHFVNSLLLLNHLNRVVVI 60
Query: 61 ATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQL--GKQEPEGRIAC 118
A G +SC Y+ DSS G + + EEF+ +D + G A
Sbjct: 61 AAGVSSCAYILDSSDASPS--GGVAVSDTFDKASRKAEEFIAQDARATAGNGSVASANAA 118
Query: 119 SLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPID 178
SLLSG+LS++LCYIQR+FRSG HPQPRILCLQGSPDGPEQYVA+MN+IFSAQRSMVPID
Sbjct: 119 SLLSGALSISLCYIQRIFRSGSRHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRSMVPID 178
Query: 179 SCYLGAQNSAFLQQ 192
SC +G Q+SAFLQQ
Sbjct: 179 SCIVGTQDSAFLQQ 192
>gi|223946567|gb|ACN27367.1| unknown [Zea mays]
gi|413926715|gb|AFW66647.1| hypothetical protein ZEAMMB73_940692 [Zea mays]
Length = 294
Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 114/197 (57%), Positives = 142/197 (72%), Gaps = 7/197 (3%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
M SA SKLYSDDVSLVVV++DTNPFFW++++L F+ F H++ F+N++L LN LN+VVVI
Sbjct: 1 MTSAHSKLYSDDVSLVVVVVDTNPFFWAAAALPFADFFAHLIHFVNSLLLLNHLNRVVVI 60
Query: 61 ATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQL--GKQEPEGRIAC 118
A G +SC Y+ DSS G + + EEF+ +D + G A
Sbjct: 61 AAGVSSCAYILDSSDASPS--GGVAVSDTFDKASRKAEEFIAQDARATAGNGSVASANAA 118
Query: 119 SLLSGSLSMALCY---IQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMV 175
SLLSG+LS++LC IQR+FRSG HPQPRILCLQGSPDGPEQYVA+MN+IFSAQRSMV
Sbjct: 119 SLLSGALSISLCCYLDIQRIFRSGSRHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRSMV 178
Query: 176 PIDSCYLGAQNSAFLQQ 192
PIDSC +G Q+SAFLQQ
Sbjct: 179 PIDSCIVGTQDSAFLQQ 195
>gi|115443937|ref|NP_001045748.1| Os02g0125800 [Oryza sativa Japonica Group]
gi|41053068|dbj|BAD08012.1| putative TFIIH basal transcription factor complex p34 subunit
[Oryza sativa Japonica Group]
gi|113535279|dbj|BAF07662.1| Os02g0125800 [Oryza sativa Japonica Group]
gi|215768495|dbj|BAH00724.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 289
Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 111/193 (57%), Positives = 143/193 (74%), Gaps = 8/193 (4%)
Query: 4 APSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
A SKLYSDDVSL VV++DTNP FW++++L F+ F H++ ++N++L LN LN VVVIA G
Sbjct: 2 ASSKLYSDDVSLAVVVVDTNPLFWATAALPFADFFAHLIHYVNSLLLLNHLNHVVVIAAG 61
Query: 64 YNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIA----CS 119
+SC Y++DSS + + + A + ++EF+ +D + G +A S
Sbjct: 62 LSSCTYIFDSSDASASGAAD--VAATFAKASRKMDEFIAEDAR--ATSSNGSVADGNAAS 117
Query: 120 LLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDS 179
LLSG+LS+ALCYIQRVFRSG HPQPRILCLQGSPDGPEQYVA+MN+IFSAQRSMVPIDS
Sbjct: 118 LLSGALSLALCYIQRVFRSGTRHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRSMVPIDS 177
Query: 180 CYLGAQNSAFLQQ 192
C +G Q+SAFLQQ
Sbjct: 178 CIVGTQDSAFLQQ 190
>gi|302759787|ref|XP_002963316.1| hypothetical protein SELMODRAFT_438480 [Selaginella moellendorffii]
gi|300168584|gb|EFJ35187.1| hypothetical protein SELMODRAFT_438480 [Selaginella moellendorffii]
Length = 916
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 85/175 (48%), Positives = 115/175 (65%), Gaps = 11/175 (6%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
MA AP DD SLVVVLLDT+ FW++ S S L VL+FLN++ +N +N +V+I
Sbjct: 706 MAGAPP---PDDSSLVVVLLDTSLHFWNAVVRS-SSGLQQVLSFLNSLALMNHMNHLVII 761
Query: 61 ATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSL 120
A+G NSC+++YDS + ++ N + S ++ L +F+++D Q P + SL
Sbjct: 762 ASGCNSCEFLYDSLDSDERAGANHQTAS--EKIVHKLNDFVSRD---ATQPP--KFQPSL 814
Query: 121 LSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMV 175
LS SLSMALCYIQR + + +PR+LCLQ SPD P QY+AIMNAIFSAQRSMV
Sbjct: 815 LSASLSMALCYIQRALKEKIGPSKPRMLCLQASPDAPHQYIAIMNAIFSAQRSMV 869
>gi|168000809|ref|XP_001753108.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695807|gb|EDQ82149.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 257
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 111/156 (71%), Gaps = 9/156 (5%)
Query: 44 FLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGN------QSVGNGRMP-SLCATLLQN 96
F+N IL LN N++V+IATG ++C ++YDS++T S N + S + ++
Sbjct: 2 FVNGILLLNHTNRIVIIATGSSTCAFLYDSTATDGINGSSVTSKANKKTQVSRTELITKS 61
Query: 97 LEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDG 156
++EF++K+E+ K+ + I S +SGSLSMALCYIQRV R L HPQ RILCLQGSPD
Sbjct: 62 MQEFVSKEEEASKESSQ--IQYSNISGSLSMALCYIQRVLRGPLPHPQARILCLQGSPDA 119
Query: 157 PEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
P QY+++MN+IFSAQR+ V ID+C +G+Q+SAFLQQ
Sbjct: 120 PYQYISVMNSIFSAQRNGVVIDACVVGSQHSAFLQQ 155
>gi|6714290|gb|AAF25986.1|AC013354_5 F15H18.15 [Arabidopsis thaliana]
Length = 590
Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 99/191 (51%), Positives = 128/191 (67%), Gaps = 27/191 (14%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHV--------LAFLNAILTLN 52
M + SK YSDDVSL+V+LLDTNP FWS++S++FSQFL+HV LAFLNA+L LN
Sbjct: 1 MPAIASKQYSDDVSLLVLLLDTNPLFWSTTSITFSQFLSHVSVSNESIVLAFLNAVLGLN 60
Query: 53 QLNQVVVIATGYNSCDYVYDSSSTGN----QSVGNGRMPSLCATLLQNLEEFMNKDEQLG 108
QLNQVVVIATGY+SCDY+YDSS T N +S G G MP++ +LL+ LEEF+ KDE+L
Sbjct: 61 QLNQVVVIATGYSSCDYIYDSSLTSNHGNFESNGTG-MPAIFGSLLKKLEEFVTKDEELS 119
Query: 109 KQE-PEGRI-ACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPD---GPEQYVAI 163
K+E E RI +C L G+ +C+ F + + + CL G +YVA+
Sbjct: 120 KEEVSEDRIPSCLLWPGT----VCFFLHFFSTCKI-----LSCLSGLIKRFCHSFRYVAV 170
Query: 164 MNAIFSAQRSM 174
MN+IFSAQR M
Sbjct: 171 MNSIFSAQRLM 181
>gi|384252816|gb|EIE26291.1| transcription factor Tfb4 [Coccomyxa subellipsoidea C-169]
Length = 305
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/207 (40%), Positives = 114/207 (55%), Gaps = 23/207 (11%)
Query: 4 APSKLYSDDVSLVVVLLDTNPFFWSS----------SSLSFSQFLTHVLAFLNAILTLNQ 53
APS DD L+VV+L+T+ WS+ +LS + L VL FLN L LN+
Sbjct: 2 APSD-EDDDSCLLVVVLETHEDLWSALADESESPVIGNLSLTTLLQQVLVFLNTFLALNE 60
Query: 54 LNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQE-- 111
N++VVIA + + +Y S S + G P A EE + K L +++
Sbjct: 61 ANELVVIAACGDQSEVLYTSPSVHRERQG----PKHGAVTGNASEEVLKKLHALLQEQAA 116
Query: 112 -PEGRIA-CSLLSGSLSMALCYIQRV----FRSGLLHPQPRILCLQGSPDGPEQYVAIMN 165
P G A ++L+G+LS ALC I + QPR+LCL+GSPD EQY+++MN
Sbjct: 117 LPVGDHARPAVLAGALSRALCLINKAQLASAGGSRTRKQPRLLCLKGSPDATEQYISVMN 176
Query: 166 AIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
AIF+AQR V ID+C LGA +SAFLQQ
Sbjct: 177 AIFAAQRCEVVIDACMLGASDSAFLQQ 203
>gi|330789994|ref|XP_003283083.1| hypothetical protein DICPUDRAFT_9126 [Dictyostelium purpureum]
gi|325086950|gb|EGC40332.1| hypothetical protein DICPUDRAFT_9126 [Dictyostelium purpureum]
Length = 282
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 112/201 (55%), Gaps = 28/201 (13%)
Query: 11 DDVSLVVVLLDTNPFFWSSSS-----------LSFSQFLTHVLAFLNAILTLNQLNQVVV 59
DD SL+V++LD N + W +SS + FS+FL HV+ F+NA L LNQ NQ+ +
Sbjct: 3 DDTSLLVIVLDCNIYSWGTSSPPLINTSKNNYIGFSKFLEHVMVFINAYLMLNQENQIAL 62
Query: 60 IATGYNSCDYVYDSS-----STGNQSVGNGRMPSLCATLLQNLEEF---MNKDEQLGKQE 111
I++ +++ + Q+ N + +L + +L+ L++ +N D+Q
Sbjct: 63 ISSKIGQSSFIFPETVEQLEQEETQTENNIQNITLQSQILKRLQKINIEVNNDQQ----- 117
Query: 112 PEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQ 171
I S S +LSMALCYI R+ R + +PRIL SPD QY+++MN IFSAQ
Sbjct: 118 ---DIINSSFSAALSMALCYINRI-RKESPNLKPRILVFNISPDVSSQYISVMNCIFSAQ 173
Query: 172 RSMVPIDSCYLGAQNSAFLQQ 192
+ +P+DSC L +S FLQQ
Sbjct: 174 KQSIPVDSCILSQTDSTFLQQ 194
>gi|308798981|ref|XP_003074271.1| basal transcription factor complex subunit-related (ISS)
[Ostreococcus tauri]
gi|116000442|emb|CAL50122.1| basal transcription factor complex subunit-related (ISS)
[Ostreococcus tauri]
Length = 319
Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 114/220 (51%), Gaps = 39/220 (17%)
Query: 10 SDDVSLVVVLLDTNPFFWSSS---------SLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
+DD SL++VL++TNP W +S S S L + FLNA LNQ N+ VV+
Sbjct: 10 TDDRSLLIVLVETNPRTWETSEGKGEGTPASRGLSSVLGATITFLNAFFALNQQNRAVVV 69
Query: 61 ATGYNSCDYVY------DSSSTGNQS--------VGNGRMP---SLCATLLQNLEEFMNK 103
A + C Y+Y ++ G+++ VG G P T+L+ L E +N
Sbjct: 70 AVHGDGCHYLYTSPLGVETDEDGDEAEDARWANKVG-GLDPLQSEAGPTILRRLGE-LNA 127
Query: 104 DE--------QLGKQEPEGRIACSLLSGSLSMALCYIQR---VFRSGLLHPQPRILCLQG 152
E + K + + A S +G+LS+ALCY R + + L +PRILCLQ
Sbjct: 128 AETGSSATGAKRDKADSDDGPATSPFAGALSLALCYCNRAQALENAAGLRSKPRILCLQA 187
Query: 153 SPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
S D P Y+ +MNAIFSAQR +P+D+ LG +S F+QQ
Sbjct: 188 SQDNPTDYIPMMNAIFSAQRQSIPVDAFALGEHDSPFMQQ 227
>gi|145340718|ref|XP_001415467.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575690|gb|ABO93759.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 285
Score = 113 bits (282), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 103/200 (51%), Gaps = 36/200 (18%)
Query: 10 SDDVSLVVVLLDTNPFFWSSS---------SLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
+DD SL+VVL++TNP +W++S + S L FLN+ LNQ N+ VI
Sbjct: 9 ADDKSLLVVLVETNPRYWAASEGKGDGTAAANGLSSVLEATTVFLNSFFALNQQNRAAVI 68
Query: 61 ATGYNSCDYVYDSS---STGNQSV-GNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRI 116
A + C Y+Y S + G+ S G+ + AT P R
Sbjct: 69 AVHDDGCHYLYTSPLELNAGDASASATGKKRTKTAT-------------------PSSRA 109
Query: 117 A-CSLLSGSLSMALCYIQR---VFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQR 172
A S +G+LS+ALCY R + + L +PRILCLQ S D P Y+++MNAIFSAQR
Sbjct: 110 AMSSPFAGALSLALCYCNRAQTLETAAGLRVRPRILCLQASQDNPTDYISMMNAIFSAQR 169
Query: 173 SMVPIDSCYLGAQNSAFLQQ 192
+PID+ LG + FLQQ
Sbjct: 170 QSIPIDAFALGEHDLPFLQQ 189
>gi|255545470|ref|XP_002513795.1| hypothetical protein RCOM_1031970 [Ricinus communis]
gi|223546881|gb|EEF48378.1| hypothetical protein RCOM_1031970 [Ricinus communis]
Length = 159
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 85/152 (55%), Gaps = 28/152 (18%)
Query: 41 VLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEF 100
VLAFLN+IL NQL+QV+VI +GYNSCDYVYDSS N+S +G++P+L + LLQ LE+F
Sbjct: 5 VLAFLNSILLFNQLSQVLVIGSGYNSCDYVYDSSLIANRSSEDGKIPTLYSELLQKLEDF 64
Query: 101 MNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQY 160
+ +DE+LGK E L +L + ++ LL P
Sbjct: 65 IIRDEKLGKGE-------EFLKETLPLHCSQDPCLWHFALLIP----------------- 100
Query: 161 VAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
+ + VPIDSCY+G NSAFLQQ
Sbjct: 101 ----DTMVRKNEGKVPIDSCYVGGHNSAFLQQ 128
>gi|218189967|gb|EEC72394.1| hypothetical protein OsI_05675 [Oryza sativa Indica Group]
gi|222622090|gb|EEE56222.1| hypothetical protein OsJ_05207 [Oryza sativa Japonica Group]
Length = 261
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 115/193 (59%), Gaps = 36/193 (18%)
Query: 4 APSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
A SKLYSDDVSL VV++DTNP FW++++L F+ F H++ ++N++L LN LN VVVIA G
Sbjct: 2 ASSKLYSDDVSLAVVVVDTNPLFWATAALPFADFFAHLIHYVNSLLLLNHLNHVVVIAAG 61
Query: 64 YNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIA----CS 119
+SC Y++DSS + + + A + ++EF+ +D + G +A S
Sbjct: 62 LSSCTYIFDSSDASASGAAD--VAATFAKASRKMDEFIAEDAR--ATSSNGSVADGNAAS 117
Query: 120 LLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDS 179
LLSG+LS+ALCYIQRVFRSG HPQPR VPIDS
Sbjct: 118 LLSGALSLALCYIQRVFRSGTRHPQPR----------------------------VPIDS 149
Query: 180 CYLGAQNSAFLQQ 192
C +G Q+SAFLQQ
Sbjct: 150 CIVGTQDSAFLQQ 162
>gi|303274264|ref|XP_003056454.1| RNA polymerase II transcription factor B subunit 4 [Micromonas
pusilla CCMP1545]
gi|226462538|gb|EEH59830.1| RNA polymerase II transcription factor B subunit 4 [Micromonas
pusilla CCMP1545]
Length = 296
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 102/197 (51%), Gaps = 19/197 (9%)
Query: 8 LYSDDVSLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
L SD S++V+L +TNP WS SF + L +L ++ L+L++ N+VV+IA
Sbjct: 22 LPSDGSSVLVILFETNPLLWSGLGGRLDGKESFDETLRQLLVYMIGFLSLHEQNRVVIIA 81
Query: 62 TGYN--SCDYVYDSSSTGNQSVGN-GRMPSLCATLLQNLEEF---MNKDEQLGKQEPEGR 115
N C Y + ++G + N G LCA ++ NL M D L +
Sbjct: 82 LHSNVEHCMYAIPTLASGENDLTNTGSKSDLCAQVISNLATLAMRMRSDFDLSTKSNMP- 140
Query: 116 IACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMV 175
L+ +SMALC + R R H PRILC+ GS D QY + MNAIFSA+ S V
Sbjct: 141 -----LTTVISMALCCVNRA-RVYKPHCSPRILCILGSQDSSGQYFSGMNAIFSAKNSGV 194
Query: 176 PIDSCYLGAQNSAFLQQ 192
ID+C LG +S FLQQ
Sbjct: 195 RIDACLLGYTDSFFLQQ 211
>gi|115609530|ref|XP_791329.2| PREDICTED: general transcription factor IIH subunit 3-like
[Strongylocentrotus purpuratus]
Length = 313
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 107/204 (52%), Gaps = 29/204 (14%)
Query: 14 SLVVVLLDTNPFFWSSSS--------LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
+LVV+++D NP +W S L+ SQ + V+ F+N+ L +++ N+V VIA+ N
Sbjct: 11 NLVVIVIDVNPVWWGKQSHHKQQKDGLALSQCMDAVVVFINSHLMMDRRNKVAVIASHTN 70
Query: 66 SCDYVY-----------DSSSTGNQSVGNGR---MPSLCATLLQNLEEFMNKDEQLGKQE 111
++Y D ++ +G+ S+ T+++ L+ +++ + G
Sbjct: 71 ESRFLYPKKTSDAFDDGDDQREQDEMSSDGKYEVFASINDTVMEELKNLVDESKSWGLSH 130
Query: 112 PEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFS 169
+ +LL+GSL+MALCYI RV + + + RIL L+ + D QY+ MN IF+
Sbjct: 131 TD-----TLLAGSLAMALCYIHRVXKECAVGEKIKSRILVLKAADDSASQYMNFMNVIFT 185
Query: 170 AQRSMVPIDSCYLGAQNSAFLQQC 193
AQ+ +PID+C L +S Q C
Sbjct: 186 AQKQNIPIDACILDKDSSLLQQAC 209
>gi|348676264|gb|EGZ16082.1| hypothetical protein PHYSODRAFT_508027 [Phytophthora sojae]
Length = 298
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 100/186 (53%), Gaps = 17/186 (9%)
Query: 15 LVVVLLDTNPFFW------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
L+V+++DTNP W ++ Q ++ L F+N+ L L++ N++V+IA
Sbjct: 21 LLVLVIDTNPVHWFAQGGSAADRAGLQQLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSA 80
Query: 69 YVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMA 128
+Y + + + + A ++Q L++ D L +P R A ++ SLS A
Sbjct: 81 MLYPDPEQDDTTGSAEQAARVNAGVMQRLQQL--SDAPLDPAKP-NRTA---IAASLSRA 134
Query: 129 LCYIQRVFRSGLLHP--QPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQN 186
LC+I R P +PRIL +Q SPD E Y+AIMN IFSAQ+ V +D+C L ++
Sbjct: 135 LCFINRAINE---EPDLRPRILVVQKSPDVSEHYIAIMNGIFSAQKKSVAVDACILANEH 191
Query: 187 SAFLQQ 192
S+F+QQ
Sbjct: 192 SSFMQQ 197
>gi|115655410|ref|XP_001194121.1| PREDICTED: general transcription factor IIH subunit 3-like
[Strongylocentrotus purpuratus]
Length = 391
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 101/201 (50%), Gaps = 25/201 (12%)
Query: 14 SLVVVLLDTNPFFWSSSS--------LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
+LVV+++D NP +W S L+ SQ + V+ F+N+ L +++ N+V VIA+ N
Sbjct: 91 NLVVIVIDVNPVWWGKQSHHKQQKDGLALSQCMDAVVVFINSHLMMDRRNKVAVIASHTN 150
Query: 66 SCDYVY-----------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEG 114
++Y D ++ +G+ + +EE N L + P
Sbjct: 151 ESRFLYPKKTSDAFDDGDDQREQDEMSSDGKYEVFASINDTVMEELKN----LVDENPTV 206
Query: 115 RIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFSAQR 172
+LL+GSL+MALCYI RV + + + RIL L+ + D QY+ MN IF+AQ+
Sbjct: 207 SHTDTLLAGSLAMALCYIHRVEKECAVGEKIKSRILVLKAADDSASQYMNFMNVIFTAQK 266
Query: 173 SMVPIDSCYLGAQNSAFLQQC 193
+PID+C L +S Q C
Sbjct: 267 QNIPIDACILDKDSSLLQQAC 287
>gi|301122235|ref|XP_002908844.1| general transcription factor IIH subunit, putative [Phytophthora
infestans T30-4]
gi|262099606|gb|EEY57658.1| general transcription factor IIH subunit, putative [Phytophthora
infestans T30-4]
Length = 293
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 98/186 (52%), Gaps = 17/186 (9%)
Query: 15 LVVVLLDTNPFFW------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
L+V+++DTNP W ++ Q ++ L F+N+ L L++ N++V+IA
Sbjct: 16 LLVLVIDTNPVHWFTNGGSAADRAGLQQLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSA 75
Query: 69 YVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMA 128
+Y + + + + A +LQ +++ D L P + ++ SLS +
Sbjct: 76 MLYPDPEQDDTTGSAEQAAKVNAGVLQRMQQL--SDAPLDPATPNQ----TAIAASLSRS 129
Query: 129 LCYIQRVFRSGLLHP--QPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQN 186
LC+I R P +PRIL +Q SPD E Y+AIMN IFSAQ+ V +D+C L ++
Sbjct: 130 LCFINRAINE---EPDLRPRILVIQKSPDVSEHYIAIMNGIFSAQKKSVAVDACILATEH 186
Query: 187 SAFLQQ 192
S+F+QQ
Sbjct: 187 SSFMQQ 192
>gi|290987006|ref|XP_002676214.1| predicted protein [Naegleria gruberi]
gi|284089815|gb|EFC43470.1| predicted protein [Naegleria gruberi]
Length = 346
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 110/240 (45%), Gaps = 57/240 (23%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSL--------------SFSQFLTHVLAFLNAILTLNQLN 55
+D++ L+V+LLD NP+ W L SFSQF+ +L F+N LT+ +
Sbjct: 11 TDELELLVILLDINPYTWGKRKLDNEQQQSSSAKSLISFSQFINQLLVFINTFLTIQRNK 70
Query: 56 QVVVIATGYNSCDYV-----YDSSSTGNQSVGNGRMPSLCATLLQNL---------EEFM 101
++ VIA+ N+ + + S G + ++ S +T + N+ E+F
Sbjct: 71 KIAVIASSENNKSHFLFPNRFRSKKDGKHNHNQIQVKSTDSTSMLNMMGVKSGDDIEDFF 130
Query: 102 NKD----------------------EQLGKQEPEGRIACSL-----LSGSLSMALCYIQR 134
D E E +G S LSG+LSMALC+I R
Sbjct: 131 LNDIGFESVQNAVLSGLNSEEVTPSEDTEYMEDDGNHTTSTAQGFSLSGALSMALCFINR 190
Query: 135 VFRSGLL--HPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
+ + L RIL Q SPD QY+++MNAIFSA++ + +D+C L +S FLQQ
Sbjct: 191 LEKEKPLGMSLNSRILTFQVSPDISSQYISVMNAIFSAEKMSIMLDACVLSNDDSTFLQQ 250
>gi|430811432|emb|CCJ31073.1| unnamed protein product [Pneumocystis jirovecii]
gi|430812043|emb|CCJ30521.1| unnamed protein product [Pneumocystis jirovecii]
Length = 284
Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 102/204 (50%), Gaps = 27/204 (13%)
Query: 10 SDDVS-LVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS 66
DDVS L+VV+LDTNPF W S + F + L FLNA L+ NQ N + V+A+ N
Sbjct: 18 EDDVSNLLVVILDTNPFGWDALSEYIPFDVAIREFLVFLNAHLSSNQNNDLAVLASHTNF 77
Query: 67 CDYVYDS----SSTGNQSVGNGRMPS-------------LCATLLQNLEEFMNKDEQLGK 109
Y+Y S S ++V + + + NL++ ++K + +
Sbjct: 78 VQYLYPSVQVSSKDNEKAVEENKEDKDFQKSNIYRPFYLMNKQIQDNLKKLIDKANEQDE 137
Query: 110 QEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHP-QPRILCLQGSPDGPEQYVAIMNAIF 168
P +++ GSL MAL Y+ R +S + RIL + S D QY+ IMN IF
Sbjct: 138 DTPS-----TMIGGSLCMALAYVNRAMQSASKNRLNARILIISVSSDITFQYIPIMNCIF 192
Query: 169 SAQRSMVPIDSCYLGAQNSAFLQQ 192
AQ+ +PID C +G ++ FLQQ
Sbjct: 193 GAQKKKIPIDVCKIGG-DTVFLQQ 215
>gi|328874423|gb|EGG22788.1| general transcription factor IIH [Dictyostelium fasciculatum]
Length = 304
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 104/199 (52%), Gaps = 26/199 (13%)
Query: 11 DDVSLVVVLLDTNPFFWS---------------SSSLSFSQFLTHVLAFLNAILTLNQLN 55
DD SL+V+++D N + W S ++ S F H++ F+NA L LNQ N
Sbjct: 8 DDTSLLVIIVDLNAYSWGKQVELAEQNIDSTSGSRFITLSTFFEHLVIFINAYLLLNQEN 67
Query: 56 QVVVIATGYNSCDYVYDSS--STGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPE 113
Q+ VI++ ++Y S+ T ++S+ SL N+ + + ++ L +E
Sbjct: 68 QIAVISSNVGESSFIYPSNHVDTKDKSISFKISQSL-----NNISKHLIEEIHLTSEENS 122
Query: 114 GRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRS 173
+ S ++S+ALCYI R+ + + RIL SPD QY+ +MN IFSAQ+
Sbjct: 123 SSSS---FSAAMSLALCYINRIKKDNST-IRSRILVFNISPDVSTQYIPVMNCIFSAQKQ 178
Query: 174 MVPIDSCYLGAQNSAFLQQ 192
+P+DSC L + +S FLQQ
Sbjct: 179 SIPVDSCILTSTDSTFLQQ 197
>gi|328852556|gb|EGG01701.1| hypothetical protein MELLADRAFT_110826 [Melampsora larici-populina
98AG31]
Length = 316
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 102/205 (49%), Gaps = 28/205 (13%)
Query: 10 SDDVSLVVVLLDTNPFFWS------SSSLSF---SQFLTHVLAFLNAILTLNQLNQVVVI 60
+D L++++LD NP WS +SS F + FL VL F N L++ N + +
Sbjct: 5 TDPADLLIIILDLNPSSWSNFKHQSTSSEEFIELTSFLETVLVFSNTHLSIRHENSLAIY 64
Query: 61 ATGYNSCDYVYDSSSTG--NQSVGNGRMPSLCATLL-------QNLEEFMN-KDEQLGKQ 110
A+ + + +Y + G N SV R + T +++ M D+ L
Sbjct: 65 ASMIGTSELLYSTLENGVKNDSVSGHRDSNTYQTFRVLDDCVSDCVKKLMKVNDQDLKSG 124
Query: 111 EPEGRIACSLLSGSLSMALCYIQRVFRSGLLHP---QPRILCLQGSPDGPEQYVAIMNAI 167
+P G + +L+ ALC+I RV + +PRIL + SPD P QY+ +MN I
Sbjct: 125 QPTGTV------NALAKALCHINRVTKEETRPKDSLKPRILIISISPDSPGQYIPMMNCI 178
Query: 168 FSAQRSMVPIDSCYLGAQNSAFLQQ 192
FSAQ+S +PID C + +++ FLQQ
Sbjct: 179 FSAQKSCIPIDVCKITGEDAVFLQQ 203
>gi|281211236|gb|EFA85402.1| general transcription factor IIH [Polysphondylium pallidum PN500]
Length = 276
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 104/207 (50%), Gaps = 37/207 (17%)
Query: 11 DDVSLVVVLLDTNPFFWSSSS---------------LSFSQFLTHVLAFLNAILTLNQLN 55
DD SL+V++ D N + W + ++ F+ ++L F+NA L LNQ N
Sbjct: 12 DDNSLLVIVADFNIYSWGQRAQTVQSEGRDGRRFPLITLPTFIENLLVFINAYLMLNQEN 71
Query: 56 QVVVIATGYNSCDYVY----DSSSTGNQSVGN------GRMPSLCATLLQNLEEFMNKDE 105
Q+ +I++ +VY + T ++ + R+ ++C L+NL++
Sbjct: 72 QIALISSVIGESYFVYPPQPQQALTDHRCISEQIQSSLERINTIC---LENLDK------ 122
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMN 165
+E + + S S ++S+ALCYI R+ + + RIL SPD QY+ +MN
Sbjct: 123 --RSEEQQQQDCTSSFSAAMSLALCYINRI-KKEFPSLRARILVFNLSPDVSTQYIPVMN 179
Query: 166 AIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
IFSAQ+ +P+DSC L +S FLQQ
Sbjct: 180 CIFSAQKQSIPVDSCVLSTTDSTFLQQ 206
>gi|358060458|dbj|GAA93863.1| hypothetical protein E5Q_00509 [Mixia osmundae IAM 14324]
Length = 331
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 97/201 (48%), Gaps = 31/201 (15%)
Query: 15 LVVVLLDTNPFFWSSSS--------LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS 66
L+ +++DTN W S+ LS S+ L +L FLNA L L N+++V G
Sbjct: 10 LLCIIIDTNVLAWHESAQSSESGDRLSLSEALETLLVFLNAHLALRDQNELLVYGAGPGH 69
Query: 67 CDYVYDS------SSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQ--------EP 112
+ +Y S SS + S N R S F D Q+ K EP
Sbjct: 70 SEMIYSSFDDQGESSADHASETNERYAS-------TFPRFRQVDTQVSKAVGQMMRELEP 122
Query: 113 EGRIACSLLSGSLSMALCYIQRVFRSGLLHP-QPRILCLQGSPDGPEQYVAIMNAIFSAQ 171
+ +++S +L+ LC+I R+ R H +PR+L L S D QY+ +MN IFSAQ
Sbjct: 123 DTDAPPAIVS-ALARTLCHINRISREETKHTIKPRVLLLSVSHDSSSQYIPLMNCIFSAQ 181
Query: 172 RSMVPIDSCYLGAQNSAFLQQ 192
++ VPID C + ++ FLQQ
Sbjct: 182 KANVPIDVCKIYGDDAVFLQQ 202
>gi|417398730|gb|JAA46398.1| Putative rna polymer [Desmodus rotundus]
Length = 308
Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 107/203 (52%), Gaps = 19/203 (9%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKGSQFTLSKCMDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVY--DSSSTGNQSVGNGRMPSLCAT--------LLQNLEEFMNKD--EQLGKQEP 112
++Y + G+ G+ P LC + LL E + + + + K +
Sbjct: 65 QESRFLYPGRNGRMGDFFGDPGKTPELCPSGSKDGKYELLTAANEVIVDEIKDLMTKSDI 124
Query: 113 EGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFSA 170
+G+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+ MN IF+A
Sbjct: 125 KGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVVKAAEDSALQYMNFMNVIFAA 184
Query: 171 QRSMVPIDSCYLGAQNSAFLQQC 193
Q+ + ID+C L + + Q C
Sbjct: 185 QKQSILIDACVLDSDSGLLQQAC 207
>gi|384494657|gb|EIE85148.1| hypothetical protein RO3G_09858 [Rhizopus delemar RA 99-880]
Length = 268
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 105/209 (50%), Gaps = 30/209 (14%)
Query: 11 DDVSLVVVLLDTNPFFWSSSS-----LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
DD +L+V+++DTNPF W+ S+ LS L +L ++NA L L N + VIA+
Sbjct: 9 DDSNLLVIIIDTNPFAWNDSAKAELPLSLDDALNQILIYINAHLALKHNNNIAVIASHVG 68
Query: 66 SCDYVY---DSSSTGNQSVGNGRMPSL-------CATLLQNLEEFMNKDEQLGKQEPEGR 115
++Y D+ + N + ++ ++ NL+ ++ + + G
Sbjct: 69 HSQFLYPLPDNQEPAEGANFNKKDANVYPYFQFVTDQVVSNLQRLLSNTDTSFLTKDMGP 128
Query: 116 IACSLLSGSLSMALCYIQRVFR---SGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQR 172
S ++G+LSMALCYI R+ + G + +PRIL L SPD QY+ +MN IFSAQ+
Sbjct: 129 TT-STITGALSMALCYINRITKLDDEGYI--KPRILVLSVSPDSAFQYIPLMNCIFSAQK 185
Query: 173 SMVPIDSCYLGAQNSAFLQQCMSDRLLTL 201
+CY Q+ AFL S L L
Sbjct: 186 ------ACY---QHMAFLPDRYSRNFLNL 205
>gi|334327155|ref|XP_001375408.2| PREDICTED: general transcription factor IIH subunit 3-like, partial
[Monodelphis domestica]
Length = 308
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 104/206 (50%), Gaps = 26/206 (12%)
Query: 11 DDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGYN 65
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 DELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVMGNSHLFMNRSNKLAVIASHIQ 64
Query: 66 SCDYVYDSSS---------TGNQSV-------GNGRMPSLCATLLQNLEEFMNKDEQLGK 109
++Y + GN + +G+ L A EE + + K
Sbjct: 65 ESRFLYPGKNWKFGDIFGDPGNSATEYNPSGSKDGKYELLTAANEAITEEI---KDLMTK 121
Query: 110 QEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAI 167
+ EG+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+ MN I
Sbjct: 122 SDMEGQHTETLLAGSLAKALCYIHRMSKEVKDNQEMKSRILVIKAAEDSALQYMNFMNVI 181
Query: 168 FSAQRSMVPIDSCYLGAQNSAFLQQC 193
F+AQ+ + ID+C L A + Q C
Sbjct: 182 FAAQKQNIVIDACVLDADSGLLQQAC 207
>gi|66730451|ref|NP_001019407.1| general transcription factor IIH subunit 3 [Rattus norvegicus]
gi|81888006|sp|Q561R7.1|TF2H3_RAT RecName: Full=General transcription factor IIH subunit 3; AltName:
Full=General transcription factor IIH polypeptide 3
gi|62531219|gb|AAH93380.1| General transcription factor IIH, polypeptide 3 [Rattus norvegicus]
gi|149063248|gb|EDM13571.1| general transcription factor IIH, polypeptide 3 [Rattus norvegicus]
Length = 309
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 104/210 (49%), Gaps = 32/210 (15%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ NA L +N+ NQ+ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCMDAVMVLANAHLFMNRSNQLAVIASHI 64
Query: 65 NSCDYVY-------------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDE 105
++Y D + +G++ + + + + +++ M K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNALPDCNPSGSKDGKYELLTAANEVIAEEIKDLMTKSD 124
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAI 163
G+ +LL+GSL+ ALCYI R ++ + + RIL ++ + D QY+
Sbjct: 125 IKGQHTE------TLLAGSLAKALCYIHRASKAVKDNQEMKSRILVIKAAEDSALQYMNF 178
Query: 164 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
MN IF+AQ+ + ID+C L + + Q C
Sbjct: 179 MNVIFAAQKQNILIDACVLDSDSGLLQQAC 208
>gi|432873950|ref|XP_004072398.1| PREDICTED: general transcription factor IIH subunit 3-like [Oryzias
latipes]
Length = 300
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 100/198 (50%), Gaps = 19/198 (9%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSS-----LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
D+V+L+V+++D NP +W + + S+ L V+ N+ + L + N++ VIA+
Sbjct: 4 EDEVNLLVIVVDVNPIWWGQQAQREPEFTLSKCLDGVMVMGNSHMALTRTNKLAVIASHC 63
Query: 65 NSCDYVYDSSSTG--------NQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRI 116
++Y S S G S +G+ L EE N L K E G
Sbjct: 64 QDSHFLYPSKSLGGGGGAAEDTSSSRDGKYELLAVANSAIAEEIRNV---LSKTEVRGNS 120
Query: 117 ACSLLSGSLSMALCYIQRVFRSGLL--HPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSM 174
+LL+GSL+ ALCYI RV + + + RIL ++ + D QY+ MN IF+AQ+
Sbjct: 121 TDTLLAGSLAKALCYIYRVSKELDVGQEIKSRILVIKAAEDCALQYMNFMNVIFAAQKQN 180
Query: 175 VPIDSCYLGAQNSAFLQQ 192
+ ID+C L + +S LQQ
Sbjct: 181 ILIDACVLDS-DSGLLQQ 197
>gi|170093117|ref|XP_001877780.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647639|gb|EDR11883.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 360
Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 104/207 (50%), Gaps = 33/207 (15%)
Query: 12 DVSLVVVLLDTNPFFWSSSSL-------SFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
D S + V+LD +P W S L S + FL+HVLAFLNA L N + V
Sbjct: 11 DASHLSVVLDLSPTQWHLSGLLSNKYPLSLNSFLSHVLAFLNAHLASQHENTLAVFGAFP 70
Query: 65 NSCDYVYDSSSTGN---QSV-GNGRMPS--LCATLLQNLEEFMNKDEQLGKQEPEGRIAC 118
+Y SS+ N QS+ N P + +T++ + + ++ +Q ++ P C
Sbjct: 71 GKSLMLY-SSTLHNPELQSIDSNSYAPFKLVDSTIINRISDELDAIDQSEEEAP-----C 124
Query: 119 SLLSGSLSMALCYIQRV-------------FRSGLLHPQPRILCLQGSPDGPEQYVAIMN 165
+L+ G+L+ ALCY+ R+ R + P PRIL L SPD Y+ IMN
Sbjct: 125 ALV-GALTKALCYVNRISLPPPSNSSTSPNTRDSTVLPDPRILILSVSPDLSTSYIPIMN 183
Query: 166 AIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
+IFSAQ+ V ID+C + ++ FLQQ
Sbjct: 184 SIFSAQKLKVTIDACQVYGPDAVFLQQ 210
>gi|348554273|ref|XP_003462950.1| PREDICTED: general transcription factor IIH subunit 3-like [Cavia
porcellus]
Length = 309
Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 105/210 (50%), Gaps = 32/210 (15%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + VL N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCMDAVLVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVYDSSS---------TGN-------QSVGNGRMPSLCA---TLLQNLEEFMNKDE 105
+ ++Y + GN +G+ L A +++ +++ M K +
Sbjct: 65 HESRFLYPGKNGRLGDFFGDAGNPPPEYNPSGSKDGKYELLTAANEVIVEEIKDLMTKSD 124
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAI 163
G+ +LL+GSL+ ALCYI R+ + + + RIL L+ + D QY+
Sbjct: 125 IKGQHTE------TLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVLKAAEDSALQYMNF 178
Query: 164 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
MN IF+AQ+ + ID+C L + Q C
Sbjct: 179 MNVIFAAQKQNILIDACVLDTDSGLLQQAC 208
>gi|395513842|ref|XP_003761131.1| PREDICTED: general transcription factor IIH subunit 3 [Sarcophilus
harrisii]
Length = 316
Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 105/212 (49%), Gaps = 32/212 (15%)
Query: 8 LYSDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIAT 62
L D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 9 LADDELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVMGNSHLFMNRSNKLAVIAS 68
Query: 63 GYNSCDYVY-------------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNK 103
++Y D + +G++ + + + + +++ M K
Sbjct: 69 HIQESRFLYPGKNWKFGDFFGDPGCSSADYNPSGSKDGKYELLTAANEVITEEIKDLMTK 128
Query: 104 DEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYV 161
+ EG+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+
Sbjct: 129 SDM------EGQRTETLLAGSLAKALCYIHRMGKEVKDNQEMKSRILVIKAAEDSALQYM 182
Query: 162 AIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
MN IF+AQ+ + ID+C L + Q C
Sbjct: 183 NFMNVIFAAQKQNIVIDACVLDTDSGLLQQAC 214
>gi|66819921|ref|XP_643618.1| general transcription factor IIH, polypeptide 3 [Dictyostelium
discoideum AX4]
gi|74861043|sp|Q86IB5.1|TF2H3_DICDI RecName: Full=General transcription factor IIH subunit 3; AltName:
Full=TFIIH basal transcription factor complex subunit 3
gi|60471553|gb|EAL69509.1| general transcription factor IIH, polypeptide 3 [Dictyostelium
discoideum AX4]
Length = 372
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 91/174 (52%), Gaps = 16/174 (9%)
Query: 32 LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVG--------- 82
+ F++FL H + F+NA L LNQ NQ+ +I + +V+ S+
Sbjct: 90 IGFNKFLEHFMVFINAYLMLNQENQLAIICSKIGESSFVFPQSNIDQYQQEQQELEQRQL 149
Query: 83 --NGRM-PSLCATLL-QNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRS 138
NG + P+ T+ Q L + D ++ + + I S S S+S+ALCYI R+ R
Sbjct: 150 NENGELLPTPNKTIQGQILAKLQKLDLEIKHDQTD--ILSSSFSASMSIALCYINRIKRE 207
Query: 139 GLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
+PRIL SPD QY+++MN IFS+Q+ +P+DSC L +S FLQQ
Sbjct: 208 TPT-IKPRILVFNISPDVSSQYISVMNCIFSSQKQSIPVDSCILSQSDSTFLQQ 260
>gi|198432365|ref|XP_002120803.1| PREDICTED: similar to general transcription factor IIH, polypeptide
3, 34kDa [Ciona intestinalis]
Length = 309
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 101/208 (48%), Gaps = 38/208 (18%)
Query: 11 DDVSLVVVLLDTNPFFWSSSSLS----FSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS 66
++ L+VV+ D NP +W SL ++ L +L F+N+ L L N++ +IA+
Sbjct: 5 EERQLLVVIFDVNPVWWGIKSLQGQAQITKCLDCLLVFVNSYLMLRHDNKLAIIASHSTK 64
Query: 67 CDYVY-----------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPE-G 114
++Y +S +Q+ G+ R E F D+ + + E
Sbjct: 65 SVFLYPAQESSHSPDPSKASISDQAGGDCR-----------YEHFAKVDDSVTDKFKELM 113
Query: 115 RIAC--------SLLSGSLSMALCYIQR--VFRSGLLHPQPRILCLQGSPDGPEQYVAIM 164
R C SL++GS+++ALCYI R + G RIL ++ + D QY++ M
Sbjct: 114 RDGCEKNDIRRDSLIAGSMAIALCYIHRMQIESQGNTKLNARILVIKAADDAASQYMSFM 173
Query: 165 NAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
N IF+AQ+ V +D+C LG Q+S LQQ
Sbjct: 174 NVIFAAQKERVVVDACILG-QDSGLLQQ 200
>gi|345564048|gb|EGX47029.1| hypothetical protein AOL_s00097g75 [Arthrobotrys oligospora ATCC
24927]
Length = 374
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 105/240 (43%), Gaps = 62/240 (25%)
Query: 7 KLYSDDVSLVVVLLDTNPFFWS----SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIAT 62
K +D +L V++LDTNP W+ SSSLSF L+ +L F NA L +Q N+ VIA
Sbjct: 13 KAPADLATLQVIILDTNPLAWATFEKSSSLSFPAALSQLLIFANAHLAFSQSNRCAVIAN 72
Query: 63 GYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQ---------------- 106
+ ++ + + R P ++L+E N++
Sbjct: 73 HIDGVHFLSPADPGTDH-----RDPGEADLTPEDLKEIANQNASKYRVFRLLEDEVRASY 127
Query: 107 ---LGKQEPEGRIAC---SLLSGSLSMALCYIQRVFRSG--------------------- 139
+ PE +AC S L+G+LS AL YI R+ G
Sbjct: 128 RRLIKNTTPEAVMACPNSSYLAGALSAALTYINRICFGGTGGRSSGVPGDEKSKVNSAGG 187
Query: 140 -------LLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
+H +IL + +PD QY+ +MN+IF+AQR VPID C L ++ FLQQ
Sbjct: 188 KVDETGRTMH--AKILVVSVTPDPANQYIPVMNSIFAAQRLKVPIDVCKL-RDSTVFLQQ 244
>gi|389741855|gb|EIM83043.1| Tfb4-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 400
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 96/212 (45%), Gaps = 40/212 (18%)
Query: 11 DDVSLVVVLLDTNPFFW-------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
D S + +++D +P W ++ L FL+HVL F+N+ + N + V
Sbjct: 2 DKASHLSLIIDLSPSQWLLSADPSNAHPLPLHVFLSHVLTFINSHIASKHENSLAVFGAL 61
Query: 64 -------YNSCDYVYDSSSTGNQSVGNGRMP------SLCATLLQNLE--EFMNKDEQLG 108
Y+S D + D T ++S N P ++ + + LE E NK E+
Sbjct: 62 PGKSVMLYSSSDSIPDQDQTADESSANSYRPFRLVDSAIVRRITEELELLEAQNKPEE-- 119
Query: 109 KQEPEGRIACSLLSGSLSMALCYIQRVFR--------SGLLHPQPRILCLQGSPDGPEQY 160
EP L G+L+ ALCYI R+ H PRIL L SPD Y
Sbjct: 120 --EPVA------LVGALTKALCYINRITHVPTANAPEDPAAHVDPRILILSVSPDLSTAY 171
Query: 161 VAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
+ +MN+IFSAQ+ V ID C + ++ FLQQ
Sbjct: 172 IPVMNSIFSAQKLKVTIDVCKVYGPDTVFLQQ 203
>gi|50540194|ref|NP_001002564.1| general transcription factor IIH, polypeptide 3 [Danio rerio]
gi|49900709|gb|AAH76236.1| General transcription factor IIH, polypeptide 3 [Danio rerio]
Length = 296
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 106/214 (49%), Gaps = 14/214 (6%)
Query: 11 DDVSLVVVLLDTNPFFWSSSS-----LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
DD++++V++LD NP +W + + S L ++ NA L +++ N++ VI + Y+
Sbjct: 5 DDINILVIVLDVNPVWWGQQAQREPKFTLSACLDSLMVLANAHLVMSRTNKLAVITSLYH 64
Query: 66 SCDYVYDSSS--TGNQSVGN--GRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLL 121
++Y S +G + N G+ L T EE N E + E G +LL
Sbjct: 65 ESHFLYPSKQWRSGEEISANPDGKYELLSVTNDLFAEEIRNLME---RAEVSGSQTETLL 121
Query: 122 SGSLSMALCYIQRVFRS--GLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDS 179
+ SL+ ALCYI R+ + + RIL ++ + D QY+ MN IF+AQ+ + ID+
Sbjct: 122 AVSLARALCYINRISKDVQAGQEVKSRILVIKAAEDSTSQYMNFMNVIFAAQKKNILIDA 181
Query: 180 CYLGAQNSAFLQQCMSDRLLTLLVEYIISLNNWM 213
C L + + Q C L L V ++L ++
Sbjct: 182 CVLDSDSGLLQQACDITGGLYLRVPQKVALTQYL 215
>gi|31088894|ref|NP_852075.1| general transcription factor IIH subunit 3 [Mus musculus]
gi|22654149|sp|Q8VD76.1|TF2H3_MOUSE RecName: Full=General transcription factor IIH subunit 3; AltName:
Full=Basic transcription factor 2 34 kDa subunit;
Short=BTF2 p34; AltName: Full=General transcription
factor IIH polypeptide 3; AltName: Full=TFIIH basal
transcription factor complex p34 subunit
gi|17028402|gb|AAH17515.1| General transcription factor IIH, polypeptide 3 [Mus musculus]
gi|74228938|dbj|BAE21939.1| unnamed protein product [Mus musculus]
gi|148687628|gb|EDL19575.1| general transcription factor IIH, polypeptide 3 [Mus musculus]
Length = 309
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 103/210 (49%), Gaps = 32/210 (15%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ NQ+ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCMDAVMVLANSHLFMNRSNQLAVIASHI 64
Query: 65 NSCDYVY-------------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDE 105
+Y D + +G++ + + + +++ M K +
Sbjct: 65 QESRLLYPGKNGGLGDFFGDPGNALPDCNPSGSKDGKYELLTVANEVIAEEIKDLMTKSD 124
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAI 163
G+ +LL+GSL+ ALCYI RV ++ + + RIL ++ + D QY+
Sbjct: 125 IKGQHTE------TLLAGSLAKALCYIHRVNKAVKDNQEMKSRILVIKAAEDSALQYMNF 178
Query: 164 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
MN IF+AQ+ + ID+C L + + Q C
Sbjct: 179 MNVIFAAQKQNILIDACVLDSDSGLLQQAC 208
>gi|325190435|emb|CCA24938.1| general transcription factor IIH subunit putative [Albugo laibachii
Nc14]
Length = 288
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 114/214 (53%), Gaps = 26/214 (12%)
Query: 14 SLVVVLLDTNPFFW----------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
+ +V++LDTNP W S SL F + + VL F+++ L LN+ N+++++A
Sbjct: 7 AFLVLILDTNPSHWWRNVDGMPTDQSDSL-FQRTVKSVLIFVSSYLLLNRSNRLILLAAH 65
Query: 64 YNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSG 123
S +Y + + ++S ++ + +L+NL + + + + + +SG
Sbjct: 66 AGSSVTLYPDALSESESESGDQIGLIRNIVLKNLLALSEQTHDVTSK------STTSISG 119
Query: 124 SLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLG 183
S+S LC + RV + PRI +Q SPD PE Y++IMN+IFSAQ+ V ID+C L
Sbjct: 120 SISRGLCCMNRVLKENA-QLCPRIFVIQRSPDVPEHYISIMNSIFSAQKKTVAIDACILS 178
Query: 184 AQNSAFLQQCM--------SDRLLTLLVEYIISL 209
++S F+QQ R++ L++Y+I+L
Sbjct: 179 EEHSPFMQQATYLTGGIYYKPRVIDGLLQYLITL 212
>gi|190358598|ref|NP_001121894.1| uncharacterized protein LOC100151595 [Danio rerio]
Length = 296
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 106/214 (49%), Gaps = 14/214 (6%)
Query: 11 DDVSLVVVLLDTNPFFWSSSS-----LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
DD++++V++LD NP +W + + S L ++ NA L +++ N++ VI + Y+
Sbjct: 5 DDINILVIVLDVNPVWWGQQAQREPKFTLSACLDSLMVLANAHLVMSRTNKLAVITSLYH 64
Query: 66 SCDYVYDSSS--TGNQSVGN--GRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLL 121
++Y S +G + N G+ L T EE N E + E G +LL
Sbjct: 65 ESHFLYPSKQWRSGEEISANPDGKYELLSVTNDLFAEEIRNLME---RAEVSGSQTETLL 121
Query: 122 SGSLSMALCYIQRVFRS--GLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDS 179
+ SL+ ALCYI R+ + + RIL ++ + D QY+ MN IF+AQ+ + ID+
Sbjct: 122 AVSLARALCYINRISKDVQAGQEVKSRILVIKAAEDSTSQYMNFMNVIFAAQKKNILIDA 181
Query: 180 CYLGAQNSAFLQQCMSDRLLTLLVEYIISLNNWM 213
C L + + Q C L L V ++L ++
Sbjct: 182 CVLDSDSGLLQQACDITGGLYLRVPQKVALTQYL 215
>gi|118601766|ref|NP_001073057.1| general transcription factor IIH subunit 3 [Bos taurus]
gi|426247186|ref|XP_004017367.1| PREDICTED: general transcription factor IIH subunit 3 [Ovis aries]
gi|122131719|sp|Q05B56.1|TF2H3_BOVIN RecName: Full=General transcription factor IIH subunit 3; AltName:
Full=General transcription factor IIH polypeptide 3
gi|115545470|gb|AAI22793.1| General transcription factor IIH, polypeptide 3, 34kDa [Bos taurus]
gi|296478493|tpg|DAA20608.1| TPA: general transcription factor IIH subunit 3 [Bos taurus]
Length = 309
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 104/207 (50%), Gaps = 26/207 (12%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVYDSSS---------TGNQSV-------GNGRMPSLCATLLQNLEEFMNKDEQLG 108
++Y + GN S +G+ L A EE + +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPSSEFTPSGSKDGKYELLTAANEVIAEEI---KDLMT 121
Query: 109 KQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNA 166
K + EG+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+ MN
Sbjct: 122 KSDIEGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNV 181
Query: 167 IFSAQRSMVPIDSCYLGAQNSAFLQQC 193
IF+AQ+ + ID+C L + + Q C
Sbjct: 182 IFAAQKQNILIDACVLDSDSGLLQQAC 208
>gi|440898315|gb|ELR49840.1| General transcription factor IIH subunit 3, partial [Bos grunniens
mutus]
Length = 305
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 104/207 (50%), Gaps = 26/207 (12%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 1 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 60
Query: 65 NSCDYVYDSSS---------TGNQSV-------GNGRMPSLCATLLQNLEEFMNKDEQLG 108
++Y + GN S +G+ L A EE + +
Sbjct: 61 QESRFLYPGKNGRLGDFFGDPGNPSSEFTPSGSKDGKYELLTAANEVIAEEI---KDLMT 117
Query: 109 KQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNA 166
K + EG+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+ MN
Sbjct: 118 KSDIEGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNV 177
Query: 167 IFSAQRSMVPIDSCYLGAQNSAFLQQC 193
IF+AQ+ + ID+C L + + Q C
Sbjct: 178 IFAAQKQNILIDACVLDSDSGLLQQAC 204
>gi|194042856|ref|XP_001927574.1| PREDICTED: general transcription factor IIH subunit 3 isoform 1
[Sus scrofa]
Length = 309
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 106/210 (50%), Gaps = 32/210 (15%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVYDSSS---------TGNQSV-------GNGRMPSLCA---TLLQNLEEFMNKDE 105
++Y + GN S +G+ L A + + +++ M K
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPSSEFNPSGSKDGKYELLTAANDVIAEEIKDLMTK-- 122
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAI 163
+ EG+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+
Sbjct: 123 ----SDIEGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNF 178
Query: 164 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
MN IF+AQ+ + ID+C L + + Q C
Sbjct: 179 MNVIFAAQKQNILIDACVLDSDSGLLQQAC 208
>gi|354491444|ref|XP_003507865.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
2 [Cricetulus griseus]
gi|344248744|gb|EGW04848.1| General transcription factor IIH subunit 3 [Cricetulus griseus]
Length = 313
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 106/212 (50%), Gaps = 32/212 (15%)
Query: 8 LYSDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIAT 62
L D+++L+V+++DTNP +W +L SQF + V+ N+ L +++ NQ+ VIA+
Sbjct: 7 LAEDELNLLVIIVDTNPIWWGKQALKGSQFTLSKCMDAVMVLANSHLFMHRSNQLAVIAS 66
Query: 63 GYNSCDYVY-------------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNK 103
++Y D + +G++ + + + + +++ M K
Sbjct: 67 HIQESRFLYPGKNGRLGDFFGDPGNPFPDCNPSGSKDGKYELLTAANDVIAEEIKDLMTK 126
Query: 104 DEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYV 161
+ G+ +LL+GSL+ ALCYI R+ ++ + + RIL ++ + D QY+
Sbjct: 127 SDIKGQHTE------TLLAGSLAKALCYIHRMNKAVKDNQEMKSRILVIKAAEDSALQYM 180
Query: 162 AIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
MN IF+AQ+ + ID+C L + + Q C
Sbjct: 181 NFMNVIFAAQKQNILIDACILDSDSGLLQQAC 212
>gi|410922922|ref|XP_003974931.1| PREDICTED: general transcription factor IIH subunit 3-like
[Takifugu rubripes]
Length = 298
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 101/197 (51%), Gaps = 19/197 (9%)
Query: 11 DDVSLVVVLLDTNPFFWS-----SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
D++SL+V+++D NP +W S + S+ L V+ N+ + + + N++ VIA+
Sbjct: 5 DEISLLVIVVDVNPIWWGQQAQRESEFTLSKCLDSVMVLGNSHMAMARTNKLAVIASHCQ 64
Query: 66 SCDYVYDSSS-----TGNQSV---GNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIA 117
++Y S+ G ++ G+G+ L EE N + K E G
Sbjct: 65 DSHFLYPSNKLQGGENGEENTSCSGDGKYELLSIANNSIAEEMRNL---MLKTEVRGNSN 121
Query: 118 CSLLSGSLSMALCYIQRVFRSGLL--HPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMV 175
+LL+GSL+ ALCYI RV + + + RIL ++ + D QY+ MN IF+AQ+ +
Sbjct: 122 DTLLAGSLAKALCYINRVSKEMEVGQETKSRILVIKAAEDCALQYMNFMNVIFAAQKQNI 181
Query: 176 PIDSCYLGAQNSAFLQQ 192
ID+C L +S LQQ
Sbjct: 182 LIDACVLD-MDSGLLQQ 197
>gi|301754663|ref|XP_002913183.1| PREDICTED: general transcription factor IIH subunit 3-like
[Ailuropoda melanoleuca]
Length = 309
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 105/210 (50%), Gaps = 32/210 (15%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVYDSSS---------TGNQSV-------GNGRMPSLCAT---LLQNLEEFMNKDE 105
++Y + GN S +G+ A + + +++ M K E
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPSSEFSPSGSKDGKYELFTAANEIIAEEIKDLMTKSE 124
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAI 163
G+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+ +
Sbjct: 125 IKGQHTE------TLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNL 178
Query: 164 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
MN IF+AQ+ + ID+C L + + Q C
Sbjct: 179 MNVIFAAQKQNILIDACVLDSDSGLLQQAC 208
>gi|149633387|ref|XP_001507590.1| PREDICTED: general transcription factor IIH subunit 3-like
[Ornithorhynchus anatinus]
Length = 311
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 106/207 (51%), Gaps = 22/207 (10%)
Query: 8 LYSDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIAT 62
L ++++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 LSDEELNLLVIVVDTNPIWWGKQALRESQFTLSKCIDAVMVMGNSHLLMNRTNKLAVIAS 64
Query: 63 GYNSCDYVY------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKD--EQLG 108
++Y D+ S+ + +G LL E + ++ + +
Sbjct: 65 HIQESRFLYPGKNWKLGEFSGDACSSPTEYNPSGSKDGK-YELLTTANEVITEEIKDLMT 123
Query: 109 KQEPEGRIACSLLSGSLSMALCYIQRVFR--SGLLHPQPRILCLQGSPDGPEQYVAIMNA 166
K + +G+ +LL+GSL+ ALCYI R+ + + RIL ++ S D QY+ MN
Sbjct: 124 KSDMKGQHTETLLAGSLAKALCYIHRMNKEVKDSQEMRSRILVIKASEDSALQYMNFMNV 183
Query: 167 IFSAQRSMVPIDSCYLGAQNSAFLQQC 193
IF+AQ+ + ID+C L + + Q C
Sbjct: 184 IFAAQKQNILIDACVLDSDSGLLQQAC 210
>gi|395846791|ref|XP_003796077.1| PREDICTED: general transcription factor IIH subunit 3 [Otolemur
garnettii]
Length = 309
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 105/210 (50%), Gaps = 32/210 (15%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVMGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVYDSSS-------------------TGNQSVGNGRMPSLCATLLQNLEEFMNKDE 105
+ ++Y + TG++ + + +++ +++ M K +
Sbjct: 65 HESRFLYPGKNGRLGDFFGDPGNPPPEFNPTGSKDGKYELLTAANEVIVEEIKDLMTKSD 124
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAI 163
G+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+
Sbjct: 125 IKGQHTE------TLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNF 178
Query: 164 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
MN IF+AQ+ + ID+C L + + Q C
Sbjct: 179 MNVIFAAQKQNILIDACVLDSDSGLLQQAC 208
>gi|149720731|ref|XP_001498402.1| PREDICTED: general transcription factor IIH subunit 3-like [Equus
caballus]
Length = 309
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 107/210 (50%), Gaps = 32/210 (15%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRCNKLAVIASHI 64
Query: 65 NSCDYVY---------------DSSSTGNQS-VGNGRMPSLCA---TLLQNLEEFMNKDE 105
++Y ++ S N S +G+ L A +++ +++ M K +
Sbjct: 65 QESRFLYPGKHGRLGDFFGDPGNAPSEFNPSGSKDGKYELLTAANEVIVEEIKDLMTKSD 124
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAI 163
G+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+
Sbjct: 125 IKGQHTE------TLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDTALQYMNF 178
Query: 164 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
MN IF+AQ+ + ID+C L + + Q C
Sbjct: 179 MNVIFAAQKQNILIDACVLDSDSGLLQQAC 208
>gi|348528468|ref|XP_003451739.1| PREDICTED: general transcription factor IIH subunit 3-like
[Oreochromis niloticus]
Length = 300
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 100/198 (50%), Gaps = 19/198 (9%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSS-----LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++D NP +W + + S+ + V+ NA + + + N++ VIA+
Sbjct: 4 EDEINLLVIVVDVNPIWWGQQAQRDPQFTLSKCMDAVMVMGNAHMAMARTNKLAVIASHC 63
Query: 65 NSCDYVY--------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRI 116
++Y D S G+G+ L A EE N + K E G
Sbjct: 64 QGSHFLYPNKSWSGGDGGGNDASSSGDGKYELLSAANNLIAEEIRNI---MSKIEVTGNS 120
Query: 117 ACSLLSGSLSMALCYIQRVFRSGLL--HPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSM 174
+LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+ MN IF+AQ+
Sbjct: 121 TDTLLAGSLAKALCYIHRLTKELEVGQEIKSRILVVKAAEDCALQYMNFMNVIFAAQKQN 180
Query: 175 VPIDSCYLGAQNSAFLQQ 192
+ ID+C L + +S LQQ
Sbjct: 181 ILIDACVLDS-DSGLLQQ 197
>gi|354491442|ref|XP_003507864.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
1 [Cricetulus griseus]
Length = 309
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 105/210 (50%), Gaps = 32/210 (15%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +++ NQ+ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKGSQFTLSKCMDAVMVLANSHLFMHRSNQLAVIASHI 64
Query: 65 NSCDYVY-------------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDE 105
++Y D + +G++ + + + + +++ M K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPFPDCNPSGSKDGKYELLTAANDVIAEEIKDLMTKSD 124
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAI 163
G+ +LL+GSL+ ALCYI R+ ++ + + RIL ++ + D QY+
Sbjct: 125 IKGQHTE------TLLAGSLAKALCYIHRMNKAVKDNQEMKSRILVIKAAEDSALQYMNF 178
Query: 164 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
MN IF+AQ+ + ID+C L + + Q C
Sbjct: 179 MNVIFAAQKQNILIDACILDSDSGLLQQAC 208
>gi|291414274|ref|XP_002723381.1| PREDICTED: general transcription factor IIH, polypeptide 3, 34kDa
[Oryctolagus cuniculus]
Length = 309
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 104/210 (49%), Gaps = 32/210 (15%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ V+A+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVVASHI 64
Query: 65 NSCDYVYDSSS---------TGNQSV-------GNGRMPSLCA---TLLQNLEEFMNKDE 105
++Y + GN S +G+ L A +++ + + M K +
Sbjct: 65 QESRFLYPGKNGRVGDFFGDPGNPSSEFNPSGSKDGKYELLTAANEVIVEEIRDLMTKSD 124
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAI 163
G+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+
Sbjct: 125 IKGQHTE------TLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNF 178
Query: 164 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
MN IF+AQ+ + ID+C L + Q C
Sbjct: 179 MNVIFAAQKQNILIDACVLDTDSGLLQQAC 208
>gi|114647703|ref|XP_001170519.1| PREDICTED: general transcription factor IIH subunit 3 isoform 3
[Pan troglodytes]
gi|397481834|ref|XP_003812142.1| PREDICTED: general transcription factor IIH subunit 3 isoform 1
[Pan paniscus]
gi|410221584|gb|JAA08011.1| general transcription factor IIH, polypeptide 3, 34kDa [Pan
troglodytes]
gi|410252228|gb|JAA14081.1| general transcription factor IIH, polypeptide 3, 34kDa [Pan
troglodytes]
gi|410294034|gb|JAA25617.1| general transcription factor IIH, polypeptide 3, 34kDa [Pan
troglodytes]
gi|410334639|gb|JAA36266.1| general transcription factor IIH, polypeptide 3, 34kDa [Pan
troglodytes]
Length = 308
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 105/203 (51%), Gaps = 19/203 (9%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVY--DSSSTGNQSVGNGRMPSLCAT--------LLQNLEEFMNKD--EQLGKQEP 112
++Y + G+ G +P + LL + E + ++ + + K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNLPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDI 124
Query: 113 EGRIACSLLSGSLSMALCYIQRVFR--SGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSA 170
+G+ +LL+GSL+ ALCYI R+ + + RIL ++ + D QY+ MN IF+A
Sbjct: 125 KGQHTETLLAGSLAKALCYIHRMNKEIKDNQEMKSRILVIKAAEDSALQYMNFMNVIFAA 184
Query: 171 QRSMVPIDSCYLGAQNSAFLQQC 193
Q+ + ID+C L + + Q C
Sbjct: 185 QKQNILIDACVLDSDSGLLQQAC 207
>gi|367012173|ref|XP_003680587.1| hypothetical protein TDEL_0C04870 [Torulaspora delbrueckii]
gi|359748246|emb|CCE91376.1| hypothetical protein TDEL_0C04870 [Torulaspora delbrueckii]
Length = 325
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 101/216 (46%), Gaps = 25/216 (11%)
Query: 2 ASAPSKLYSDDV-SLVVVLLDTNPFFWSSSSLSFSQ------FLTHVLAFLNAILTLNQL 54
+ P Y+++ SL+ +++DT P W+ SQ ++ FLNA L N
Sbjct: 11 TTKPKSQYAEETPSLLTLVIDTAPKLWAELDDEKSQNANIISVFESIIVFLNAHLAFNSS 70
Query: 55 NQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQN--LEEFMNKDEQLGK--- 109
NQV VIA Y+Y S+ GN + +++ N +F N DE L +
Sbjct: 71 NQVAVIAAHSQGIKYLYPKSNVGNNKATSSSTSGKDLSIINNDMYRQFRNVDETLVEELY 130
Query: 110 ---QEPEGRI----ACSLLSGSLSMALCYIQRVFRS-GLLHPQPRILCLQ-GSPDGPE-- 158
QE + +I S L+G +S L YI R+ R + + R+L + GS G +
Sbjct: 131 KLFQEEKNQIDKVTQKSTLAGGISAGLTYINRISRELATIALKSRLLVITCGSGGGRDEI 190
Query: 159 -QYVAIMNAIFSAQRSMVPIDSCYLGA-QNSAFLQQ 192
QY+ IMN IFSA + PID +G + S FLQQ
Sbjct: 191 FQYIPIMNCIFSATKLKCPIDVVKIGGHRESTFLQQ 226
>gi|428174859|gb|EKX43752.1| hypothetical protein GUITHDRAFT_87651 [Guillardia theta CCMP2712]
Length = 343
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 96/194 (49%), Gaps = 12/194 (6%)
Query: 11 DDV-SLVVVLLDTNPFFWSSSSL----SFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
DD+ S ++V+LD N W+ S+ + + L +L FL A L+ N V +IA
Sbjct: 22 DDLPSSLIVILDLNQASWTESTAKGGPTVIEALESLLTFLRAFFMLHGGNTVTIIAAHPY 81
Query: 66 SCDYVYDS------SSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQE-PEGRIAC 118
+++Y S + G+Q G M + L + + + QE + + C
Sbjct: 82 GSEFLYQSPALQRSKAHGHQQSGALEMDEIDHRLHEKIVSLSKSLKSKSSQENSDSSMKC 141
Query: 119 SLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPID 178
SLLS + ++A C + R+ LL PR+L L S + P QY+ IMN IFS Q++ V ID
Sbjct: 142 SLLSSAFALAACTVNRISSHKLLRMLPRVLVLTASTELPSQYIPIMNCIFSMQKANVLID 201
Query: 179 SCYLGAQNSAFLQQ 192
+ + + +FLQQ
Sbjct: 202 ALVVSDGDCSFLQQ 215
>gi|427787947|gb|JAA59425.1| Putative transcription factor tfb4 [Rhipicephalus pulchellus]
Length = 293
Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 101/191 (52%), Gaps = 16/191 (8%)
Query: 11 DDVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
D+ SL+V ++DTNP + S+FL F N+ L LN N++ VIA +
Sbjct: 5 DEGSLLVTIIDTNPCASLLQNEEGIVSRFLDAATVFCNSHLMLNPCNRLAVIACHSHKSS 64
Query: 69 YVYDSS--STGNQSVGNGR---MPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSG 123
+VY + ST + +G+ + + + + ++E ++ D+ E +++ +LL+G
Sbjct: 65 FVYPKALPSTQDTVSVDGQYELFSEVTSAIKEGVKELVSSDKG------ESQVSETLLTG 118
Query: 124 SLSMALCYIQRVFR--SGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCY 181
LS+ALCYI R+ + +G RIL L S + QY+ MN F+AQ+ V ID+C
Sbjct: 119 GLSLALCYINRIEKETAGQKKIASRILVLSASGESASQYLNFMNVFFTAQKKNVIIDACV 178
Query: 182 LGAQNSAFLQQ 192
L ++S LQQ
Sbjct: 179 L-EKDSGLLQQ 188
>gi|47226419|emb|CAG08435.1| unnamed protein product [Tetraodon nigroviridis]
Length = 299
Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 103/202 (50%), Gaps = 26/202 (12%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSS-----LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
D++SL+V+++D NP +W + + S+ L ++ N+ + + + N++ VIA+
Sbjct: 4 EDEISLLVIVVDVNPIWWGQQAQRQPEFTLSKCLDAMMVLGNSHMAMARTNKLAVIASHC 63
Query: 65 NSCDYVYDSSS----TGN-----QSVGNGRMPSLCAT---LLQNLEEFMNKDEQLGKQEP 112
++Y S+ GN S G+G+ L +++ + M K E G
Sbjct: 64 QDSHFLYPSNKLQVGDGNGDENTSSSGDGKYELLSVANNLIVEEIRSVMLKTEVRGNSND 123
Query: 113 EGRIACSLLSGSLSMALCYIQRVFRSGLL--HPQPRILCLQGSPDGPEQYVAIMNAIFSA 170
+LL+GSL+ ALCYI RV + + + RIL ++ + D QY+ MN IF+A
Sbjct: 124 ------TLLAGSLAKALCYINRVSKELEVGQETKSRILVIKAAEDSALQYMNFMNVIFAA 177
Query: 171 QRSMVPIDSCYLGAQNSAFLQQ 192
Q+ + ID+C L + +S LQQ
Sbjct: 178 QKQNILIDACVLDS-DSGLLQQ 198
>gi|335775838|gb|AEH58705.1| general transcription factor IIH subunit-like protein [Equus
caballus]
Length = 302
Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 105/205 (51%), Gaps = 29/205 (14%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
D+++L+V+++DTNP +W +L SQ VL N+ L +N+ N++ VIA+ +
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQDAVMVLG--NSHLFMNRCNKLAVIASHIQESRF 62
Query: 70 VY---------------DSSSTGNQS-VGNGRMPSLCA---TLLQNLEEFMNKDEQLGKQ 110
+Y ++ S N S +G+ L A +++ +++ M K + G+
Sbjct: 63 LYPGKHGRLGDFFGDPGNAPSEFNPSGSKDGKYELLTAANEVIVEEIKDLMTKSDIKGQH 122
Query: 111 EPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIF 168
+LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+ MN IF
Sbjct: 123 TE------TLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDTALQYMNFMNVIF 176
Query: 169 SAQRSMVPIDSCYLGAQNSAFLQQC 193
+AQ+ + ID+C L + + Q C
Sbjct: 177 AAQKQNILIDACVLDSDSGLLQQAC 201
>gi|320582712|gb|EFW96929.1| Subunit of TFIIH complex [Ogataea parapolymorpha DL-1]
Length = 341
Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 110/206 (53%), Gaps = 20/206 (9%)
Query: 5 PSKLYSDDVSLVVVLLDTNPFFW----SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVV- 59
P KL + SL+ V++D NP W S+S Q ++ ++ LN+ L+LN N V +
Sbjct: 16 PHKLVDETPSLLAVVVDINPLEWRKLEKDRSVSLKQVVSSIIVMLNSHLSLNSSNHVALY 75
Query: 60 IATGYNSCD---YVYDSSSTGNQSVGNGRMPS----LCATLLQNLEEFMNKD-----EQL 107
+A Y+ Y SST + + M + +++ +E +N+ + +
Sbjct: 76 LANSYSHGAQLIYPLTESSTSTRFLHTPGMYRQFRFIDGSIVDKIEHLLNEQPDTLSQLI 135
Query: 108 GKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHP-QPRILCLQGSPDGPEQYVAIMNA 166
G+++ + I +L +G++SMALC+I ++ +S L+ + R+L + S D YV++MN
Sbjct: 136 GREQGKQHIKGTL-AGAMSMALCHINKIQQSDELNALKSRLLVVSISDDSTLPYVSVMNT 194
Query: 167 IFSAQRSMVPIDSCYLGAQNSAFLQQ 192
IF++Q+ + +D C LG +S FLQQ
Sbjct: 195 IFASQKMKISVDVCKLGP-SSTFLQQ 219
>gi|344297280|ref|XP_003420327.1| PREDICTED: general transcription factor IIH subunit 3-like
[Loxodonta africana]
Length = 309
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 100/212 (47%), Gaps = 36/212 (16%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQE------------- 111
+ ++Y NGR+ EF + GK E
Sbjct: 65 HESRFLYPGK--------NGRLGDFFGEASNPPSEFNPSGSKDGKYELLTAANEVIAEEI 116
Query: 112 --------PEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYV 161
+G+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+
Sbjct: 117 KDLMTKSDIKGQHMETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYM 176
Query: 162 AIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
MN IF+AQ+ + ID+C L + + Q C
Sbjct: 177 NFMNVIFAAQKQSILIDACVLDSDSGLLQQAC 208
>gi|57105536|ref|XP_534644.1| PREDICTED: general transcription factor IIH subunit 3 isoform 1
[Canis lupus familiaris]
Length = 308
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 105/206 (50%), Gaps = 25/206 (12%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVYDSSS---------TGNQSV------GNGRMPSLCATLLQNLEEFMNKDEQLGK 109
++Y + GN S +G+ A +EE KD + K
Sbjct: 65 QESRFLYPGKNGKLGDFFGDPGNPSEFSPSGSKDGKYELFTAANEVIVEEI--KDLMI-K 121
Query: 110 QEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAI 167
+ +G+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+ MN I
Sbjct: 122 SDIKGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNVI 181
Query: 168 FSAQRSMVPIDSCYLGAQNSAFLQQC 193
F+AQ+ + ID+C L + + Q C
Sbjct: 182 FAAQKQNILIDACVLDSDSGLLQQAC 207
>gi|355693898|gb|AER99489.1| proteinral transcription factor IIH, polypeptide 3, 34kDa [Mustela
putorius furo]
Length = 286
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 104/210 (49%), Gaps = 32/210 (15%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVYDSSS---------TGNQSV-------GNGRMPSLCA---TLLQNLEEFMNKDE 105
++Y + GN S +G+ A + + +++ M K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPSSEFSPSGSKDGKYELFTAANEVIAEEIKDLMTKSD 124
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAI 163
G+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+
Sbjct: 125 IKGQHTE------TLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNF 178
Query: 164 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
MN IF+AQ+ + ID+C L + + Q C
Sbjct: 179 MNVIFAAQKQNILIDACVLDSDSGLLQQAC 208
>gi|452838611|gb|EME40551.1| hypothetical protein DOTSEDRAFT_136966 [Dothistroma septosporum
NZE10]
Length = 379
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 108/247 (43%), Gaps = 72/247 (29%)
Query: 10 SDDVSLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
S+ SL+ ++LDTNP W+ SL S+ + +L F+NA L ++ N+V VIA+
Sbjct: 16 SEPPSLLTIILDTNPHAWALHEGSLPLSKAVASLLVFINAHLAIHYGNKVAVIASHAERA 75
Query: 68 DYVY--------DSSSTGNQSVGNG---------RMPS----------LCATLLQNLEEF 100
+++Y SS+T + +GNG R P + L NL +
Sbjct: 76 EFLYPAPATAKPHSSATDDVDMGNGDALVNGGPVRPPDDANKYRPFAHIEHALTHNLRDM 135
Query: 101 MNKDEQLGKQEPEGRIACSLLSGSLSMALCYI---------------------------- 132
M++ P ++L+G+L+MAL YI
Sbjct: 136 MDRTSPAALSTPS-----TMLAGALTMALTYISKQSAALPTANSSAQFNYSDPSAVAGGS 190
Query: 133 ------QRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQN 186
R GL + RIL L S D +QY++IMNAIF+ QR VPID L A +
Sbjct: 191 DLTADGSRKKHHGL---RSRILILSVSGDLADQYISIMNAIFACQRMSVPIDILKL-AGD 246
Query: 187 SAFLQQC 193
+ FLQQ
Sbjct: 247 TVFLQQA 253
>gi|1039318|emb|CAA82909.1| basic transcription factor 2, 35 kD subunit [Homo sapiens]
Length = 303
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 103/209 (49%), Gaps = 31/209 (14%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVYDSSS------------------TGNQSVGNGRMPSLCATLLQNLEEFMNKDEQ 106
++Y + +G++ + S +++ +++ M K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDI 124
Query: 107 LGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIM 164
G+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+ M
Sbjct: 125 KGQHTE------TLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFM 178
Query: 165 NAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
N IF+AQ+ + ID+C L + + Q C
Sbjct: 179 NVIFAAQKQNILIDACVLDSDSGLLQQAC 207
>gi|19923732|ref|NP_001507.2| general transcription factor IIH subunit 3 isoform a [Homo sapiens]
gi|50403772|sp|Q13889.2|TF2H3_HUMAN RecName: Full=General transcription factor IIH subunit 3; AltName:
Full=Basic transcription factor 2 34 kDa subunit;
Short=BTF2 p34; AltName: Full=General transcription
factor IIH polypeptide 3; AltName: Full=TFIIH basal
transcription factor complex p34 subunit
gi|23955948|gb|AAN40702.1| general transcription factor IIH, polypeptide 3, 34kDa [Homo
sapiens]
gi|40850955|gb|AAH65250.1| General transcription factor IIH, polypeptide 3, 34kDa [Homo
sapiens]
gi|119618832|gb|EAW98426.1| general transcription factor IIH, polypeptide 3, 34kDa, isoform
CRA_a [Homo sapiens]
gi|189053764|dbj|BAG36016.1| unnamed protein product [Homo sapiens]
gi|208966364|dbj|BAG73196.1| general transcription factor IIH, polypeptide 3, 34kDa [synthetic
construct]
Length = 308
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 103/209 (49%), Gaps = 31/209 (14%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVYDSSS------------------TGNQSVGNGRMPSLCATLLQNLEEFMNKDEQ 106
++Y + +G++ + S +++ +++ M K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDI 124
Query: 107 LGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIM 164
G+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+ M
Sbjct: 125 KGQHTE------TLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFM 178
Query: 165 NAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
N IF+AQ+ + ID+C L + + Q C
Sbjct: 179 NVIFAAQKQNILIDACVLDSDSGLLQQAC 207
>gi|355564808|gb|EHH21308.1| hypothetical protein EGK_04329, partial [Macaca mulatta]
gi|355786640|gb|EHH66823.1| hypothetical protein EGM_03880, partial [Macaca fascicularis]
Length = 308
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 102/209 (48%), Gaps = 31/209 (14%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVYDSSS------------------TGNQSVGNGRMPSLCATLLQNLEEFMNKDEQ 106
++Y + +G++ + S +++ +++ M K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDI 124
Query: 107 LGKQEPEGRIACSLLSGSLSMALCYIQRVFR--SGLLHPQPRILCLQGSPDGPEQYVAIM 164
G+ +LL+GSL+ ALCYI R+ + + RIL ++ + D QY+ M
Sbjct: 125 KGQHTE------TLLAGSLAKALCYIHRMNKEIKDNQEMKSRILVIKAAEDSALQYMNFM 178
Query: 165 NAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
N IF+AQ+ + ID+C L + + Q C
Sbjct: 179 NVIFAAQKQNILIDACVLDSDSGLLQQAC 207
>gi|402888055|ref|XP_003907392.1| PREDICTED: general transcription factor IIH subunit 3 isoform 1
[Papio anubis]
gi|426374588|ref|XP_004054152.1| PREDICTED: general transcription factor IIH subunit 3 isoform 1
[Gorilla gorilla gorilla]
gi|380784389|gb|AFE64070.1| general transcription factor IIH subunit 3 [Macaca mulatta]
gi|383417813|gb|AFH32120.1| general transcription factor IIH subunit 3 [Macaca mulatta]
gi|384946662|gb|AFI36936.1| general transcription factor IIH subunit 3 [Macaca mulatta]
Length = 308
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 102/209 (48%), Gaps = 31/209 (14%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVYDSSS------------------TGNQSVGNGRMPSLCATLLQNLEEFMNKDEQ 106
++Y + +G++ + S +++ +++ M K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDI 124
Query: 107 LGKQEPEGRIACSLLSGSLSMALCYIQRVFR--SGLLHPQPRILCLQGSPDGPEQYVAIM 164
G+ +LL+GSL+ ALCYI R+ + + RIL ++ + D QY+ M
Sbjct: 125 KGQHTE------TLLAGSLAKALCYIHRMNKEIKDNQEMKSRILVIKAAEDSALQYMNFM 178
Query: 165 NAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
N IF+AQ+ + ID+C L + + Q C
Sbjct: 179 NVIFAAQKQNILIDACVLDSDSGLLQQAC 207
>gi|452820306|gb|EME27350.1| transcription initiation factor TFIIH subunit H3 isoform 2
[Galdieria sulphuraria]
gi|452820307|gb|EME27351.1| transcription initiation factor TFIIH subunit H3 isoform 1
[Galdieria sulphuraria]
Length = 328
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 97/211 (45%), Gaps = 35/211 (16%)
Query: 10 SDDVSLVVVLLDTNP--------FFWSSSSLS--------FSQFLTHVLAFLNAILTLNQ 53
SD +L+ VLLD +P F S S+ S FL ++ FL+ L N
Sbjct: 33 SDKSNLLCVLLDLSPNLFDRLDKFVPSQSAKSVDLIEADALETFLLQLITFLHVFLLSNF 92
Query: 54 LNQVVVIATGYNSCDYVYDSSSTGNQSVGNG------------RMPSLCATLLQNLEEFM 101
N++V+I + VY+ S + R+ L + L+N+ F+
Sbjct: 93 ANRLVIIVYNEYNIHVVYEDKGLNTLSDPSNSASFLLTEERQERLTRLDSEFLKNVASFI 152
Query: 102 NKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYV 161
+ E G +LLS SLS ALCY+ R S + RILCL S D P+QY+
Sbjct: 153 -ESYPYNSCEENG----TLLSASLSFALCYLHRRILSE--RYEARILCLHASSDVPKQYI 205
Query: 162 AIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
+MN+IF AQR + ID C L + S+ LQQ
Sbjct: 206 GVMNSIFCAQRWSILIDVCNLHEEESSLLQQ 236
>gi|332254335|ref|XP_003276282.1| PREDICTED: general transcription factor IIH subunit 3 isoform 1
[Nomascus leucogenys]
Length = 308
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 102/209 (48%), Gaps = 31/209 (14%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVYDSSS------------------TGNQSVGNGRMPSLCATLLQNLEEFMNKDEQ 106
++Y + +G++ + S +++ +++ M K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKGDI 124
Query: 107 LGKQEPEGRIACSLLSGSLSMALCYIQRVFR--SGLLHPQPRILCLQGSPDGPEQYVAIM 164
G+ +LL+GSL+ ALCYI R+ + + RIL ++ + D QY+ M
Sbjct: 125 KGQHTE------TLLAGSLAKALCYIHRMNKEIKDNQEMKSRILVIKAAEDSALQYMNFM 178
Query: 165 NAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
N IF+AQ+ + ID+C L + + Q C
Sbjct: 179 NVIFAAQKQNILIDACVLDSDSGLLQQAC 207
>gi|34783458|gb|AAH39726.1| GTF2H3 protein, partial [Homo sapiens]
gi|34783739|gb|AAH47868.2| GTF2H3 protein, partial [Homo sapiens]
Length = 303
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 103/208 (49%), Gaps = 31/208 (14%)
Query: 11 DDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGYN 65
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 1 DELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQ 60
Query: 66 SCDYVYDSSS------------------TGNQSVGNGRMPSLCATLLQNLEEFMNKDEQL 107
++Y + +G++ + S +++ +++ M K +
Sbjct: 61 ESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDIK 120
Query: 108 GKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMN 165
G+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+ MN
Sbjct: 121 GQHTE------TLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMN 174
Query: 166 AIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
IF+AQ+ + ID+C L + + Q C
Sbjct: 175 VIFAAQKQNILIDACVLDSDSGLLQQAC 202
>gi|432095027|gb|ELK26416.1| General transcription factor IIH subunit 3, partial [Myotis
davidii]
Length = 277
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 104/209 (49%), Gaps = 40/209 (19%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNRLAVIASHI 64
Query: 65 NSCDYVYDSSS---------TGNQSV-------GNGRMPSLCA---TLLQNLEEFMNKDE 105
++Y + GN + +G+ L A +++ +++ M K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPASEYNPSGSKDGKYELLTAANEVIVEEIKDLMTKSD 124
Query: 106 QLGKQ-EPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIM 164
G+ EP LL+GSL+ ALCY Q + + RIL ++ + D QY+ M
Sbjct: 125 IKGQHTEP-------LLAGSLAKALCYNQEM--------KSRILVIKAAEDSALQYMNFM 169
Query: 165 NAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
N IF+AQ+ + ID+C L + + Q C
Sbjct: 170 NVIFAAQKQNILIDACVLDSDSGLLQQAC 198
>gi|298711517|emb|CBJ26605.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 223
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 99/207 (47%), Gaps = 33/207 (15%)
Query: 11 DDVSLVVVLLDTNPFFWSSSSL-----------------SFSQFLTHVLAFLNAILTLNQ 53
++ SL++++LD + FW+ SF + L F+ + L +++
Sbjct: 8 EEPSLLLIILDASSAFWTKREAVRRRQKERPESGEVKLSSFQDTVEATLMFVESYLMMHR 67
Query: 54 LNQVVVIATGYNSCDYVYDSSSTGNQ--SVGNGRMPS------LCATLLQNLEEFMNKDE 105
N+V +A ++ + + + ++G G + + L L + +E DE
Sbjct: 68 RNEVCFVACTARESTIIFPTPAMEREQRTLGRGSVSTKEFQDCLWDGLGRVVERGHAADE 127
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMN 165
G E C+L +GSLS LCYI R R Q R L L GSPD PE Y ++MN
Sbjct: 128 AGGGDE-----GCAL-AGSLSKGLCYINRKMRESS-SIQARALVLSGSPDVPETYNSVMN 180
Query: 166 AIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
AIFSAQ++ V +D LG ++S FLQQ
Sbjct: 181 AIFSAQKAGVLVDCAVLG-ESSTFLQQ 206
>gi|167773979|gb|ABZ92424.1| general transcription factor IIH, polypeptide 3, 34kDa [synthetic
construct]
Length = 308
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 103/209 (49%), Gaps = 31/209 (14%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDANPIWWGKQALQESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVYDSSS------------------TGNQSVGNGRMPSLCATLLQNLEEFMNKDEQ 106
++Y + +G++ + S +++ +++ M K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDI 124
Query: 107 LGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIM 164
G+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+ M
Sbjct: 125 KGQHTE------TLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFM 178
Query: 165 NAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
N IF+AQ+ + ID+C L + + Q C
Sbjct: 179 NVIFAAQKQNILIDACVLDSDSGLLQQAC 207
>gi|363739821|ref|XP_001235063.2| PREDICTED: general transcription factor IIH subunit 3 [Gallus
gallus]
Length = 307
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 105/208 (50%), Gaps = 31/208 (14%)
Query: 11 DDVSLVVVLLDTNPFFWSS-----SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
+++SL+V+++DTNP +W + + S+ + + N+ L +++ N++ +IA+
Sbjct: 5 EELSLLVIVIDTNPIWWGKRAQGEAEFTLSKCMDAAMVLGNSHLFMSRTNRLALIASHTQ 64
Query: 66 SCDYVY--------DSSSTGNQSV-------GNGRMPSLCA---TLLQNLEEFMNKDEQL 107
++Y D G SV +G+ L A + + +++ M K + +
Sbjct: 65 ESRFLYPGKRWASADLLGDGGNSVESNCSGSKDGKYELLTAINDAIAEEIKDLMTKTDMM 124
Query: 108 GKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMN 165
G+Q +LL+GSL+ ALCYI ++ + + + RIL ++ + D QY+ MN
Sbjct: 125 GQQTE------TLLAGSLAKALCYINKISKEVKANQEMKSRILVIKAAEDSALQYMNFMN 178
Query: 166 AIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
IF+AQ+ + ID+C L + + Q C
Sbjct: 179 VIFAAQKQSILIDACVLDSDSGLLQQAC 206
>gi|449279312|gb|EMC86947.1| General transcription factor IIH subunit 3, partial [Columba livia]
Length = 306
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 104/212 (49%), Gaps = 37/212 (17%)
Query: 11 DDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGYN 65
D++SL+VV++DTNP +W +L ++F + V+ N+ L +N+ N++ VIA+
Sbjct: 2 DELSLLVVVIDTNPIWWGKKALGEAEFTLSKCIDAVMVLGNSHLLMNRNNKLAVIASHTQ 61
Query: 66 SCDYVY------------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQL 107
++Y +S+ +G++ + ++ + + +++ M K E
Sbjct: 62 ESRFLYPGKRWAVADLFGDGGSSMESNCSGSRDGKYELLTAINDAIAEEIKDLMTKTEMK 121
Query: 108 GKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHP------QPRILCLQGSPDGPEQYV 161
G+Q + L+GSL+ ALC I + S P + RIL ++ + D QY+
Sbjct: 122 GQQTE------TQLAGSLAKALCCILLIVESS--KPLSNQEIKSRILVIKAAEDSALQYM 173
Query: 162 AIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
MN IF+AQ+ V ID+C L + + Q C
Sbjct: 174 NFMNVIFAAQKQSVLIDACVLESDSGLLQQAC 205
>gi|213409415|ref|XP_002175478.1| RNA polymerase II transcription factor B subunit 4
[Schizosaccharomyces japonicus yFS275]
gi|212003525|gb|EEB09185.1| RNA polymerase II transcription factor B subunit 4
[Schizosaccharomyces japonicus yFS275]
Length = 295
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 95/187 (50%), Gaps = 10/187 (5%)
Query: 11 DDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
D SL+VV+LD NP W S S+ L ++ F+NA L + N+V VIA+ +S +
Sbjct: 21 DTPSLLVVILDANPVSWYSLAQKAPISEILADIIVFINAHLAFHHENRVAVIASHTDSVE 80
Query: 69 YVYDSSSTGNQSVGNGRMPSLCATLLQNLEEF--MNKDEQLGKQEPEGRIAC-SLLSGSL 125
++Y ++ ++ P A + E M + E I+ +++SG+L
Sbjct: 81 FLYPTTKDNRKTKQVD--PEKDANTYRKFREVDDMVLEGMARLVESTNSISTKTMMSGAL 138
Query: 126 SMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQ 185
S AL YI R+ L + RIL S D QY++ MN IF AQ+ +PI+ C L ++
Sbjct: 139 SRALAYINRIQTESPL--RSRILIFSLSGDVALQYISTMNCIFCAQKKNIPINVCSL-SK 195
Query: 186 NSAFLQQ 192
+ FL+Q
Sbjct: 196 ETLFLEQ 202
>gi|296421687|ref|XP_002840396.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636611|emb|CAZ84587.1| unnamed protein product [Tuber melanosporum]
Length = 357
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 106/213 (49%), Gaps = 42/213 (19%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+V++LDTNP+ WS S++L + L +L FLN + + N+V VIA+ S ++Y
Sbjct: 19 SLLVLILDTNPYAWSTLSATLPLERALASILIFLNVHMAFSHANRVAVIASHTRSARFLY 78
Query: 72 DSSSTGN-------------QSVGNGRMPSLCATLLQ-NLEEFMNK---DEQLGKQEPEG 114
++++ + R L +Q + E M + E + +E
Sbjct: 79 PTTTSTTTAAGGSGGSEDPFRDANKYRQFRLIEDQVQASFAELMRQTTASELVDAKE--- 135
Query: 115 RIACSLLSGSLSMALCYIQRVFR----SGLLHPQ-----------PRILCLQGSPDGPEQ 159
++++G+L +AL Y+ R+ R G++ + RIL + S D EQ
Sbjct: 136 ----TMMAGALGLALGYVNRLVRVDDSGGVVGGKDGAVGEVTSMNARILVVSVSGDLAEQ 191
Query: 160 YVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
YV +MN+IF+AQR +PID C + + + FLQQ
Sbjct: 192 YVPVMNSIFAAQRKKIPIDICKVAGE-TVFLQQ 223
>gi|296213239|ref|XP_002753188.1| PREDICTED: general transcription factor IIH subunit 3 [Callithrix
jacchus]
Length = 309
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 20/204 (9%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+ +L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDEWNLLVIVVDANPIWWGKQALKESQFTLSKCMDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVY--DSSSTGNQSVGNGRMPSLCA---------TLLQNLEEFMNKD--EQLGKQE 111
++Y + G+ G PS LL + E + ++ + + K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPPSEFNPSGSKDGKYELLTSANEVIAEEIKDLMTKSD 124
Query: 112 PEGRIACSLLSGSLSMALCYIQRVFR--SGLLHPQPRILCLQGSPDGPEQYVAIMNAIFS 169
+G+ +LL+GSL+ ALCYI R+ + + RIL ++ + D QY+ MN IF+
Sbjct: 125 IKGQHTETLLAGSLAKALCYIHRMNKEIKDNQEMKSRILVIKAAEDSALQYMNFMNVIFA 184
Query: 170 AQRSMVPIDSCYLGAQNSAFLQQC 193
AQ+ + ID+C L + + Q C
Sbjct: 185 AQKQNILIDACVLDSDSGLLQQAC 208
>gi|395332939|gb|EJF65317.1| transcription factor Tfb4 [Dichomitus squalens LYAD-421 SS1]
Length = 324
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 92/206 (44%), Gaps = 30/206 (14%)
Query: 11 DDVSLVVVLLDTNPFFWS-------SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
D S + V++D +P W+ L FL+ +LAFLNA + N + V
Sbjct: 2 DKPSHLSVIVDLSPTQWALCAQSTAPPGLHLQTFLSQLLAFLNAHIACKDENTLAVFGAF 61
Query: 64 YNSCDYVYDSS-----STGNQSVGNGRMP--SLCATLLQNLEEFMNKDEQLGKQEPEGRI 116
+Y S+ +T + N P +L +T++ ++ E N + ++EP G +
Sbjct: 62 PGQSVMLYSSTGEIMTATTEATDPNTYRPFKTLDSTVMSSIAERFNSYDVTEEEEPIGLV 121
Query: 117 ACSLLSGSLSMALCYIQRVF----------RSGLLHPQPRILCLQGSPDGPEQYVAIMNA 166
C L+ ALCYI R + PRIL L SPD Y+ IMN+
Sbjct: 122 GC------LTKALCYINRTISVVSASAQGTEGATISIDPRILVLSVSPDQSSTYIPIMNS 175
Query: 167 IFSAQRSMVPIDSCYLGAQNSAFLQQ 192
IFSAQ+ V ID C + + FLQQ
Sbjct: 176 IFSAQKLKVTIDVCKVFGAENVFLQQ 201
>gi|393217355|gb|EJD02844.1| Tfb4-domain-containing protein [Fomitiporia mediterranea MF3/22]
Length = 378
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 95/206 (46%), Gaps = 30/206 (14%)
Query: 11 DDVSLVVVLLDTNPFFWSSSSL-------SFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
D S + ++LD +P W SSL SF FL LAFLN+ L L N + V
Sbjct: 2 DRPSHLAIILDLSPTQWHLSSLPKNAYPLSFKSFLAQTLAFLNSHLALKHENTLAVYGAF 61
Query: 64 YNSCDYVYDSSSTGNQSVG------NGRMP--SLCATLLQNLEEFMNKDEQLGKQEPEGR 115
+Y S + V N +P + + + + E ++ ++ P
Sbjct: 62 PGKSVLLYSSMDHKPEGVDDSIADPNTYLPFKVVDTAVTKRISEELDAMSDFDEEAP--- 118
Query: 116 IACSLLSGSLSMALCYIQRVFRS---------GLLHPQPRILCLQGSPDGPEQYVAIMNA 166
C L+ G+L+ ALC+I R+ ++ P+PRI+ L SPD Y+ +MN+
Sbjct: 119 --CQLV-GALTKALCHINRLVNPTATSIDSDVPVVPPEPRIVILSVSPDLSTSYIPLMNS 175
Query: 167 IFSAQRSMVPIDSCYLGAQNSAFLQQ 192
IFSAQ+ V ID C + ++ FLQQ
Sbjct: 176 IFSAQKLKVAIDVCKIYGPDAVFLQQ 201
>gi|50286117|ref|XP_445487.1| hypothetical protein [Candida glabrata CBS 138]
gi|62901307|sp|Q6FWA7.1|TFB4_CANGA RecName: Full=RNA polymerase II transcription factor B subunit 4;
AltName: Full=RNA polymerase II transcription factor B
34 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p34 subunit
gi|49524792|emb|CAG58398.1| unnamed protein product [Candida glabrata]
Length = 335
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 100/207 (48%), Gaps = 26/207 (12%)
Query: 10 SDDV-SLVVVLLDTNPFFW------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIAT 62
++D+ SL+ V+LD +P W S S + L ++ FLN+ L N NQV VIA
Sbjct: 19 TEDIPSLLTVVLDISPRLWAEFDHRSGEKQSVTTVLKSLIVFLNSHLAFNSANQVAVIAA 78
Query: 63 GYNSCDYVY-DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGK------QEPEGR 115
Y+Y SS T Q+ GN + S+ ++ + F N DE L + Q E
Sbjct: 79 FSQGIQYLYPRSSDTSEQNAGNSKDLSIISSHM--YRRFRNVDETLIEEFYKLYQREESL 136
Query: 116 I----ACSLLSGSLSMALCYIQRV---FRSGLLHPQPRILCLQGSPDGPE--QYVAIMNA 166
I S LSG+++ AL Y R+ F S L + ++ S + E QY+ IMN
Sbjct: 137 IDKPVQKSTLSGAMAAALTYTNRLTKEFESISLRSRLLVITCGSSREKDEIFQYIPIMNC 196
Query: 167 IFSAQRSMVPIDSCYLGA-QNSAFLQQ 192
IFSA + PID +G + S FLQQ
Sbjct: 197 IFSATKLKCPIDVIKIGGNKQSTFLQQ 223
>gi|390602568|gb|EIN11961.1| transcription factor Tfb4 [Punctularia strigosozonata HHB-11173
SS5]
Length = 338
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 95/193 (49%), Gaps = 19/193 (9%)
Query: 12 DVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA-----TG--Y 64
D+S LL P + LS FL+ +LAFLN+ + N + V+ +G Y
Sbjct: 12 DLSPPQWLLSAQPGPSNPHPLSLRSFLSQLLAFLNSHIASKPENTLCVLGAFPGKSGILY 71
Query: 65 NSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGS 124
+S D+V SS G+ + +P ++ N+ + LG+ E + A L G+
Sbjct: 72 SSTDHVSTSSEKGDP---DAYLP-FKVVDAAIIDHITNELDVLGEWEAQESTA---LVGA 124
Query: 125 LSMALCYIQRVFR-SGLLHP----QPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDS 179
L+ ALCYI R+ S P +PRIL L SPD Y+ IMN+IFSAQ+ V +D
Sbjct: 125 LTKALCYINRIMNVSADNEPRSPSEPRILILSVSPDQSTSYIPIMNSIFSAQKLKVTMDV 184
Query: 180 CYLGAQNSAFLQQ 192
C L S FLQQ
Sbjct: 185 CQLYGPESVFLQQ 197
>gi|392570135|gb|EIW63308.1| transcription factor Tfb4 [Trametes versicolor FP-101664 SS1]
Length = 329
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 96/206 (46%), Gaps = 30/206 (14%)
Query: 11 DDVSLVVVLLDTNPFFWSSSS-------LSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
D S + V+LD +P W+ S+ +S FL+ +LAFLNA + N + V
Sbjct: 2 DTPSHLSVILDLSPTQWALSAQSTNPPGISLETFLSQLLAFLNAHIACKDENTLAVFGAL 61
Query: 64 YNSCDYVYDSS-----STGNQSVGNGRMP--SLCATLLQNLEEFMNKDEQLGKQEPEGRI 116
+Y S+ S + N P +L AT++++L E + ++ P G +
Sbjct: 62 PGESVLLYSSTGEVTASDDGPTDSNTYRPFKTLDATVMKSLAERLESFGDAAEEAPIGIV 121
Query: 117 ACSLLSGSLSMALCYIQRVF-RSGLLHP---------QPRILCLQGSPDGPEQYVAIMNA 166
C ++ ALCYI R+ + P PRIL L SPD Y+ IMN+
Sbjct: 122 GC------MTKALCYINRITSNTTAAGPNEDGPTASIDPRILVLSVSPDQSSTYIPIMNS 175
Query: 167 IFSAQRSMVPIDSCYLGAQNSAFLQQ 192
IFSAQ+ V ID C + ++ FLQQ
Sbjct: 176 IFSAQKLKVTIDVCKIFGADNVFLQQ 201
>gi|254580699|ref|XP_002496335.1| ZYRO0C16016p [Zygosaccharomyces rouxii]
gi|238939226|emb|CAR27402.1| ZYRO0C16016p [Zygosaccharomyces rouxii]
Length = 342
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 97/209 (46%), Gaps = 24/209 (11%)
Query: 6 SKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQ------FLTHVLAFLNAILTLNQLNQVVV 59
S L + SL+ V++DT P W+ +Q L +L FLNA L N NQV V
Sbjct: 37 SHLAEETPSLLTVIVDTAPRLWAELDNERNQTGKIIDMLKSLLVFLNAHLAFNSSNQVAV 96
Query: 60 IATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDE----------QLGK 109
IA Y+Y SS+ + G+ S+ + +F N DE Q K
Sbjct: 97 IAAHSQGIKYLYPKSSSNQSNSLKGKDLSIINNDM--YRQFRNVDETLVEELYGLFQQEK 154
Query: 110 QEPEGRIACSLLSGSLSMALCYIQRVFRS-GLLHPQPRILCLQ----GSPDGPEQYVAIM 164
++ + S L+G++S L Y+ RV + + + R+L + G D QY+ IM
Sbjct: 155 EQADEVTQKSTLAGAMSAGLTYVNRVSKELETISFKSRLLVVTCGSGGGRDEIFQYIPIM 214
Query: 165 NAIFSAQRSMVPIDSCYL-GAQNSAFLQQ 192
N IFSA + PID + G++ S FLQQ
Sbjct: 215 NCIFSATKLKCPIDVVKIGGSKESTFLQQ 243
>gi|322795304|gb|EFZ18109.1| hypothetical protein SINV_08150 [Solenopsis invicta]
Length = 322
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 94/194 (48%), Gaps = 22/194 (11%)
Query: 12 DVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
+ SL+V++ D NP + SQ L + F NA L + N++ ++A +S +
Sbjct: 4 ETSLLVIVFDVNPMQRIVKQETKILSQCLDSTIVFANAHLMQSSNNELAIMACHSHSARF 63
Query: 70 VYDSSSTGNQSVGNGRMPSLC---ATLLQNLEEFMNK---DEQLGKQEPEGRIACSLLSG 123
+Y + +G+ T+ Q L++F+N+ D L + SL+SG
Sbjct: 64 LYPCENAVEIRQMDGQYEKFTMVERTVRQQLQQFINEIPMDAPLNTE--------SLISG 115
Query: 124 SLSMALCYIQRVFRSGL----LHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDS 179
+LSMALCYI R+ R + LHP RIL + S D QY+ MN F+AQR V +D
Sbjct: 116 ALSMALCYIARLEREKVAGQKLHP--RILVITASNDSATQYMNYMNIFFTAQRMNVILDV 173
Query: 180 CYLGAQNSAFLQQC 193
C L + + Q C
Sbjct: 174 CSLDQELTLLQQGC 187
>gi|403163144|ref|XP_003323260.2| hypothetical protein PGTG_04797 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375163932|gb|EFP78841.2| hypothetical protein PGTG_04797 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 322
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 89/208 (42%), Gaps = 34/208 (16%)
Query: 11 DDVSLVVVLLDTNPFFWS--------SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIAT 62
D L+ V+LD NP W+ + S + L F N+ L L N + V
Sbjct: 7 DPADLLTVILDLNPLAWADLESGESQEETTSLVSVIESFLIFANSHLALRHENAIAVYGA 66
Query: 63 GYNSCDYVYDS------SSTGNQSVGNGRMPSL---------CATLLQNLEEFMNKDEQL 107
S + +Y S ++ +Q G+ + A+ ++ L
Sbjct: 67 SLGSSELLYSSLQAKPITTKSSQPSGSRDANTYQSFRILNDSIASGVKQLATLTQSSSMT 126
Query: 108 GKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ---PRILCLQGSPDGPEQYVAIM 164
GKQ + +L+ ALC+I R+ R + RIL L S D P QY+ +M
Sbjct: 127 GKQPG--------IVKALAKALCHINRLARENENKKESLKARILILSVSSDAPGQYIPMM 178
Query: 165 NAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
N IFSAQ+S +PID C + +N+ FLQQ
Sbjct: 179 NCIFSAQKSTIPIDVCKISKENAVFLQQ 206
>gi|332375937|gb|AEE63109.1| unknown [Dendroctonus ponderosae]
Length = 300
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 98/197 (49%), Gaps = 16/197 (8%)
Query: 5 PSKLYSDDVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIAT 62
P +D++SL+VV+LDTNP + + V+AF N+ L N++ V+A
Sbjct: 12 PEITSADEISLLVVILDTNPTQKMLRDKQNQLTNIVDSVVAFSNSHLMQKAQNKLAVMAC 71
Query: 63 GYNSCDYVYDSSSTG-NQSVGNGRMPSLC---ATLLQNLEEFMNKDEQLGKQEPEGRIAC 118
+ ++Y + + +G+ + T+ QNL E + + E
Sbjct: 72 HSKTSQFIYPGAKKPLDVRQVDGQYEAFLLVEKTVKQNLAELLASESSTAVTE------- 124
Query: 119 SLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVP 176
SLL+G+++MALCYI R+ R+ + RIL + GS D QY+ MN F+AQ+ V
Sbjct: 125 SLLAGAIAMALCYIARLQRTKPPGSKLNSRILVVSGSGDSASQYMNYMNVFFTAQKLNVV 184
Query: 177 IDSCYLGAQNSAFLQQC 193
+D C L Q+ + LQQC
Sbjct: 185 LDVCALD-QHLSLLQQC 200
>gi|302680643|ref|XP_003030003.1| hypothetical protein SCHCODRAFT_30664 [Schizophyllum commune H4-8]
gi|300103694|gb|EFI95100.1| hypothetical protein SCHCODRAFT_30664 [Schizophyllum commune H4-8]
Length = 257
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 90/195 (46%), Gaps = 28/195 (14%)
Query: 18 VLLDTNPFFW---SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS-CDYVYDS 73
V+LD N W S+ LS + L +L FL+A + N + V G + +DS
Sbjct: 3 VILDLNAHQWTQLSTEELSLANALPQLLVFLHAHIAAAAENTLAVYTAGSEGPTELAFDS 62
Query: 74 SST---------GNQSVGNGRMP-SLCATLLQNLEEFMNKDEQLGK-----QEPEGRIAC 118
S GN+ R+ SL + ++ + DE + + +P
Sbjct: 63 LSNDVELPGALDGNKYPPFRRLDVSLTDAIQAAMDRLADADEDMKRTVGTSSDPHA---- 118
Query: 119 SLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPID 178
+ + +L+ +LCYI R L P RIL L SPD + YV MNAIFSAQ+ VPID
Sbjct: 119 TSFTSALTRSLCYINR-----LQSPSSRILLLSVSPDRAQDYVPFMNAIFSAQKLKVPID 173
Query: 179 SCYLGAQNSAFLQQC 193
+ L A +S FLQQ
Sbjct: 174 TLQLAAHDSVFLQQA 188
>gi|255715715|ref|XP_002554139.1| KLTH0E15180p [Lachancea thermotolerans]
gi|238935521|emb|CAR23702.1| KLTH0E15180p [Lachancea thermotolerans CBS 6340]
Length = 337
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 95/204 (46%), Gaps = 28/204 (13%)
Query: 14 SLVVVLLDTNPFFW------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
SL+ V++DT P W S + L ++ FLN+ LT N NQV VIA +
Sbjct: 24 SLLTVVVDTTPKAWAELDRESEHEGNLISALQSLIVFLNSHLTFNSANQVAVIAAHSSGI 83
Query: 68 DYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQL-----------GKQEPEGRI 116
Y+Y +ST +Q R L +F N DE + GK+E
Sbjct: 84 KYLYPVTST-SQDETAARSADLSIINSDMYRQFRNVDETVLEELYKLLQEEGKREQPSGF 142
Query: 117 ACSLLSGSLSMALCYIQRVFR---SGLLHPQPRILCLQ-GSPDGPE---QYVAIMNAIFS 169
S LSG++S YI R+ + S L + R++ + GS G + QY+ IMN IFS
Sbjct: 143 QKSTLSGAMSAGFTYINRIIKEQSSASL--KARLMVVTCGSSGGKDEVFQYIPIMNCIFS 200
Query: 170 AQRSMVPIDSCYL-GAQNSAFLQQ 192
A + P+D + G+Q S FLQQ
Sbjct: 201 ATKLKCPVDVVKIGGSQESTFLQQ 224
>gi|357629722|gb|EHJ78327.1| putative transcription factor TFIIH-subunit [Danaus plexippus]
Length = 282
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 105/235 (44%), Gaps = 29/235 (12%)
Query: 3 SAPSKLYSDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
APS D SL+V+++DTNP + + + L V+AF N+ L NQ+ VI
Sbjct: 5 EAPS-----DSSLLVIIVDTNPNQRYITEDPKVLTGCLDAVIAFANSHLMQKSRNQLAVI 59
Query: 61 ATGYNSCDYVYDSSSTG---NQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIA 117
++ +Y+Y S Q G + +L ++ M + Q E R
Sbjct: 60 GCHFHKSEYLYPSPGKPLDVRQIDGQYELFTLVEKTIK-----MRLVNLIKSQPQEERPG 114
Query: 118 CSLLSGSLSMALCYIQRVFRSGL--LHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMV 175
SLL+G+++M LC+I R+ R L R+L + GS D QY+ MN F+AQ+ V
Sbjct: 115 ESLLAGAMAMGLCFIARMRREQPPGLRMVSRMLVVTGSSDTAAQYINYMNVFFTAQKQQV 174
Query: 176 PIDSCYLGAQNSAFLQQC------------MSDRLLTLLVEYIISLNNWMGSFNI 218
+D C L S Q C + L LLV Y + + W+ +++
Sbjct: 175 LLDVCSLDKHLSLLQQGCDITGGLYLKVPSLEGLLQYLLVIYAMKVLTWIRLYSV 229
>gi|195575703|ref|XP_002077716.1| GD22925 [Drosophila simulans]
gi|194189725|gb|EDX03301.1| GD22925 [Drosophila simulans]
Length = 299
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 100/199 (50%), Gaps = 20/199 (10%)
Query: 6 SKLYSDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
SK + L+V++LDTNP F + + +Q L V+AF NA L N++ V++
Sbjct: 8 SKEAESCIDLLVIVLDTNPSQHFVRQNPQNLTQILEAVIAFGNAHLMQKAQNKLAVVSCS 67
Query: 64 YNSCDYVYDSSSTGNQ-SVGNGRMPSLCATLLQNLEEFMNKDEQLGK---QEPEGRIAC- 118
+++ +++Y + +G+ + NL E K +QLG P C
Sbjct: 68 HHATNFLYPLPRRQVELRQMDGQYEAF------NLVEKTVK-QQLGSILMNAPRLSAPCE 120
Query: 119 SLLSGSLSMALCYIQRVFRSGLLHP----QPRILCLQGSPDGPEQYVAIMNAIFSAQRSM 174
SLL+GS+SMALCYI R+ R+ L P RIL L GS + QY+ MN F+AQ+
Sbjct: 121 SLLAGSMSMALCYISRLQRN--LAPGVKMHSRILVLTGSNECASQYMTFMNVFFTAQKLG 178
Query: 175 VPIDSCYLGAQNSAFLQQC 193
+ ID+C L S Q C
Sbjct: 179 ITIDTCALDKTLSLLQQGC 197
>gi|170028289|ref|XP_001842028.1| TFIIH basal transcription factor complex p34 subunit [Culex
quinquefasciatus]
gi|167874183|gb|EDS37566.1| TFIIH basal transcription factor complex p34 subunit [Culex
quinquefasciatus]
Length = 292
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 95/192 (49%), Gaps = 14/192 (7%)
Query: 10 SDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
++D SL+V++LDTNP + +Q L ++ F NA L N++ V+A +++
Sbjct: 4 NNDTSLLVIVLDTNPSQRIIRENPHHLTQCLDSIVGFANAHLMQKAHNKLAVLACHHHAT 63
Query: 68 DYVYDSSSTG---NQSVGNGRMPSLC-ATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSG 123
+++Y + Q G +L T+ Q L +N+ +L SLL+G
Sbjct: 64 EFLYPNPGKPLDIRQVDGQYEQFTLVEKTIKQKLARMINEAPRLAAPTE------SLLAG 117
Query: 124 SLSMALCYIQRVFRS--GLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCY 181
S++MALCYI R+ R+ + RIL + GS + QY+ MN F+AQ+ V +D C
Sbjct: 118 SMAMALCYIARINRNKPAGVKINSRILVVTGSNECASQYMTYMNVFFTAQKQNVTLDVCA 177
Query: 182 LGAQNSAFLQQC 193
L S Q C
Sbjct: 178 LDKPLSLLQQGC 189
>gi|406863689|gb|EKD16736.1| hypothetical protein MBM_05205 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 357
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 105/214 (49%), Gaps = 36/214 (16%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
+L+VV++DTNP W+ S +L S+ + ++L F+NA L +N NQV ++A+ + ++Y
Sbjct: 20 ALLVVVIDTNPHAWALLSPTLPLSKAIANILVFINAHLAVNNANQVAIVASHCHRAAWLY 79
Query: 72 DSSSTGNQSVGNGRMPSLCATLLQNLEEF----------MNKDEQLGKQEPEGRIACSL- 120
++ + S ++ + N ++ +N +L E +A +
Sbjct: 80 PHPASTSSSEDVEMSDDAASSNIDNPNKYRPFALVEDILLNSLRELIATTTESDVATTTS 139
Query: 121 --LSGSLSMALCYIQRVFR--SGL------------------LHPQPRILCLQGSPDGPE 158
++G+L++AL YI + + SG+ L Q RIL + S D
Sbjct: 140 TQMAGALTLALSYIHKATQQFSGIDTESKPATAPSTENADTILGLQSRILVVSVSGDLAH 199
Query: 159 QYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
QY+ IMN F+AQR +PID L A ++ FLQQ
Sbjct: 200 QYIPIMNTTFAAQRLRIPIDILKL-AGDTVFLQQ 232
>gi|241605964|ref|XP_002405599.1| RNA polymerase II transcription initiation factor, putative [Ixodes
scapularis]
gi|215500649|gb|EEC10143.1| RNA polymerase II transcription initiation factor, putative [Ixodes
scapularis]
Length = 291
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 97/195 (49%), Gaps = 18/195 (9%)
Query: 8 LYSDDVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
L D+ SL+V ++DTNP S S+ L + F N+ L LN N++ +IA+ +
Sbjct: 1 LAEDEGSLLVAIIDTNPCASLLESDQGIVSKLLDALSVFCNSHLMLNPCNKLAIIASHSH 60
Query: 66 SCDYVY---DSSSTGNQSVGNGR---MPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACS 119
++Y SS+ SV +G+ + + ++E + D+ E S
Sbjct: 61 KSTFIYPKPQESSSDTYSV-DGQYELFTEVTGAIKDGVKELVLSDDS------ESAAGES 113
Query: 120 LLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPI 177
LL+G LS+ALCYI R+ + + RIL L S + QY+ MN F+AQ+ V I
Sbjct: 114 LLTGGLSLALCYINRIEKESSSQNKIASRILVLSASGESASQYLNFMNVFFTAQKKNVII 173
Query: 178 DSCYLGAQNSAFLQQ 192
D+C L ++S LQQ
Sbjct: 174 DACVL-EKDSGLLQQ 187
>gi|358389021|gb|EHK26614.1| hypothetical protein TRIVIDRAFT_69532 [Trichoderma virens Gv29-8]
Length = 363
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 105/220 (47%), Gaps = 43/220 (19%)
Query: 14 SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W++ SSLS +Q ++++L F+NA L + NQV VIA N ++Y
Sbjct: 20 SLLSIVLDTNPRAWAALDSSLSLAQAISNILVFVNAHLAFSNTNQVAVIAAHVNRAVWLY 79
Query: 72 ------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQE-----------PEG 114
+++T + G+ +M + A + NK Q + E E
Sbjct: 80 PAPQNPSATTTTKDNSGDVQMQDVSAE-TNSSSASANKYPQFAQIESSVFSSIQTLMAET 138
Query: 115 RI-----ACSLLSGSLSMALCYIQRVFRS--------------GLLHPQP---RILCLQG 152
+ + LSG+L++ALC I + +S P P RI+ +
Sbjct: 139 TVQDLDQVTTQLSGALTLALCRINKTAQSLSSSDTTISNAAPVNSTAPPPVKGRIVVISV 198
Query: 153 SPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
S P QY+ MNA+F+A + V ID+ L A +S FLQQ
Sbjct: 199 SDSEPSQYIPTMNAVFAAAHNQVAIDTIAL-AGDSTFLQQ 237
>gi|380477141|emb|CCF44315.1| RNA polymerase II transcription factor B subunit 4 [Colletotrichum
higginsianum]
Length = 255
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 100/224 (44%), Gaps = 50/224 (22%)
Query: 14 SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ +++DTNP W++ L S+ + +VL F+NA L + NQV + A+ N ++Y
Sbjct: 20 SLLSIVIDTNPRAWAALNDVLPLSKAIANVLVFVNAHLAFSNANQVAIFASHSNRAVWLY 79
Query: 72 ----------------DSSSTG--------NQSVGNGRMPSLCATLLQNLEEFMNKDEQL 107
D + TG NQS N + P Q M+ +L
Sbjct: 80 PAKPEPATANGAAASEDVAMTGVDAFAPTPNQSSAN-KFPQFA----QIESAVMSSMRKL 134
Query: 108 GKQEPEGRIACSL--LSGSLSMALCYIQ----------------RVFRSGLLHPQPRILC 149
E +AC+ LSG+L++AL +I R S L + RI
Sbjct: 135 VDATTEAXLACTTTQLSGALTLALAHINKTSLSLNETNKAPDVPRSTSSALSRLRARIFI 194
Query: 150 LQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
L S P QY++ MNA+F+A S +PID+ L ++ FLQQ
Sbjct: 195 LSVSDSEPVQYISTMNAVFAAAHSQIPIDTLALSG-DATFLQQA 237
>gi|24580793|ref|NP_608574.2| Tfb4 [Drosophila melanogaster]
gi|22945518|gb|AAF51411.2| Tfb4 [Drosophila melanogaster]
gi|94400646|gb|ABF17925.1| FI01003p [Drosophila melanogaster]
Length = 299
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 101/201 (50%), Gaps = 20/201 (9%)
Query: 4 APSKLYSDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
A SK + L+V++LDTNP F + + +Q L V+AF NA L N++ V++
Sbjct: 6 AASKEAESCIDLLVIVLDTNPSQHFVRQNPQNLTQILEAVIAFGNAHLMQKAQNKLAVVS 65
Query: 62 TGYNSCDYVYDSSSTGNQ-SVGNGRMPSLCATLLQNLEEFMNKDEQLGK---QEPEGRIA 117
+++ +++Y + +G+ + NL E K +QLG P
Sbjct: 66 CSHHATNFLYPLPRRQVELRQVDGQYEAF------NLVEKTVK-QQLGSILMNAPRLSAP 118
Query: 118 C-SLLSGSLSMALCYIQRVFRSGLLHP----QPRILCLQGSPDGPEQYVAIMNAIFSAQR 172
C SLL+GS+SMALCYI R+ R+ L P RIL + GS + QY+ MN F+AQ+
Sbjct: 119 CESLLAGSMSMALCYISRLQRN--LAPGVKMHSRILVVTGSNECASQYMTFMNVFFTAQK 176
Query: 173 SMVPIDSCYLGAQNSAFLQQC 193
+ ID+C L S Q C
Sbjct: 177 LGITIDTCALDKTLSLLQQGC 197
>gi|195350283|ref|XP_002041670.1| GM16625 [Drosophila sechellia]
gi|194123443|gb|EDW45486.1| GM16625 [Drosophila sechellia]
Length = 299
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 98/192 (51%), Gaps = 20/192 (10%)
Query: 13 VSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYV 70
+ L+V++LDTNP F + + +Q L V+AF NA L N++ V++ +++ +++
Sbjct: 15 IDLLVIVLDTNPSQHFVRQNPQNLTQILEAVIAFGNAHLMQKAQNKLAVVSCSHHATNFL 74
Query: 71 YDSSSTGNQ-SVGNGRMPSLCATLLQNLEEFMNKDEQLGK---QEPEGRIAC-SLLSGSL 125
Y + +G+ + NL E K +QLG P C SLL+GS+
Sbjct: 75 YPLPRRQVELRQMDGQYEAF------NLVEKTVK-QQLGSILMNAPRLSAPCESLLAGSM 127
Query: 126 SMALCYIQRVFRSGLLHP----QPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCY 181
SMALCYI R+ R+ L P RIL L GS + QY+ MN F+AQ+ + ID+C
Sbjct: 128 SMALCYISRLQRN--LAPGVKMHSRILVLTGSNECASQYMTFMNVFFTAQKLGITIDTCA 185
Query: 182 LGAQNSAFLQQC 193
L S Q C
Sbjct: 186 LDKTLSLLQQGC 197
>gi|429851889|gb|ELA27048.1| transcription factor tfiih subunit [Colletotrichum gloeosporioides
Nara gc5]
Length = 362
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 97/216 (44%), Gaps = 38/216 (17%)
Query: 14 SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ +++DTNP W++ L S+ + +L F+NA L + NQV +IA+ N ++Y
Sbjct: 20 SLLSIVIDTNPRAWAALNDVLPLSKAIASILVFVNAHLAFSNANQVAIIASHSNRAVWLY 79
Query: 72 DSSSTGNQSVGNGR----------MPSLCATLLQNLEEFMNKDE-------QLGKQEPEG 114
+ + NG P+ + +F ++ ++ Q E
Sbjct: 80 PTKPEPKAASTNGASEDVDMADAFAPTPNKSNANKYPQFAQIEKAVLGAIREVINQTTEA 139
Query: 115 RIACSL--LSGSLSMALCYIQ----------------RVFRSGLLHPQPRILCLQGSPDG 156
++C+ LSG+L++AL YI R S L RI L S
Sbjct: 140 DLSCTTTQLSGALTLALSYINKASMALNETNKTPEATRATSSALTRLHARIFILSVSDSE 199
Query: 157 PEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
P QY+ MNA+F+A S +PID+ L ++ FLQQ
Sbjct: 200 PVQYIPTMNAVFAAAHSQIPIDTLALSG-DATFLQQ 234
>gi|365982181|ref|XP_003667924.1| hypothetical protein NDAI_0A05260 [Naumovozyma dairenensis CBS 421]
gi|343766690|emb|CCD22681.1| hypothetical protein NDAI_0A05260 [Naumovozyma dairenensis CBS 421]
Length = 339
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 93/210 (44%), Gaps = 23/210 (10%)
Query: 6 SKLYSDDVSLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLNQVVV 59
S L + SL+ V++D P W+ + S L ++ FLNA L N NQV V
Sbjct: 16 SSLSEETPSLLTVIIDITPKLWTELDQETEENGSLISVLKSLIVFLNAHLAFNSSNQVAV 75
Query: 60 IATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQL----------GK 109
IA+ Y+Y ++ G+ + + L F N DE L +
Sbjct: 76 IASHSQGIKYLYPQNTKGSDEESSSKTKDLSIINKDMYRRFRNVDETLVEELYTLFEKER 135
Query: 110 QEPEGRIACSLLSGSLSMALCYIQRVFRS-GLLHPQPRILCLQ-----GSPDGPEQYVAI 163
+ + S LSG++S L YI R+ R + + R++ L S D QY+ I
Sbjct: 136 DQIDKFKQKSTLSGAMSAGLTYINRLSRELEAISLKSRLMVLTCGGKGESKDEIFQYIPI 195
Query: 164 MNAIFSAQRSMVPIDSCYL-GAQNSAFLQQ 192
MN IFSA + PID + G++ S FLQQ
Sbjct: 196 MNCIFSANKIKCPIDVVKIGGSERSTFLQQ 225
>gi|342873217|gb|EGU75428.1| hypothetical protein FOXB_14053 [Fusarium oxysporum Fo5176]
Length = 358
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 105/219 (47%), Gaps = 47/219 (21%)
Query: 14 SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ V+LDTNP W+S + L S+ + ++L F+NA L + NQV +IA + +++Y
Sbjct: 20 SLLTVVLDTNPRAWASLNNVLPLSRAIANILVFVNAHLAFSNANQVALIAAHVDRAEWLY 79
Query: 72 -----------------DSSSTGNQSVGNGRMPSLC---ATLLQNLEEFMNKDEQLGKQE 111
D+S T Q+ N + P A +L + + M++ +E
Sbjct: 80 PTPPKPSRDASGDVAMNDASQTQTQTSAN-KFPQFAQIEAAVLAAIRKLMDQ-----TKE 133
Query: 112 PEGRIACSLLSGSLSMALCYIQRVFRS-------------GLLHPQP-----RILCLQGS 153
+ + +SG+L++ALC+I + ++ G + P RIL + S
Sbjct: 134 EDLSATTTQISGALTLALCHINKAAQALCAPTANLEDSHKGSSNTAPPTVRGRILVISVS 193
Query: 154 PDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
P QY+ MNA+F+A + V ID+ L + + FLQQ
Sbjct: 194 DSEPSQYIPTMNAVFAAGHTQVAIDTLSLTGEPT-FLQQ 231
>gi|225707288|gb|ACO09490.1| TFIIH basal transcription factor complex p34 subunit [Osmerus
mordax]
Length = 208
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 91/191 (47%), Gaps = 25/191 (13%)
Query: 23 NPFFWSSSS-----LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY------ 71
NP +W + + S+ L V+ N+ L + + N++ +IA+ ++Y
Sbjct: 17 NPLWWGQQAQKDPEFTLSKCLDAVMVMGNSHLVMTRTNKLAIIASHCQESHFLYPSKHWK 76
Query: 72 --DSSSTGNQSVGNGRMPSLCAT---LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLS 126
+ S + G+G+ L + ++ M++ E G Q +LL+GSL+
Sbjct: 77 IGEGSGDVQSASGDGKYELLSVANDLIADEIKNLMSRTEVKGHQTD------TLLAGSLA 130
Query: 127 MALCYIQRVFRS--GLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGA 184
ALCYI RV + + RIL + + D QY+ MN IF+AQR + ID+C L +
Sbjct: 131 KALCYIHRVTKELEAGQELKSRILVFKAAEDCARQYMNFMNVIFAAQRQNILIDACVLDS 190
Query: 185 QNSAFLQQCMS 195
+ S LQQ +S
Sbjct: 191 E-SGLLQQLIS 200
>gi|194759192|ref|XP_001961833.1| GF14734 [Drosophila ananassae]
gi|190615530|gb|EDV31054.1| GF14734 [Drosophila ananassae]
Length = 297
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 99/203 (48%), Gaps = 20/203 (9%)
Query: 2 ASAPSKLYSDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVV 59
A SK + L+V++LDTNP + + +Q L V+AF NA L N++ V
Sbjct: 3 AETSSKEAESSIDLLVIVLDTNPSQHIVRQNPQNLTQILEAVIAFGNAHLMQKAQNKLAV 62
Query: 60 IATGYNSCDYVYDSSSTG---NQSVGNGRMPSLC-ATLLQNLEE-FMNKDEQLGKQEPEG 114
++ +++ +++Y Q G SL T+ Q L MN G E
Sbjct: 63 LSCSHHATNFLYPLPRRQVELRQVDGQYEAFSLVEKTVKQQLGSILMNAPRLNGPSE--- 119
Query: 115 RIACSLLSGSLSMALCYIQRVFR---SGL-LHPQPRILCLQGSPDGPEQYVAIMNAIFSA 170
SLL+GS+SMALCYI R+ R SG+ +H RIL L GS + QY+ MN F+A
Sbjct: 120 ----SLLAGSMSMALCYISRLQRNVTSGVKMHS--RILVLTGSNECASQYMTFMNVFFTA 173
Query: 171 QRSMVPIDSCYLGAQNSAFLQQC 193
Q+ + ID+C L S Q C
Sbjct: 174 QKLGIVIDTCALDKTLSLLQQGC 196
>gi|346472167|gb|AEO35928.1| hypothetical protein [Amblyomma maculatum]
Length = 293
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 11 DDVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
D+ SL+V ++DTNP + S+FL F N+ L LN N++ VIA +
Sbjct: 5 DEGSLLVTIIDTNPCASLLQNEEGIVSRFLDAATVFCNSHLMLNPCNKLAVIACHSHKSM 64
Query: 69 YVY---DSSSTGNQSVGNGR---MPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLS 122
++Y S+ N SV +G+ + + + ++E + DE E ++ +LL+
Sbjct: 65 FLYPRAQPSAQENYSV-DGQYELFSEVKNAVKEGVKELVLSDEN------ESLVSETLLT 117
Query: 123 GSLSMALCYIQRVFR--SGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180
G LS+ALC+I RV + +G RIL L S + QY+ MN F+AQ+ V ID+C
Sbjct: 118 GGLSLALCHINRVEKETAGQKKIASRILVLSASGESASQYLNFMNVFFTAQKKNVIIDAC 177
Query: 181 YLGAQNSAFLQQ 192
L ++S LQQ
Sbjct: 178 VL-EKDSGLLQQ 188
>gi|158296528|ref|XP_316918.4| AGAP008522-PA [Anopheles gambiae str. PEST]
gi|157014753|gb|EAA12181.5| AGAP008522-PA [Anopheles gambiae str. PEST]
Length = 288
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 93/192 (48%), Gaps = 14/192 (7%)
Query: 10 SDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
+ D SL+V++LDTNP + +Q L ++AF NA L N++ V+A +++
Sbjct: 4 NKDASLLVIVLDTNPSQRIIREKPHNLTQCLDSIVAFANAHLMQKAQNKLAVLACHHHAT 63
Query: 68 DYVYDSSSTG---NQSVGNGRMPSLC-ATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSG 123
++Y + Q G + +L T+ Q L +N L SLL+G
Sbjct: 64 QFLYPTPGKPLDIRQVDGQYEVFTLVEKTIKQKLAHMINTAPPLTTPTE------SLLAG 117
Query: 124 SLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCY 181
S+SMALCYI R+ R+ + R+L + GS + QY+ MN F+AQ+ V +D C
Sbjct: 118 SMSMALCYIARINRNKAPGSKINSRVLVVTGSNECASQYMTYMNVFFTAQKQGVVVDVCA 177
Query: 182 LGAQNSAFLQQC 193
L S Q C
Sbjct: 178 LDKALSLLQQGC 189
>gi|409080333|gb|EKM80693.1| hypothetical protein AGABI1DRAFT_119282 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 361
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 87/190 (45%), Gaps = 19/190 (10%)
Query: 18 VLLDTNPFFWSSSS-----LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYD 72
V+LD P W S+ L+ FL+HVL FLNA + N N + V + +Y
Sbjct: 6 VVLDLPPAQWHRSARHDPPLALPDFLSHVLVFLNAHIANNAENSLAVFGAFPGTSPLLYS 65
Query: 73 SSST--GNQSVGNGRMPSLCATLLQNLEEFMNKDEQLG-KQEPEGRIACSLLSGSLSMAL 129
S+ + + PS + LG + PE S L G+++ AL
Sbjct: 66 SADPVPARLPIDSNSYPSFVHLDHAVARRVTAVLDSLGTDRAPEP----SALVGAITKAL 121
Query: 130 CYIQRVFRSG-------LLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYL 182
CY+ R+ S + P PR+L L SPD Y+ IMN++FSAQ+ V ID C +
Sbjct: 122 CYVNRLAISPSSAAPAEHVLPDPRLLILSVSPDLATSYIPIMNSVFSAQKLKVTIDVCQV 181
Query: 183 GAQNSAFLQQ 192
++ FLQQ
Sbjct: 182 FGPDTVFLQQ 191
>gi|157132766|ref|XP_001662634.1| transcription factor TFIIH-subunit, putative [Aedes aegypti]
gi|108871079|gb|EAT35304.1| AAEL012523-PA [Aedes aegypti]
Length = 288
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 96/192 (50%), Gaps = 14/192 (7%)
Query: 10 SDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
+ D SL+V+++DTNP + +Q L ++AF NA L N++ V+A +++
Sbjct: 4 NKDASLLVIVMDTNPSQRIIRENPHHLTQCLDSIVAFANAHLMQKAQNKLAVLACHHHAT 63
Query: 68 DYVYDSSSTG---NQSVGNGRMPSLC-ATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSG 123
+++Y + Q G +L T+ Q L + +++ +L SLL+G
Sbjct: 64 EFLYPTPGKPLDIRQVDGQYEAFTLVEKTIKQKLAKVISEAPRLTVPTE------SLLAG 117
Query: 124 SLSMALCYIQRVFRS--GLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCY 181
S++MALCYI RV R+ + RIL + GS + QY+ MN F+AQ+ V +D C
Sbjct: 118 SMAMALCYIARVHRNKPAGVKINSRILVVTGSNECASQYMTYMNVFFTAQKQNVSLDVCA 177
Query: 182 LGAQNSAFLQQC 193
L S Q C
Sbjct: 178 LDKPLSLLQQGC 189
>gi|19112324|ref|NP_595532.1| transcription factor TFIIH complex subunit Tfb4
[Schizosaccharomyces pombe 972h-]
gi|62901129|sp|O74366.1|TFB4_SCHPO RecName: Full=RNA polymerase II transcription factor B subunit 4;
AltName: Full=RNA polymerase II transcription factor B
34 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p34 subunit
gi|3417433|emb|CAA20320.1| transcription factor TFIIH complex subunit Tfb4
[Schizosaccharomyces pombe]
Length = 297
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 96/195 (49%), Gaps = 24/195 (12%)
Query: 10 SDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
+D SL+VV+LD NP W S + S+ L + FLNA L + N+V V+A+ +
Sbjct: 20 NDTPSLLVVILDANPASWYSLSKKVPVSKVLADITVFLNAHLAFHHDNRVAVLASHSDKV 79
Query: 68 DYVYDSSSTGNQSVGN----------GRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIA 117
+Y+Y S + Q V + + +L ++ M+ +++ ++
Sbjct: 80 EYLYPSIAP-EQKVAEVDPTKEANTYRKFREVDDLVLSGMKRLMSSTDKVSRK------- 131
Query: 118 CSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPI 177
+++SG+LS AL YI +V L + RIL + D QY+ MN IF AQ+ +PI
Sbjct: 132 -TMISGALSRALAYINQVQNKNTL--RSRILIFSLTGDVALQYIPTMNCIFCAQKKNIPI 188
Query: 178 DSCYLGAQNSAFLQQ 192
+ C + + FL+Q
Sbjct: 189 NVCNIEG-GTLFLEQ 202
>gi|198475301|ref|XP_001357006.2| GA18615 [Drosophila pseudoobscura pseudoobscura]
gi|198138760|gb|EAL34072.2| GA18615 [Drosophila pseudoobscura pseudoobscura]
Length = 298
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 94/190 (49%), Gaps = 16/190 (8%)
Query: 13 VSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYV 70
+ L+V++LDTNP + + +Q L V+AF NA L N++ VI+ +++ +++
Sbjct: 15 IDLLVIVLDTNPSQHIVRQNPQNLTQILEAVIAFGNAHLMQKAQNKLAVISCAHHATNFL 74
Query: 71 YDSSSTG---NQSVGNGRMPSLC-ATLLQNLEEFMNKDEQLGKQEPEGRIAC-SLLSGSL 125
Y Q G SL T+ Q L + +LG C SLL+GS+
Sbjct: 75 YPQPRRQVELRQIDGQYEAFSLVEKTVKQQLGSILMNAPRLGS-------PCESLLAGSM 127
Query: 126 SMALCYIQRVFR--SGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLG 183
+MALCYI R+ R + + RIL L GS + QY+ MN F+AQ+ + ID+C L
Sbjct: 128 AMALCYISRLQRNVAAGVKMHSRILVLTGSNECSSQYMTFMNVFFTAQKLGITIDTCALD 187
Query: 184 AQNSAFLQQC 193
S Q C
Sbjct: 188 KTLSLLQQGC 197
>gi|407926572|gb|EKG19539.1| Transcription factor Tfb4 [Macrophomina phaseolina MS6]
Length = 380
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 103/235 (43%), Gaps = 64/235 (27%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ +++DTNP W+ + +L S+ + ++L F+NA L +N NQV V+A+ + ++Y
Sbjct: 20 SLLTIIIDTNPHAWAFLADTLPLSKAIANLLVFINAHLAINSANQVAVLASHSHQATWLY 79
Query: 72 ----------------------------DSSSTGNQSVGNGRMP--SLCATLLQNLEEFM 101
D S T + N P ++ LL NL M
Sbjct: 80 PTPHPPKAKRRNAPNGNKEENGDADGDVDMSDTPSMDDANKYRPFRNVETELLANLRVLM 139
Query: 102 NKDEQLGKQEPEGRIACSLLSGSLSMALCYIQR------------------------VFR 137
+ ++ + +L++G+L+ AL YI + R
Sbjct: 140 ARTSEMDLKA----STTTLVAGALTTALAYIAKANIKSAPQVGDTQMADLATAADPPAAR 195
Query: 138 SGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
S L RIL L S D QY+ +MNAIF+AQR +PID L A ++ FLQQ
Sbjct: 196 SSLTS---RILVLSVSGDLASQYIPVMNAIFAAQRQRIPIDILKL-AGDTVFLQQ 246
>gi|426197233|gb|EKV47160.1| hypothetical protein AGABI2DRAFT_204058 [Agaricus bisporus var.
bisporus H97]
Length = 361
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 87/190 (45%), Gaps = 19/190 (10%)
Query: 18 VLLDTNPFFWSSSS-----LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYD 72
V+LD P W S+ L+ FL+HVL FLNA + N N + V + +Y
Sbjct: 6 VVLDLPPAQWHRSARHDPPLALPDFLSHVLVFLNAHIANNAENSLAVFGAFPGTSPLLYS 65
Query: 73 SSST--GNQSVGNGRMPSLCATLLQNLEEFMNKDEQLG-KQEPEGRIACSLLSGSLSMAL 129
S+ + + PS + LG + PE S L G+++ AL
Sbjct: 66 SADPVPARLPIDSNSYPSFVHLDHAVARRVTAVLDSLGTDRAPEP----SALVGAITKAL 121
Query: 130 CYIQRVFRSG-------LLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYL 182
CY+ R+ S + P PR+L L SPD Y+ IMN++FSAQ+ V ID C +
Sbjct: 122 CYVNRLAISPSSAAPAEHVLPDPRLLILSVSPDLATSYIPIMNSVFSAQKLKVTIDVCQV 181
Query: 183 GAQNSAFLQQ 192
++ FLQQ
Sbjct: 182 FGPDTVFLQQ 191
>gi|2257568|dbj|BAA21460.1| basic transcription factor 2.35KD subunit [Schizosaccharomyces
pombe]
Length = 298
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 96/195 (49%), Gaps = 24/195 (12%)
Query: 10 SDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
+D SL+VV+LD NP W S + S+ L + FLNA L + N+V V+A+ +
Sbjct: 20 NDTPSLLVVILDANPASWYSLSKKVPVSKVLADITVFLNAHLAFHHDNRVAVLASHSDKV 79
Query: 68 DYVYDSSSTGNQSVGN----------GRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIA 117
+Y+Y S + Q V + + +L ++ M+ +++ ++
Sbjct: 80 EYLYPSIAP-EQKVAEVDPTKEANTYRKFREVDDLVLSGMKRLMSSTDKVSRK------- 131
Query: 118 CSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPI 177
+++SG+LS AL YI +V L + RIL + D QY+ MN IF AQ+ +PI
Sbjct: 132 -TMISGALSRALAYINQVQNKNTL--RSRILIFSLTGDVALQYIPTMNCIFCAQKKNIPI 188
Query: 178 DSCYLGAQNSAFLQQ 192
+ C + + FL+Q
Sbjct: 189 NVCNIEG-GTLFLEQ 202
>gi|17945214|gb|AAL48665.1| RE13149p [Drosophila melanogaster]
Length = 299
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 101/201 (50%), Gaps = 20/201 (9%)
Query: 4 APSKLYSDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
A SK + L+V++LDTNP F + + +Q L V+AF NA L N++ V++
Sbjct: 6 AASKEAESCIDLLVIVLDTNPSQHFVRQNPQNLTQILEAVIAFGNAHLMQKAQNKLAVVS 65
Query: 62 TGYNSCDYVYDSSSTGNQ-SVGNGRMPSLCATLLQNLEEFMNKDEQLGK---QEPEGRIA 117
+++ +++Y + +G+ + NL E K +QLG P
Sbjct: 66 CSHHATNFLYPLPRRQVELRQVDGQYEAF------NLVEKTVK-QQLGSILMNAPRLSAP 118
Query: 118 C-SLLSGSLSMALCYIQRVFRSGLLHP----QPRILCLQGSPDGPEQYVAIMNAIFSAQR 172
C SLL+GS+SMALCYI R+ R+ L P RIL + GS + QY+ +N F+AQ+
Sbjct: 119 CESLLAGSMSMALCYISRLQRN--LAPGVKMHSRILVVTGSNECASQYMTFLNVFFTAQK 176
Query: 173 SMVPIDSCYLGAQNSAFLQQC 193
+ ID+C L S Q C
Sbjct: 177 LGITIDTCALDKTLSLLQQGC 197
>gi|302899112|ref|XP_003047982.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256728914|gb|EEU42269.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 355
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 103/217 (47%), Gaps = 35/217 (16%)
Query: 9 YSDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS 66
+ D SL+ ++LDTNP W++ ++L S+ + ++L F+NA L + NQV +IA +
Sbjct: 15 HEDTPSLLTIVLDTNPRAWAAIGNALPLSRAIANILVFVNAHLAFSNANQVALIAAHVDR 74
Query: 67 CDYVYDSSSTGNQSV-GNGRMPSLCATLLQNLEEF----------MNKDEQLGKQEPEGR 115
++Y + + G+ M + + +F ++ +L Q E
Sbjct: 75 AQWLYPTPPKPTRDASGDVSMKDAAPSQTSSANKFPQFAQIEAAVLDSVRKLMDQTTEAD 134
Query: 116 IACSL--LSGSLSMALCYIQRVFRSGLLHP------------------QPRILCLQGSPD 155
+A + LSG+L++ALC+I + ++ L P + RIL + S
Sbjct: 135 LATTTTQLSGALTLALCHINKAAQA-LCSPTANLEDNHKATTTAPPTVRGRILVISVSDS 193
Query: 156 GPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
P QY+ MNA+F+A + V ID+ L + FLQQ
Sbjct: 194 EPSQYIPTMNAVFAAAHAQVAIDTLSLTG-DPTFLQQ 229
>gi|299751088|ref|XP_001830046.2| basic transcription factor 2.35KD subunit [Coprinopsis cinerea
okayama7#130]
gi|298409214|gb|EAU91711.2| basic transcription factor 2.35KD subunit [Coprinopsis cinerea
okayama7#130]
Length = 280
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 94/197 (47%), Gaps = 16/197 (8%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSS-----LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
+D +L+ V+LD +P W ++ ++ + FL +LAFLNA + N + V
Sbjct: 2 NDHGTLLAVVLDLSPAQWHRAANDPQPITLNAFLAQLLAFLNAHIACMHENTLAVFGAFP 61
Query: 65 NSCDYVY---DSSSTGNQSVGNGRMPSLCATLLQN--LEEFMNKDEQLGKQEPEGRIACS 119
+Y D T + SV P LL N + + + L E + C+
Sbjct: 62 GKSVMLYASTDQHQTASISVDANSYPPF--KLLDNTVVTSIAAELDALDDSHDEEEVPCA 119
Query: 120 LLSGSLSMALCYIQRVFR-SGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVP 176
L+ G+L+ ALC + S + PQ PRIL L SPD Y+ IMNAIFSAQ+ V
Sbjct: 120 LV-GALTKALCSTTPLPNGSQGVPPQLDPRILILSVSPDLSTSYIPIMNAIFSAQKLKVT 178
Query: 177 IDSCYLGAQNSAFLQQC 193
ID+C + + FLQQ
Sbjct: 179 IDACQIYGGETVFLQQA 195
>gi|442749163|gb|JAA66741.1| Putative rna polymer [Ixodes ricinus]
Length = 293
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 96/192 (50%), Gaps = 18/192 (9%)
Query: 11 DDVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
D+ SL+V ++DTNP S S+ L + F N+ L LN N++ +IA+ +
Sbjct: 5 DEGSLLVAIIDTNPCASLLESDQGIVSKLLDALTVFCNSHLMLNPCNKLAIIASHSHRST 64
Query: 69 YVY---DSSSTGNQSVGNGR---MPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLS 122
++Y SS+ SV +G+ + + ++E + D+ E SLL+
Sbjct: 65 FIYPKPQESSSDTYSV-DGQYELFTEVTGAIKDGVKELVLSDDS------ESAAGESLLT 117
Query: 123 GSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180
G LS+ALCYI R+ + + RIL L S + QY+ MN F+AQ+ V ID+C
Sbjct: 118 GGLSLALCYINRIEKESSSQNKIASRILVLSASGESASQYLNFMNVFFTAQKKNVIIDAC 177
Query: 181 YLGAQNSAFLQQ 192
L ++S LQQ
Sbjct: 178 VL-EKDSGLLQQ 188
>gi|340515579|gb|EGR45832.1| hypothetical protein TRIREDRAFT_67476 [Trichoderma reesei QM6a]
Length = 362
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 109/228 (47%), Gaps = 60/228 (26%)
Query: 14 SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W++ SSLS +Q ++++L F+NA L + NQV VIA N ++Y
Sbjct: 20 SLLSIVLDTNPRAWAALDSSLSLAQAISNILVFVNAHLAFSNANQVAVIAAHVNRAVWLY 79
Query: 72 -----DSSSTGNQSVGNGRM-----------PS---------LCATLLQNLEEFMNKD-- 104
SS+T + G+ +M PS + +++ +++ M +
Sbjct: 80 PALQHPSSTTVKDNSGDVQMHDASAETSLPPPSANKYPQFAQIESSVFSSIQTLMAETTV 139
Query: 105 ---EQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRS--------------GLLHPQP-- 145
+QL Q LSG+L++ALC I + ++ P P
Sbjct: 140 QDLDQLTTQ----------LSGALTLALCRINKAAQALSSSDTTLSNAAPVNATAPPPVK 189
Query: 146 -RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
RI+ + S P QY+ MNA+F+A + V ID+ L A +S FLQQ
Sbjct: 190 GRIVVVSVSDSDPSQYIPTMNAVFAAAHNQVAIDTISL-AGDSTFLQQ 236
>gi|449683803|ref|XP_002159513.2| PREDICTED: general transcription factor IIH subunit 3-like [Hydra
magnipapillata]
Length = 291
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 21/193 (10%)
Query: 14 SLVVVLLDTNPFFWSS----SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
+L+V++LD N +W+S ++ F + + VL F N+ L LN N++ ++ +
Sbjct: 8 NLLVIILDINAAWWASQFQNNNDVFQKCIDSVLVFCNSYLMLNHTNKLALVVCNSEQACF 67
Query: 70 VYDSSSTGNQSVG------NGR---MPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSL 120
+Y +SS + +G+ + TL + + P SL
Sbjct: 68 LYPNSSKSTSGISIETSQKDGKYELFSEMNETLQCEFKRLFAESVSNMTNRP------SL 121
Query: 121 LSGSLSMALCYIQRVFRSGL-LHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDS 179
L+G+L+ ALCYI R+ RIL ++GS D QY+ +MN IF+A + + ID
Sbjct: 122 LAGALTKALCYIHSHDRTANGRRTNARILIIKGSSDSSSQYMTVMNCIFAASKKNIVIDC 181
Query: 180 CYLGAQNSAFLQQ 192
C L NS F+QQ
Sbjct: 182 CAL-QNNSGFMQQ 193
>gi|357624804|gb|EHJ75440.1| putative transcription factor TFIIH-subunit [Danaus plexippus]
Length = 291
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 90/194 (46%), Gaps = 22/194 (11%)
Query: 12 DVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
D SL+V+++DTNP + + + L V+AF N+ L NQ+ VI ++ +Y
Sbjct: 9 DSSLLVIIVDTNPNQRYITEDPKVLTGCLDAVIAFANSHLMQKSRNQLAVIGCHFHKSEY 68
Query: 70 VYDSSSTG---NQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLS 126
+Y S Q G + +L ++ M + Q E R SLL+G+++
Sbjct: 69 LYPSPGKPLDVRQIDGQYELFTLVEKTIK-----MRLVNLIKSQPQEERPGESLLAGAMA 123
Query: 127 MALCYIQRVFRSGLLHPQP-------RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDS 179
M LC+I R+ R QP R+L + GS D QY+ MN F+AQ+ V +D
Sbjct: 124 MGLCFIARMRRE-----QPPGLRMVSRMLVVTGSSDTAAQYINYMNVFFTAQKQQVLLDV 178
Query: 180 CYLGAQNSAFLQQC 193
C L S Q C
Sbjct: 179 CSLDKHLSLLQQGC 192
>gi|328352540|emb|CCA38939.1| RNA polymerase II transcription factor B subunit 4 [Komagataella
pastoris CBS 7435]
Length = 307
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 99/201 (49%), Gaps = 31/201 (15%)
Query: 14 SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY------- 64
SL+ V++DTNP W+ + + VL LNA L+LN N+V V+ +
Sbjct: 23 SLLAVVIDTNPLEWTKLKGVICLKELCKSVLVLLNAHLSLNSGNRVAVLTSSSLNSGPKF 82
Query: 65 ---NSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLG--KQEPEGRIACS 119
+ D Y+ + S + + + ++Q L+ ++ +E L QE +G IA
Sbjct: 83 LYPDPNDKTYEKRESLLSSDIHRQFKFVDQKIIQELQILLD-NEPLNPENQELKGSIA-- 139
Query: 120 LLSGSLSMALCYIQRVFRSGLLHPQ-------PRILCLQGSPDGPEQYVAIMNAIFSAQR 172
G++SMAL YI R+ + P+ ++L + S D +QYV MN IFSAQ+
Sbjct: 140 ---GAMSMALSYINRLTN---IEPESTGNTLRAKMLVISISDDSTQQYVPFMNCIFSAQK 193
Query: 173 SMVPIDSCYLGAQNSAFLQQC 193
V ID C +G +S+FLQQ
Sbjct: 194 MKVSIDVCKMGP-DSSFLQQA 213
>gi|189189624|ref|XP_001931151.1| RNA polymerase II transcription factor B subunit 4 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187972757|gb|EDU40256.1| RNA polymerase II transcription factor B subunit 4 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 370
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 104/229 (45%), Gaps = 57/229 (24%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ SS+LS S L ++L F+NA L N+V VIA+ + ++Y
Sbjct: 20 SLLAIVLDTNPHAWAHLSSTLSLSAALANILVFINAHLASGNANEVAVIASHSHKTAFLY 79
Query: 72 DSSST-------GNQSVGNGRMPSLC-------------ATLLQNLEEFMNKDEQLGKQE 111
+ S+ G N ++ + + +L+N + +N+ ++ +
Sbjct: 80 PTPSSPQPQSRHGTNGATNDKVHDMAESANKYRPFAVVESAILRNFVKLLNETKESHLEA 139
Query: 112 PEGRIACSLLSGSLSMALCYIQRVFRSGLLHP---------------------------Q 144
+L+ G+LS+AL +I + +LH
Sbjct: 140 ----TPTTLIGGALSLALTHIN---KQTILHAPTAASAESTALSALADSENAHVDRVPLT 192
Query: 145 PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
RIL + S D QY+ +MN+IF+AQR +PID L A ++ LQQ
Sbjct: 193 SRILIVSVSGDLANQYIPVMNSIFAAQRKRIPIDILKL-AGDTVLLQQA 240
>gi|254567625|ref|XP_002490923.1| Subunit of TFIIH complex, involved in transcription initiation,
similar to 34 kDa subunit of human T [Komagataella
pastoris GS115]
gi|238030720|emb|CAY68643.1| Subunit of TFIIH complex, involved in transcription initiation,
similar to 34 kDa subunit of human T [Komagataella
pastoris GS115]
Length = 328
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 99/200 (49%), Gaps = 31/200 (15%)
Query: 14 SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY------- 64
SL+ V++DTNP W+ + + VL LNA L+LN N+V V+ +
Sbjct: 23 SLLAVVIDTNPLEWTKLKGVICLKELCKSVLVLLNAHLSLNSGNRVAVLTSSSLNSGPKF 82
Query: 65 ---NSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLG--KQEPEGRIACS 119
+ D Y+ + S + + + ++Q L+ ++ +E L QE +G IA
Sbjct: 83 LYPDPNDKTYEKRESLLSSDIHRQFKFVDQKIIQELQILLD-NEPLNPENQELKGSIA-- 139
Query: 120 LLSGSLSMALCYIQRVFRSGLLHPQ-------PRILCLQGSPDGPEQYVAIMNAIFSAQR 172
G++SMAL YI R+ + P+ ++L + S D +QYV MN IFSAQ+
Sbjct: 140 ---GAMSMALSYINRLTN---IEPESTGNTLRAKMLVISISDDSTQQYVPFMNCIFSAQK 193
Query: 173 SMVPIDSCYLGAQNSAFLQQ 192
V ID C +G +S+FLQQ
Sbjct: 194 MKVSIDVCKMGP-DSSFLQQ 212
>gi|310794652|gb|EFQ30113.1| transcription factor tfb4 [Glomerella graminicola M1.001]
Length = 365
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 99/223 (44%), Gaps = 50/223 (22%)
Query: 14 SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ +++DTNP W++ L S+ + ++L F+NA L + NQV + A+ N ++Y
Sbjct: 20 SLLSIVIDTNPRAWAALNDVLPLSKAIANILVFVNAHLAFSNANQVAIFASHSNRAVWLY 79
Query: 72 DS------------------------SSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQL 107
S + T NQS N + P Q M+ +L
Sbjct: 80 PSKPEDAGANGAPYAEDVTMTDADFFAPTPNQSSAN-KFPQFA----QIEAAVMSSMRKL 134
Query: 108 GKQEPEGRIACSL--LSGSLSMALCYIQ----------------RVFRSGLLHPQPRILC 149
E +AC+ LSG+L++AL +I R S L + RI
Sbjct: 135 VDATTEADLACTTTQLSGALTLALAHINKTSLSLNETNKAPDVARSTSSALSRLRARIFV 194
Query: 150 LQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
L S P QY++ MNA+F+A S +PID+ L ++ FLQQ
Sbjct: 195 LSVSDSEPVQYISTMNAVFAAAHSQIPIDTLALSG-DATFLQQ 236
>gi|207340364|gb|EDZ68737.1| YPR056Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 230
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 100/216 (46%), Gaps = 24/216 (11%)
Query: 2 ASAPSKLYSDDVSLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLN 55
A + ++ + SL+ V+++ P W++ S + L ++ FLNA L N N
Sbjct: 12 ARSRKQVTEESPSLLTVIIEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSAN 71
Query: 56 QVVVIATGYNSCDYVY-DSSSTGNQSVGNGRMPSLCATLLQNL-EEFMNKDE-------- 105
+V VIA Y+Y +S+S S + S + ++ F N DE
Sbjct: 72 KVAVIAAYSQGIKYLYPESTSALKASESENKTRSDLKIINSDMYRRFRNVDETLVEEIYK 131
Query: 106 --QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHP-QPRILCLQ----GSPDGPE 158
+L K++ E S L+G++S L Y+ R+ + + + R+L L S D
Sbjct: 132 LFELEKKQIEQNSQRSTLAGAMSAGLTYVNRISKESVTTSLKSRLLVLTCGSGSSKDEIF 191
Query: 159 QYVAIMNAIFSAQRSMVPIDSCYL-GAQNSAFLQQC 193
QY+ IMN IFSA + PID + G++ S FLQQ
Sbjct: 192 QYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQT 227
>gi|347440963|emb|CCD33884.1| similar to RNA polymerase II transcription factor B subunit 4
[Botryotinia fuckeliana]
Length = 358
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 103/217 (47%), Gaps = 44/217 (20%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
S +V++LDTNP W SS+L S+ + ++L F+NA L +N NQV +IA+ + ++Y
Sbjct: 22 SCLVIILDTNPHAWEILSSTLPLSKAIANLLVFVNAHLAVNNSNQVAIIASHCHRAVWLY 81
Query: 72 DSSSTGNQSVGNG----RMPSLCA------TLLQNLEEFMNKDEQLGKQEPEGRIACSL- 120
+ + ++ G P A L++N +N L + E ++ +
Sbjct: 82 PAPPSASEDTEMGGSTTHGPPDDANKYRQFALIEN--TLLNSVRSLIESTTEQEVSTTTT 139
Query: 121 --LSGSLSMALCYIQRVF-----------------------RSGLLHPQPRILCLQGSPD 155
++G+L++AL YI + +GL Q RIL L S D
Sbjct: 140 TQMAGALTLALSYINKQLTAYSDVSAADSKPTPSDITPSDSTTGL---QSRILVLSVSGD 196
Query: 156 GPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
QY+ IMN F+AQR +PID L A ++ FLQQ
Sbjct: 197 LAHQYIPIMNTTFAAQRMRIPIDILKL-AGDTVFLQQ 232
>gi|154310839|ref|XP_001554750.1| hypothetical protein BC1G_06398 [Botryotinia fuckeliana B05.10]
Length = 356
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 103/217 (47%), Gaps = 44/217 (20%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
S +V++LDTNP W SS+L S+ + ++L F+NA L +N NQV +IA+ + ++Y
Sbjct: 20 SCLVIILDTNPHAWEILSSTLPLSKAIANLLVFVNAHLAVNNSNQVAIIASHCHRAVWLY 79
Query: 72 DSSSTGNQSVGNG----RMPSLCA------TLLQNLEEFMNKDEQLGKQEPEGRIACSL- 120
+ + ++ G P A L++N +N L + E ++ +
Sbjct: 80 PAPPSASEDTEMGGSTTHGPPDDANKYRQFALIEN--TLLNSVRSLIESTTEQEVSTTTT 137
Query: 121 --LSGSLSMALCYIQRVF-----------------------RSGLLHPQPRILCLQGSPD 155
++G+L++AL YI + +GL Q RIL L S D
Sbjct: 138 TQMAGALTLALSYINKQLTAYSDVSAADSKPTPSDITPSDSTTGL---QSRILVLSVSGD 194
Query: 156 GPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
QY+ IMN F+AQR +PID L A ++ FLQQ
Sbjct: 195 LAHQYIPIMNTTFAAQRMRIPIDILKL-AGDTVFLQQ 230
>gi|195159598|ref|XP_002020665.1| GL15043 [Drosophila persimilis]
gi|194117615|gb|EDW39658.1| GL15043 [Drosophila persimilis]
Length = 298
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 96/201 (47%), Gaps = 20/201 (9%)
Query: 4 APSKLYSDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
A S + L+V++LDTNP + + +Q L V+AF NA L N++ VI+
Sbjct: 6 AASTETESGIDLLVIVLDTNPSQHIVRQNPQNLTQILEAVIAFGNAHLMQKAQNKLAVIS 65
Query: 62 TGYNSCDYVYDSSSTG---NQSVGNGRMPSLC-ATLLQNLEEFMNKDEQLGKQEPEGRIA 117
+++ +++Y Q G SL T+ Q L + +LG
Sbjct: 66 CAHHATNFLYPQPRRQVELRQIDGQYEAFSLVEKTVKQQLGSILMNAPRLGS-------P 118
Query: 118 C-SLLSGSLSMALCYIQRVFRSGLLHP----QPRILCLQGSPDGPEQYVAIMNAIFSAQR 172
C SLL+GS++MALCYI R+ G+L RIL L GS + QY+ MN F+AQ+
Sbjct: 119 CESLLAGSMAMALCYISRL--HGMLAAGVKMHSRILVLTGSNECSSQYMTFMNVFFTAQK 176
Query: 173 SMVPIDSCYLGAQNSAFLQQC 193
+ ID+C L S Q C
Sbjct: 177 LGITIDTCALDKTLSLLQQGC 197
>gi|393244851|gb|EJD52362.1| transcription factor Tfb4 [Auricularia delicata TFB-10046 SS5]
Length = 338
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 94/205 (45%), Gaps = 37/205 (18%)
Query: 14 SLVVVLLDTNPFFW------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
S + ++LD +P W + L+ FLT LAF+NA L N +VV+
Sbjct: 5 SHLALILDLSPTQWHLCGTAAEHPLALRDFLTQTLAFVNAHLAARDENSLVVLGALPGKS 64
Query: 68 DYVY----DSSSTGNQSVGNGRMP--SLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLL 121
+Y D S N + N P ++ T+++ + + ++ + ++EP L
Sbjct: 65 VLLYASNEDFSGMANVADANSYQPFKAVDTTVMKRVIDELSSLGDITEEEPTS------L 118
Query: 122 SGSLSMALCYIQRVFRSGLLHPQP--------------RILCLQGSPDGPEQYVAIMNAI 167
G+L+ ALC+I R+ HP P RIL L SPD Y+ +MN+I
Sbjct: 119 VGALTKALCHINRI-----THPPPPANPSESPPTPPEARILILSVSPDLSTSYIPLMNSI 173
Query: 168 FSAQRSMVPIDSCYLGAQNSAFLQQ 192
FSAQ+ ID C + ++ FLQQ
Sbjct: 174 FSAQKLKAIIDVCKVFGPDAVFLQQ 198
>gi|194853925|ref|XP_001968252.1| GG24611 [Drosophila erecta]
gi|190660119|gb|EDV57311.1| GG24611 [Drosophila erecta]
Length = 299
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 96/201 (47%), Gaps = 20/201 (9%)
Query: 4 APSKLYSDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
A SK + L+V++LDTNP + + +Q L V+AF NA L N++ V++
Sbjct: 6 AASKEAESCIDLLVIVLDTNPSQHIVRQNPQNLTQILEAVIAFGNAHLMQKAQNKLAVVS 65
Query: 62 TGYNSCDYVYDSSSTG---NQSVGNGRMPSLCATLLQNLEEFMNKDEQLGK---QEPEGR 115
+++ +++Y Q G SL ++ +QLG P
Sbjct: 66 CSHHATNFLYPLPRRQVELRQVDGQYEAFSLVEKTVK---------QQLGSILMNAPRLS 116
Query: 116 IAC-SLLSGSLSMALCYIQRVFRSGL--LHPQPRILCLQGSPDGPEQYVAIMNAIFSAQR 172
C SLL+GS+SMALCYI R+ R+ + RIL L GS + QY+ MN F+AQ+
Sbjct: 117 APCESLLAGSMSMALCYISRLQRNVAPGVKMHSRILVLTGSNECASQYMTFMNVFFTAQK 176
Query: 173 SMVPIDSCYLGAQNSAFLQQC 193
+ ID+C L S Q C
Sbjct: 177 LGITIDTCALNKTLSLLQQGC 197
>gi|444315902|ref|XP_004178608.1| hypothetical protein TBLA_0B02470 [Tetrapisispora blattae CBS 6284]
gi|387511648|emb|CCH59089.1| hypothetical protein TBLA_0B02470 [Tetrapisispora blattae CBS 6284]
Length = 340
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 95/222 (42%), Gaps = 36/222 (16%)
Query: 3 SAPSKLYSDDVSLVVVLLDTNPFFWS-----------SSSLSFSQFLTHVLAFLNAILTL 51
+A ++ + SL+ V++DT P W+ + + + ++ FLN+ L
Sbjct: 12 TARPQVVEETPSLLTVVIDTAPKLWTQFDKEDPDDNTNKEPQLLRVIRAIVVFLNSHLAF 71
Query: 52 NQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGK-- 109
N NQV VIA Y+Y N S +L +F N DE L
Sbjct: 72 NTNNQVAVIAAHSQGIKYLYPKEDNNNVSESTKEKSNLSIINKDMYRQFRNVDESLVDEL 131
Query: 110 ----QEP----EGRIACSLLSGSLSMALCYIQR---------VFRSGLLHPQPRILCLQG 152
QE + + S +SG++S AL Y+ R +F+S LL I C G
Sbjct: 132 FSLFQEESKFIDKKSQKSTISGAMSCALTYVNRITKQFNDASIFKSRLL----VITCGSG 187
Query: 153 -SPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGA-QNSAFLQQ 192
S D QY+ IMN IFSA + PID +G + S FLQQ
Sbjct: 188 RSKDEVFQYIPIMNCIFSATKMKCPIDVVKIGGHEKSTFLQQ 229
>gi|195032196|ref|XP_001988455.1| GH10566 [Drosophila grimshawi]
gi|193904455|gb|EDW03322.1| GH10566 [Drosophila grimshawi]
Length = 300
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 95/202 (47%), Gaps = 22/202 (10%)
Query: 4 APSKLYSDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
A +K + L+ ++LDTNP + + +Q L V+AF NA L N++ VI+
Sbjct: 7 AANKEAEASIDLLAIVLDTNPTQHIVRQNPQNLTQILEAVIAFGNAHLMQKAQNKLAVIS 66
Query: 62 TGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEF----MNKDEQLGK---QEPEG 114
+++ D++Y GR L + E F +QLG P
Sbjct: 67 CSHHATDFLYPLP---------GRQVEL-RPIDGQYEAFSLVEKTVKQQLGSILMNAPRL 116
Query: 115 RIAC-SLLSGSLSMALCYIQRVFR--SGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQ 171
C SLL+GS+SMALCYI R+ R + + RIL L GS + QY+ MN F+AQ
Sbjct: 117 SSPCESLLAGSMSMALCYISRLQRNVAAGVKMHSRILVLTGSNECASQYMTYMNVFFTAQ 176
Query: 172 RSMVPIDSCYLGAQNSAFLQQC 193
+ + ID+C L S Q C
Sbjct: 177 KLSIVIDACALDKTLSLLQQGC 198
>gi|345497965|ref|XP_001603853.2| PREDICTED: general transcription factor IIH subunit 3-like [Nasonia
vitripennis]
Length = 295
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 89/190 (46%), Gaps = 17/190 (8%)
Query: 12 DVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
D SL+V++LD NP + +Q L + F NA L N + ++A ++Y
Sbjct: 6 DRSLLVIILDINPMQKLVKQV-LTQCLDSTIVFSNAHLMQTAGNSLAIMACHSQGAQFLY 64
Query: 72 DSSSTGNQSVGNG---RMPSLCATLLQNLEEF---MNKDEQLGKQEPEGRIACSLLSGSL 125
+ +G + L T+ Q + E M+ D + G +E SL+SG+L
Sbjct: 65 PQEKMPDVRQFDGQYEKFTQLERTVRQQIHEMVGEMSMDRK-GNEE-------SLISGAL 116
Query: 126 SMALCYIQRVFRSGLL--HPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLG 183
SMALCYI R+ R H PRIL + S D QY+ MN F+AQ+ V +D C L
Sbjct: 117 SMALCYIARMEREKYAGEHLHPRILVITASHDSATQYMNYMNIFFTAQKMGVMLDVCSLD 176
Query: 184 AQNSAFLQQC 193
+ + Q C
Sbjct: 177 HELTLLQQGC 186
>gi|330933521|ref|XP_003304199.1| hypothetical protein PTT_16692 [Pyrenophora teres f. teres 0-1]
gi|311319344|gb|EFQ87711.1| hypothetical protein PTT_16692 [Pyrenophora teres f. teres 0-1]
Length = 376
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 104/235 (44%), Gaps = 63/235 (26%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ SS+LS S L ++L F+NA L N+V VIA+ + ++Y
Sbjct: 20 SLLAIVLDTNPHAWAHLSSTLSLSAALANILVFINAHLASGNANEVAVIASHSHKTTFLY 79
Query: 72 DS-------------SSTGNQSVGNGRMPSLC-------------ATLLQNLEEFMNKDE 105
+ STG N + ++ + +L+N + +N+ +
Sbjct: 80 PTPLSPQPQSRHGTNDSTGTNGATNDKEHAMAESANKYRPFAVVESAILRNFVKLLNETK 139
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHP---------------------- 143
+ + +L+ G+LS+AL +I + +LH
Sbjct: 140 ESHLEA----TPTTLIGGALSLALTHIN---KQTILHAPTAASAESTALSALADSENTHV 192
Query: 144 -----QPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
RIL + S D QY+ +MN+IF+AQR +PID L A ++ LQQ
Sbjct: 193 DRVPLTSRILIVSVSGDLANQYIPVMNSIFAAQRKRIPIDILKL-AGDTVLLQQA 246
>gi|409045010|gb|EKM54491.1| hypothetical protein PHACADRAFT_258371 [Phanerochaete carnosa
HHB-10118-sp]
Length = 360
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 99/206 (48%), Gaps = 30/206 (14%)
Query: 11 DDVSLVVVLLDTNPFFW-------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
D+ S + V+LD +P W + ++ L+H+LAFLNA + N + +
Sbjct: 2 DNASHLGVVLDLSPKQWHLAAQPSNPHPITLVASLSHLLAFLNAHIACKDENSLALFGAL 61
Query: 64 YNSCDYVYDSSSTGNQ-----SVGNGRMP--SLCATLLQNLEEFMNKDEQLGKQEPEGRI 116
+Y S+ N+ + N P + +T+++++ +++ E LG+ E E I
Sbjct: 62 PGKSVMLYSSTMPVNEEEIQPADANTYRPFKVMDSTIMKHI---VSEVEALGEPEVEEPI 118
Query: 117 ACSLLSGSLSMALCYIQRVF--------RSGLLH--PQPRILCLQGSPDGPEQYVAIMNA 166
G+L+ A+CYI RV R+ L P PRIL + SPD Y+ +MN
Sbjct: 119 G---FVGALTKAMCYINRVTNGSTSSTSRNDDLATLPDPRILVISVSPDQSSSYIPVMNL 175
Query: 167 IFSAQRSMVPIDSCYLGAQNSAFLQQ 192
IFSAQ+ V ID C + S FLQQ
Sbjct: 176 IFSAQKLKVTIDVCKIFGGESVFLQQ 201
>gi|451999247|gb|EMD91710.1| hypothetical protein COCHEDRAFT_1136566 [Cochliobolus
heterostrophus C5]
Length = 377
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 105/236 (44%), Gaps = 64/236 (27%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ SS+LS S L ++L F+NA L N+V VIA+ + ++Y
Sbjct: 20 SLLAIVLDTNPHAWAHLSSTLSLSTALANILVFINAHLASGNTNEVAVIASHSHKTTFLY 79
Query: 72 DS---------SSTGNQSV----------------GNGRMP--SLCATLLQNLEEFMNKD 104
S + T N V N P + +T+LQN + +N+
Sbjct: 80 PSPVAPQTQARNGTANGDVEMNGTGGDKGQHTAESANKYRPFAVVESTILQNFVKLLNET 139
Query: 105 EQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHP--------------------- 143
++ + +L+ G+LS+AL +I + +LH
Sbjct: 140 KESHLEA----TPTTLIGGALSLALTHIN---KQTILHAPTAASAESASLAALADSENTH 192
Query: 144 ------QPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
RIL + S D QY+ +MN+IF+AQR +PID L A ++ LQQ
Sbjct: 193 VDRVSLTSRILIVSVSGDLANQYIPVMNSIFAAQRKRIPIDILKL-AGDTVLLQQA 247
>gi|307214269|gb|EFN89365.1| General transcription factor IIH subunit 3 [Harpegnathos saltator]
Length = 292
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 94/194 (48%), Gaps = 22/194 (11%)
Query: 12 DVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
+ SL+V++LD NP + SQ L + F NA L + N++ V+A +S +
Sbjct: 6 NTSLLVIVLDVNPVQRIVKQETKILSQCLDSAIVFANAHLMQSSNNELAVMACHGHSAKF 65
Query: 70 VYDSSSTGNQSVGNG---RMPSLCATLLQNLEEFMNK---DEQLGKQEPEGRIACSLLSG 123
+Y + +G R + T+ L++ +N+ D L + SL+SG
Sbjct: 66 LYPCENAAEIRQIDGQYERFTMVERTVRLQLQKVINELSTDTPLNTE--------SLISG 117
Query: 124 SLSMALCYIQRVFRSGL----LHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDS 179
+LSMALCYI R+ R + LHP RIL + S D QY+ MN F+AQ+ V +D
Sbjct: 118 ALSMALCYIARLERDKVAGQKLHP--RILVITASNDSATQYMNYMNIFFTAQKMNVILDV 175
Query: 180 CYLGAQNSAFLQQC 193
C L + + Q C
Sbjct: 176 CSLDQELTLLQQGC 189
>gi|156034244|ref|XP_001585541.1| hypothetical protein SS1G_13425 [Sclerotinia sclerotiorum 1980]
gi|154698828|gb|EDN98566.1| hypothetical protein SS1G_13425 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 356
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 105/219 (47%), Gaps = 48/219 (21%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
S +V++LDTNP W+ SS+L S+ + ++L F+NA L +N NQV +IA+ + ++Y
Sbjct: 20 SCLVIILDTNPHAWALLSSTLPLSKAVANLLVFINAHLAVNNANQVAIIASHCHRAVWLY 79
Query: 72 DSSSTGNQSVGNG--------------RMPSLCA-TLLQNLEEFMNKDEQLGKQEPEGRI 116
+ + ++ + G R +L TLL +L ++ + QE
Sbjct: 80 PAPPSASEDIEMGGSTTHGPPNDANKYRQFALIENTLLNSLRNLISSTTE---QE-VSTT 135
Query: 117 ACSLLSGSLSMALCYIQRVFRS-----------------------GLLHPQPRILCLQGS 153
+ ++G+L++AL YI + + GL Q RIL L S
Sbjct: 136 TTTQMAGALTLALSYINKQSLAYNDVSASDSKPTTSDVNTSDSSIGL---QSRILVLSVS 192
Query: 154 PDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
D QY+ IMN F+AQR +PID L A ++ FLQQ
Sbjct: 193 GDLAHQYIPIMNTTFAAQRMRIPIDILKL-AGDTVFLQQ 230
>gi|344300009|gb|EGW30349.1| hypothetical protein SPAPADRAFT_63205 [Spathaspora passalidarum
NRRL Y-27907]
Length = 367
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 108/248 (43%), Gaps = 61/248 (24%)
Query: 3 SAPSKLYSDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
++ S+ SD+ SL+ ++LD +P W ++ + ++L FLNA L LN NQV I
Sbjct: 13 TSSSEAISDEPSLLTIILDISPLGWYKLRDLMTLEEMTKNLLVFLNAHLALNNSNQVAFI 72
Query: 61 ATGYNSCDYVY-------------DSSSTGNQSVGNG---RMPSLCATLLQNLEEFMNKD 104
A+ ++Y D +++ V G + + +L+ L EF+N
Sbjct: 73 ASSPKGSRFLYPNPAKSYQEVKVSDGATSARDFVNKGMYRQFRIVDKAVLEELNEFLN-- 130
Query: 105 EQLGKQEPEGRIA--CSLLSGSLSMALCYIQRVF-------------------------- 136
++ K + + +A S LSG+LSMAL Y R+
Sbjct: 131 -EINKDQDDTMLADPASKLSGALSMALTYTNRMLTLDQSITTTTASAIASTTSSSASAAS 189
Query: 137 -----------RSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLG-A 184
S + RIL + + D +Y+ IMN IF+AQ+ + ID LG
Sbjct: 190 STATGAGGASSGSSSTSMKSRILVVSANDDNDVKYIPIMNTIFAAQKMKLSIDIIKLGDE 249
Query: 185 QNSAFLQQ 192
+NS++LQQ
Sbjct: 250 ENSSYLQQ 257
>gi|323331310|gb|EGA72728.1| Tfb4p [Saccharomyces cerevisiae AWRI796]
Length = 409
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 100/215 (46%), Gaps = 24/215 (11%)
Query: 2 ASAPSKLYSDDVSLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLN 55
A + ++ + SL+ V+++ P W++ S + L ++ FLNA L N N
Sbjct: 83 ARSRKQVTEESPSLLTVIIEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSAN 142
Query: 56 QVVVIATGYNSCDYVY-DSSSTGNQSVGNGRMPSLCATLLQNL-EEFMNKDE-------- 105
+V VIA Y+Y +S+S S + S + ++ F N DE
Sbjct: 143 KVAVIAAYSQGIKYLYPESTSALKASESENKTRSDLKIINSDMYRRFRNVDETLVEEIYK 202
Query: 106 --QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHP-QPRILCLQ----GSPDGPE 158
+L K++ E S L+G++S L Y+ R+ + + + R+L L S D
Sbjct: 203 LFELEKKQIEQNSQRSTLAGAMSAGLTYVNRISKESVTTSLKSRLLVLTCGSGSSKDEIF 262
Query: 159 QYVAIMNAIFSAQRSMVPIDSCYL-GAQNSAFLQQ 192
QY+ IMN IFSA + PID + G++ S FLQQ
Sbjct: 263 QYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQ 297
>gi|366988553|ref|XP_003674043.1| hypothetical protein NCAS_0A11040 [Naumovozyma castellii CBS 4309]
gi|342299906|emb|CCC67662.1| hypothetical protein NCAS_0A11040 [Naumovozyma castellii CBS 4309]
Length = 338
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 96/210 (45%), Gaps = 24/210 (11%)
Query: 6 SKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQ------FLTHVLAFLNAILTLNQLNQVVV 59
S + + SL+ V++D P W+ ++ L +L FLNA L N NQV V
Sbjct: 16 SSITEETPSLLTVIVDITPKLWAELDEEINEKGNLINVLKSLLVFLNAHLAFNSSNQVAV 75
Query: 60 IATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQ-----EPEG 114
IA Y++ +S + V +G+ L F N DE L + E E
Sbjct: 76 IAAHSQGIKYLFPKNSISVKGVNSGK-KDLSIINKDMYRRFRNVDETLVDELYALFEEEL 134
Query: 115 R-----IACSLLSGSLSMALCYIQRVFRS-GLLHPQPRILCL----QG-SPDGPEQYVAI 163
+ S LSG++S L YI RV + + + R++ L +G S D QY+ I
Sbjct: 135 KQVNTVTQKSTLSGAMSAGLTYINRVTKELEAISLKSRLMVLTCGGKGESKDEIFQYIPI 194
Query: 164 MNAIFSAQRSMVPIDSCYL-GAQNSAFLQQ 192
MN IFSA + PID + G++ S FLQQ
Sbjct: 195 MNCIFSATKIKCPIDVVKIGGSKESTFLQQ 224
>gi|451848115|gb|EMD61421.1| hypothetical protein COCSADRAFT_173760 [Cochliobolus sativus
ND90Pr]
Length = 377
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 104/236 (44%), Gaps = 64/236 (27%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ SS+LS S L ++L F+NA L N+V VIA+ + ++Y
Sbjct: 20 SLLAIVLDTNPHAWAHLSSTLSLSTALANILVFINAHLASGNTNEVAVIASHSHKTTFLY 79
Query: 72 DSS----STGNQSVGNGRM-----------------------PSLCATLLQNLEEFMNKD 104
S + + NG + + +T+LQN + +N+
Sbjct: 80 PSPVAPQAQSRNGIANGDVEMNGIGDDKGQHTAESANKYRPFAVVESTILQNFVKLLNET 139
Query: 105 EQLGKQEPEGRIACSLLSGSLSMALCYIQR---------------------------VFR 137
++ + +L+ G+LS+AL +I + V R
Sbjct: 140 KESHLEA----TPTTLIGGALSLALTHINKQTILHAPTAASAESASLAALADSENTHVDR 195
Query: 138 SGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
L RIL + S D QY+ +MN+IF+AQR +PID L A ++ LQQ
Sbjct: 196 VSLTS---RILIVSVSGDLANQYIPVMNSIFAAQRKRIPIDILKL-AGDTVLLQQA 247
>gi|195470427|ref|XP_002087508.1| GE15755 [Drosophila yakuba]
gi|194173609|gb|EDW87220.1| GE15755 [Drosophila yakuba]
Length = 299
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 96/201 (47%), Gaps = 20/201 (9%)
Query: 4 APSKLYSDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
A SK + L+V++LDTNP + + +Q L V+AF NA L N++ V++
Sbjct: 6 AASKEAESCIDLLVIVLDTNPSQHIVRQNPQNLTQILEAVIAFGNAHLMQKAQNKLAVVS 65
Query: 62 TGYNSCDYVYDSSSTG---NQSVGNGRMPSLCATLLQNLEEFMNKDEQLGK---QEPEGR 115
+++ +++Y Q G SL ++ +QLG P
Sbjct: 66 CSHHATNFLYPLPRRQVELRQVDGQYEAFSLVEKTVK---------QQLGSILMNAPRLS 116
Query: 116 IAC-SLLSGSLSMALCYIQRVFRSGL--LHPQPRILCLQGSPDGPEQYVAIMNAIFSAQR 172
C SLL+GS+SMALCYI R+ R+ + RIL + GS + QY+ MN F+AQ+
Sbjct: 117 APCESLLAGSMSMALCYISRLQRNVAPGVKMHSRILVITGSNECASQYMTFMNVFFTAQK 176
Query: 173 SMVPIDSCYLGAQNSAFLQQC 193
+ ID+C L S Q C
Sbjct: 177 LGITIDTCALDKTLSLLQQGC 197
>gi|401838123|gb|EJT41898.1| TFB4-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 338
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 94/203 (46%), Gaps = 24/203 (11%)
Query: 14 SLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
SL+ V+++ P W++ S + L ++ FLNA L N N+V VIA
Sbjct: 24 SLLTVIVEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSANKVAVIAAHSQGI 83
Query: 68 DYVYDSSSTGNQSVGNGRMPSLCATLLQN--LEEFMNKDE----------QLGKQEPEGR 115
Y+Y S+T ++ + + ++ + F N DE ++ K + E
Sbjct: 84 KYLYPESTTTTEASKSEKKSRSDLKIINSDMYRRFRNVDEALVEEIYKLFEVEKNQIEQN 143
Query: 116 IACSLLSGSLSMALCYIQRVFRSGLLHP-QPRILCLQ----GSPDGPEQYVAIMNAIFSA 170
S L+G++S L Y+ R+ + + + R+L L S D QY+ IMN IFSA
Sbjct: 144 SQRSTLAGAMSAGLTYVNRISKESVTTSLKSRLLVLTCGSGSSKDEIFQYIPIMNCIFSA 203
Query: 171 QRSMVPIDSCYL-GAQNSAFLQQ 192
+ PID + G++ S FLQQ
Sbjct: 204 TKMKCPIDVVKIGGSKESTFLQQ 226
>gi|365757943|gb|EHM99813.1| Tfb4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 338
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 94/203 (46%), Gaps = 24/203 (11%)
Query: 14 SLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
SL+ V+++ P W++ S + L ++ FLNA L N N+V VIA
Sbjct: 24 SLLTVIVEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSANKVAVIAAHSQGI 83
Query: 68 DYVYDSSSTGNQSVGNGRMPSLCATLLQN--LEEFMNKDE----------QLGKQEPEGR 115
Y+Y S+T ++ + + ++ + F N DE ++ K + E
Sbjct: 84 KYLYPESTTTTEASKSEKKSRSDLKIINSDMYRRFRNVDEALVEEIYKLFEVEKNQIEQN 143
Query: 116 IACSLLSGSLSMALCYIQRVFRSGLLHP-QPRILCLQ----GSPDGPEQYVAIMNAIFSA 170
S L+G++S L Y+ R+ + + + R+L L S D QY+ IMN IFSA
Sbjct: 144 SQRSTLAGAMSAGLTYVNRISKESVTTSLKSRLLVLTCGSGSSKDEIFQYIPIMNCIFSA 203
Query: 171 QRSMVPIDSCYL-GAQNSAFLQQ 192
+ PID + G++ S FLQQ
Sbjct: 204 TKMKCPIDVVKIGGSKESTFLQQ 226
>gi|365762534|gb|EHN04068.1| Tfb4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 338
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 100/215 (46%), Gaps = 24/215 (11%)
Query: 2 ASAPSKLYSDDVSLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLN 55
A + ++ + SL+ V+++ P W++ S + L ++ FLNA L N N
Sbjct: 12 ARSRKQVTEESPSLLTVIIEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSAN 71
Query: 56 QVVVIATGYNSCDYVY-DSSSTGNQSVGNGRMPSLCATLLQNL-EEFMNKDE-------- 105
+V VIA Y+Y +S+S S + S + ++ F N DE
Sbjct: 72 KVAVIAAYSQGIKYLYPESTSALKASESENKTRSDLKIINSDMYRRFRNVDETLVEEIYK 131
Query: 106 --QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHP-QPRILCLQ----GSPDGPE 158
+L K++ E S L+G++S L Y+ R+ + + + R+L L S D
Sbjct: 132 LFELEKKQIEQNSQRSTLAGAMSAGLTYVNRISKESVTTSLKSRLLVLTCGSGSSKDEIF 191
Query: 159 QYVAIMNAIFSAQRSMVPIDSCYL-GAQNSAFLQQ 192
QY+ IMN IFSA + PID + G++ S FLQQ
Sbjct: 192 QYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQ 226
>gi|323335143|gb|EGA76433.1| Tfb4p [Saccharomyces cerevisiae Vin13]
Length = 338
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 100/215 (46%), Gaps = 24/215 (11%)
Query: 2 ASAPSKLYSDDVSLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLN 55
A + ++ + SL+ V+++ P W++ S + L ++ FLNA L N N
Sbjct: 12 ARSRKQVTEESPSLLTVIIEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSAN 71
Query: 56 QVVVIATGYNSCDYVY-DSSSTGNQSVGNGRMPSLCATLLQNL-EEFMNKDE-------- 105
+V VIA Y+Y +S+S S + S + ++ F N DE
Sbjct: 72 KVAVIAAYSQGIKYLYPESTSALKASESENKTRSDLKIINSDMYRRFRNVDETLVEEIYK 131
Query: 106 --QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHP-QPRILCLQ----GSPDGPE 158
+L K++ E S L+G++S L Y+ R+ + + + R+L L S D
Sbjct: 132 LFELEKKQIEQNSQRSTLAGAMSAGLTYVNRISKESVTTSLKSRLLVLTCGSGSSKDEIF 191
Query: 159 QYVAIMNAIFSAQRSMVPIDSCYL-GAQNSAFLQQ 192
QY+ IMN IFSA + PID + G++ S FLQQ
Sbjct: 192 QYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQ 226
>gi|6325313|ref|NP_015381.1| Tfb4p [Saccharomyces cerevisiae S288c]
gi|62901135|sp|Q12004.1|TFB4_YEAST RecName: Full=RNA polymerase II transcription factor B subunit 4;
AltName: Full=General transcription and DNA repair
factor IIH subunit TFB4; Short=TFIIH subunit TFB4;
AltName: Full=RNA polymerase II transcription factor B
34 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p34 subunit
gi|805037|emb|CAA89174.1| unknown [Saccharomyces cerevisiae]
gi|1314125|emb|CAA95001.1| unknown [Saccharomyces cerevisiae]
gi|190407994|gb|EDV11259.1| RNA polymerase II transcription factor B subunit 4 [Saccharomyces
cerevisiae RM11-1a]
gi|256268932|gb|EEU04279.1| Tfb4p [Saccharomyces cerevisiae JAY291]
gi|285815586|tpg|DAA11478.1| TPA: Tfb4p [Saccharomyces cerevisiae S288c]
gi|323350201|gb|EGA84348.1| Tfb4p [Saccharomyces cerevisiae VL3]
gi|392296067|gb|EIW07170.1| Tfb4p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 338
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 100/215 (46%), Gaps = 24/215 (11%)
Query: 2 ASAPSKLYSDDVSLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLN 55
A + ++ + SL+ V+++ P W++ S + L ++ FLNA L N N
Sbjct: 12 ARSRKQVTEESPSLLTVIIEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSAN 71
Query: 56 QVVVIATGYNSCDYVY-DSSSTGNQSVGNGRMPSLCATLLQNL-EEFMNKDE-------- 105
+V VIA Y+Y +S+S S + S + ++ F N DE
Sbjct: 72 KVAVIAAYSQGIKYLYPESTSALKASESENKTRSDLKIINSDMYRRFRNVDETLVEEIYK 131
Query: 106 --QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHP-QPRILCLQ----GSPDGPE 158
+L K++ E S L+G++S L Y+ R+ + + + R+L L S D
Sbjct: 132 LFELEKKQIEQNSQRSTLAGAMSAGLTYVNRISKESVTTSLKSRLLVLTCGSGSSKDEIF 191
Query: 159 QYVAIMNAIFSAQRSMVPIDSCYL-GAQNSAFLQQ 192
QY+ IMN IFSA + PID + G++ S FLQQ
Sbjct: 192 QYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQ 226
>gi|312385025|gb|EFR29618.1| hypothetical protein AND_01266 [Anopheles darlingi]
Length = 516
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 94/191 (49%), Gaps = 16/191 (8%)
Query: 12 DVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
D SL+V++LDTNP + +Q L ++AF NA L N++ V+A +++ ++
Sbjct: 284 DSSLLVIVLDTNPSQRIIREKPHNLTQCLDSIVAFGNAHLMQKAQNKLAVLACHHHATEF 343
Query: 70 VYDSSSTG---NQSVGNGRMPSLC-ATLLQNLEEFMNKDEQLGKQEPEGRIAC-SLLSGS 124
+Y + Q G + +L T+ Q L + K P + SLL+GS
Sbjct: 344 LYPTPGKPLDIRQVDGQYEVFTLVEKTIKQKLANLI-------KTAPHLTLPTESLLAGS 396
Query: 125 LSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYL 182
+SMALCYI R+ R+ + R+L + GS + QY+ MN F+AQ+ V +D C L
Sbjct: 397 MSMALCYIARINRNKPPGSKINSRVLVVTGSNECASQYMTYMNVFFTAQKQGVVVDVCAL 456
Query: 183 GAQNSAFLQQC 193
S Q C
Sbjct: 457 DKALSLLQQGC 467
>gi|151942841|gb|EDN61187.1| transcription initiation factor TFIIH subunit [Saccharomyces
cerevisiae YJM789]
gi|259150209|emb|CAY87012.1| Tfb4p [Saccharomyces cerevisiae EC1118]
gi|349581866|dbj|GAA27023.1| K7_Tfb4p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 338
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 100/215 (46%), Gaps = 24/215 (11%)
Query: 2 ASAPSKLYSDDVSLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLN 55
A + ++ + SL+ V+++ P W++ S + L ++ FLNA L N N
Sbjct: 12 ARSRKQVTEESPSLLTVIIEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSAN 71
Query: 56 QVVVIATGYNSCDYVY-DSSSTGNQSVGNGRMPSLCATLLQNL-EEFMNKDE-------- 105
+V VIA Y+Y +S+S S + S + ++ F N DE
Sbjct: 72 KVAVIAAYSQGIKYLYPESTSALKASESENKTRSDLKIINSDMYRRFRNVDETLVEEIYK 131
Query: 106 --QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHP-QPRILCLQ----GSPDGPE 158
+L K++ E S L+G++S L Y+ R+ + + + R+L L S D
Sbjct: 132 LFELEKKQIEQNSQRSTLAGAMSAGLTYVNRISKESVTTSLKSRLLVLTCGSGSSKDEIF 191
Query: 159 QYVAIMNAIFSAQRSMVPIDSCYL-GAQNSAFLQQ 192
QY+ IMN IFSA + PID + G++ S FLQQ
Sbjct: 192 QYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQ 226
>gi|195388531|ref|XP_002052933.1| GJ17829 [Drosophila virilis]
gi|194149390|gb|EDW65088.1| GJ17829 [Drosophila virilis]
Length = 300
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 96/201 (47%), Gaps = 20/201 (9%)
Query: 4 APSKLYSDDVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
A +K + L+ ++LDTNP + + +Q L V+AF NA L +++ VI+
Sbjct: 7 AANKEAEASIDLLAIVLDTNPSQQIVRQNPQNLTQILEAVIAFGNAHLMQKAQSKLAVIS 66
Query: 62 TGYNSCDYVY---DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGK---QEPEGR 115
+++ D++Y Q G SL ++ +QLG P
Sbjct: 67 CSHHATDFLYPLPGRQVELRQIDGQYEAFSLVEKTVK---------QQLGSILMNAPRLS 117
Query: 116 IAC-SLLSGSLSMALCYIQRVFR--SGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQR 172
+C SLL+GS+SMALCYI R+ R + + RIL L GS + QY+ MN F+AQ+
Sbjct: 118 ASCESLLAGSMSMALCYISRLQRNVAAGVKMHSRILVLTGSNECASQYMTYMNVFFTAQK 177
Query: 173 SMVPIDSCYLGAQNSAFLQQC 193
+ ID+C L S Q C
Sbjct: 178 LGIVIDTCALDKTLSLLQQGC 198
>gi|323346291|gb|EGA80581.1| Tfb4p [Saccharomyces cerevisiae Lalvin QA23]
Length = 313
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 100/215 (46%), Gaps = 24/215 (11%)
Query: 2 ASAPSKLYSDDVSLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLN 55
A + ++ + SL+ V+++ P W++ S + L ++ FLNA L N N
Sbjct: 12 ARSRKQVTEESPSLLTVIIEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSAN 71
Query: 56 QVVVIATGYNSCDYVY-DSSSTGNQSVGNGRMPSLCATLLQNL-EEFMNKDE-------- 105
+V VIA Y+Y +S+S S + S + ++ F N DE
Sbjct: 72 KVAVIAAYSQGIKYLYPESTSALKASESENKTRSDLKIINSDMYRRFRNVDETLVEEIYK 131
Query: 106 --QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHP-QPRILCLQ----GSPDGPE 158
+L K++ E S L+G++S L Y+ R+ + + + R+L L S D
Sbjct: 132 LFELEKKQIEQNSQRSTLAGAMSAGLTYVNRISKESVTTSLKSRLLVLTCGSGSSKDEIF 191
Query: 159 QYVAIMNAIFSAQRSMVPIDSCYL-GAQNSAFLQQ 192
QY+ IMN IFSA + PID + G++ S FLQQ
Sbjct: 192 QYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQ 226
>gi|336371329|gb|EGN99668.1| hypothetical protein SERLA73DRAFT_53296 [Serpula lacrymans var.
lacrymans S7.3]
Length = 297
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 91/200 (45%), Gaps = 21/200 (10%)
Query: 11 DDVSLVVVLLDTNPFFWSSSS-------LSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
+ S + V+LD +P W S+ LS FL+ +LAFLNA + N + V
Sbjct: 2 EKASHLSVILDLSPTQWHLSAQSSNQYPLSIHSFLSQLLAFLNAHIASKHENTLAVFGAF 61
Query: 64 YNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQN---LEEFMNKDEQLGKQEPEGRIACSL 120
+Y S+ V S + + + + MN+ + LG + E A
Sbjct: 62 PGKSVMLYSSTDPVADDVPPADANSYSSFKVVDFTIVRSIMNEFDALGNLDEEPPCA--- 118
Query: 121 LSGSLSMALC--YIQRVFRSG------LLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQR 172
L G+L+ ALC I F S + P PRIL L SPD Y+ IMN+IFSAQ+
Sbjct: 119 LVGALTKALCCKSISAHFHSPNAVEDPAVLPDPRILILSVSPDLSTSYIPIMNSIFSAQK 178
Query: 173 SMVPIDSCYLGAQNSAFLQQ 192
V ID C + ++ FLQQ
Sbjct: 179 LKVTIDVCKVYGPDAVFLQQ 198
>gi|45187550|ref|NP_983773.1| ADL323Cp [Ashbya gossypii ATCC 10895]
gi|62901344|sp|Q75B93.1|TFB4_ASHGO RecName: Full=RNA polymerase II transcription factor B subunit 4;
AltName: Full=RNA polymerase II transcription factor B
34 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p34 subunit
gi|44982288|gb|AAS51597.1| ADL323Cp [Ashbya gossypii ATCC 10895]
gi|374106985|gb|AEY95893.1| FADL323Cp [Ashbya gossypii FDAG1]
Length = 341
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 90/211 (42%), Gaps = 25/211 (11%)
Query: 7 KLYSDDVSLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
+L + SL+ +++DTNP W+ Q L + FLNA L+ N NQV VI
Sbjct: 17 QLVEETPSLLTLVIDTNPKLWAEFDREVGKKGQLMQVLKSTIVFLNAHLSFNNSNQVSVI 76
Query: 61 ATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDE-----------QLGK 109
A Y+Y + S + F N DE Q K
Sbjct: 77 AACSRGIKYLYPQADDKEGSTKKKKSEDRSIINRNMYRGFRNVDEAVVEELYRVFQQESK 136
Query: 110 QEPEG--RIACSLLSGSLSMALCYIQRV-FRSGLLHPQPRILCL----QGSPDGPEQYVA 162
Q +G + S LSG++S L YI R+ + + + R+L + S D QY+
Sbjct: 137 QLEDGVPQPFRSTLSGAMSAGLTYINRITHETEGVSLKSRLLVITCGSSASKDEVFQYIP 196
Query: 163 IMNAIFSAQRSMVPIDSCYLGA-QNSAFLQQ 192
IMN IFSA + PID +G + S FLQQ
Sbjct: 197 IMNCIFSATKMKCPIDVVKVGGVKESTFLQQ 227
>gi|327276109|ref|XP_003222813.1| PREDICTED: LOW QUALITY PROTEIN: general transcription factor IIH
subunit 3-like [Anolis carolinensis]
Length = 360
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 101/205 (49%), Gaps = 28/205 (13%)
Query: 11 DDVSLVVVLLDTNPFFWSS-----SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
D+++L+V+++DTNP +W S L+ S+ L + N+ L +N+ N++ VIA+
Sbjct: 61 DELNLLVIVVDTNPIWWGKQALIGSKLTLSKCLDASMVLGNSHLFMNRNNKLAVIASHIQ 120
Query: 66 SCDYVY---------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQ 110
++Y D++ G++ + ++ T+ + +++ M K + Q
Sbjct: 121 ESRFLYPGKRWEIIDIFGEAVDANMYGSKDGKYELLTTVNETIAEEIQDLMTK-SGIKWQ 179
Query: 111 EPEGRIACSLLSGSLSMALCYIQRVFR--SGLLHPQPRILCLQGSPDGPEQYVAIMNAIF 168
+ E + L L+ AL YI RV + S + RIL ++ + D QY+ MN IF
Sbjct: 180 QTE-----TCLYXYLTKALWYIHRVSKTESASQEIKSRILVIKAAEDSALQYMNFMNVIF 234
Query: 169 SAQRSMVPIDSCYLGAQNSAFLQQC 193
+AQ+ + ID+C L + + Q C
Sbjct: 235 AAQKQNILIDACVLESDSGLLQQAC 259
>gi|307175391|gb|EFN65408.1| General transcription factor IIH subunit 3 [Camponotus floridanus]
Length = 292
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 90/189 (47%), Gaps = 12/189 (6%)
Query: 12 DVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
D SL+V++LD NP + SQ L + F NA L + N++ ++A +S +
Sbjct: 6 DTSLLVIVLDINPVQRIVKQETKILSQCLDSTVVFANAHLMQSSNNELAIMACHGHSAKF 65
Query: 70 VYDSSSTGNQSVGNGRMPSLC---ATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLS 126
+Y + +G+ T+ Q L++ +N+ E SL+SG+LS
Sbjct: 66 LYPCENMAEIRQIDGQYEKFTMVERTVRQQLQQVINEISMNTPLNTE-----SLISGALS 120
Query: 127 MALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGA 184
MALCYI R+ R + + R+L + S D QY+ MN F+AQR V +D C L
Sbjct: 121 MALCYIARLEREKFANQKLHSRMLVITASNDSAMQYMNYMNIFFTAQRMNVILDVCSLDQ 180
Query: 185 QNSAFLQQC 193
+ + Q C
Sbjct: 181 ELTLLQQGC 189
>gi|46138695|ref|XP_391038.1| hypothetical protein FG10862.1 [Gibberella zeae PH-1]
gi|408390605|gb|EKJ69997.1| hypothetical protein FPSE_09842 [Fusarium pseudograminearum CS3096]
Length = 355
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 101/216 (46%), Gaps = 34/216 (15%)
Query: 11 DDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
D SL+ ++LDTNP W+S S L S+ + ++L F+NA L + N+V +IA + +
Sbjct: 17 DTPSLLSIVLDTNPRAWASLNSLLPLSRAIANILVFVNAHLAFSNANRVALIAAHVDRAE 76
Query: 69 YVYDSSSTGNQSV-GNGRM--PSLCATLLQNLEEFMNKD-------EQLGKQEPEGRIAC 118
++Y + ++ G+ M S T EF + +L Q E ++
Sbjct: 77 WLYPTPPKPSRDASGDVEMNDASQTQTSANKFPEFAQIETAVLSGIRKLMDQTKEADLSA 136
Query: 119 SL--LSGSLSMALCYIQRVFRSGLLHP-------------------QPRILCLQGSPDGP 157
+ +SG+L++ALC+I + ++ L P + RIL + S P
Sbjct: 137 TTTQISGALTLALCHINKAAQA-LCSPTANLEDSHKGSSSTSPPTVRGRILVISVSDSEP 195
Query: 158 EQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
QY+ MNA+F+A + V ID+ L + + Q C
Sbjct: 196 SQYIPTMNAVFAAAHTQVAIDTLSLTGEPTFLEQAC 231
>gi|115387571|ref|XP_001211291.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114195375|gb|EAU37075.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 380
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 100/239 (41%), Gaps = 64/239 (26%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ V+LDTNP W+ SL S + ++L FLNA L N N+V V+A+ + ++Y
Sbjct: 20 SLLTVILDTNPHAWAVLEPSLPLSTAIANILVFLNAHLACNYANEVAVVASHSQTATWLY 79
Query: 72 DSSSTGNQSVG-----------NGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACS- 119
+ + ++ NG P A+ + F +EQ+ + E A S
Sbjct: 80 PRETRHDTTIASGTDRDGDIAMNGSAP---ASQVNKYRPFRIVEEQVTQHLRELMEATSG 136
Query: 120 ---------LLSGSLSMALCYIQR------------------------------------ 134
+++G+L++AL +I R
Sbjct: 137 ADVQATTSTMMAGALTLALSHINRRSLAWSEAHGADTAGDGAGASAGGGGGGGSGAGGAG 196
Query: 135 -VFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
+ L + I+ + GS D QY+ +MN IF+ QR +PID C L ++ FLQQ
Sbjct: 197 RAGGAEGLQSRILIVSVSGSSDSAHQYIPMMNGIFACQRLHIPIDVCKLSG-DAVFLQQ 254
>gi|353240140|emb|CCA72023.1| related to TFIIH basal transcription factor complex p34 subunit
[Piriformospora indica DSM 11827]
Length = 355
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 94/200 (47%), Gaps = 21/200 (10%)
Query: 11 DDVSLVVVLLDTNPFFWSSSS--------LSFSQFLTHVLAFLNAILTLNQLNQVVVIAT 62
++ S + V+LD +P W SS LS + FL + FLNA L N + V
Sbjct: 2 ENASHLSVILDLSPSQWYQSSQTSGDKHPLSLAHFLPQLFVFLNAHLASQHENTLTVFGA 61
Query: 63 GYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLS 122
+Y S+ T Q+ + T+ + + +N++ + ++ E IA L
Sbjct: 62 FPGKSSMLYSSNETYIQADADSNTFQPFKTMNSVIAQRLNEELESLPEDAEAPIA---LV 118
Query: 123 GSLSMALCYI-QRVFRSGLLH---------PQPRILCLQGSPDGPEQYVAIMNAIFSAQR 172
G+L+ +LC I +R S L+ P PR+L + SPD Y+ IMN+IF AQ+
Sbjct: 119 GALTKSLCTINRRSHPSDTLNATSPNPSKLPTPRLLVISVSPDLSASYIPIMNSIFCAQK 178
Query: 173 SMVPIDSCYLGAQNSAFLQQ 192
+ ID C + ++ FLQQ
Sbjct: 179 LKLSIDVCKIFGPDNVFLQQ 198
>gi|322709828|gb|EFZ01403.1| transcription factor TFIIH subunit Tfb4, putative [Metarhizium
anisopliae ARSEF 23]
Length = 358
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 104/219 (47%), Gaps = 47/219 (21%)
Query: 14 SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ +++DTNP W++ + LS S+ + ++L F+NA L + +NQV ++A N ++Y
Sbjct: 20 SLLSIVIDTNPRAWAALDNVLSISKAIANILVFVNAHLAFSNVNQVAIVAAHVNRAVWLY 79
Query: 72 ------------------DSSSTGNQSVGNGRMPSLC---ATLLQNLEEFMNKDEQLGKQ 110
D SS ++ N + P +L ++++ M++
Sbjct: 80 PTPPQTSPKDTSDDVHMNDVSSESPRNSAN-KYPQFAQIETAVLGSMQKLMSE-----TT 133
Query: 111 EPEGRIACSLLSGSLSMALCYIQRVFR------SGLLH-PQP----------RILCLQGS 153
E + + LSG+L++ALC+I + + S L QP RIL + S
Sbjct: 134 EQDLEATTTQLSGALTLALCHINKASQALSGASSSLAEVAQPSANAAPPMKGRILVVSVS 193
Query: 154 PDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
P QY+ MNA+F+A + V ID+ L N FLQQ
Sbjct: 194 DSEPTQYIPTMNAVFAAAHAQVAIDTLSLSG-NPTFLQQ 231
>gi|440633398|gb|ELR03317.1| hypothetical protein GMDG_06064 [Geomyces destructans 20631-21]
Length = 363
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 99/224 (44%), Gaps = 50/224 (22%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ +L S+ + +++ F+NA L N NQV V+A+ + ++Y
Sbjct: 20 SLLTIVLDTNPHAWALLHDTLPLSKAVANLMVFINAHLAFNNANQVAVVASHSHRAAWLY 79
Query: 72 ----DSSSTGNQSV---GNGRMPS-------------LCATLLQNLEEFMNKDEQLGKQE 111
++ G +V G RM + LL +L E ++ E
Sbjct: 80 PRPPNARGAGEDTVMTDGYDRMTKAPNDANKYRPFSLIEHDLLTSLRELIDST----TTE 135
Query: 112 PEGRIACSLLSGSLSMALCYIQR---------VFRSGLLHPQP--------------RIL 148
+ ++G+L++AL Y + V SG HP RIL
Sbjct: 136 DVSSTTTTQMAGALTLALSYSNKATVTYNESGVSSSGKSHPDGGENPTDDVPRGLLCRIL 195
Query: 149 CLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
+ S D QY+ IMN F+AQR +PID L ++ FLQQ
Sbjct: 196 VISVSGDLAHQYIPIMNTTFAAQRLRIPIDILKLSG-DTVFLQQ 238
>gi|346324613|gb|EGX94210.1| transcription factor TFIIH subunit Tfb4 [Cordyceps militaris CM01]
Length = 366
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 102/227 (44%), Gaps = 54/227 (23%)
Query: 14 SLVVVLLDTNPFFWS-----SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
SL+ V++DTNP W+ S LS + + ++L F+NA L + NQV VIA N
Sbjct: 20 SLLSVIIDTNPRAWAVLDDGSLPLSLTAAVANLLLFINAHLAFSGANQVAVIAAHVNRAV 79
Query: 69 YVYDSSSTG----NQSVGNG------------------RMPSLC---ATLLQNLEEFMNK 103
++Y SS + + + +G + P AT+L +L++ M +
Sbjct: 80 WLYPSSHSPKPIQDNTSADGDVAMADAPAAATTPSSANKYPQFAQIEATVLGSLKKLMAE 139
Query: 104 DEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFR---------------SGLLHPQP--- 145
E + + LSG+L++ALC+ + R SG P P
Sbjct: 140 -----TTERDLDSTTTQLSGALTLALCHTNKASRALGASDTAIHEAAQTSGTTPPSPMKG 194
Query: 146 RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
RIL L S QY+ MNA+F+A V ID+ L A ++ FLQQ
Sbjct: 195 RILVLSVSDSESSQYIPTMNAVFAAAHGRVAIDALAL-AGDATFLQQ 240
>gi|322698540|gb|EFY90309.1| transcription factor TFIIH subunit Tfb4, putative [Metarhizium
acridum CQMa 102]
Length = 358
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 103/218 (47%), Gaps = 45/218 (20%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ +++DTNP W+ L S+ + ++L F+NA L + +NQV V+A N ++Y
Sbjct: 20 SLLSIVIDTNPRAWAVLDDVLPISKAIANILVFVNAHLAFSNVNQVAVVAAHVNRAVWLY 79
Query: 72 DS--SSTGNQSVGNGRM---------------PSLC---ATLLQNLEEFMNKDEQLGKQE 111
+ ++ + G+ M P +L ++++ M++ E
Sbjct: 80 PTPPQTSPKDTSGDVHMIDVPGDSPRNSANKYPQFAQIETAVLASMQKLMSE-----TTE 134
Query: 112 PEGRIACSLLSGSLSMALCYIQRVFR-----SGLLH--PQP----------RILCLQGSP 154
+ + LSG+L++ALC+I + + SG L QP RIL + S
Sbjct: 135 QDLEATTTQLSGALTLALCHINKASQALSGASGSLAEVAQPSANAALPMKGRILVVSVSD 194
Query: 155 DGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
P QY+ IMNA+F+A + V ID+ L N FLQQ
Sbjct: 195 SEPSQYIPIMNAVFAAAHAQVAIDTLCLSG-NPTFLQQ 231
>gi|396462438|ref|XP_003835830.1| similar to RNA polymerase II transcription factor B subunit 4
[Leptosphaeria maculans JN3]
gi|312212382|emb|CBX92465.1| similar to RNA polymerase II transcription factor B subunit 4
[Leptosphaeria maculans JN3]
Length = 375
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 105/235 (44%), Gaps = 64/235 (27%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ SS+LS S L ++L F+NA L N+V VIA+ + ++Y
Sbjct: 20 SLLAIVLDTNPHAWAHLSSTLSLSAALANILVFINAHLASGNANEVAVIASHSHKTTFLY 79
Query: 72 --DSSSTGNQSVGNGRM----------PSLCA-------------TLLQNLEEFMNK-DE 105
SSS + NG + P + +L+N + +++ +E
Sbjct: 80 PTPSSSPRPRKAANGDVEMNGAGGNSEPHMAENPNKYRPFAIVENAILRNFAKLLDETNE 139
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQP-------------------- 145
+ P +L+ G+LS+AL +I + +LH
Sbjct: 140 RHLAATP-----TTLIGGALSLALTHIN---KQTMLHAPTAASAESASLAALADAENTHV 191
Query: 146 -------RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
RIL + S D QY+ +MN+IF+AQR +PID L A ++ LQQ
Sbjct: 192 DRIPLTSRILIVSVSGDLANQYIPVMNSIFAAQRKRIPIDILKL-AGDTVLLQQA 245
>gi|302413233|ref|XP_003004449.1| RNA polymerase II transcription factor B subunit 4 [Verticillium
albo-atrum VaMs.102]
gi|261357025|gb|EEY19453.1| RNA polymerase II transcription factor B subunit 4 [Verticillium
albo-atrum VaMs.102]
Length = 384
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 99/202 (49%), Gaps = 34/202 (16%)
Query: 11 DDVSLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
+ SL V+LD NP WS S L S+ L++VL +LNA L + NQV VIA+ N
Sbjct: 17 ETASLCTVILDVNPRAWSALSDVLPISKALSNVLIYLNANLAFSNTNQVAVIASHTNRAV 76
Query: 69 YVYDS--------SSTGNQSVGN-----GRMPSLCA-TLLQNLEEFMNKD-EQLGKQEPE 113
++Y + S+ G+ ++ + ++PS T +E+ + + ++L + E
Sbjct: 77 WLYPTKSEPSNTPSTDGDVAMSDAPPKKAKVPSANKFTQFAQVEDAVLRSLKKLLDETTE 136
Query: 114 GRIACSL--LSGSLSMALCYIQRV-------FRSGLLHP--------QPRILCLQGSPDG 156
+ C+ LSG+L++AL +I +V S P IL + S
Sbjct: 137 ADLDCTTTQLSGALTLALAHINKVNLSYTASLSSDTAKPMTTAAPGLSSHILVVSVSDSD 196
Query: 157 PEQYVAIMNAIFSAQRSMVPID 178
P QY++ MNA+F+A + +PID
Sbjct: 197 PSQYISTMNAVFAAAHASIPID 218
>gi|346972888|gb|EGY16340.1| RNA polymerase II transcription factor B subunit 4 [Verticillium
dahliae VdLs.17]
Length = 398
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 99/202 (49%), Gaps = 34/202 (16%)
Query: 11 DDVSLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
+ SL V+LD NP WS S L S+ L++VL +LNA L + NQV VIA+ N
Sbjct: 17 ETASLSTVILDVNPRAWSALSDVLPISKALSNVLIYLNANLAFSNTNQVAVIASHTNRAV 76
Query: 69 YVYDS--------SSTGNQSVGNG-----RMPSLCA-TLLQNLEEFMNKD-EQLGKQEPE 113
++Y + S+ G+ ++ + ++PS T +E+ + + ++L + E
Sbjct: 77 WLYPTKPEPSNVPSTDGDVAMSDAPPKKSKVPSANKFTQFAQVEDAVLRSLKKLLDETTE 136
Query: 114 GRIACSL--LSGSLSMALCYIQRV-------FRSGLLHP--------QPRILCLQGSPDG 156
+ C+ LSG+L++AL +I +V S P IL + S
Sbjct: 137 ADLDCTTTQLSGALTLALAHINKVNLSYTASLSSDTAKPMTTAAPGLSSHILVVSVSDSD 196
Query: 157 PEQYVAIMNAIFSAQRSMVPID 178
P QY++ MNA+F+A + +PID
Sbjct: 197 PSQYISTMNAVFAAAHASIPID 218
>gi|190347434|gb|EDK39698.2| hypothetical protein PGUG_03796 [Meyerozyma guilliermondii ATCC
6260]
Length = 378
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 98/227 (43%), Gaps = 42/227 (18%)
Query: 7 KLYSDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
+ ++DD SL+ V+LD NP W + + + + ++ F+NA L+LN N+V +
Sbjct: 38 ETFTDDPSLLTVILDLNPLGWYNIRNRTTVKEVTKSLIVFMNAHLSLNNSNRVAFLTASP 97
Query: 65 NSCDYVY-----DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACS 119
+ ++Y D T N V G L E N+ + + + E S
Sbjct: 98 SGARFLYPNTMSDQKDTANTLVNRGMYRQFRIVDETVLSELNNEFQAVAQSELTDY--KS 155
Query: 120 LLSGSLSMALCYIQRVFR---------------------------------SGLLHPQPR 146
+SG+LS+AL Y R+ S L+ + R
Sbjct: 156 TVSGALSLALTYTHRMLTLDESISTTTASAISTSTNVASNSSAAGAGSTGASNLISMKSR 215
Query: 147 ILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
IL + + +Y+ IMN+IF+AQ+ V ID LG+++ ++LQQ
Sbjct: 216 ILVVSPDDNDDIRYIPIMNSIFAAQKMKVSIDVVKLGSKDVSYLQQA 262
>gi|195995769|ref|XP_002107753.1| hypothetical protein TRIADDRAFT_51576 [Trichoplax adhaerens]
gi|190588529|gb|EDV28551.1| hypothetical protein TRIADDRAFT_51576 [Trichoplax adhaerens]
Length = 276
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 99/192 (51%), Gaps = 32/192 (16%)
Query: 14 SLVVVLLDTNPFFW--SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
+L+++++DTNP W ++ + F++++ +++ ++N+ L ++ N + VIA+ N Y+Y
Sbjct: 9 NLLILVIDTNPLAWLPFAAEMDFTRYIENIVVYINSHLMMDHRNSIAVIASHVNKSCYLY 68
Query: 72 -----------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSL 120
+S+ST N + +GR L +N + +E +A +
Sbjct: 69 SPHMDNWIKNTNSNSTVNIA-KDGRHEEL---------SHINYIIETRVKELVQEMATAD 118
Query: 121 LSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180
+ + Q + G + RIL ++ +PD QY+ IMN IF+AQ+ VPID+C
Sbjct: 119 IHNHVD------QDLRNKG--QAKSRILVIKCTPDTSFQYLPIMNCIFTAQKYNVPIDAC 170
Query: 181 YLGAQNSAFLQQ 192
+ ++S FLQQ
Sbjct: 171 VI-EKDSGFLQQ 181
>gi|400593294|gb|EJP61268.1| transcription factor tfb4 [Beauveria bassiana ARSEF 2860]
Length = 373
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 103/234 (44%), Gaps = 61/234 (26%)
Query: 14 SLVVVLLDTNPFFWS-----SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
SL+ V++DTNP W+ LS + ++L F+NA L + NQV VIA N
Sbjct: 20 SLLSVIIDTNPRAWAVLDDGDLPLSLPTAVANLLLFINAHLAFSGANQVAVIAAHVNRAV 79
Query: 69 YVYD------------SSSTGNQSVGN----------GRMPS----------LCATLLQN 96
++Y +S N S G+ G PS + AT+L +
Sbjct: 80 WLYPSSQQQQQNLLSNTSPRPNPSDGDVDMADAPSATGTTPSSANKYPPFAHIEATVLAS 139
Query: 97 LEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFR---------------SGLL 141
L++ M + E + + LSG+L++ALC+ + R SG
Sbjct: 140 LKQLMAE-----TTERDLDSTTTQLSGALTLALCHNNKAGRALSASDTALLDAAQASGAT 194
Query: 142 HPQP---RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
P P RIL L S QY+ IMNA+F+A S V ID+ L A ++ FLQQ
Sbjct: 195 APPPMKGRILVLSVSDSESAQYIPIMNAVFAAAHSHVAIDTLAL-AGDATFLQQ 247
>gi|332019667|gb|EGI60141.1| General transcription factor IIH subunit 3 [Acromyrmex echinatior]
Length = 292
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 22/194 (11%)
Query: 12 DVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
+ SL+V++LD NP + SQ L + F NA L + N++ +++ + +
Sbjct: 6 ETSLLVIVLDVNPMQRIVKQETKILSQCLDSTIVFANAHLMQSSNNELAIMSCHGHGARF 65
Query: 70 VYDSSSTGNQSVGNGRMPSLC---ATLLQNLEEFMNK---DEQLGKQEPEGRIACSLLSG 123
+Y + +G+ T+ Q L++ +N+ D L + SL+SG
Sbjct: 66 LYPCENAIEIRQMDGQYEKFTMVERTVRQQLQQVINEISMDVPLNME--------SLISG 117
Query: 124 SLSMALCYIQRVFRSGL----LHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDS 179
+LSMALCYI R+ R + LHP R+L + S D QY+ MN F+AQR V +D
Sbjct: 118 ALSMALCYIARLEREKVAGQKLHP--RMLVITASNDSATQYMNYMNIFFTAQRMNVILDV 175
Query: 180 CYLGAQNSAFLQQC 193
C L + + Q C
Sbjct: 176 CSLDQELTLLQQGC 189
>gi|326437202|gb|EGD82772.1| hypothetical protein PTSG_03422 [Salpingoeca sp. ATCC 50818]
Length = 311
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 99/238 (41%), Gaps = 77/238 (32%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL V+++D +P W S S + + + FLNA L+++ N + VI ++Y
Sbjct: 3 SLFVLIVDLHPARWKQLSEDASLDEAMNQICVFLNAQLSVHVSNTIAVIGAAPKKSMFLY 62
Query: 72 DSSSTGNQSVGNGRMPS----------LCATLLQNLEEFMNKDEQLGKQEPEGRIACSLL 121
S+ +MPS + AT+L N + N EQ G++ P S L
Sbjct: 63 PSAV---------KMPSPDDRQELFSEMNATILANATKLFN--EQSGERHP------SDL 105
Query: 122 SGSLSMALCYIQRVFRSGLLHPQ------------------------------------- 144
+G+LS ALC+I R R L PQ
Sbjct: 106 AGALSKALCFINRTVRGTSLQPQHTTASSSVTSRFIAGDKATPASSSSSSSSSAPKAAGR 165
Query: 145 ----------PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
PRI + SPD +Y A MN IF+AQ++ VPID C +G + +A LQQ
Sbjct: 166 DRVSSGARVTPRIGVVSVSPDSSVEYFAAMNCIFAAQKNDVPIDVCAMG-EEAAILQQ 222
>gi|392593946|gb|EIW83271.1| transcription factor Tfb4 [Coniophora puteana RWD-64-598 SS2]
Length = 327
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 91/203 (44%), Gaps = 27/203 (13%)
Query: 11 DDVSLVVVLLDTNPFFWSSSS-------LSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
+ S + V++D +P W S+ LS FL+ +LAFLN + N + V
Sbjct: 2 EKASHLSVIVDLSPTQWHLSAQPSNPYPLSIQSFLSQLLAFLNTHVAAKHENTLAVYGAL 61
Query: 64 YNSCDYVYDSSSTGNQ----SVGNGRMPS--LCATLLQNLEEFMNKDEQLGKQEPEGRIA 117
+Y SS + S N P + AT++ + + + ++ P
Sbjct: 62 PGKSVLLYSSSDPAPENAPASDANAFTPFKLVDATVVDRIMQEFEAVSEAEEEAP----- 116
Query: 118 CSLLSGSLSMALCYIQRVFRSGLLH--------PQPRILCLQGSPDGPEQYVAIMNAIFS 169
CSL+S +L+ ALCYI R+ P PRIL L SPD Y+ IMN IFS
Sbjct: 117 CSLVS-ALAKALCYINRITHPSTSAGPEDPNELPDPRILILSVSPDLSSSYIPIMNCIFS 175
Query: 170 AQRSMVPIDSCYLGAQNSAFLQQ 192
AQ+ V ID C + + FLQQ
Sbjct: 176 AQKLKVTIDVCKVYGPETVFLQQ 198
>gi|169775241|ref|XP_001822088.1| transcription factor TFIIH complex subunit [Aspergillus oryzae
RIB40]
gi|83769951|dbj|BAE60086.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391872974|gb|EIT82049.1| RNA polymerase II transcription initiation protein [Aspergillus
oryzae 3.042]
Length = 376
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 102/238 (42%), Gaps = 65/238 (27%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
+L+ V+LDTNP W+ SL S+ + ++L FLNA L N N+V V+A+ ++Y
Sbjct: 20 ALLTVVLDTNPHAWALLEDSLPLSKAIANILVFLNAHLACNYANEVAVVASHSQKAAWLY 79
Query: 72 --------------------DSSSTGNQSVGNGRMPS------LCATLLQNLEEFMNKDE 105
SS+ N + G G++ + + NL E M
Sbjct: 80 PHENPATKISHDADGDVSMNGSSTNNNTTEGPGQVNKYRPFRIVEEQVTHNLRELM---- 135
Query: 106 QLGKQEPEGRIACS-LLSGSLSMALCYIQR-------------------------VFRSG 139
P+ + S +++G+L++AL +I R SG
Sbjct: 136 -ASTSGPDVKANNSTMMAGALTLALSHINRRSIAWAEAHGADTAAETSGGGPPSGGHASG 194
Query: 140 L-----LHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
L + I+ + G+ D QY+ IMN+IF+ QR +PID C L ++ FLQQ
Sbjct: 195 TDTTEGLQSRILIVSVSGASDSAHQYIPIMNSIFACQRLHIPIDVCKLSG-DAVFLQQ 251
>gi|321470747|gb|EFX81722.1| hypothetical protein DAPPUDRAFT_224195 [Daphnia pulex]
Length = 301
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 19/195 (9%)
Query: 12 DVSLVVVLLDTNPF-------FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
+ LV +++D P + S ++ ++ F NA L N++ VIA
Sbjct: 9 ETPLVAIVIDATPAKKFASQAIIDNGSTMMNRIFDALIGFGNAHLMQGSHNKLAVIACNS 68
Query: 65 NSCDYVY-----DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACS 119
S ++Y DS S N+ + + + L E + KD + + + S
Sbjct: 69 KSTKFLYPSENGDSKSYHNRPGQYDMFAKVDSDIRHGLSELILKDSI----DHDSTTSDS 124
Query: 120 LLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPI 177
LL G+++ ALC+I ++ R L Q PRIL + GS D QY+ MN F+AQ+ V I
Sbjct: 125 LLGGAMARALCHIHKIQRELSLSHQLKPRILVVSGSSDSALQYMTFMNVFFTAQKENVVI 184
Query: 178 DSCYLGAQNSAFLQQ 192
D C + + +S LQQ
Sbjct: 185 DCCMMDS-DSGLLQQ 198
>gi|350407575|ref|XP_003488130.1| PREDICTED: general transcription factor IIH subunit 3-like [Bombus
impatiens]
Length = 292
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 91/192 (47%), Gaps = 18/192 (9%)
Query: 12 DVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
+ SL++V+LD NP + +Q L + F NA L + NQ+ VIA + +
Sbjct: 6 ETSLLIVVLDVNPVQRIIKQETRILTQCLDSTVVFANAHLMQSSNNQLAVIACHSHGAKF 65
Query: 70 VYDSSSTGNQSVGNGRMPSLC---ATLLQNLEEFMNK---DEQLGKQEPEGRIACSLLSG 123
+Y +G+ T+ Q L++ +N+ D+ L + SL+SG
Sbjct: 66 LYPCEKPLEIRQIDGQYEKFTMIERTIRQQLQQVINEISMDKPLNGE--------SLISG 117
Query: 124 SLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCY 181
+L+MALCY+ R+ R + + RIL + S D QY+ MN F+AQ+ + +D C
Sbjct: 118 ALTMALCYVARLEREKVASEKIYSRILVITASNDSATQYMNYMNIFFTAQKMGIILDVCS 177
Query: 182 LGAQNSAFLQQC 193
L + + Q C
Sbjct: 178 LDQELTLLQQGC 189
>gi|146416891|ref|XP_001484415.1| hypothetical protein PGUG_03796 [Meyerozyma guilliermondii ATCC
6260]
Length = 378
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 98/227 (43%), Gaps = 42/227 (18%)
Query: 7 KLYSDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
+ ++DD SL+ V+LD NP W + + + + ++ F+NA L+LN N+V +
Sbjct: 38 ETFTDDPSLLTVILDLNPLGWYNIRNRTTVKEVTKSLIVFMNAHLSLNNSNRVAFLTASP 97
Query: 65 NSCDYVY-----DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACS 119
+ ++Y D T N V G L E N+ + + + E S
Sbjct: 98 SGARFLYPNTMSDQKDTANTLVNRGMYRQFRIVDETVLLELNNEFQAVAQSELTDY--KS 155
Query: 120 LLSGSLSMALCYIQRVFR---------------------------------SGLLHPQPR 146
+SG+LS+AL Y R+ S L+ + R
Sbjct: 156 TVSGALSLALTYTHRMLTLDESISTTTASAISTSTNVASNSSAAGAGSTGASNLISMKSR 215
Query: 147 ILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
IL + + +Y+ IMN+IF+AQ+ V ID LG+++ ++LQQ
Sbjct: 216 ILVVSPDDNDDIRYIPIMNSIFAAQKMKVSIDVVKLGSKDVSYLQQA 262
>gi|403292309|ref|XP_003937192.1| PREDICTED: tectonic-2 [Saimiri boliviensis boliviensis]
Length = 940
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 96/188 (51%), Gaps = 26/188 (13%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDANPIWWGKQALKESQFTLSKCMDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVYDSSSTGNQSVGN-----GRMPSLCA---------TLLQNLEEFMNKD--EQLG 108
++Y N +G+ G PS LL + E + ++ + +
Sbjct: 65 QESRFLYPGK---NGRLGDFFGDPGNPPSEFNPSGSKDGKYELLTSANEVIAEEIKDLMT 121
Query: 109 KQEPEGRIACSLLSGSLSMALCYIQRVFR--SGLLHPQPRILCLQGSPDGPEQYVAIMNA 166
K + +G+ +LL+GSL+ ALCYI R+ + + RIL ++ + D QY+ MN
Sbjct: 122 KSDIKGQHTETLLAGSLAKALCYIHRMNKEIKDNQEMKSRILVIKAAEDSALQYMNFMNV 181
Query: 167 IFSAQRSM 174
IF+AQ+ +
Sbjct: 182 IFAAQKQL 189
>gi|238496129|ref|XP_002379300.1| transcription factor TFIIH subunit Tfb4, putative [Aspergillus
flavus NRRL3357]
gi|220694180|gb|EED50524.1| transcription factor TFIIH subunit Tfb4, putative [Aspergillus
flavus NRRL3357]
Length = 367
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 102/238 (42%), Gaps = 65/238 (27%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
+L+ V+LDTNP W+ SL S+ + ++L FLNA L N N+V V+A+ ++Y
Sbjct: 11 ALLTVVLDTNPHAWALLEDSLPLSKAIANILVFLNAHLACNYANEVAVVASHSQKAAWLY 70
Query: 72 --------------------DSSSTGNQSVGNGRMPS------LCATLLQNLEEFMNKDE 105
SS+ N + G G++ + + NL E M
Sbjct: 71 PHENPATKISHDADGDVSMNGSSTNNNTTEGPGQVNKYRPFRIVEEQVTHNLRELM---- 126
Query: 106 QLGKQEPEGRIACS-LLSGSLSMALCYIQR-------------------------VFRSG 139
P+ + S +++G+L++AL +I R SG
Sbjct: 127 -ASTSGPDVKANNSTMMAGALTLALSHINRRSIAWAEAHGADTAAETSGGGPPSGGHASG 185
Query: 140 L-----LHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
L + I+ + G+ D QY+ IMN+IF+ QR +PID C L ++ FLQQ
Sbjct: 186 TDTTEGLQSRILIVSVSGASDSAHQYIPIMNSIFACQRLHIPIDVCKLSG-DAVFLQQ 242
>gi|110757998|ref|XP_394705.3| PREDICTED: general transcription factor IIH subunit 3 [Apis
mellifera]
Length = 292
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 12/189 (6%)
Query: 12 DVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
+ SL++++LD NP + +Q L + F NA L + NQ+ VIA + +
Sbjct: 6 ETSLLIIILDVNPVQRIIKQETRILTQCLDSTIVFANAHLMQSSNNQLAVIACHSHGAKF 65
Query: 70 VYDSSSTGNQSVGNGRMPSLCA---TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLS 126
+Y +G+ T+ Q L++ +N E + G SL+SG+L+
Sbjct: 66 LYPCEDALEIRQIDGQYEKFTMIELTVRQQLQKVIN--EITSNKILNGE---SLISGALT 120
Query: 127 MALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGA 184
MALCYI R+ R + + RIL + S D QY+ MN F+AQ+ V +D C L
Sbjct: 121 MALCYIARLEREKIAGEKLYSRILVITASNDSATQYMNYMNIFFTAQKMGVILDVCSLDQ 180
Query: 185 QNSAFLQQC 193
+ + Q C
Sbjct: 181 ELTLLQQGC 189
>gi|380030634|ref|XP_003698948.1| PREDICTED: general transcription factor IIH subunit 3-like [Apis
florea]
Length = 292
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 12/189 (6%)
Query: 12 DVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
+ SL++++LD NP + +Q L + F NA L + NQ+ VIA + +
Sbjct: 6 ETSLLIIILDVNPVQRIIKQETRILTQCLDSTIVFANAHLMQSSNNQLAVIACHSHGAKF 65
Query: 70 VYDSSSTGNQSVGNGRMPSLCA---TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLS 126
+Y +G+ T+ Q L++ +N E + G SL+SG+L+
Sbjct: 66 LYPCEDALEIRQIDGQYEKFTMIELTVRQQLQKVIN--EITSNKLLSGE---SLISGALT 120
Query: 127 MALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGA 184
MALCYI R+ R + + RIL + S D QY+ MN F+AQ+ V +D C L
Sbjct: 121 MALCYIARLEREKIAGEKLYSRILVITASNDSATQYMNYMNIFFTAQKMGVILDVCSLDQ 180
Query: 185 QNSAFLQQC 193
+ + Q C
Sbjct: 181 ELTLLQQGC 189
>gi|340717520|ref|XP_003397229.1| PREDICTED: general transcription factor IIH subunit 3-like [Bombus
terrestris]
Length = 292
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 18/192 (9%)
Query: 12 DVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
+ SL++++LD NP + +Q L + F NA L + NQ+ VIA + +
Sbjct: 6 ETSLLIIVLDVNPVQRIIKQETRILTQCLDSTVVFANAHLMQSSNNQLAVIACHSHGAKF 65
Query: 70 VYDSSSTGNQSVGNGRMPSLC---ATLLQNLEEFMNK---DEQLGKQEPEGRIACSLLSG 123
+Y +G+ T+ Q L++ +N+ D+ L + SL+SG
Sbjct: 66 LYPCEKPLEIRQIDGQYEKFTMIERTIRQQLQQVINEISMDKPLNGE--------SLISG 117
Query: 124 SLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCY 181
+L+MALCY+ R+ R + + RIL + S D QY+ MN F+AQ+ + +D C
Sbjct: 118 ALTMALCYVARLEREKVASEKIYSRILVITASNDSATQYMNYMNIFFTAQKMGIILDVCS 177
Query: 182 LGAQNSAFLQQC 193
L + + Q C
Sbjct: 178 LDQELTLLQQGC 189
>gi|448098480|ref|XP_004198937.1| Piso0_002332 [Millerozyma farinosa CBS 7064]
gi|359380359|emb|CCE82600.1| Piso0_002332 [Millerozyma farinosa CBS 7064]
Length = 376
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 102/247 (41%), Gaps = 60/247 (24%)
Query: 5 PSKLYSDDVSLVVVLLDTNPFFW--SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIAT 62
P++ DD SL+ V+LD P W ++ + +L FLNA L+LN NQV I
Sbjct: 14 PTQPTVDDPSLLTVILDLTPHGWFKIKHHITVQEVTKALLVFLNAHLSLNNSNQVAFIVC 73
Query: 63 GYNSCDYVY-----------DSSSTGNQSVGNGRMPSLCATLLQN---------LEEFMN 102
+ ++Y D+ S+ ++ P+L T + LEE
Sbjct: 74 SPDGAKFLYPNPGKNFDGIQDNGSSKGETGNKSSNPNLVNTEMYRQFRIVDEAVLEELNE 133
Query: 103 KDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFR--------------------SGLLH 142
+ L K + S LSG+LS+AL Y R+ SG +
Sbjct: 134 VLKSLSKSNSVNKTR-STLSGALSLALTYTNRMLNLDQSISTTTASAFNATTKSTSGTSN 192
Query: 143 PQ-----------------PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQ 185
RIL + + D +Y+ IMN++F+AQ+ +PID LG+
Sbjct: 193 VTSSGSSASAVSTNYTSMLSRILVISANDDDDVKYIPIMNSMFAAQKMRLPIDVAKLGSI 252
Query: 186 NSAFLQQ 192
+S++LQQ
Sbjct: 253 SSSYLQQ 259
>gi|70997489|ref|XP_753492.1| transcription factor TFIIH subunit Tfb4 [Aspergillus fumigatus
Af293]
gi|66851128|gb|EAL91454.1| transcription factor TFIIH subunit Tfb4, putative [Aspergillus
fumigatus Af293]
gi|159126779|gb|EDP51895.1| transcription factor TFIIH subunit Tfb4, putative [Aspergillus
fumigatus A1163]
Length = 387
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 99/241 (41%), Gaps = 63/241 (26%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ SL S + ++L F+NA L N N+V V+A+ ++Y
Sbjct: 20 SLLTIVLDTNPHAWALLEDSLPLSTAIANILVFVNAHLACNYANEVAVVASHSQKATWLY 79
Query: 72 ----------DSSSTGNQSVGNGRMPSLCATL--------LQNLEEFMNKDEQLGKQEPE 113
+S TG G+ M A + F +EQ+ + E
Sbjct: 80 PCETKEDNGKSTSKTGRDEDGDVAMNGSGAGAGAGFAAAQVNKYRPFRIVEEQVTRNLRE 139
Query: 114 ----------GRIACSLLSGSLSMALCYIQR--------------------------VFR 137
++++G+L++AL +I R R
Sbjct: 140 LMDSTSGADVAATTSTMMAGALTLALSHINRRSIAWADAHGGTAAGPPGAVEAGSSGAGR 199
Query: 138 SGL------LHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQ 191
+G L + I+ + GS D QY+ IMN IF+ QR +PID C L ++ FLQ
Sbjct: 200 AGADTGAEGLQSRILIISVSGSTDSAHQYIPIMNCIFACQRLHIPIDVCKLSG-DAVFLQ 258
Query: 192 Q 192
Q
Sbjct: 259 Q 259
>gi|255070041|ref|XP_002507102.1| RNA polymerase II transcription factor B subunit 4 [Micromonas sp.
RCC299]
gi|226522377|gb|ACO68360.1| RNA polymerase II transcription factor B subunit 4 [Micromonas sp.
RCC299]
Length = 291
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 3/167 (1%)
Query: 28 SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMP 87
S L L ++ F++ L LN N +VV+A C Y+Y+S + + + P
Sbjct: 35 SDDGLGIMHTLRDLVLFISCYLALNLQNDLVVLALHNGDCHYLYESPKSKLRRGVRVQPP 94
Query: 88 --SLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQP 145
+C ++ + + Q + + S L+ LSMALC+IQR+ +G
Sbjct: 95 VSDVCKEIITRIFRISSSPLQSPSGDASSSGSESPLAAGLSMALCHIQRL-GTGSFRGLR 153
Query: 146 RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
RI CL SP QY+ +MN IF+AQ++ V IDS L +S L+Q
Sbjct: 154 RIFCLLRSPVSQRQYIPMMNVIFAAQQAFVTIDSYSLCDMHSDILEQ 200
>gi|119479015|ref|XP_001259536.1| transcription factor TFIIH subunit Tfb4, putative [Neosartorya
fischeri NRRL 181]
gi|119407690|gb|EAW17639.1| transcription factor TFIIH subunit Tfb4, putative [Neosartorya
fischeri NRRL 181]
Length = 385
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 99/241 (41%), Gaps = 63/241 (26%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ SL S + ++L F+NA L N N+V V+A+ ++Y
Sbjct: 20 SLLTIVLDTNPHAWALLKDSLPLSTAIANILVFVNAHLACNYANEVAVVASHSQKATWLY 79
Query: 72 ----------DSSSTGNQSVGNGRMPSLCATL--------LQNLEEFMNKDEQLGKQEPE 113
+S TG G+ M A + F +EQ+ + E
Sbjct: 80 PRETKEDNGKSNSKTGRDEDGDVAMNGSGAGAGAGSAAAQVNKYRPFRIVEEQVTRNLRE 139
Query: 114 ----------GRIACSLLSGSLSMALCYIQR--------------------------VFR 137
++++G+L++AL +I R R
Sbjct: 140 LMDSTSGADVAATTSTMMAGALTLALSHINRRSIAWADAHGGTAAGPPGAVEAGSSGAGR 199
Query: 138 SGL------LHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQ 191
+G L + I+ + GS D QY+ IMN IF+ QR +PID C L ++ FLQ
Sbjct: 200 AGTDTGAEGLQSRILIISVSGSTDSAHQYIPIMNCIFACQRLHIPIDVCKLSG-DAVFLQ 258
Query: 192 Q 192
Q
Sbjct: 259 Q 259
>gi|383855904|ref|XP_003703450.1| PREDICTED: general transcription factor IIH subunit 3-like
[Megachile rotundata]
Length = 292
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 91/192 (47%), Gaps = 18/192 (9%)
Query: 12 DVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
+ SL++++LD NP + +Q L + F NA L + NQ+ +IA + +
Sbjct: 6 ETSLLIIVLDVNPVQRIVKQETRILTQCLDSTIVFANAHLMQSSNNQLAMIACHSHGAKF 65
Query: 70 VYDSSSTGNQSVGNGRMPSLC---ATLLQNLEEFMNK---DEQLGKQEPEGRIACSLLSG 123
+Y +G+ T+ Q L++ +N+ D+ L + SL+SG
Sbjct: 66 LYPCEKPVEIRQIDGQYEKFTMVERTVRQQLQQVINEISMDKPLNGE--------SLISG 117
Query: 124 SLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCY 181
+L+MALCYI R+ R + + RIL + S D QY+ MN F+AQ+ V +D C
Sbjct: 118 ALTMALCYIARLEREKVAGQKLYSRILTITASNDSATQYMNYMNIFFTAQKMGVILDVCS 177
Query: 182 LGAQNSAFLQQC 193
L + + Q C
Sbjct: 178 LDQELTLLQQGC 189
>gi|448102380|ref|XP_004199788.1| Piso0_002332 [Millerozyma farinosa CBS 7064]
gi|359381210|emb|CCE81669.1| Piso0_002332 [Millerozyma farinosa CBS 7064]
Length = 376
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 102/246 (41%), Gaps = 58/246 (23%)
Query: 5 PSKLYSDDVSLVVVLLDTNPFFW--SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIAT 62
P++ DD SL+ V+LD P W ++ + +L FLNA L+LN NQV I
Sbjct: 14 PAQPTVDDPSLLTVILDLTPHGWFKIKDHITVQEVTKALLVFLNAHLSLNNTNQVAFIVC 73
Query: 63 GYNSCDYVYDSSST---GNQSVGNGRMPSLCATLLQNL------EEFMNKDEQLGKQEPE 113
+ ++Y + G Q GN + + T NL +F DE + ++ E
Sbjct: 74 SPDGAKFLYPNPGKNFDGIQDNGNSKGEAGTKTPSPNLVNTEMYRQFRIVDEAVLEELNE 133
Query: 114 ----------GRIACSLLSGSLSMALCYIQRVFR--------------------SGLLHP 143
S LSG+LS+AL Y R+ SG +
Sbjct: 134 VIKSLSNSNSVNKTRSTLSGALSLALTYTNRMLNLDQSISTTTASAFNATTKSTSGTTNA 193
Query: 144 Q-----------------PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQN 186
RIL + + D +Y+ IMN++F+AQ+ +PID LG+ +
Sbjct: 194 TGSGSSASAVSTNYTSMLSRILVISANDDDDVKYIPIMNSMFAAQKMRLPIDVAKLGSVS 253
Query: 187 SAFLQQ 192
S++LQQ
Sbjct: 254 SSYLQQ 259
>gi|403216997|emb|CCK71492.1| hypothetical protein KNAG_0H00770 [Kazachstania naganishii CBS
8797]
Length = 342
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 97/214 (45%), Gaps = 44/214 (20%)
Query: 14 SLVVVLLDTNPFFW------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
SL+ V++D P W + + + + L ++ FLNA L N NQV +IA+
Sbjct: 24 SLLTVVVDLTPKLWAEFDEETKEASNIIKMLRALIVFLNAHLAFNTSNQVAIIASHSQGI 83
Query: 68 DYVYDSSS----TGNQSVGN-----------GRMPSLCATLLQNLEEFMNKDEQLGKQEP 112
Y+Y SS T ++VG R ++ TL++ L +++G E
Sbjct: 84 KYLYPRSSNRSETEAETVGKKDQFIINPGMYSRFRNVDETLVEELYTLFK--QEMG--EV 139
Query: 113 EGRIACSLLSGSLSMALCYIQRVFRSGLLHP------QPRILCLQ-GSPDGPE------Q 159
E S L G++ AL Y R LLH + RI+ + G+ +G Q
Sbjct: 140 EKATQKSTLPGAMLAALAYTNR-----LLHDYETKSLKSRIMVMTCGNKNGTSQKEEIFQ 194
Query: 160 YVAIMNAIFSAQRSMVPIDSCYL-GAQNSAFLQQ 192
Y+ IMN IFSA + PID + GA+ S FLQQ
Sbjct: 195 YIPIMNCIFSAAKLKCPIDVVKIGGARKSTFLQQ 228
>gi|255953875|ref|XP_002567690.1| Pc21g06450 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589401|emb|CAP95542.1| Pc21g06450 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 374
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 105/236 (44%), Gaps = 62/236 (26%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ +++DTNP W+ SL S+ + ++L F+NA L N N+V V+A+ ++Y
Sbjct: 20 SLLTIVIDTNPHAWAVLEDSLPLSKAIANILVFINAHLACNYANEVAVVASHSQKAAWLY 79
Query: 72 DSSST---------GNQSVGNGRMPSLCAT------------LLQNLEEFMNKDEQLGKQ 110
S S G+ ++ + T + +NL+E M D G
Sbjct: 80 PSHSEPQYRPADHDGDVTMNGTSDTTTPKTNKYRPFRIVEEQVTRNLKELM--DSTTG-D 136
Query: 111 EPEGRIACSLLSGSLSMALCYI-QRVFRSGLLHP-------------------------- 143
+ G ++ ++L+G+L++AL +I +R H
Sbjct: 137 DLRGNMS-TMLAGALTLALSHINRRTLAWAEEHGGANTEDAAADGNGGGTTSTNRYSASN 195
Query: 144 -----QPRILC--LQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
Q RIL + GS D QY+ +MN+IF+ QR +PID C L ++ FLQQ
Sbjct: 196 EDERLQSRILVVSVSGSTDAAHQYIPVMNSIFACQRLSIPIDVCKLSG-DAVFLQQ 250
>gi|307105142|gb|EFN53393.1| hypothetical protein CHLNCDRAFT_13819, partial [Chlorella
variabilis]
Length = 135
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
Query: 144 QP-RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
QP R+LCL +PD P QY+++MNAIFSAQRS V ID+C LG ++S FLQQ
Sbjct: 2 QPARVLCLTAAPDVPSQYISVMNAIFSAQRSGVLIDACQLGRRHSTFLQQ 51
>gi|195118052|ref|XP_002003554.1| GI21952 [Drosophila mojavensis]
gi|193914129|gb|EDW12996.1| GI21952 [Drosophila mojavensis]
Length = 299
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 91/193 (47%), Gaps = 22/193 (11%)
Query: 13 VSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYV 70
+ L+ ++LDTNP + + +Q L V+AF NA L N++ V++ + + +++
Sbjct: 16 IDLLAIVLDTNPSQLIVRQNPQNLTQILEAVIAFGNAHLMQKAQNKLAVLSCSHYTTEFL 75
Query: 71 YDSSSTGNQSVGNGRMPSLCATLLQNLEEF----MNKDEQLGK---QEPEGRIAC-SLLS 122
+ GR L + E F +QLG P C SLL+
Sbjct: 76 FPLP---------GRQVEL-RQIDAQYEAFSLVEKTVKQQLGSILMNAPRLSAPCESLLA 125
Query: 123 GSLSMALCYIQRVFRS--GLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180
GS+SMALCYI R+ R+ + RIL + GS + QY+ MN F+AQ+ + +D+C
Sbjct: 126 GSMSMALCYISRLQRNVPAGVKMHSRILVITGSNECASQYMTFMNVFFTAQKLGIVVDTC 185
Query: 181 YLGAQNSAFLQQC 193
L S Q C
Sbjct: 186 ALDKTLSLLQQGC 198
>gi|351698565|gb|EHB01484.1| General transcription factor IIH subunit 3, partial [Heterocephalus
glaber]
Length = 315
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 102/236 (43%), Gaps = 38/236 (16%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLN---------------------AI 48
D+++L+V+++DTNP +W SL SQ H + A+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQSLKESQCWDHKCVLPHPAVIGGSHRFCCGHSPTRGGGAL 64
Query: 49 LTLNQLNQVVVIATGYNS--CDYVYDSSSTGNQ----SVGNGRMPSLCAT---LLQNLEE 99
L L Q + G N D+ D S +G+ L A + + +++
Sbjct: 65 FFLVHLQQCRFLYPGKNGRLGDFFGDPGSPSPDYNPSGSKDGKYELLTAANDVIAEEIKD 124
Query: 100 FMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGP 157
M + G+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D
Sbjct: 125 LMTTSDIKGQHTE------TLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSA 178
Query: 158 EQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQCMSDRLLTLLVEYIISLNNWM 213
QY+ MN IF+AQ+ + ID+C L + + Q C L L V + SL ++
Sbjct: 179 LQYMNFMNVIFAAQKQNILIDACVLDSDSGLLQQACDITGGLYLKVPQMASLLQYL 234
>gi|363751126|ref|XP_003645780.1| hypothetical protein Ecym_3480 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889414|gb|AET38963.1| Hypothetical protein Ecym_3480 [Eremothecium cymbalariae
DBVPG#7215]
Length = 341
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 103/216 (47%), Gaps = 34/216 (15%)
Query: 7 KLYSDDVSLVVVLLDTNPFFWSSSSLSFSQ------FLTHVLAFLNAILTLNQLNQVVVI 60
+L D SL+ +++DTNP W+ Q L ++ FLNA L+ N NQV VI
Sbjct: 17 QLVEDTPSLLTLVIDTNPKLWADLDKEVGQEGQLLQALKSIIIFLNAHLSFNNSNQVSVI 76
Query: 61 ATGYNSCDYVY-------DSSSTG----NQSVGNGRM----PSLCATLLQNLEE-FMNK- 103
A Y+Y D S ++S+ N M ++ T+++ L + F+ +
Sbjct: 77 AAYSRGIKYLYPPADELEDMSEKKTLHEDKSIINRDMYRGFRNVDETVVEELYKLFIQEI 136
Query: 104 -DEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGL-LHPQPRILCLQ-GSPDGPE-- 158
D++ K +P S LSG++S L YI R+ + + R+L + GS G +
Sbjct: 137 NDQENSKIQP----IKSTLSGAMSAGLTYINRIVKENESTSLKSRLLVITCGSNAGKDEI 192
Query: 159 -QYVAIMNAIFSAQRSMVPIDSCYLGA-QNSAFLQQ 192
QY+ IMN IFSA + ID +G + S FLQQ
Sbjct: 193 FQYIPIMNCIFSATKMRCSIDVVKIGGTEESTFLQQ 228
>gi|452978955|gb|EME78718.1| hypothetical protein MYCFIDRAFT_124295, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 339
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 97/245 (39%), Gaps = 71/245 (28%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
+L+ V+LDTNP W+ SLS SQ + ++L F+NA + +N N+V V+A+ +++Y
Sbjct: 4 ALLTVILDTNPHAWALLEHSLSLSQLVVNLLVFVNAHIAINPANRVAVVASHSECAEWLY 63
Query: 72 DSSSTGNQSVGNGR-------------------------------MPSLCATLLQNLEEF 100
+ + NG + + NL
Sbjct: 64 PTPARAQSHAANGNGNGTHVEMADGDPAPRGGPVQAPDDANKYRPFAHIEHAITTNLRRL 123
Query: 101 MNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQR---VFRSGLLHPQ------------- 144
M+ Q ++++G+L+ AL YI + SG Q
Sbjct: 124 MSSTSAEALQS----TPATMMAGALTRALAYISKQSQTLPSGAASSQQFNYSDPNSVAGG 179
Query: 145 -----------------PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNS 187
RIL L S D +QY+ IMN+IF+ QR +PID L A ++
Sbjct: 180 NEASSGTSQGNNMLGLTSRILILSVSGDLADQYIPIMNSIFACQRLSIPIDILKL-AGDT 238
Query: 188 AFLQQ 192
FLQQ
Sbjct: 239 VFLQQ 243
>gi|358396042|gb|EHK45429.1| hypothetical protein TRIATDRAFT_221909 [Trichoderma atroviride IMI
206040]
Length = 367
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 101/223 (45%), Gaps = 45/223 (20%)
Query: 14 SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ +++DTNP W++ S LS SQ ++++L F+NA L + NQV VIA N ++Y
Sbjct: 20 SLLSIVIDTNPRAWAALESRLSLSQAISNILVFVNAHLAFSNTNQVAVIAAHVNRAVWLY 79
Query: 72 D--------SSSTGNQSVGNGRMPSLCA-TLLQNLEEFMNKDEQLGKQE----------- 111
+ G+ +M + A T + NK Q + E
Sbjct: 80 PAAAAAAQKPLAAARDHSGDVQMQDVSAETNNSSSSPSANKYPQFAQIESSVFSSIQSLM 139
Query: 112 PEGRI-----ACSLLSGSLSMALCYIQRVFRS--------------GLLHPQP---RILC 149
E + + LSG+L++ALC I + ++ P P RI+
Sbjct: 140 AETTVQDLDQVTTQLSGALTLALCRINKASQALSASDTTLSNAAPVNSAAPPPVKSRIVV 199
Query: 150 LQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
+ S P QY+ MNA+F+A + V ID+ L A +S FLQQ
Sbjct: 200 ISVSDSEPSQYIPTMNAVFAAAHNQVAIDTIAL-AGDSTFLQQ 241
>gi|145254849|ref|XP_001398778.1| transcription factor TFIIH complex subunit [Aspergillus niger CBS
513.88]
gi|134084362|emb|CAK48702.1| unnamed protein product [Aspergillus niger]
Length = 379
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 102/235 (43%), Gaps = 57/235 (24%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ + SL S + ++L F+NA L N N+V V+++ + ++Y
Sbjct: 20 SLLTIILDTNPHAWALLNPSLPLSTAIANILVFINAHLACNYANEVAVVSSHTSQATWLY 79
Query: 72 DSS------------STGNQSVGNGRMPSLCATLLQNLEEFMNKDEQ--------LGKQE 111
S G+ S+ + + P T + F +EQ + +
Sbjct: 80 PVEKATTTTTANNLDSDGDISMRSQQPPPSTHTNINKYRPFRIVEEQVSTHLHNLMSQTT 139
Query: 112 PEG--RIACSLLSGSLSMALCYIQR------------VFRSGLLHP-------------- 143
PE ++++G+L++AL +I R + + P
Sbjct: 140 PETLQSTTSTMMAGALTLALSHINRRTLAWNEAHGGDIDTTNPNDPSSTSSSSHNTKGTA 199
Query: 144 ----QPRILCL--QGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
Q RIL L S QY+ IMNAIF+ QR +PID C + ++ FLQQ
Sbjct: 200 ESTLQSRILILSVSSSTGSAHQYIPIMNAIFACQRLHIPIDVCKVSG-DAVFLQQ 253
>gi|366998281|ref|XP_003683877.1| hypothetical protein TPHA_0A03670 [Tetrapisispora phaffii CBS 4417]
gi|357522172|emb|CCE61443.1| hypothetical protein TPHA_0A03670 [Tetrapisispora phaffii CBS 4417]
Length = 344
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 101/220 (45%), Gaps = 38/220 (17%)
Query: 8 LYSDDV-SLVVVLLDTNPFFWS------SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
L SD+ SL+ V++DT+P W+ S + L +L FLNA L N N+V VI
Sbjct: 17 LNSDETPSLLTVIIDTSPRLWAELDGDMKEDGSIIKVLRSMLVFLNAHLATNNANKVAVI 76
Query: 61 ATGYNSCDYVYD-SSSTGNQSVGNGRMPSLCATLLQN---LEEFMNKDEQLGKQ------ 110
A Y+Y ++S N++ N S + N +F N DE L ++
Sbjct: 77 AAHSQGIKYLYPINTSHANKNKTNEISTSKKDLAIINPNMYRQFRNVDESLVEEIYKIFQ 136
Query: 111 --------EPEGRIACSLLSGSLSMALCYIQRVFRSG---LLHPQPRILCLQGSP----- 154
+P+ + S L+G++S L YI R+ ++ L + ++ G+
Sbjct: 137 KEKAEYLEKPKQK---STLAGAMSAGLTYINRIVKNEENYTLKSRLVVITCGGNAYTDNK 193
Query: 155 -DGPEQYVAIMNAIFSAQRSMVPIDSCYL-GAQNSAFLQQ 192
+ QY+ IMN IFSA + PID + G+ S FLQQ
Sbjct: 194 VEEVIQYIPIMNCIFSATKMKCPIDVVKIGGSSESTFLQQ 233
>gi|350630603|gb|EHA18975.1| hypothetical protein ASPNIDRAFT_42792 [Aspergillus niger ATCC 1015]
Length = 380
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 103/236 (43%), Gaps = 58/236 (24%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ + SL S + ++L F+NA L N N+V V+++ + ++Y
Sbjct: 20 SLLTIILDTNPHAWALLNPSLPLSTAIANILVFINAHLACNYANEVAVVSSHTSQATWLY 79
Query: 72 -------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQ--------LGKQ 110
+ S G+ S+ + + P T + F +EQ + +
Sbjct: 80 PVEKAATTTTAANNLDSDGDISMRSQQPPPSTHTNVNKYRPFRIVEEQVSTHLHNLMSQT 139
Query: 111 EPEG--RIACSLLSGSLSMALCYIQR------------VFRSGLLHP------------- 143
PE ++++G+L++AL +I R + + P
Sbjct: 140 TPETLQSTTSTMMAGALTLALSHINRRTLAWNEAHGGDIDTTNPNDPSSSSSSSHNTKGT 199
Query: 144 -----QPRILCL--QGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
Q RIL L S QY+ IMNAIF+ QR +PID C + ++ FLQQ
Sbjct: 200 AESTLQSRILILSVSSSTGSAHQYIPIMNAIFACQRLHIPIDVCKVSG-DAVFLQQ 254
>gi|449295631|gb|EMC91652.1| hypothetical protein BAUCODRAFT_300256 [Baudoinia compniacensis
UAMH 10762]
Length = 386
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 100/241 (41%), Gaps = 67/241 (27%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ +++DTNP W+ +L ++ + +L F+NA L +N NQV VIA+ +++Y
Sbjct: 20 SLLTIIIDTNPHAWALLDDTLPLTKAVASLLVFINAHLAINYTNQVAVIASHSERAEWLY 79
Query: 72 DS-----SSTGNQSVGNGR-----------------------MPSLCATLLQNLEEFMNK 103
+ + N ++ NGR L TL+ NL + MN
Sbjct: 80 PTDVHPDNVQSNGALANGRDYEDLMDRGGPVQPPDDANKYRPFAQLEHTLMYNLRKMMNT 139
Query: 104 DEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRS---------------------GLLH 142
+ ++L+G+L+ AL YI + S L
Sbjct: 140 T----TTDAINSSPATMLAGALTRALAYISKQTASLPTATSSTQFNYSDPSAMAGGNELT 195
Query: 143 PQP-----------RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQ 191
P RIL + S D ++Y+ IMN IF+ QR VPID L A + FLQ
Sbjct: 196 TDPTKSANALGLSSRILIVSVSGDLADRYIEIMNCIFACQRMSVPIDVLKL-AGDPVFLQ 254
Query: 192 Q 192
Q
Sbjct: 255 Q 255
>gi|413935398|gb|AFW69949.1| hypothetical protein ZEAMMB73_462205 [Zea mays]
Length = 73
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/41 (70%), Positives = 36/41 (87%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHV 41
MASA SKLYSDD+SLVVV+LDTNPFFW++++L F+ F HV
Sbjct: 1 MASAHSKLYSDDISLVVVVLDTNPFFWAAATLPFADFFAHV 41
>gi|242764012|ref|XP_002340688.1| transcription factor TFIIH subunit Tfb4, putative [Talaromyces
stipitatus ATCC 10500]
gi|218723884|gb|EED23301.1| transcription factor TFIIH subunit Tfb4, putative [Talaromyces
stipitatus ATCC 10500]
Length = 380
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 102/237 (43%), Gaps = 59/237 (24%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LD NP W+ L FS+ L ++L F+NA L N N+V V+A+ ++Y
Sbjct: 20 SLLAIVLDVNPHAWALLEDQLPFSKALANLLVFINAHLAFNYTNEVAVVASHSQRAAWLY 79
Query: 72 DS------SSTGNQSV-GNGRMPSLCA-------TLLQN--------LEE--FMNKDEQL 107
+ +ST Q G+ M A T QN +EE N E L
Sbjct: 80 PTHSQQQKTSTNRQDADGDIEMNGQEAHNIHSSRTSTQNNMYRPFRVVEEQVLENVRELL 139
Query: 108 GKQEPEGRIACS-LLSGSLSMALCYIQRVFRSGL-------------------------- 140
+ A S +L+G+L++AL +I R +
Sbjct: 140 ASTDASDVSATSTMLAGALTLALSHINRRTMTWTETHGNSSVDTANAATGSSSAAAVSGG 199
Query: 141 ---LHPQPRIL--CLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
L Q RIL + S D QY+ IMN+IF+ QR +PID C L ++ FLQQ
Sbjct: 200 NVSLGLQSRILIVSVSSSTDSAHQYIPIMNSIFACQRLHIPIDVCKLSG-DAVFLQQ 255
>gi|195437728|ref|XP_002066792.1| GK24367 [Drosophila willistoni]
gi|194162877|gb|EDW77778.1| GK24367 [Drosophila willistoni]
Length = 303
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 95/201 (47%), Gaps = 24/201 (11%)
Query: 6 SKLYSDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
+K + L+V++LDTNP + + +Q L ++AF NA L N++ VI+
Sbjct: 14 AKESESSIDLLVIVLDTNPSQRIVRQNPQNLTQILEAMIAFGNAHLMQKAQNKLAVISCS 73
Query: 64 YNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQE--------PEGR 115
+++ +++Y GR + + E ++ E+ KQ+ P
Sbjct: 74 HHASNFLYPLP---------GRQVEV--RQIDGQYEVFSQVEKTIKQQLGNILMNAPRLS 122
Query: 116 IAC-SLLSGSLSMALCYIQRVFRSGL--LHPQPRILCLQGSPDGPEQYVAIMNAIFSAQR 172
C SLL+GS+ ALCYI R+ R+ + R+L L GS + QY+ MN F+AQ+
Sbjct: 123 APCESLLAGSIGRALCYISRLQRNTPPGIKMHSRVLVLTGSNECSSQYMTFMNVFFTAQK 182
Query: 173 SMVPIDSCYLGAQNSAFLQQC 193
+ ID+C L S Q C
Sbjct: 183 LGIVIDTCSLENPVSLLQQGC 203
>gi|393217350|gb|EJD02839.1| Tfb4-domain-containing protein [Fomitiporia mediterranea MF3/22]
Length = 432
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 98/234 (41%), Gaps = 63/234 (26%)
Query: 11 DDVSLVVVLLDTNPFFWSSSSL-------SFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
D+ S + ++LD P W SSL SF FL LAFLN LTL N +VV
Sbjct: 29 DNPSHLAIILDLFPTQWHLSSLPKNAYPHSFKSFLAQTLAFLNFHLTLKHENALVVYGAF 88
Query: 64 -------YNSCDYVYDSSSTGNQSVGNGRMP------SLCATLLQNLEEFMNKDEQLGKQ 110
Y+S D+ + + + +V N +P ++ + + L+ + DE+ +Q
Sbjct: 89 PGKSVLLYSSTDHKAEGAD-DSIAVPNTYLPFKVVDTAVTKRISEELDAMSDFDEEALRQ 147
Query: 111 EPEGRIACSLLSGSLSMALCYIQRVFRSG------------------------------- 139
L G+L+ ALC F
Sbjct: 148 ----------LVGALTKALCRTGLSFLKPCSNLDLLDERAVIDINWLVNPTATSIDSDVP 197
Query: 140 LLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQR-SMVPIDSCYLGAQNSAFLQQ 192
++ P+PRI+ L SPD Y+ +MN+IFSAQ V ID C + A ++ FLQQ
Sbjct: 198 VVSPEPRIVILSVSPDLSTSYIPLMNSIFSAQNLCKVAIDVCKIYAPDAVFLQQ 251
>gi|449546921|gb|EMD37890.1| hypothetical protein CERSUDRAFT_136815 [Ceriporiopsis subvermispora
B]
Length = 331
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 96/205 (46%), Gaps = 29/205 (14%)
Query: 11 DDVSLVVVLLDTNPFFW---SSSS----LSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
D S + V++D +P W S SS L FL+ +LAF N+ + N + V
Sbjct: 2 DKASHLSVVIDLSPTQWHLCSQSSNPHPLPLQLFLSQLLAFFNSHIACKDENSLAVFGAF 61
Query: 64 YNSCDYVYDSSSTGNQ-----SVGNGRMP--SLCATLLQNLEEFMNKDEQLGKQEPEGRI 116
+Y S++ + + N P L +T++ ++ + + E L + P G
Sbjct: 62 PGKSILLYSSTTIAAEEHSVNADANTYRPFKILDSTIMDSIRDQLEALELLEAEAPIG-- 119
Query: 117 ACSLLSGSLSMALCYIQRVF-------RSG--LLHPQPRILCLQGSPDGPEQYVAIMNAI 167
L G+++ +LCYI R+ R+G + PRIL SPD Y+ IMN+I
Sbjct: 120 ----LVGAITKSLCYINRLTIPSSSTTRAGEQAVPLDPRILIFSVSPDQSSSYIPIMNSI 175
Query: 168 FSAQRSMVPIDSCYLGAQNSAFLQQ 192
FSAQ+ V ID C + +S FLQQ
Sbjct: 176 FSAQKLKVTIDVCKIYGSDSVFLQQ 200
>gi|410082137|ref|XP_003958647.1| hypothetical protein KAFR_0H01020 [Kazachstania africana CBS 2517]
gi|372465236|emb|CCF59512.1| hypothetical protein KAFR_0H01020 [Kazachstania africana CBS 2517]
Length = 328
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 95/217 (43%), Gaps = 30/217 (13%)
Query: 2 ASAPSKLYSDDVSLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLN 55
++ S + + SL+ V++D P W+ + S L +L FLNA L N N
Sbjct: 12 STKRSTVLEETPSLLAVIIDIAPKLWAEFDEEKDTEGSIINVLQALLVFLNAHLAFNTSN 71
Query: 56 QVVVIATGYNSCDYVYDSSSTGNQSVGNG-------------RMPSLCATLLQNLEEFMN 102
QV VIA Y+Y ++ V R ++ L++ L
Sbjct: 72 QVAVIAAHSQGIKYLYPENNINKNDVLKSDKDLSIINKGMYRRFRNVDEVLVEELYSLF- 130
Query: 103 KDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRS-GLLHPQPRIL---CLQGSPDGPE 158
K+EQ E + S L G++S L Y+ R+ + L + R++ C G + E
Sbjct: 131 KEEQ---NELDKITQKSTLPGAISAGLTYVNRISKEMETLSLKSRLMVLTCGSGMANKEE 187
Query: 159 --QYVAIMNAIFSAQRSMVPIDSCYL-GAQNSAFLQQ 192
QY+ IMN IFSA + P+D + G++ S FLQQ
Sbjct: 188 IFQYIPIMNCIFSATKLKCPVDVVKIGGSKESTFLQQ 224
>gi|258567552|ref|XP_002584520.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237905966|gb|EEP80367.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 398
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 107/259 (41%), Gaps = 68/259 (26%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ +L S + ++L F+NA L N N+V V+A+ ++Y
Sbjct: 20 SLLTIVLDTNPHAWALLEETLPLSTAVANLLVFINAHLACNYANKVAVVASHSQEARWLY 79
Query: 72 DSSSTGNQSVGNGRMPSLCATLL----------QNLEEFMNKDEQLGKQEPE-------- 113
+S+T + NG + T + F +EQL + +
Sbjct: 80 PASTTSPSNSQNGSTDTDGDTNMSSSNPPPTQSNKYRPFRIVEEQLTRNLKDLLSTTSPA 139
Query: 114 --GRIACSLLSGSLSMALCYIQR-----------------------VFRSGLLHPQP--- 145
++++G+L++AL +I R + L P P
Sbjct: 140 SLSSTTSTMMAGALTLALSHINRETIVYAETHGASSAKLDADPSNPAPTASALPPPPGST 199
Query: 146 ----------------RILCL--QGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNS 187
RIL + + QY+ IMN+IF+ QR +PID C L ++
Sbjct: 200 FDPSSNTNRNLSGLQSRILIISVSSATGSAHQYIPIMNSIFACQRLHIPIDICKLSG-DA 258
Query: 188 AFLQQ-CMSDRLLTLLVEY 205
FLQQ C + R + + V++
Sbjct: 259 VFLQQACDATRGIYVPVDH 277
>gi|326929605|ref|XP_003210949.1| PREDICTED: general transcription factor IIH subunit 3-like
[Meleagris gallopavo]
Length = 290
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 91/184 (49%), Gaps = 27/184 (14%)
Query: 29 SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY--------DSSSTGNQS 80
S + S+ + + N+ L +++ N++ VIA+ ++Y D G S
Sbjct: 11 SLDFTLSKCIDAAMVLGNSHLFMSRTNKLAVIASHTQESRFLYPGKRWASADLLGDGGNS 70
Query: 81 V-------GNGRMPSLCA---TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALC 130
V +G+ L A + + +++ M K + +G+Q +LL+GSL+ ALC
Sbjct: 71 VESNCSGSKDGKYELLTAINDAIAEEIKDLMTKTDMMGQQTE------TLLAGSLAKALC 124
Query: 131 YIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSA 188
YI ++ + + + RIL ++ + D QY+ MN IF+AQ+ + ID+C L + +S
Sbjct: 125 YINKMSKEVKANQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQSILIDACVLDS-DSG 183
Query: 189 FLQQ 192
LQQ
Sbjct: 184 LLQQ 187
>gi|385301449|gb|EIF45638.1| subunit of TFIIH complex [Dekkera bruxellensis AWRI1499]
Length = 219
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 57/101 (56%), Gaps = 13/101 (12%)
Query: 94 LQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHP--QPRILCLQ 151
LQNL+ + K E K LSG+LS AL YI R F++ H + RI+C+
Sbjct: 3 LQNLKSLVGKGETHIK---------GTLSGALSQALSYINR-FQNSDEHSGMKARIVCIS 52
Query: 152 GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
S D YV+IMN+IF+AQ+ V +D C LG NS FLQQ
Sbjct: 53 VSGDNTLPYVSIMNSIFAAQKQKVSVDVCKLGP-NSTFLQQ 92
>gi|295670289|ref|XP_002795692.1| RNA polymerase II transcription factor B subunit 4
[Paracoccidioides sp. 'lutzii' Pb01]
gi|226284777|gb|EEH40343.1| RNA polymerase II transcription factor B subunit 4
[Paracoccidioides sp. 'lutzii' Pb01]
Length = 422
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 106/261 (40%), Gaps = 84/261 (32%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ V+LDTNP+ W+ S+L S + ++L F+NA L N N+V V+A+ N ++Y
Sbjct: 33 SLLTVILDTNPYAWALLESTLPLSAAIANLLVFINAHLACNYANKVAVVASHCNHAAWLY 92
Query: 72 DSSSTGNQSVG-------------NGRMPSL---------CATLLQNLEEFMNKDEQLGK 109
+ ST + S NG+ PS + L F+ +EQL +
Sbjct: 93 PTPSTPSISRSKAIQLDADGDITMNGQ-PSTEPERENQQQSQSPLNKYRPFLLVEEQLTR 151
Query: 110 Q-------EPEGRI---ACSLLSGSLSMALCYIQR-----VFRSGLLHPQPR-------- 146
P + ++L+G+L++AL +I R G +P P
Sbjct: 152 NLHCILSATPPSAVTSTTSTMLAGALTLALSHINRESIAYAEAHGAANPDPTSSTTGPAT 211
Query: 147 -----------------------------------ILCLQGSPDGPEQYVAIMNAIFSAQ 171
I+ L + + Y+ IMN+IF+ Q
Sbjct: 212 STASGLPPPPNSTTTDPASAVANHLNPTALQSRILIISLSNTTHSAQHYIPIMNSIFACQ 271
Query: 172 RSMVPIDSCYLGAQNSAFLQQ 192
R +PID L A ++AFLQQ
Sbjct: 272 RLHIPIDIIKL-AGDAAFLQQ 291
>gi|212529242|ref|XP_002144778.1| transcription factor TFIIH subunit Tfb4, putative [Talaromyces
marneffei ATCC 18224]
gi|210074176|gb|EEA28263.1| transcription factor TFIIH subunit Tfb4, putative [Talaromyces
marneffei ATCC 18224]
Length = 380
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 95/237 (40%), Gaps = 59/237 (24%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LD NP W+ L FS+ L ++L F+NA L N N+V VIA+ ++Y
Sbjct: 20 SLLAIVLDINPHAWALLEDQLPFSKALANILVFINAHLACNYTNEVAVIASHSQRAAWLY 79
Query: 72 ----------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPE-- 113
D N + S +T F +EQ+ + E
Sbjct: 80 PAHNQQQKPSTNRLDADGDIDMNGEEAHNSRASRSSTQSNMYRPFRLVEEQVMENVRELL 139
Query: 114 -------GRIACSLLSGSLSMALCYIQRVFRSGL-------------------------- 140
++++G+L++AL +I R +
Sbjct: 140 ASTNASDVTATSTMMAGALTLALSHINRRTMTWTETHGNSNIETAGASASSSATAAVSGG 199
Query: 141 ---LHPQPRIL--CLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
L Q RIL + S D QY+ IMN+IF+ QR +PID C L ++ FLQQ
Sbjct: 200 NLSLGLQSRILIVSVSSSTDSAHQYIPIMNSIFACQRLHIPIDVCKLSG-DAVFLQQ 255
>gi|449476600|ref|XP_002189370.2| PREDICTED: general transcription factor IIH subunit 3 isoform 1
[Taeniopygia guttata]
gi|449476604|ref|XP_004176463.1| PREDICTED: general transcription factor IIH subunit 3 isoform 2
[Taeniopygia guttata]
Length = 267
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 93/188 (49%), Gaps = 26/188 (13%)
Query: 46 NAILTLNQLNQVVVIATGYNSCDYVY------------------DSSSTGNQSVGNGRMP 87
N+ L +N+ N++ VIA+ ++Y +S+ +G++ +
Sbjct: 5 NSHLLMNRTNKLAVIASHTQESRFLYPGKRWAAADPFGEGGPSMESNCSGSKDGKYELLT 64
Query: 88 SLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--P 145
++ + + +++ M K + G+Q +LL+GSL+ ALCYI ++ + ++ +
Sbjct: 65 AINDAIAEEIKDLMTKTDMKGQQTE------TLLAGSLAKALCYINKMGKDLKVNQEIKS 118
Query: 146 RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQCMSDRLLTLLVEY 205
RIL ++ + D QY+ MN IF+AQ+ + ID+C L + + Q C + L V +
Sbjct: 119 RILVIKAAEDSALQYMNFMNVIFAAQKQSILIDACVLDSDSGLLQQACDITGGIYLKVPH 178
Query: 206 IISLNNWM 213
+ SL ++
Sbjct: 179 MPSLLQYL 186
>gi|448533948|ref|XP_003870733.1| TFIIH complex subunit [Candida orthopsilosis Co 90-125]
gi|380355088|emb|CCG24605.1| TFIIH complex subunit [Candida orthopsilosis]
Length = 408
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 99/230 (43%), Gaps = 51/230 (22%)
Query: 11 DDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
D+ SL+ ++LD +P W S S S +L FLN L++N NQV I + +
Sbjct: 65 DEPSLLTIILDISPRGWYSIKDSTSLQDVAKSLLVFLNGHLSINNSNQVSFIVSSPQTSK 124
Query: 69 YVY-----DSSSTGNQSVGNG---RMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSL 120
++Y +ST + + G + ++ +L+ L F+ + ++ R S
Sbjct: 125 FLYPHPSNQKTSTTDSKISPGMYRQFKNVNEVVLEELNRFIKETSEISVVSTARR--NSS 182
Query: 121 LSGSLSMALCYIQR------------------------------------VFRSGLLHPQ 144
++G++SMAL Y R + S +
Sbjct: 183 ITGAISMALTYTYRMSILDQSIQTTTASAINTSSINAKQSDASSSSTTAGIVPSTSTSIK 242
Query: 145 PRILCLQGSPDGPE--QYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
RIL + + DG + Y+ +MN IF+AQ+ V ID LG +NS++LQQ
Sbjct: 243 SRILIVSAN-DGDDSINYIPLMNCIFTAQKLKVSIDVAKLGFKNSSYLQQ 291
>gi|68489766|ref|XP_711270.1| hypothetical protein CaO19.11671 [Candida albicans SC5314]
gi|68489813|ref|XP_711246.1| hypothetical protein CaO19.4194 [Candida albicans SC5314]
gi|46432534|gb|EAK92011.1| hypothetical protein CaO19.4194 [Candida albicans SC5314]
gi|46432559|gb|EAK92035.1| hypothetical protein CaO19.11671 [Candida albicans SC5314]
Length = 363
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 97/231 (41%), Gaps = 50/231 (21%)
Query: 10 SDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
+DD SL+ ++LD + W + +S +L FLN L+LN NQV + +
Sbjct: 20 NDDPSLLTIILDLSMKGWYNIKEMISIQDITKSLLVFLNGHLSLNNSNQVAFLVSSTMGS 79
Query: 68 DYVY-DSSSTGNQSVGNG--RMPSLCA-------TLLQNLEEFMNKDEQLGKQEPEGRIA 117
++Y D + GN +V P + ++LQ L E++ + + + +
Sbjct: 80 KFLYPDLTMVGNPNVSEHSEHFPDMYRSFKMVDQSVLQQLNEYIEEIIKFETRNEKKGFN 139
Query: 118 CSLLSGSLSMALCYIQRVFR------------------------------------SGLL 141
C L+G++SMAL Y R+ S
Sbjct: 140 C--LTGAISMALTYTNRMLTLDQSITTTTAAAMTASTLESTSNNNNTSGTSGSSSTSSST 197
Query: 142 HPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
+ R+L + + D +Y+ +MN IF+AQ+ V ID LG NS++LQQ
Sbjct: 198 SMKSRVLIVSANDDDDLRYIPLMNCIFAAQKMKVSIDVAKLGHNNSSYLQQ 248
>gi|294658697|ref|XP_461035.2| DEHA2F15510p [Debaryomyces hansenii CBS767]
gi|218511849|sp|Q6BL86.2|TFB4_DEBHA RecName: Full=RNA polymerase II transcription factor B subunit 4;
AltName: Full=RNA polymerase II transcription factor B
34 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p34 subunit
gi|202953319|emb|CAG89405.2| DEHA2F15510p [Debaryomyces hansenii CBS767]
Length = 387
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 98/247 (39%), Gaps = 73/247 (29%)
Query: 15 LVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY- 71
L+ V+LD P W + ++ + +L FLNA L+LN NQV IA+ ++Y
Sbjct: 24 LLTVVLDVTPQSWYKIRNQITIQEVAKSLLVFLNAHLSLNNSNQVAFIASTPQGSKFLYP 83
Query: 72 ---------DSSSTGNQS-----------VGNG---RMPSLCATLLQNLEE-FMNKDEQL 107
S G S VG+G + + +L+ L E F + + +
Sbjct: 84 NPEKNYDEVSSKKNGEGSNLNKADSTSSLVGDGMYRQFRIVDEAVLEKLNEIFADISQNV 143
Query: 108 GKQEPEGRIACSLLSGSLSMALCYIQRVFR------------------------------ 137
K + S LSG+LS+AL Y R+
Sbjct: 144 DKSR-----SNSTLSGALSLALTYTNRMLNLDSSISTTTASAINTTTNANSNKTSSSGTT 198
Query: 138 -----------SGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQN 186
+ L + RIL + + D +Y+ IMN F+AQ+ VPID LG ++
Sbjct: 199 SNSMSTGGTNTTSLTSMRSRILIVSSNDDNDIKYIPIMNTTFAAQKMKVPIDVAKLGERD 258
Query: 187 SAFLQQC 193
S++LQQ
Sbjct: 259 SSYLQQA 265
>gi|241956274|ref|XP_002420857.1| RNA polymerase II transcription factor B subunit 4, putative; TFIIH
subunit TFB4, putative [Candida dubliniensis CD36]
gi|223644200|emb|CAX41010.1| RNA polymerase II transcription factor B subunit 4, putative
[Candida dubliniensis CD36]
Length = 363
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 97/230 (42%), Gaps = 50/230 (21%)
Query: 11 DDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
DD SL+ ++LD + W + +S +L FLN L+LN NQV + +
Sbjct: 21 DDPSLLTIILDLSMKGWYNIKEMISIQDITKSLLVFLNGHLSLNNSNQVAFLVSSSMGSK 80
Query: 69 YVY-DSSSTGNQSVGNG--RMPSLCA-------TLLQNLEEFMNKDEQLGKQEPEGRIAC 118
++Y D ++ GN +V P + ++L+ L E++ + + + + C
Sbjct: 81 FLYPDLTTIGNPNVNEHSEHFPGMYRSFKMADQSVLRQLNEYIKEIVKFETRNEKRGFNC 140
Query: 119 SLLSGSLSMALCYIQRVF------------------------------------RSGLLH 142
L+G++SMAL Y R+ S
Sbjct: 141 --LTGAISMALTYTNRMLTLDQSITTTTAAAMTTSTLESTSNNNSTSGTGGSSGTSSSTS 198
Query: 143 PQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
+ RIL + + D +Y+ +MN IF+AQ+ V ID LG NS++LQQ
Sbjct: 199 MKSRILIVSANDDDDLRYIPLMNCIFAAQKMKVSIDVAKLGHNNSSYLQQ 248
>gi|431912136|gb|ELK14274.1| General transcription factor IIH subunit 3 [Pteropus alecto]
Length = 292
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 98/222 (44%), Gaps = 39/222 (17%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L ++ N++ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMDHSNKLAVIASHI 64
Query: 65 NSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGS 124
++Y NGR+ L EF + GK E LL+ +
Sbjct: 65 QESRFLYPGK--------NGRLGDLFGDPSNPPSEFNPSGSKDGKYE--------LLTAA 108
Query: 125 LSMALCYIQRVFRSG---------LLH--------PQPRILCLQGSPDGPEQYVAIMNAI 167
+ + I+ + +G + H P P + ++ + D QY+ MN I
Sbjct: 109 NEVIVEEIKDLMTNGPNPVADFVPVCHSQGSSFSSPHPGQV-IKAAEDSALQYMNFMNVI 167
Query: 168 FSAQRSMVPIDSCYLGAQNSAFLQQCMSDRLLTLLVEYIISL 209
F+AQ+ + ID+C LG+ + Q C L L V + SL
Sbjct: 168 FAAQKQNILIDACVLGSDSGLLQQACDITGGLYLKVPQMPSL 209
>gi|50303925|ref|XP_451910.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|62901298|sp|Q6CVX9.1|TFB4_KLULA RecName: Full=RNA polymerase II transcription factor B subunit 4;
AltName: Full=RNA polymerase II transcription factor B
34 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p34 subunit
gi|49641042|emb|CAH02303.1| KLLA0B08569p [Kluyveromyces lactis]
Length = 337
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 94/213 (44%), Gaps = 40/213 (18%)
Query: 11 DDVSLVVVLLDTNPFFW--------------SSSSLSFSQFLTHVLAFLNAILTLNQLNQ 56
D SL+ V++DT+ W SS + L ++ FLNA L N NQ
Sbjct: 21 DTPSLLTVVVDTSIHSWVQLTKQQSGSGSEGSSGEKQLIEALKSIVVFLNAHLAFNSGNQ 80
Query: 57 VVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDE-------QLGK 109
V +IA Y+Y S+ + PS+ F N DE +L K
Sbjct: 81 VCLIAAHSEGMKYLYPSADSK---------PSMSMVSSDMYRGFRNVDEIVVEQWYRLFK 131
Query: 110 QEPEGRIA----CSLLSGSLSMALCYIQRVFRSGL-LHPQPRILCLQ-GSPDGPE---QY 160
+E EG+ + S LSG++S AL Y+ R+ + + R+L + G+ G + QY
Sbjct: 132 EELEGQESKVSMKSSLSGAMSSALTYVNRILKENENTSLRSRLLVITCGTSQGKDEIFQY 191
Query: 161 VAIMNAIFSAQRSMVPIDSCYLGAQ-NSAFLQQ 192
+ IMN IFSA + ID +G S FLQQ
Sbjct: 192 IPIMNCIFSATKMKCSIDVVKIGGGIESTFLQQ 224
>gi|297693367|ref|XP_002823992.1| PREDICTED: general transcription factor IIH subunit 3 [Pongo
abelii]
Length = 318
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 99/219 (45%), Gaps = 25/219 (11%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQ--------FLTH---VLAFLNAILTLNQLNQVV 58
D+++L+V+++D NP +W +L SQ TH + + + ++ +
Sbjct: 21 EDELNLLVIVVDANPIWWGKQALKESQECMCTPLQHFTHNNPPPSVFPPLFRKHWNHRFL 80
Query: 59 VIATGYNSCDYVYDSSS------TGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEP 112
D+ D + +G++ + S +++ +++ M K + G+
Sbjct: 81 YPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDIKGQHTE 140
Query: 113 EGRIACSLLSGSLSMALCYIQRVFR--SGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSA 170
+LL+GSL+ ALCYI R+ + + RIL ++ + D QY+ MN IF+A
Sbjct: 141 ------TLLAGSLAKALCYIHRMNKEIKDNQEMKSRILVIKAAEDSALQYMNFMNVIFAA 194
Query: 171 QRSMVPIDSCYLGAQNSAFLQQCMSDRLLTLLVEYIISL 209
Q+ + ID+C L + + Q C L L V + SL
Sbjct: 195 QKQNILIDACVLDSDSGLLQQACDITGGLYLKVPQMPSL 233
>gi|402224045|gb|EJU04108.1| transcription factor Tfb4 [Dacryopinax sp. DJM-731 SS1]
Length = 305
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 74/191 (38%), Gaps = 21/191 (10%)
Query: 18 VLLDTNPFFW-----SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYD 72
++LD P W S+ L FL L F+NA L L N V V +Y
Sbjct: 9 LILDLTPVPWDALSHSTPPLRLKDFLAQALVFINAHLALRNENSVSVFGALPGRSMILYP 68
Query: 73 SSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGK--QEPEGRIACSLLSGSLSMALC 130
+ + Q E FM EQ + QE E + +L+ G+L+ +LC
Sbjct: 69 PAGSTQVEADENTF----HVFGQVDEGFMRSVEQEVEDLQEVEEDVPPALV-GALTKSLC 123
Query: 131 YIQRVFRSGLLHP---------QPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCY 181
YI R+ RIL SPD Y+ MN IFSAQ+ V ID C
Sbjct: 124 YINRLSNPPPPSNPSEAPPPPPHSRILLFSVSPDASVAYIPFMNCIFSAQKLKVAIDVCK 183
Query: 182 LGAQNSAFLQQ 192
L FL Q
Sbjct: 184 LDESEVIFLHQ 194
>gi|156373212|ref|XP_001629427.1| predicted protein [Nematostella vectensis]
gi|156216427|gb|EDO37364.1| predicted protein [Nematostella vectensis]
Length = 190
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 35/187 (18%)
Query: 14 SLVVVLLDTNPFFW-------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS 66
SL+VV+ D NP W + + +S ++ L ++ N+ L L N + +A N
Sbjct: 8 SLLVVIFDANPVAWGGIAVEGNETQISLTRCLESLMVLCNSYLLLKHNNLLAFVAASTNG 67
Query: 67 CDYVYDSSS-TGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSL 125
++Y +S G QS +PS + + EF D L + + A S + L
Sbjct: 68 SKFLYPKASCEGIQS-----LPSQ-DSKYEKFSEF--NDTVLREIKKLVGAAQSTVGAKL 119
Query: 126 SMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQ 185
QPRIL ++ SPD Y+ +MN+IF+AQ+S ID+C L +
Sbjct: 120 ------------------QPRILIIKASPDDASHYMPVMNSIFAAQKSNTCIDACVL-YE 160
Query: 186 NSAFLQQ 192
+S +LQQ
Sbjct: 161 HSGYLQQ 167
>gi|281343811|gb|EFB19395.1| hypothetical protein PANDA_000941 [Ailuropoda melanoleuca]
Length = 278
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 87/183 (47%), Gaps = 27/183 (14%)
Query: 32 LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSS---------TGNQSV- 81
+ S+ + V+ N+ L +N+ N++ VIA+ ++Y + GN S
Sbjct: 2 FTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNPSSE 61
Query: 82 ------GNGRMPSLCAT---LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYI 132
+G+ A + + +++ M K E G+ +LL+GSL+ ALCYI
Sbjct: 62 FSPSGSKDGKYELFTAANEIIAEEIKDLMTKSEIKGQHTE------TLLAGSLAKALCYI 115
Query: 133 QRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFL 190
R+ + + + RIL ++ + D QY+ +MN IF+AQ+ + ID+C L + +
Sbjct: 116 HRMNKEVKDNQEMKSRILVIKAAEDSALQYMNLMNVIFAAQKQNILIDACVLDSDSGLLQ 175
Query: 191 QQC 193
Q C
Sbjct: 176 QAC 178
>gi|225684398|gb|EEH22682.1| RNA polymerase II transcription factor B subunit 4
[Paracoccidioides brasiliensis Pb03]
Length = 382
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 105/262 (40%), Gaps = 84/262 (32%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ V+LDTNP+ W+ S+L S + ++L F+NA L N N+V V+A+ N ++Y
Sbjct: 19 SLLTVILDTNPYAWALLESTLPLSAAIANLLVFINAHLACNYANKVAVVASHCNHAAWLY 78
Query: 72 DSSSTGNQS-------------VGNGRMPSL---------CATLLQNLEEFMNKDEQLGK 109
+ ST + S NG+ PS + F+ +EQL +
Sbjct: 79 PTPSTPSISQSKAIQLDADGDITMNGQ-PSTEPEPENQQQSQSPFNKYRPFLLVEEQLTR 137
Query: 110 Q-------EPEGRI---ACSLLSGSLSMALCYIQR-----VFRSGLLHPQPR-------- 146
P + ++L+G+L++AL +I R G +P P
Sbjct: 138 NLHCLLSATPPSAVTSTTSTMLAGALTLALSHINRESIAYAEAHGAANPDPTSSTTGPAT 197
Query: 147 -----------------------------------ILCLQGSPDGPEQYVAIMNAIFSAQ 171
I+ L + + Y+ IMN+IF+ Q
Sbjct: 198 STASGLPPPPNSTTADPTSAAANPLNPTALQSRILIISLSNNTHSAQHYIPIMNSIFACQ 257
Query: 172 RSMVPIDSCYLGAQNSAFLQQC 193
R +PID L A ++AFLQQ
Sbjct: 258 RLHIPIDIIKL-AGDAAFLQQA 278
>gi|303314233|ref|XP_003067125.1| Transcription factor Tfb4 family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240106793|gb|EER24980.1| Transcription factor Tfb4 family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320037386|gb|EFW19323.1| transcription factor TFIIH subunit Tfb4 [Coccidioides posadasii
str. Silveira]
Length = 395
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 107/266 (40%), Gaps = 80/266 (30%)
Query: 13 VSLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYV 70
SL+ ++LDTNP W+ +L S + ++L F+NA L N N+V V+A+ ++
Sbjct: 16 ASLLTIVLDTNPHAWALLEDTLPLSTAVANLLVFVNAHLACNYANKVAVVASHSQEARWL 75
Query: 71 YD-----------------------SSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQ- 106
Y SS+TG N P + +EE + ++ +
Sbjct: 76 YPTPTTASSNTNQDEPADTDGDVAMSSTTGESPASNKYRP------FRIVEEQLTRNLKA 129
Query: 107 -LGKQEPE--GRIACSLLSGSLSMALCYIQR------------VFRSGLLHPQPRILCL- 150
L P ++++G+L++AL +I R S +P P L
Sbjct: 130 LLATTSPASVSSATSTMMAGALTLALSHINRETIAYAETHGTSRLDSDPSNPTPTATGLP 189
Query: 151 --------------QGSPDG----------------PEQYVAIMNAIFSAQRSMVPIDSC 180
+ SP G QY+ IMN+IF+ QR +PID C
Sbjct: 190 PPPGSHPDPTSQSSRSSPTGLQSRILIISVSSATGSAHQYIPIMNSIFACQRLHIPIDIC 249
Query: 181 YLGAQNSAFLQQ-CMSDRLLTLLVEY 205
L ++ FLQQ C + R + + V++
Sbjct: 250 KLSG-DAVFLQQACDATRGIYVPVDH 274
>gi|50547937|ref|XP_501438.1| YALI0C04367p [Yarrowia lipolytica]
gi|62901295|sp|Q6CD24.1|TFB4_YARLI RecName: Full=RNA polymerase II transcription factor B subunit 4;
AltName: Full=RNA polymerase II transcription factor B
34 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p34 subunit
gi|49647305|emb|CAG81737.1| YALI0C04367p [Yarrowia lipolytica CLIB122]
Length = 340
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 26/207 (12%)
Query: 11 DDVSLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
D SL+ +++D + W S +S S+ + +L F+NA L L+ N V VI +
Sbjct: 21 DTPSLLSIIIDAHVPSWEEIKSQISISEAVASILVFINAHLALHNSNSVNVIGYNASGAR 80
Query: 69 YVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQ------------------ 110
+Y S G +S + ++ + KD + +Q
Sbjct: 81 ILYPPKS-GVESTRSKEREERSESVSDGEQAPSKKDHSMYRQFKTVDEVVQTELWNMLNH 139
Query: 111 ---EPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQ-GSPDGPEQYVAIMNA 166
E + S +SG+LS+AL +I + + RIL L G + QY+ MN
Sbjct: 140 TNYVEEEKQHNSAISGALSLALGFINKHVFVDESRMRARILLLTVGHKNETIQYIPTMNC 199
Query: 167 IFSAQRSMVPIDSCYLG-AQNSAFLQQ 192
IF+AQ+ +P+D C LG + FLQQ
Sbjct: 200 IFAAQKLKIPVDVCKLGPGSDQVFLQQ 226
>gi|259489666|tpe|CBF90125.1| TPA: transcription factor TFIIH complex subunit (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 392
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 100/250 (40%), Gaps = 72/250 (28%)
Query: 14 SLVVVLLDTNPFFWS------SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
SL+ V++DTNP W+ + L FS L ++L FLNA L N N+V V+A+ +
Sbjct: 20 SLLTVIIDTNPHAWALLEQNEKNQLPFSTALANILVFLNAHLACNYANEVAVVASHTHKA 79
Query: 68 DYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEP----EGRI------- 116
++Y S ++ S + ++ + K Q+ K P E ++
Sbjct: 80 AWLYPSPNSPTTSADSDGDVTMSNNNHMSTGGGSGKPSQVNKYRPFRIVEEQVTSNLRHL 139
Query: 117 ------------ACSLLSGSLSMALCYIQR----------------VFRSG--------- 139
A ++++G+L++AL +I R RSG
Sbjct: 140 VDSTNRDDLDSGASTMMAGALTLALSHINRRTIAWAEAHGGGDASSFSRSGDPDTSTTSM 199
Query: 140 -----------------LLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYL 182
L + I+ + + QY+ IMN IF+ QR +PID C L
Sbjct: 200 IARRSTTTTATNDGAAEGLQSRILIISVSSATGSAHQYIPIMNGIFACQRLHIPIDVCKL 259
Query: 183 GAQNSAFLQQ 192
++ FLQQ
Sbjct: 260 SG-DAVFLQQ 268
>gi|425772016|gb|EKV10443.1| Transcription factor TFIIH subunit Tfb4, putative [Penicillium
digitatum Pd1]
gi|425777277|gb|EKV15458.1| Transcription factor TFIIH subunit Tfb4, putative [Penicillium
digitatum PHI26]
Length = 387
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 102/249 (40%), Gaps = 75/249 (30%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ +++DTNP W+ SL S+ + ++L F+NA L N N+V V+A+ ++Y
Sbjct: 20 SLLTIVIDTNPHAWAILEHSLPLSKAIANILVFINAHLACNYANEVAVVASHCQKAAWLY 79
Query: 72 DSSSTGNQSVG--------NGRMPS-------------LCATLLQNLEEFMNKDEQLGKQ 110
S + NG + + + +NL+E M D G
Sbjct: 80 PSHNAPRNRTADHDSDVAMNGASDTQPPETNKYRPFRIVEEQVTRNLKELM--DSTTG-D 136
Query: 111 EPEGRIACSLLSGSLSMALCYIQR------------------------------------ 134
+ G ++ ++L+G+L++AL + R
Sbjct: 137 DLRGNMS-TMLAGALTLALSHTNRRALAWAEEHGGTNNEDAAADGNGNGNGNGNGNGHGG 195
Query: 135 -----VFRSGLLHPQPRI------LCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLG 183
V R + R+ + + GS D QY+ IMN+IF+ QR +PID C L
Sbjct: 196 GTSASVNRYSASNEDERLQSRILVISVSGSTDAAHQYIPIMNSIFACQRLNIPIDVCKLS 255
Query: 184 AQNSAFLQQ 192
++ FLQQ
Sbjct: 256 G-DAVFLQQ 263
>gi|325094096|gb|EGC47406.1| RNA polymerase II transcription factor B subunit 4 [Ajellomyces
capsulatus H88]
Length = 412
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 105/257 (40%), Gaps = 79/257 (30%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ SL S + ++L F+NA L N N+V V+A+ + ++Y
Sbjct: 20 SLLTIILDTNPHAWARLEPSLPLSAAIANLLVFINAHLACNYANKVAVVASHCHHAAWLY 79
Query: 72 DSSSTGNQSVGNGRMPSLCATLLQNL----------------EEFMNK-------DEQLG 108
+ ++ S PS A ++ EE +NK +EQL
Sbjct: 80 PTPASPKSSDSQTDAPSKDAPPDGDINMNGQQSSGQHQQAEQEEPLNKYRPFRLVEEQLT 139
Query: 109 KQ-------EPEGRIA---CSLLSGSLSMALCYIQR-----------------------V 135
+ IA +L++G+L++AL +I R
Sbjct: 140 RNLHTLLSTTTAADIASTTSTLIAGALTLALSHINRETIAYAETHGTARPDGSTSGPANS 199
Query: 136 FRSGLLHP------------------QPRIL--CLQGSPDGPEQYVAIMNAIFSAQRSMV 175
SGL P Q RIL L + Y+ IMN+IF+ QR +
Sbjct: 200 TASGLPPPPGTTASATTSHLPNPSALQSRILIISLSSTTHSAHHYIPIMNSIFACQRLHI 259
Query: 176 PIDSCYLGAQNSAFLQQ 192
PID L A ++AFLQQ
Sbjct: 260 PIDILKL-AGDAAFLQQ 275
>gi|240274744|gb|EER38259.1| RNA polymerase II transcription factor B subunit 4 [Ajellomyces
capsulatus H143]
Length = 412
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 105/257 (40%), Gaps = 79/257 (30%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ SL S + ++L F+NA L N N+V V+A+ + ++Y
Sbjct: 20 SLLTIILDTNPHAWARLEPSLPLSAAIANLLVFINAHLACNYANKVAVVASHCHHAAWLY 79
Query: 72 DSSSTGNQSVGNGRMPSLCATLLQNL----------------EEFMNK-------DEQLG 108
+ ++ S PS A ++ EE +NK +EQL
Sbjct: 80 PTPASPKSSDSQTDAPSKDAPPDGDINMNGQQSSGQHQQAEQEEPLNKYRPFRLVEEQLT 139
Query: 109 KQ-------EPEGRIA---CSLLSGSLSMALCYIQR-----------------------V 135
+ IA +L++G+L++AL +I R
Sbjct: 140 RNLHTLLSTTTAADIASTTSTLIAGALTLALSHINRETIAYAETHGTARPDGSTSGPANS 199
Query: 136 FRSGLLHP------------------QPRIL--CLQGSPDGPEQYVAIMNAIFSAQRSMV 175
SGL P Q RIL L + Y+ IMN+IF+ QR +
Sbjct: 200 TASGLPPPPGTTASATTSHLPNPSALQSRILIISLSSTTHSAHHYIPIMNSIFACQRLHI 259
Query: 176 PIDSCYLGAQNSAFLQQ 192
PID L A ++AFLQQ
Sbjct: 260 PIDILKL-AGDAAFLQQ 275
>gi|392576127|gb|EIW69258.1| hypothetical protein TREMEDRAFT_62112 [Tremella mesenterica DSM
1558]
Length = 297
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 94/227 (41%), Gaps = 50/227 (22%)
Query: 14 SLVVVLLDTNPFFWS-----------------------SSSLSFSQFLTHVLAFLNAILT 50
SL+++++D +P WS SSL+ +F+T +L FLNA L
Sbjct: 3 SLLILIVDLHPLSWSLLSIPPSPQPSDPTLSPIIAKSLPSSLTLEEFITQLLVFLNAHLA 62
Query: 51 LNQLNQVVVIATGYNSCDYVYDSSST----GNQSVGNGRMPS--LCATLLQNLEEFMNKD 104
N+VVV ++ + ST N GN P L + L Q L M+++
Sbjct: 63 SQWGNRVVVYGVSAGKSRLLFPAPSTTRDDTNTPSGNVYEPFRLLDSGLEQGLRGMMSEE 122
Query: 105 EQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRS--GLLHPQPRILCLQGSPDGPEQ--- 159
G +E +G L +++ ALCY+ R+ S L R+L + +P
Sbjct: 123 ---GAREGKGLNEPPALVAAMTKALCYLNRLSPSTATLQTTDTRMLIINATPGSSFSESD 179
Query: 160 --------YVAIMNAIFSAQRSMVPID-----SCYLGAQNSAFLQQC 193
YV +MN +F+AQ+ +PID Y FLQQ
Sbjct: 180 SSGGLRGGYVGLMNCVFAAQKGKIPIDVLTLPPSYTQTSPPIFLQQA 226
>gi|154286010|ref|XP_001543800.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150407441|gb|EDN02982.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 413
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 103/258 (39%), Gaps = 80/258 (31%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ SL S + ++L F+NA L N N+V V+A+ + ++Y
Sbjct: 20 SLLTIILDTNPHAWARLEPSLPLSAAIANLLVFINAHLACNYANKVAVVASHCHHAAWLY 79
Query: 72 DSSSTGNQSVGNGRMPSLCAT----LLQNLEEFMNKDEQLGKQEPEGR------------ 115
+ ++ S PS A + N ++ + +Q ++EP +
Sbjct: 80 PTPASPKSSDSQTDAPSKDAPPDGDISMNDQQSAGQHQQAEQEEPLNKYRPFRLVEEQLT 139
Query: 116 -----------------IACSLLSGSLSMALCYIQR------------------------ 134
+L++G+L++AL +I R
Sbjct: 140 RNLHTLLSTTTAADIASTTSTLIAGALTLALSHINRETIAYAETHGTARPDGSSTSGPAN 199
Query: 135 VFRSGLLHP------------------QPRIL--CLQGSPDGPEQYVAIMNAIFSAQRSM 174
SGL P Q RIL L + Y+ IMN+IF+ QR
Sbjct: 200 STASGLPPPPGTTASATTSHLPNPSALQSRILIISLSSTTHSAHHYIPIMNSIFACQRLH 259
Query: 175 VPIDSCYLGAQNSAFLQQ 192
+PID L A ++AFLQQ
Sbjct: 260 IPIDILKL-AGDAAFLQQ 276
>gi|354543147|emb|CCE39865.1| hypothetical protein CPAR2_602840 [Candida parapsilosis]
Length = 381
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 103/246 (41%), Gaps = 69/246 (28%)
Query: 10 SDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
+D+ SL+ ++LD +P W + +S+S +L FLN L++N NQV IA+ ++
Sbjct: 19 NDEPSLLTIILDISPKGWYNIRNSISLQDVAKSLLVFLNGHLSINNSNQVAFIASSPHTS 78
Query: 68 DYVYDSSSTGNQSVGNGR----------MPSLCATLLQNLEEFMNKDEQLGKQEPEGRIA 117
++Y + N G + ++ +LQ L++F+ ++ +Q
Sbjct: 79 KFLYPHPTNANADSGITKSKISPGMYRQFKNVDEVVLQELDQFV---QETSQQLHNATAR 135
Query: 118 CSLLSGSLSMALCYIQRVFRSGLLHPQ--------------------------------- 144
S ++G++SMAL Y +R +L
Sbjct: 136 HSSITGAISMALTY---TYRMSILDQSIQTTTAAAINTSTMSSAKQSEVAAASSSTTAST 192
Query: 145 ---------------PRILCLQGSPDGPE--QYVAIMNAIFSAQRSMVPIDSCYLGAQNS 187
RIL + + DG + Y+ +MN IF+AQ+ V ID LG +NS
Sbjct: 193 TSATAAVSSSSTSLKSRILIVSAN-DGDDSINYIPLMNCIFTAQKLKVSIDVAKLGFKNS 251
Query: 188 AFLQQC 193
++LQQ
Sbjct: 252 SYLQQA 257
>gi|226294041|gb|EEH49461.1| RNA polymerase II transcription factor B subunit 4
[Paracoccidioides brasiliensis Pb18]
Length = 408
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 105/261 (40%), Gaps = 84/261 (32%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ V+LDTNP+ W+ S+L S + ++L F+NA L N N+V V+A+ N ++Y
Sbjct: 19 SLLTVILDTNPYAWALLESTLPLSAAIANLLVFINAHLACNYANKVAVVASHCNHAAWLY 78
Query: 72 DSSSTGNQS-------------VGNGRMPSL---------CATLLQNLEEFMNKDEQLGK 109
+ ST + S NG+ PS + F+ +EQL +
Sbjct: 79 PTPSTPSISQSKAIQLDADGDITMNGQ-PSTEPEPENQQQSQSPFNKYRPFLLVEEQLTR 137
Query: 110 Q-------EPEGRI---ACSLLSGSLSMALCYIQR-----VFRSGLLHPQPR-------- 146
P + ++L+G+L++AL +I R G +P P
Sbjct: 138 NLHCLLSATPPSAVTSTTSTMLAGALTLALSHINRESIAYAEAHGAANPDPTSSTTGPAT 197
Query: 147 -----------------------------------ILCLQGSPDGPEQYVAIMNAIFSAQ 171
I+ L + + Y+ IMN+IF+ Q
Sbjct: 198 STASGLPPPPNSTTADPTSAAANPLNPTALQSRILIISLSNNTHSAQHYIPIMNSIFACQ 257
Query: 172 RSMVPIDSCYLGAQNSAFLQQ 192
R +PID L A ++AFLQQ
Sbjct: 258 RLHIPIDIIKL-AGDAAFLQQ 277
>gi|225558318|gb|EEH06602.1| RNA polymerase II transcription factor B subunit 4 [Ajellomyces
capsulatus G186AR]
Length = 412
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 105/257 (40%), Gaps = 79/257 (30%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ SL S + ++L F+NA L N N+V V+A+ + ++Y
Sbjct: 20 SLLTIILDTNPHAWARLEPSLPLSAAIANLLVFINAHLACNYANKVAVVASHCHHAAWLY 79
Query: 72 DSSSTGNQSVGNGRMPSLCATLLQNL----------------EEFMNK-------DEQLG 108
+ ++ S PS A ++ EE +NK +EQL
Sbjct: 80 PTPASPKSSDSQTDPPSKDAPPDGDINMNGQQSAGQYQQAEQEESLNKYRPFRLVEEQLT 139
Query: 109 KQ-------EPEGRIA---CSLLSGSLSMALCYIQR-----------------------V 135
+ IA +L++G+L++AL +I R
Sbjct: 140 RNLHTLLSTTTAADIASTTSTLIAGALTLALSHINRETIAYAETHGTARPDGSTSGPANS 199
Query: 136 FRSGLLHP------------------QPRIL--CLQGSPDGPEQYVAIMNAIFSAQRSMV 175
SGL P Q RIL L + Y+ IMN+IF+ QR +
Sbjct: 200 TASGLPPPPGTTASATTSHLPNPSALQSRILIISLSSTTHSAHHYIPIMNSIFACQRLHI 259
Query: 176 PIDSCYLGAQNSAFLQQ 192
PID L A ++AFLQQ
Sbjct: 260 PIDILKL-AGDAAFLQQ 275
>gi|391332492|ref|XP_003740668.1| PREDICTED: general transcription factor IIH subunit 3-like
[Metaseiulus occidentalis]
Length = 297
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 90/196 (45%), Gaps = 21/196 (10%)
Query: 10 SDDVS-LVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
D+VS L+ V+LDT+ + Q L V+ F NA L + N + V+A ++
Sbjct: 10 EDEVSELLAVVLDTSFNSALIKEKNVGQLLDAVVIFSNAHLMNSSKNTLAVVACHPHTAK 69
Query: 69 YVYDSSSTGNQSVGNGRMPSLCATLLQN--------LEEFMNKDEQLGKQEPEGRIACSL 120
+Y S+ N R P +L + ++E + + + EP L
Sbjct: 70 MIY---PVKKDSIQNIRPPDAQMEILAHATQVIRDGIKEVVTSWQGVYSIEP-------L 119
Query: 121 LSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180
L+G +++ALCYI + + + RIL L S + QY+ MN F+AQR + +DSC
Sbjct: 120 LTGGMALALCYIAKRMANTVGKLNGRILVLSSSGESAHQYLNFMNVFFAAQRKAIVVDSC 179
Query: 181 YLGAQNSAFLQQCMSD 196
+ QN L Q +D
Sbjct: 180 VI--QNDCGLLQQGAD 193
>gi|121713686|ref|XP_001274454.1| transcription factor TFIIH subunit Tfb4, putative [Aspergillus
clavatus NRRL 1]
gi|119402607|gb|EAW13028.1| transcription factor TFIIH subunit Tfb4, putative [Aspergillus
clavatus NRRL 1]
Length = 386
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 64/242 (26%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS----- 66
SL+ ++LDTNP W+ SL S + ++L F+NA L N N+V V+A+ +
Sbjct: 20 SLLTIVLDTNPHAWALLEPSLPLSTAIANILVFINAHLACNYANEVAVVASHTHKATWLY 79
Query: 67 -CDYVYDSSST----------GNQSVGNGRMPSLCATLLQN-------LEEFMNKDEQ-- 106
C+ + ++T G+ ++ + S A N +EE ++++ +
Sbjct: 80 PCETQHPRTTTASAPASADNDGDVAMDDSSGSSGAADAHVNKYRPFRIVEEQVSRNLRRL 139
Query: 107 LGKQEPEGRIA--CSLLSGSLSMALCYIQR------------------------------ 134
LG A ++++G+L++AL +I R
Sbjct: 140 LGATTATDVQASTTTMMAGALTLALSHINRRSLAWAEAHGGAAATGSAGAAEGAPGGGGR 199
Query: 135 ----VFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFL 190
+ L + I+ + S D QY+ IMNAIF+ QR VPID C L ++ FL
Sbjct: 200 ADGEGGGAEGLQSRILIISVSSSTDSAHQYIPIMNAIFACQRLHVPIDVCKLSG-DAVFL 258
Query: 191 QQ 192
QQ
Sbjct: 259 QQ 260
>gi|224156833|ref|XP_002337765.1| predicted protein [Populus trichocarpa]
gi|222869675|gb|EEF06806.1| predicted protein [Populus trichocarpa]
Length = 77
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/30 (90%), Positives = 28/30 (93%)
Query: 164 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
MNAIFSAQRSMVPIDSCY+GA NSAFLQQ
Sbjct: 1 MNAIFSAQRSMVPIDSCYVGAHNSAFLQQA 30
>gi|187608008|ref|NP_001120625.1| general transcription factor IIH, polypeptide 3, 34kDa [Xenopus
(Silurana) tropicalis]
gi|171846721|gb|AAI61775.1| gtf2h3 protein [Xenopus (Silurana) tropicalis]
Length = 200
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 58/99 (58%), Gaps = 8/99 (8%)
Query: 96 NLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLL--HPQPRILCLQGS 153
++++ M K Q+ Q+ E ++L+GSL+ ALCYI ++ + + RIL ++ +
Sbjct: 5 DIKDLMTKTGQINGQQTE-----TVLAGSLAKALCYINKIAKDTKAGQEVKSRILVIKAA 59
Query: 154 PDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
D QY+ MN IF+AQ+ + ID+C L + +S LQQ
Sbjct: 60 EDSALQYMNFMNVIFAAQKQSILIDACVLDS-DSGLLQQ 97
>gi|119174356|ref|XP_001239539.1| hypothetical protein CIMG_09160 [Coccidioides immitis RS]
gi|392869735|gb|EAS28255.2| transcription factor tfb4 [Coccidioides immitis RS]
Length = 396
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 108/261 (41%), Gaps = 69/261 (26%)
Query: 13 VSLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYV 70
SL+ ++LDTNP W+ +L S + ++L F+NA L N N+V V+A+ ++
Sbjct: 16 ASLLTIVLDTNPHAWALLEDTLPLSTAVANLLVFVNAHLACNYANKVAVVASHSQEARWL 75
Query: 71 YDSSSTG----NQ-------------SVGNGRMPSLCA-TLLQNLEEFMNKDEQ--LGKQ 110
Y + +T NQ S G P+ + +EE + ++ + L
Sbjct: 76 YPTPTTAPSNTNQDEPADTDGDVAMSSTTGGESPASNKYRPFRIVEEQLTRNLKALLATT 135
Query: 111 EPE--GRIACSLLSGSLSMALCYIQR------------VFRSGLLHPQPRILCL------ 150
P ++++G+L++AL +I R S +P P L
Sbjct: 136 SPASVSSATSTMMAGALTLALSHINRETIAYAETHGTSRLDSDPSNPTPTATGLPPPPGS 195
Query: 151 ---------QGSPDG----------------PEQYVAIMNAIFSAQRSMVPIDSCYLGAQ 185
SP G QY+ IMN+IF+ QR +PID C L
Sbjct: 196 HPDPTSQSSHSSPTGLQSRILIISVSSATGSAHQYIPIMNSIFACQRLHIPIDICKLSG- 254
Query: 186 NSAFLQQ-CMSDRLLTLLVEY 205
++ FLQQ C + R + + V++
Sbjct: 255 DAVFLQQACDATRGIYVPVDH 275
>gi|443727474|gb|ELU14215.1| hypothetical protein CAPTEDRAFT_169977 [Capitella teleta]
Length = 299
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 102/194 (52%), Gaps = 17/194 (8%)
Query: 14 SLVVVLLDTNPFFWSSSSLS------FSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
S +++++DT+P +W L S+ L ++ F +A L L+ NQ+VV+A N
Sbjct: 8 SCLILVIDTSPVWWGKKLLKQEYGRILSESLDALMVFCSAHLMLHHQNQLVVLAAHTNCS 67
Query: 68 DYVYDSSSTGNQSV-GNGRMPSLCATLLQNLEEFMN--KDE--QLGKQEPEGRIACS-LL 121
++ S + + ++ G+ + E + KD+ L + G + LL
Sbjct: 68 QVIFPSPNAHDAAMNGDAAFRGQSDGKYEVFAEVQSIIKDQLTDLILHDGGGEVHSDCLL 127
Query: 122 SGSLSMALCYIQRVFRSGLLHP---QPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPID 178
+G+L+ ALCY+ ++ + GL + R+L +QGS D P QY+ +MN IF+AQ+ V ID
Sbjct: 128 AGALARALCYVNKINK-GLPDGDAMRSRVLVVQGSEDNPLQYMDLMNIIFTAQKQNVIID 186
Query: 179 SCYLGAQNSAFLQQ 192
+C + ++S LQQ
Sbjct: 187 ACIMD-EDSPILQQ 199
>gi|332840758|ref|XP_003314057.1| PREDICTED: general transcription factor IIH subunit 3 [Pan
troglodytes]
gi|397481836|ref|XP_003812143.1| PREDICTED: general transcription factor IIH subunit 3 isoform 2
[Pan paniscus]
Length = 267
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 82/162 (50%), Gaps = 14/162 (8%)
Query: 46 NAILTLNQLNQVVVIATGYNSCDYVY--DSSSTGNQSVGNGRMPSLCAT--------LLQ 95
N+ L +N+ N++ VIA+ ++Y + G+ G +P + LL
Sbjct: 5 NSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNLPEFNPSGSKDGKYELLT 64
Query: 96 NLEEFMNKD--EQLGKQEPEGRIACSLLSGSLSMALCYIQRVFR--SGLLHPQPRILCLQ 151
+ E + ++ + + K + +G+ +LL+GSL+ ALCYI R+ + + RIL ++
Sbjct: 65 SANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIHRMNKEIKDNQEMKSRILVIK 124
Query: 152 GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
+ D QY+ MN IF+AQ+ + ID+C L + + Q C
Sbjct: 125 AAEDSALQYMNFMNVIFAAQKQNILIDACVLDSDSGLLQQAC 166
>gi|260939906|ref|XP_002614253.1| hypothetical protein CLUG_05739 [Clavispora lusitaniae ATCC 42720]
gi|238852147|gb|EEQ41611.1| hypothetical protein CLUG_05739 [Clavispora lusitaniae ATCC 42720]
Length = 332
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 96/206 (46%), Gaps = 25/206 (12%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
+D+ SL+ V+L+ P ++ S + ++ FLNA L+LN NQV + + + +
Sbjct: 18 ADNPSLLTVILELTPKSIAALDASLQDIVKALVVFLNAHLSLNNSNQVAFLVSSHVGARF 77
Query: 70 VYDSSS---TGNQSVGNGRMPSLCATLLQNLEEFMNKD-EQLGKQEPEGRIACSLLSGSL 125
++ S T + V G M + + + +NK+ E+L A S L+G+L
Sbjct: 78 LHPGVSDVETETRFVNPG-MYRQFRLVDEAVFGALNKELERLASAAKND--ARSTLAGAL 134
Query: 126 SMALCYIQR---VFRSG---------------LLHPQPRILCLQGSPDGPEQYVAIMNAI 167
SMA+ Y R V +SG R+L + + Y+ IMNAI
Sbjct: 135 SMAMTYTNRMLHVDQSGSAVQVAAAGTAGAQTTAAMGARVLVVSANESDDNNYMGIMNAI 194
Query: 168 FSAQRSMVPIDSCYLGAQNSAFLQQC 193
F+AQ+ V ID LG +++ +L+Q
Sbjct: 195 FAAQKMKVAIDVAKLGRRSAPYLEQA 220
>gi|398392135|ref|XP_003849527.1| hypothetical protein MYCGRDRAFT_75897 [Zymoseptoria tritici IPO323]
gi|339469404|gb|EGP84503.1| hypothetical protein MYCGRDRAFT_75897 [Zymoseptoria tritici IPO323]
Length = 386
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 102/241 (42%), Gaps = 64/241 (26%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ SLS S+ + ++L F+NA + +N N+V V+A+ +++Y
Sbjct: 20 SLLTIILDTNPHAWALLEDSLSLSKVVVNLLVFVNAHIAINHANRVAVLASHSERAEWLY 79
Query: 72 DSSSTGNQSVGNG---RMPSLCATLLQNLEEFMNKDEQLGKQEPEGRI------------ 116
++ + + NG M AT+ D K P +I
Sbjct: 80 PTAPSSHSHRTNGDDVEMADSTATMNGGANHPPPDDPN--KYRPFAQIEHALANNLRKLI 137
Query: 117 -----------ACSLLSGSLSMALCYIQRVFRS--------------------------- 138
++++G+L+MAL YI + +
Sbjct: 138 ERTSTSSLSATPATMMAGALTMALSYISKQSAALPTTTSSAQFNYSDPNAGPAGGNDLAA 197
Query: 139 ------GLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
LL RIL L S D +QY+ IMN+IF+ QR +PID L A ++ FLQQ
Sbjct: 198 DNKGPNNLLGLTSRILILSVSGDLADQYIPIMNSIFACQRLSIPIDILKL-AGDTVFLQQ 256
Query: 193 C 193
Sbjct: 257 A 257
>gi|412993660|emb|CCO14171.1| predicted protein [Bathycoccus prasinos]
Length = 370
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 121 LSGSLSMALCYIQRVFRSGLLHP--QPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPID 178
++G++S+AL Y R+ R L + R+L +Q S D EQYV +MNA+F+AQ S + ID
Sbjct: 203 IAGAISLALTYANRIERDPSLRGRVKSRVLVVQASEDDAEQYVPMMNAMFAAQSSNILID 262
Query: 179 SCYLGAQNSAFLQQ 192
L + S+FLQQ
Sbjct: 263 CLCLNEKESSFLQQ 276
>gi|119618833|gb|EAW98427.1| general transcription factor IIH, polypeptide 3, 34kDa, isoform
CRA_b [Homo sapiens]
Length = 274
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 82/167 (49%), Gaps = 27/167 (16%)
Query: 46 NAILTLNQLNQVVVIATGYNSCDYVYDSSS------------------TGNQSVGNGRMP 87
N+ L +N+ N++ VIA+ ++Y + +G++ +
Sbjct: 5 NSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLT 64
Query: 88 SLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--P 145
S +++ +++ M K + G+ +LL+GSL+ ALCYI R+ + + +
Sbjct: 65 SANEVIVEEIKDLMTKSDIKGQHTE------TLLAGSLAKALCYIHRMNKEVKDNQEMKS 118
Query: 146 RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
RIL ++ + D QY+ MN IF+AQ+ + ID+C L + +S LQQ
Sbjct: 119 RILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQ 164
>gi|67515713|ref|XP_657742.1| hypothetical protein AN0138.2 [Aspergillus nidulans FGSC A4]
gi|40746160|gb|EAA65316.1| hypothetical protein AN0138.2 [Aspergillus nidulans FGSC A4]
Length = 384
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 97/246 (39%), Gaps = 72/246 (29%)
Query: 18 VLLDTNPFFWS------SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
V++DTNP W+ + L FS L ++L FLNA L N N+V V+A+ + ++Y
Sbjct: 16 VIIDTNPHAWALLEQNEKNQLPFSTALANILVFLNAHLACNYANEVAVVASHTHKAAWLY 75
Query: 72 DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEP----EGRI----------- 116
S ++ S + ++ + K Q+ K P E ++
Sbjct: 76 PSPNSPTTSADSDGDVTMSNNNHMSTGGGSGKPSQVNKYRPFRIVEEQVTSNLRHLVDST 135
Query: 117 --------ACSLLSGSLSMALCYIQR----------------VFRSG------------- 139
A ++++G+L++AL +I R RSG
Sbjct: 136 NRDDLDSGASTMMAGALTLALSHINRRTIAWAEAHGGGDASSFSRSGDPDTSTTSMIARR 195
Query: 140 -------------LLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQN 186
L + I+ + + QY+ IMN IF+ QR +PID C L +
Sbjct: 196 STTTTATNDGAAEGLQSRILIISVSSATGSAHQYIPIMNGIFACQRLHIPIDVCKLSG-D 254
Query: 187 SAFLQQ 192
+ FLQQ
Sbjct: 255 AVFLQQ 260
>gi|225717796|gb|ACO14744.1| General transcription factor IIH subunit 3 [Caligus clemensi]
Length = 302
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 89/189 (47%), Gaps = 17/189 (8%)
Query: 12 DVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
+ L+++++D NP + L +L F NA L L+ N + I + + +
Sbjct: 14 EAQLLILVMDMNPNQRLLLEEPTRLTSVLDSLLCFSNAHLLLHPSNALAAIGSLSSGSYF 73
Query: 70 VY------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSG 123
+Y D+S Q G + +L T ++N K QL + E G S LSG
Sbjct: 74 LYPSSCIDDTSPELRQLDGQYELFTLVETSVRN------KFSQLLEAETSGS-EDSPLSG 126
Query: 124 SLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLG 183
SL+MAL YI R R + RIL L S D QY+ MN F+AQ+ V +D+C L
Sbjct: 127 SLAMALAYINRK-RKESPELRARILILTASGDTASQYMNYMNVFFTAQKLNVLLDACMLQ 185
Query: 184 AQNSAFLQQ 192
+ +S LQQ
Sbjct: 186 S-DSPLLQQ 193
>gi|226468218|emb|CAX69786.1| putative general transcription factor IIH [Schistosoma japonicum]
Length = 317
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 87/194 (44%), Gaps = 32/194 (16%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL++++LD P W +S + L F N+ L L+ N+V VI + ++Y
Sbjct: 7 SLLLLILDMTPASWGFCTSDFGLPNCIEAALGFANSHLMLSSFNEVAVIGVTPSQIKFIY 66
Query: 72 DS-SSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALC 130
S S T + +G+ +L + + N ++ D +I +L+G++ LC
Sbjct: 67 PSHSETLVGASNDGQNDAL--SCMNNTVRQLSLDLVTSCSSTSTQI---VLAGAIIKGLC 121
Query: 131 YIQRVFRSGLLHPQ----------------------PRILCLQGSPDGPEQYVAIMNAIF 168
Y R R L P RIL ++ S D QY+++MN++F
Sbjct: 122 YYLRRCRE--LQPSTRHLDDPSETTMEFSEGNDKISARILIIKASDDSTSQYLSLMNSVF 179
Query: 169 SAQRSMVPIDSCYL 182
+AQ+ VPID+C L
Sbjct: 180 TAQKLHVPIDTCVL 193
>gi|226467818|emb|CAX69785.1| putative general transcription factor IIH [Schistosoma japonicum]
Length = 317
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 87/194 (44%), Gaps = 32/194 (16%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL++++LD P W +S + L F N+ L L+ N+V VI + ++Y
Sbjct: 7 SLLLLILDMTPASWGFCTSDFGLPNCIEAALGFANSHLMLSSFNEVAVIGVTPSQIKFIY 66
Query: 72 DS-SSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALC 130
S S T + +G+ +L + + N ++ D +I +L+G++ LC
Sbjct: 67 PSHSETLVGASNDGQNDAL--SCMNNTVRQLSLDLVTSCSSTSTQI---VLAGAIIKGLC 121
Query: 131 YIQRVFRSGLLHPQ----------------------PRILCLQGSPDGPEQYVAIMNAIF 168
Y R R L P RIL ++ S D QY+++MN++F
Sbjct: 122 YYLRRCRE--LQPSTRHLDDPSETTMEFSEGNDKISARILIIKASDDSTSQYLSLMNSVF 179
Query: 169 SAQRSMVPIDSCYL 182
+AQ+ VPID+C L
Sbjct: 180 TAQKLHVPIDTCVL 193
>gi|428673524|ref|NP_001258796.1| general transcription factor IIH subunit 3 isoform c [Homo sapiens]
gi|194389784|dbj|BAG60408.1| unnamed protein product [Homo sapiens]
Length = 267
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 80/168 (47%), Gaps = 26/168 (15%)
Query: 46 NAILTLNQLNQVVVIATGYNSCDYVYDSSS------------------TGNQSVGNGRMP 87
N+ L +N+ N++ VIA+ ++Y + +G++ +
Sbjct: 5 NSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLT 64
Query: 88 SLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--P 145
S +++ +++ M K + G+ +LL+GSL+ ALCYI R+ + + +
Sbjct: 65 SANEVIVEEIKDLMTKSDIKGQHTE------TLLAGSLAKALCYIHRMNKEVKDNQEMKS 118
Query: 146 RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
RIL ++ + D QY+ MN IF+AQ+ + ID+C L + + Q C
Sbjct: 119 RILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDSDSGLLQQAC 166
>gi|402888057|ref|XP_003907393.1| PREDICTED: general transcription factor IIH subunit 3 isoform 2
[Papio anubis]
gi|426374590|ref|XP_004054153.1| PREDICTED: general transcription factor IIH subunit 3 isoform 2
[Gorilla gorilla gorilla]
Length = 267
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 26/168 (15%)
Query: 46 NAILTLNQLNQVVVIATGYNSCDYVYDSSS------------------TGNQSVGNGRMP 87
N+ L +N+ N++ VIA+ ++Y + +G++ +
Sbjct: 5 NSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLT 64
Query: 88 SLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFR--SGLLHPQP 145
S +++ +++ M K + G+ +LL+GSL+ ALCYI R+ + +
Sbjct: 65 SANEVIVEEIKDLMTKSDIKGQHTE------TLLAGSLAKALCYIHRMNKEIKDNQEMKS 118
Query: 146 RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
RIL ++ + D QY+ MN IF+AQ+ + ID+C L + + Q C
Sbjct: 119 RILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDSDSGLLQQAC 166
>gi|344229675|gb|EGV61560.1| transcription factor Tfb4 [Candida tenuis ATCC 10573]
Length = 381
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 99/249 (39%), Gaps = 61/249 (24%)
Query: 6 SKLYSDDVSLVVVLLDTNPFFW--SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
S + +DD SL+ ++L+ +P W S + +L FLN L+LN NQV + +
Sbjct: 15 SDVSNDDPSLLTIVLEVSPEGWFNIKDQTSIMDVVKSLLVFLNGHLSLNNSNQVAFVLSS 74
Query: 64 YNSCDYVYDSSS----------TGNQSVGNGRMPSLCATLLQNL-EEFMNKDE------- 105
++Y +S T ++V N + + + + +F DE
Sbjct: 75 PAGSKFLYPDTSKTYEEIPLNVTSEETVENSNKSEELSFVTKGMYRQFRVVDETVLSGLS 134
Query: 106 ----QLGKQEPEGRIACSLLSGSLSMALCYIQRVFR------------------------ 137
+ + + S LSG+LS+AL Y R+ +
Sbjct: 135 QTMSDITHAQDDKVTGSSRLSGALSLALSYTNRMMKLDQSISTTTASAISSAANISNKES 194
Query: 138 -------------SGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGA 184
G + RIL + + + +Y+++M AIF AQ+ V ID LG
Sbjct: 195 STAGASSGTNANSYGTSRMKSRILVVTPNDNEDIKYISLMKAIFGAQKMKVAIDIAKLGR 254
Query: 185 QNSAFLQQC 193
++S++LQQ
Sbjct: 255 KDSSYLQQA 263
>gi|441630270|ref|XP_004089523.1| PREDICTED: general transcription factor IIH subunit 3 isoform 3
[Nomascus leucogenys]
Length = 267
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 26/168 (15%)
Query: 46 NAILTLNQLNQVVVIATGYNSCDYVYDSSS------------------TGNQSVGNGRMP 87
N+ L +N+ N++ VIA+ ++Y + +G++ +
Sbjct: 5 NSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLT 64
Query: 88 SLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFR--SGLLHPQP 145
S +++ +++ M K + G+ +LL+GSL+ ALCYI R+ + +
Sbjct: 65 SANEVIVEEIKDLMTKGDIKGQHTE------TLLAGSLAKALCYIHRMNKEIKDNQEMKS 118
Query: 146 RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
RIL ++ + D QY+ MN IF+AQ+ + ID+C L + + Q C
Sbjct: 119 RILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDSDSGLLQQAC 166
>gi|171689210|ref|XP_001909545.1| hypothetical protein [Podospora anserina S mat+]
gi|170944567|emb|CAP70678.1| unnamed protein product [Podospora anserina S mat+]
Length = 396
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 95/225 (42%), Gaps = 39/225 (17%)
Query: 6 SKLYSDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
SKL D SL +++DTNP W++ L S+ + ++ F+NA L L+ NQ+ ++A
Sbjct: 16 SKL-EDVPSLTTIIIDTNPRAWAALGDVLPLSKAIANIQIFINAHLALSNTNQIAILAAH 74
Query: 64 YNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEF-----------MNKDEQLGKQ-E 111
N ++Y + R T L +F + E +G
Sbjct: 75 TNRAVWLYPTPPKPPSEDVEMRDAGKTDTFLNTANKFPQYAQIEHALVTSLRELIGSTIP 134
Query: 112 PEGRIACSLLSGSLSMALCYIQRV-----------------------FRSGLLHPQPRIL 148
P+ + +SG+L++AL ++ + +GL+ RIL
Sbjct: 135 PDLNETTTQMSGALTLALAHMNKTALAYSASQALSNSTAGTTAPGTTASTGLVGFHGRIL 194
Query: 149 CLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
+ S QY+ MNA+F+A S + ID+ L ++ FL+Q
Sbjct: 195 VISVSDSAASQYIPTMNAVFAASMSRIAIDTLALRG-SATFLEQA 238
>gi|150865476|ref|XP_001384710.2| hypothetical protein PICST_83789 [Scheffersomyces stipitis CBS
6054]
gi|149386732|gb|ABN66681.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 376
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 102/249 (40%), Gaps = 70/249 (28%)
Query: 10 SDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
+DD SL+ V+LD +P W S + +L F+NA L+LN NQV IA+
Sbjct: 19 NDDPSLLTVILDVSPAGWYRIRDQTSIDELAKSLLVFMNAHLSLNNSNQVAFIASTPQKS 78
Query: 68 DYV-------YDSSSTGNQSVG-----NGRMPSLCATLLQNLEEFMNKDEQL-------- 107
++ YD T + S G + + P+L + + +F DE +
Sbjct: 79 KFLFPNPEIDYDEIRTSSSSSGSASNQHQKTPTLVSKDM--YRQFRVVDEAVLEELNVVF 136
Query: 108 -----GKQEPEGRIACSLLSGSLSMALCYIQRVFR----------------------SG- 139
G Q+ S LSG+LSMAL Y R+ SG
Sbjct: 137 DEIANGIQDINNN---STLSGALSMALTYTNRMLTLDQSISTTTASAINSTTSMGAGSGS 193
Query: 140 ---------------LLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGA 184
+ + RIL + + + +Y+ +MN+IF+AQ+ ID LG
Sbjct: 194 GNTATNSSTSNPSNSITSMKSRILIVTANDEDDVKYIPVMNSIFAAQKMRTSIDIAKLGF 253
Query: 185 QNSAFLQQC 193
++S++LQQ
Sbjct: 254 EDSSYLQQA 262
>gi|432090055|gb|ELK23655.1| General transcription factor IIH subunit 3 [Myotis davidii]
Length = 247
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 58/105 (55%), Gaps = 10/105 (9%)
Query: 92 TLLQNLEEFMNKDEQLGKQ-EPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRIL 148
+++ +++ M K + G+ EP LL+GSL+ ALCYI R+ + + + RIL
Sbjct: 49 VIVEEIKDLMTKSDIKGQHTEP-------LLAGSLAKALCYIHRMHKEVKDNQEMKSRIL 101
Query: 149 CLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
++ + D QY+ MN IF+AQ+ + ID+C L + + Q C
Sbjct: 102 VIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDSDSGLLQQAC 146
>gi|358366716|dbj|GAA83336.1| transcription factor TFIIH complex subunit [Aspergillus kawachii
IFO 4308]
Length = 386
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 98/242 (40%), Gaps = 64/242 (26%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ S +L S + ++L F+NA L N N+V V+++ + ++Y
Sbjct: 20 SLLTIILDTNPHAWALLSPTLPLSTAIANILVFINAHLASNYANEVAVVSSHTSQATWLY 79
Query: 72 ----DSSSTGNQSVGNGRMPSLCATL------------LQNLEEFMNKDEQLGKQ----- 110
+S N +G +P + F +EQ+
Sbjct: 80 PVEKSPNSNSNNPDPDGDIPMPTQQPQPPSNTTTTTTNINKYRPFRIVEEQVSSHLHNLM 139
Query: 111 ---EPEG--RIACSLLSGSLSMALCYIQR------------VFRSGLLHP---------- 143
P ++++G+L++AL +I R + S P
Sbjct: 140 TQTTPSTLQSTTSTMMAGALTLALSHINRRTLAWNEAHGGDIDTSNPNDPSSTTSTSTSS 199
Query: 144 -----------QPRILCLQ--GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFL 190
Q RIL L S QY+ IMNAIF+ QR +PID C + ++ FL
Sbjct: 200 SNTKGTAESTLQSRILILSVSSSTGSAHQYIPIMNAIFACQRLHIPIDVCKVSG-DAVFL 258
Query: 191 QQ 192
QQ
Sbjct: 259 QQ 260
>gi|410976500|ref|XP_003994658.1| PREDICTED: general transcription factor IIH subunit 3 [Felis catus]
Length = 407
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 30/152 (19%)
Query: 8 LYSDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIAT 62
L D+++L+V+++DTNP +W L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 60 LVEDELNLLVIIVDTNPIWWGKQGLKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIAS 119
Query: 63 GYNSCDYVYDSSS---------TGNQS-------VGNGRMPSLCAT---LLQNLEEFMNK 103
++Y + GN S +G+ A + + +++ M K
Sbjct: 120 HIQESRFLYPGKNGRLGDFFGDPGNPSSEFSPSGSKDGKYELFTAANEVIAEEIKDLMTK 179
Query: 104 DEQLGKQEPEGRIACSLLSGSLSMALCYIQRV 135
+ G+ +LL+GSL+ ALCYI R+
Sbjct: 180 SDIKGQHTE------TLLAGSLAKALCYIHRM 205
>gi|341038752|gb|EGS23744.1| putative transcription factor [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 429
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 98/238 (41%), Gaps = 60/238 (25%)
Query: 10 SDDV-SLVVVLLDTNPFFWSSSS--LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS 66
+DD+ SL +++DTNP W++ + L S+ + ++L F+NA L + NQV +IA+ N
Sbjct: 18 TDDIPSLRTIIIDTNPRAWAALADVLPLSKAIANILIFVNAHLAFSNSNQVAIIASHTNR 77
Query: 67 CDYVY------------DSSSTGNQSVGNGRMPSLC---ATLLQNLEEFMNKDEQLGKQE 111
++Y + +S G+ P +LL ++ M+
Sbjct: 78 AVWLYPQPPEPLPSGSSSHDAAARKSATIGKYPQFAQIEKSLLSSIRALMDD-----TTP 132
Query: 112 PEGRIACSLLSGSLSMALCYIQRVFRS--------------------------------- 138
+ + +SG+L++AL +I + S
Sbjct: 133 SDLDTTTTQISGALTLALAHINKTALSLTASNTAAAAVATGHSLTAGSAASVAAKAASTS 192
Query: 139 ---GLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
GL RIL + S QY+ MNA+F+A + + ID+ L ++ FL+Q
Sbjct: 193 TSAGLAGLHARILIISVSDSSAAQYIPTMNAVFAAAHARIAIDTLALRG-SATFLEQA 249
>gi|169607795|ref|XP_001797317.1| hypothetical protein SNOG_06960 [Phaeosphaeria nodorum SN15]
gi|160701493|gb|EAT85611.2| hypothetical protein SNOG_06960 [Phaeosphaeria nodorum SN15]
Length = 312
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 96/214 (44%), Gaps = 45/214 (21%)
Query: 14 SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ V+LDTNP W+ SS+S S L ++L F+NA L N+ G +
Sbjct: 20 SLLAVVLDTNPHAWAHLSSSISLSAALANILVFINAHLASGNANESRNGTNGDVEMNGAE 79
Query: 72 DSSSTGNQSVGNGRMPSLC-ATLLQNLEEFMNKDEQLGKQEPEGRIAC---SLLSGSLSM 127
D+ ++ R +L + +L+N + + ++ E +A +L+ G++SM
Sbjct: 80 DNKPYIAENPNKYRAFALVESAILKNFAKLL-------EETNESHLAATPTTLIGGAISM 132
Query: 128 ALCYIQRVFRSGLLHP----------------------------QPRILCLQGSPDGPEQ 159
AL YI +S +LH RIL + S D Q
Sbjct: 133 ALSYIN---KSTILHAPTGASAEITSVAAMADTDNSTHLDRIALTSRILIVSVSGDLANQ 189
Query: 160 YVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
Y+ +MN+IF+AQR +PID L A ++ LQQ
Sbjct: 190 YIPVMNSIFAAQRKKIPIDILKL-AGDTVLLQQA 222
>gi|124513782|ref|XP_001350247.1| conserved Plasmodium protein, unknown function [Plasmodium
falciparum 3D7]
gi|23615664|emb|CAD52656.1| conserved Plasmodium protein, unknown function [Plasmodium
falciparum 3D7]
Length = 326
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 84/191 (43%), Gaps = 23/191 (12%)
Query: 16 VVVLLDTNPFFWSS-----------SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
+++++D N W +L +FL V F+ + ++ +I+T
Sbjct: 28 LILIIDVNLLIWCEGVQIKFENNVIRTLKLHEFLKSVFQFIRFYCIMCNSERICIISTCS 87
Query: 65 NSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGS 124
N+C +Y++ + + N C+ L +F+N++++ K E S LS +
Sbjct: 88 NNCKIIYENYISF--AKNNLTEKDFCSDTYDKLVDFINENKKEKKSE-------SALSSA 138
Query: 125 LSMALCYIQRVFRSGLLHPQPRILCLQGSPDG--PEQYVAIMNAIFSAQRSMVPIDSCYL 182
L++ALCY R+ R+ + R+ L S QY +MN ++A+R+ + ID L
Sbjct: 139 LTIALCYNNRI-RNLYENINTRLFLLDISKSHYYTNQYTQLMNIAYNAKRNNIIIDVFSL 197
Query: 183 GAQNSAFLQQC 193
+ Q C
Sbjct: 198 NYKTQILEQIC 208
>gi|21410252|gb|AAH31030.1| Unknown (protein for IMAGE:4724313), partial [Homo sapiens]
Length = 235
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 8/104 (7%)
Query: 92 TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILC 149
+++ +++ M K + G+ +LL+GSL+ ALCYI R+ + + + RIL
Sbjct: 37 VIVEEIKDLMTKSDIKGQHTE------TLLAGSLAKALCYIHRMNKEVKDNQEMKSRILV 90
Query: 150 LQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
++ + D QY+ MN IF+AQ+ + ID+C L + + Q C
Sbjct: 91 IKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDSDSGLLQQAC 134
>gi|389644740|ref|XP_003720002.1| RNA polymerase II transcription factor B subunit 4 [Magnaporthe
oryzae 70-15]
gi|351639771|gb|EHA47635.1| RNA polymerase II transcription factor B subunit 4 [Magnaporthe
oryzae 70-15]
gi|440470636|gb|ELQ39698.1| RNA polymerase II transcription factor B subunit 4 [Magnaporthe
oryzae Y34]
gi|440480828|gb|ELQ61470.1| RNA polymerase II transcription factor B subunit 4 [Magnaporthe
oryzae P131]
Length = 380
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 102/243 (41%), Gaps = 67/243 (27%)
Query: 11 DDVSLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
D SL+VV++DTNP W+ L S+ + ++L F+NA L L+ + V VIA +
Sbjct: 17 DTPSLLVVVIDTNPRAWALLRDVLPISKAIANILVFVNAHLALSSSHSVAVIAAHTHRAV 76
Query: 69 YVY------------DSSSTGNQSVGNGRMPS------------LCATLLQNLEEFMNKD 104
++Y D T + + + P+ + +TLL +L + +
Sbjct: 77 WLYPSPPKPPVRDANDVEMTDADAGKDKKQPATSSANKLPQFAHIESTLLSSLHDLI--- 133
Query: 105 EQLGKQEPEGRIACSLLSGSLSMALCYIQRV----FRSGL--LHPQP------------- 145
Q + +L+SG LS+AL +I + +G+ +P
Sbjct: 134 -QSTTKAELASTTTTLISGGLSLALAHINKTKELAMATGIDATKAEPAAPGVSASTAGAG 192
Query: 146 ---------------RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYL-GAQNSAF 189
RIL + S +QY+ MNA+F+A + VP+D L GA + F
Sbjct: 193 VNGGGGSAARTVLHSRILTVSVSDSSADQYIPTMNAVFAASSAGVPLDVLALRGA--APF 250
Query: 190 LQQ 192
LQQ
Sbjct: 251 LQQ 253
>gi|189241296|ref|XP_975136.2| PREDICTED: similar to transcription factor TFIIH-subunit, putative
[Tribolium castaneum]
gi|270013170|gb|EFA09618.1| hypothetical protein TcasGA2_TC011739 [Tribolium castaneum]
Length = 232
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 20/108 (18%)
Query: 92 TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQP------ 145
T+ QNL + + ++ E SLL+G+++MALCYI R+ R+ +P
Sbjct: 37 TIKQNLAKLLATEKSTLVTE-------SLLAGAIAMALCYIARIQRT-----KPPGCVLN 84
Query: 146 -RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
RIL + GS D QY+ MN F+AQ+ + ID C L Q+ + LQQ
Sbjct: 85 SRILVVTGSGDSASQYMNYMNVFFTAQKQGIVIDVCALD-QHLSLLQQ 131
>gi|321265019|ref|XP_003197226.1| hypothetical protein CGB_M0140C [Cryptococcus gattii WM276]
gi|317463705|gb|ADV25439.1| Hypothetical protein CGB_M0140C [Cryptococcus gattii WM276]
Length = 323
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 93/238 (39%), Gaps = 55/238 (23%)
Query: 14 SLVVVLLDTNPFFW---------------------SSSSLSFSQFLTHVLAFLNAILTLN 52
S ++V+LDT+P W SS S QF+T ++ FLNA L
Sbjct: 6 STLIVILDTHPLSWHLLSHLPPAPPIPDNKVLDTAKSSPTSLHQFITILIVFLNAHLASK 65
Query: 53 QLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPS---------LCATLLQNLEEFMNK 103
N+VVV +Y S+ + G G P+ L + + L+E + +
Sbjct: 66 WGNEVVVYTASAGKATLIYPPSNDKLRQRGEGGKPNANVYRPFQVLDERIEEGLKEVVRE 125
Query: 104 DEQLGKQEPEGRI-ACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDG------ 156
++Q E G I + +L+ ALC+I R S H P L P+
Sbjct: 126 EQQKLDTEGPGFINEPPAMVSALTKALCFINRRILSS-AHNDPTALPPSSDPNNNNGDTS 184
Query: 157 ----PEQ----------YVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQCMSDRLLT 200
P + YV +MN +F+AQ++ D L S+ + S RLLT
Sbjct: 185 GGLLPSKERRQQRMRGGYVGLMNCVFAAQKAAKSPDRYPLP---SSIYDRFFSSRLLT 239
>gi|255727412|ref|XP_002548632.1| hypothetical protein CTRG_02929 [Candida tropicalis MYA-3404]
gi|240134556|gb|EER34111.1| hypothetical protein CTRG_02929 [Candida tropicalis MYA-3404]
Length = 369
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 100/231 (43%), Gaps = 48/231 (20%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSS--LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
+DD SL+ ++LD + W + +S +L FLN L+LN NQV I +
Sbjct: 20 NDDPSLLTIILDLSLKGWFNIKDLISIQDITKSLLVFLNGHLSLNNSNQVAFIVSSSKGS 79
Query: 68 DYVY-DSSSTGNQSVGN--GRMPSLCA-------TLLQNLEEFMNK---DEQLGKQEPEG 114
++Y D ++ GN + + G+ P + ++L L +F+ + + ++
Sbjct: 80 KFLYPDLTTNGNNTTEDFGGQFPGMYRQFKMVDQSVLHQLNKFIEEVMATPEEEEENGRR 139
Query: 115 RIACSLLSGSLSMALCYIQRVFR---------------------------------SGLL 141
R + L+G+LSMAL Y R+
Sbjct: 140 RRTTNTLTGALSMALTYTNRMLTLDQTITTTTASAMTTSTLESTSNNNTSSSGSASVSTT 199
Query: 142 HPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
+ R+L + + D +Y+ +MN IF+AQ+ V ID LG +NS++LQQ
Sbjct: 200 GIKSRVLIVSANDDDDIKYIPLMNCIFAAQKMKVSIDVAKLGHKNSSYLQQ 250
>gi|119618835|gb|EAW98429.1| general transcription factor IIH, polypeptide 3, 34kDa, isoform
CRA_d [Homo sapiens]
Length = 200
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 76/149 (51%), Gaps = 23/149 (15%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVYDSSSTGNQSVGN-----GRMPSLCAT--------LLQNLEEFMNKD--EQLGK 109
++Y N +G+ G P + LL + E + ++ + + K
Sbjct: 65 QESRFLYPGK---NGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTK 121
Query: 110 QEPEGRIACSLLSGSLSMALCYIQRVFRS 138
+ +G+ +LL+GSL+ ALCYI R+ +
Sbjct: 122 SDIKGQHTETLLAGSLAKALCYIHRMNKE 150
>gi|320167472|gb|EFW44371.1| general transcription factor IIH [Capsaspora owczarzaki ATCC 30864]
Length = 381
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 6/80 (7%)
Query: 119 SLLSGSLSMALCYIQRVFRSGLLHP----QPRILCLQGSPDGPEQYVAIMNAIFSAQRSM 174
S L SLS+ALC+I + R+ L P + RIL + + D P YV +MN IF+AQ+
Sbjct: 210 SQLVSSLSVALCHINKTRRA--LPPGVVCRSRILVVHAAEDVPAHYVQLMNTIFAAQKLG 267
Query: 175 VPIDSCYLGAQNSAFLQQCM 194
V ID+ L +S FLQQ +
Sbjct: 268 VIIDALILTPDDSGFLQQAV 287
>gi|428673522|ref|NP_001258795.1| general transcription factor IIH subunit 3 isoform b [Homo sapiens]
Length = 265
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 74/143 (51%), Gaps = 17/143 (11%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVY--DSSSTGNQSVGNGRMPSLCAT--------LLQNLEEFMNKD--EQLGKQEP 112
++Y + G+ G P + LL + E + ++ + + K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDI 124
Query: 113 EGRIACSLLSGSLSMALCYIQRV 135
+G+ +LL+GSL+ ALCYI R+
Sbjct: 125 KGQHTETLLAGSLAKALCYIHRM 147
>gi|441630267|ref|XP_004089522.1| PREDICTED: general transcription factor IIH subunit 3 isoform 2
[Nomascus leucogenys]
Length = 265
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 72/149 (48%), Gaps = 29/149 (19%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVYDSSS------------------TGNQSVGNGRMPSLCATLLQNLEEFMNKDEQ 106
++Y + +G++ + S +++ +++ M K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKGDI 124
Query: 107 LGKQEPEGRIACSLLSGSLSMALCYIQRV 135
G+ +LL+GSL+ ALCYI R+
Sbjct: 125 KGQHTE------TLLAGSLAKALCYIHRM 147
>gi|313239039|emb|CBY14022.1| unnamed protein product [Oikopleura dioica]
Length = 291
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 93/201 (46%), Gaps = 32/201 (15%)
Query: 14 SLVVVLLDTNPFFW----------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
SL+ V+LD NP W +S S SF + L L F+++ L + N+VVV+
Sbjct: 9 SLIAVVLDLNPLAWGFRAAQDAQRTSKSESFVKALDATLTFISSYLLMTHGNKVVVVGAH 68
Query: 64 -------YNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRI 116
+ S Y +++S N+ + R+ LC +L L+E + + P R
Sbjct: 69 PLGAEILHPSDTYSGNTASMVNRQI-EARVNELCRGVL--LDETIAD----SRTSPASR- 120
Query: 117 ACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDG-PEQYVAIMNAIFSAQRSMV 175
+ +LS ALC I R RS P R++ ++ D QY+ ++N ++A+ V
Sbjct: 121 ----FNNALSKALCCINR-MRSEKDLPA-RLMVMKCGGDFLSHQYLPLINCAYAAEHLKV 174
Query: 176 PIDSCYLGAQNSAFLQQCMSD 196
ID+ L A+ + Q MSD
Sbjct: 175 SIDTVVLEAETDVPVLQQMSD 195
>gi|225712364|gb|ACO12028.1| General transcription factor IIH subunit 3 [Lepeophtheirus
salmonis]
gi|290562788|gb|ADD38789.1| General transcription factor IIH subunit 3 [Lepeophtheirus
salmonis]
Length = 305
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 21/189 (11%)
Query: 15 LVVVLLDTNP----FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYV 70
L+++++D NP F ++L+ L ++L F NA L L+ N + + + + ++
Sbjct: 17 LLIIVMDMNPNQKLFLHDPTALT--SVLDNLLCFANAHLMLHPSNALATLGSMASGSYFL 74
Query: 71 Y---DSSSTGN---QSVGNGRMPSLCATLLQ-NLEEFMNKDEQLGKQEPEGRIACSLLSG 123
Y D + N Q G + +L T ++ E + + + Q S LSG
Sbjct: 75 YPPPDDPAADNEIRQLDGQYELFTLVETTVRSKFIELLQSEAGISSQTD------SPLSG 128
Query: 124 SLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLG 183
SL+MAL YI R R + RIL + S D QY+ MN F+AQ+ V +D+C L
Sbjct: 129 SLAMALSYINRR-RKENMDLSARILVITASGDTASQYMNYMNVFFTAQKLDVLLDTCMLQ 187
Query: 184 AQNSAFLQQ 192
+S LQQ
Sbjct: 188 I-DSPLLQQ 195
>gi|328769012|gb|EGF79057.1| hypothetical protein BATDEDRAFT_90182 [Batrachochytrium
dendrobatidis JAM81]
Length = 153
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 29/155 (18%)
Query: 41 VLAFLNAILTLNQLNQVVVIATGYNSCDYVYD----SSSTGNQSVGNGRMPSLCATLLQN 96
++ +NA L ++ N + VI T S +Y +S + SVG +P + TL
Sbjct: 1 MMVLVNAHLAMHHHNSLAVIGTTSTSSRLLYPPPSLASVSDRDSVGAASLPGMTGTLSTA 60
Query: 97 LE-------------------EFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFR 137
E +F + D + +Q L+ +S A +I ++
Sbjct: 61 AESALPVGSTTLSKKPANVYKQFFDVDTHIVEQ------LRRLVLADVSAAPKHINKMQS 114
Query: 138 SGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQR 172
S Q RIL L SPDG QY+ IMNAIF+AQ+
Sbjct: 115 STTPDRQSRILVLSVSPDGSAQYIPIMNAIFAAQK 149
>gi|402084346|gb|EJT79364.1| RNA polymerase II transcription factor B subunit 4 [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 382
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 102/238 (42%), Gaps = 55/238 (23%)
Query: 9 YSDDV-SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
+ D++ SL+ V++DTNP W+ L S+ + ++L ++NA L L+ LNQV +IA +
Sbjct: 17 HVDEIPSLLAVVVDTNPSAWALLRDVLPISKAIANILIYVNAHLALSNLNQVAIIAAHAH 76
Query: 66 SCDYVYDSSSTG---NQSVGNGRMPSLCAT---------LLQNLEEFMNKD-------EQ 106
++Y S + G+ M AT + L +F + + +
Sbjct: 77 RARWLYPSPPNPRPRKDAAGDVEMADAAATSQNSRTRAAAAKKLPQFAHIESAVLDSLQA 136
Query: 107 LGKQEPEGRIA---CSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPE----- 158
L ++ +A +L+SG+L++AL +I +V + L SP
Sbjct: 137 LIRETSPAEVASTTTTLVSGALTLALAHINKVREAALGAGFAERSAAAASPGSTAIPAGA 196
Query: 159 ------------------------QYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
QY+ MNA+F+A + VP+D L N++FLQQ
Sbjct: 197 GNVGAAAAVRARILVVSVSDSSASQYIPTMNAVFAASHASVPVDVVALRG-NASFLQQ 253
>gi|367035398|ref|XP_003666981.1| hypothetical protein MYCTH_2312237 [Myceliophthora thermophila ATCC
42464]
gi|347014254|gb|AEO61736.1| hypothetical protein MYCTH_2312237 [Myceliophthora thermophila ATCC
42464]
Length = 433
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 101/245 (41%), Gaps = 70/245 (28%)
Query: 10 SDDV-SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS 66
+DD+ SL +++DTNP W++ L S+ + ++L F+N L + NQV +IA N
Sbjct: 18 TDDIPSLCTIIIDTNPRAWAALNEVLPVSKAIANILVFVNTHLAFSNSNQVALIAAHSNR 77
Query: 67 CDYVY---------------DSSSTGNQSVGNGRMPSLC---ATLLQNLEEFMNK--DEQ 106
++Y D+SS +++ + P +LL +L ++ D
Sbjct: 78 AVWLYPTPPKQAAPRDVDMQDASSNASKASSANKYPQFAQIEKSLLTSLRALIDDTTDAD 137
Query: 107 LGKQEPEGRIACSLLSGSLSMALCYIQRVFRS---------------------------- 138
L P+ +SG+L++AL +I + S
Sbjct: 138 LSTTTPQ-------ISGALTLALAHINKTALSFSASATAAAAHAAATTGTAVTAGATVGP 190
Query: 139 -----------GLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNS 187
GL RIL + S P QY+ MNA+F+A + V ID+ L ++
Sbjct: 191 APVASTSTSSGGLAGLHARILIISVSDSAPAQYIPTMNAVFAAAHARVAIDTLAL-RGSA 249
Query: 188 AFLQQ 192
FL+Q
Sbjct: 250 TFLEQ 254
>gi|71004806|ref|XP_757069.1| hypothetical protein UM00922.1 [Ustilago maydis 521]
gi|46096873|gb|EAK82106.1| hypothetical protein UM00922.1 [Ustilago maydis 521]
Length = 422
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 100/264 (37%), Gaps = 86/264 (32%)
Query: 15 LVVVLLDTNPFFWS--------------SSSLSFSQFLTHVLAFLNAILTLNQLNQVVV- 59
+V++LD NP W+ SS ++ L ++ FLNA + + N + +
Sbjct: 36 FLVLVLDINPLAWTRRSESLDKGKYKQVSSDVALEDALAAIMIFLNAHMAMQHENGLAIY 95
Query: 60 IATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQN-----LEEFMNKDEQL------- 107
A G + +Y ++S ++ G G + S +T Q + F D+ L
Sbjct: 96 AAAGTGTAQLLYSTASFSAKATGTGVVNSAASTSAQKPDANTYQHFKLVDDHLEQGIRAT 155
Query: 108 -------GKQEPEG--------RIACSLLSGS--------LSMALCYIQRV--------- 135
K+ E + + LS S LS ALC++ R+
Sbjct: 156 CKSMFDRAKKAQEAVHASADSEAVKHATLSRSINVGIVSALSQALCHLNRLGLSDATDAA 215
Query: 136 -----------FRSGLLHP----------------QPRILCLQGSPDGPEQYVAIMNAIF 168
R+G + + RIL L + D QY+ +MN IF
Sbjct: 216 NTGNGIAATAQTRAGGANTAQGAGGSVGAGSIGSFKSRILILSVTQDASTQYIPMMNCIF 275
Query: 169 SAQRSMVPIDSCYLGAQNSAFLQQ 192
+AQ+ + ID C L +++ FLQQ
Sbjct: 276 AAQKKGITIDVCKLFGKDTVFLQQ 299
>gi|320594208|gb|EFX06611.1| transcription factor tfiih subunit [Grosmannia clavigera kw1407]
Length = 429
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 103/275 (37%), Gaps = 102/275 (37%)
Query: 14 SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W++ + L S+ + ++L F+N+ L L+ N+V V+A+ N ++Y
Sbjct: 20 SLLTIVLDTNPRAWAALAAVLPLSKAVANILVFVNSHLALSSTNRVAVVASHCNRAVWLY 79
Query: 72 DSSST-----------------GNQSVGNGRMPS--------------------LCATLL 94
+ + + + PS + TLL
Sbjct: 80 PTPAGSSLLPKKPPSDGLDVDMADAPASHPHRPSHPDPADQSGRSANKFPQFREIETTLL 139
Query: 95 QNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVF------------------ 136
Q++ + ++ E +LLSG+L++AL +I +
Sbjct: 140 QSVHDLVSSTAAADLDE-----TTTLLSGALTLALAHINKTALTIPAAAAAANDGGSGGK 194
Query: 137 -------------------------------RSGLLHP------QPRILCLQGSPDGPEQ 159
RSG P RIL + S P Q
Sbjct: 195 RSRPRPGGVLAGSATSGNAKKTGTSAGLADSRSGKTDPVDDVGLHARILVISVSDSSPAQ 254
Query: 160 YVAIMNAIFSAQRSMVPIDSCYL-GAQNSAFLQQC 193
Y+A MNA+F+A + V ID L GA + FLQQ
Sbjct: 255 YIATMNAVFAAAHAGVAIDVLALRGA--ATFLQQA 287
>gi|164662823|ref|XP_001732533.1| hypothetical protein MGL_0308 [Malassezia globosa CBS 7966]
gi|159106436|gb|EDP45319.1| hypothetical protein MGL_0308 [Malassezia globosa CBS 7966]
Length = 276
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 87/221 (39%), Gaps = 60/221 (27%)
Query: 15 LVVVLLDTNPFFWSSSS-----------------LSFSQF---LTHVLAFLNAILTLNQL 54
+VV+LD N + W S ++FS + VL FLNA +
Sbjct: 23 FLVVILDLNAYAWQHVSETAKESEPSSTPSQQADVAFSTLKDTILSVLVFLNAYTAMQHG 82
Query: 55 NQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMP-----SLCATLLQNLEEFMN------K 103
N +VV + +Y SS + + R P S C Q + +
Sbjct: 83 NGLVVYGAATGTARLLYSSSPHVHPDTHSRRTPQDTHVSACLPFKQMDDAVFHGMRALFD 142
Query: 104 DEQLGKQEPEGRIACSLLSGSLSMALCYIQRVF-----------RSGLLHPQPR------ 146
D + G + P G + +L++ALC++ R+ SG L + R
Sbjct: 143 DARDGARGPVGMVR------ALALALCHMHRLSTVLSESTTTDPHSGALGARTRRGRNTS 196
Query: 147 ----ILCLQGSPDGPEQYVAIMNAIFSAQRSMVPID--SCY 181
IL L +PD QYV +MN IFSAQ+ + +D SC+
Sbjct: 197 FLQRILVLSATPDVSAQYVPMMNCIFSAQKQGIQVDARSCF 237
>gi|58261942|ref|XP_568381.1| hypothetical protein CNM00130 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57230554|gb|AAW46864.1| hypothetical protein CNM00130 [Cryptococcus neoformans var.
neoformans JEC21]
Length = 340
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 84/211 (39%), Gaps = 52/211 (24%)
Query: 14 SLVVVLLDTNPFFW---------------------SSSSLSFSQFLTHVLAFLNAILTLN 52
S ++++LDT+P W +SS S QF+T + FLNA L
Sbjct: 6 STLILVLDTHPLSWHLLAHLPPAPPLPDNKILDNATSSPTSLDQFITILTVFLNAHLASK 65
Query: 53 QLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSL-----CATLLQNLEEFMNK--DE 105
N+VVV + +Y S+ + G G PS L Q +EE + + E
Sbjct: 66 WGNEVVVYTASAGKAELIYPPSNEKIRQRGEGAKPSANMYRPFQILDQGIEEGLKEVVRE 125
Query: 106 QLGKQEPEGRI---ACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDG------ 156
+ GK EG + +L+ ALC+I R S + P L L P+
Sbjct: 126 EEGKLNTEGAGFINQPPAMVSALTKALCFINRRI-SPSVPADPTALPLSSDPNSGTSDTS 184
Query: 157 ----PEQ----------YVAIMNAIFSAQRS 173
P + YV +MN +F+AQ++
Sbjct: 185 GGLLPSKERRQQRMRGGYVGLMNCVFAAQKA 215
>gi|401400847|ref|XP_003880871.1| hypothetical protein NCLIV_039130 [Neospora caninum Liverpool]
gi|325115283|emb|CBZ50838.1| hypothetical protein NCLIV_039130 [Neospora caninum Liverpool]
Length = 580
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 114 GRIAC---SLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDG--PEQYVAIMNAIF 168
GR C S+L+G+LS+ALCY+ +V + P+ R+L L GS D QY+ +MN F
Sbjct: 372 GRSLCGEDSMLAGALSLALCYLNKVAKRSARPPERRVLLLDGSLDRSYSSQYMPLMNLAF 431
Query: 169 SAQRSMVPIDSCYLGAQNSAFLQQ 192
+A + + ID C L S +Q
Sbjct: 432 AAAKGNIVIDCCALCPNPSTISEQ 455
>gi|388582433|gb|EIM22738.1| transcription factor Tfb4 [Wallemia sebi CBS 633.66]
Length = 272
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 9/80 (11%)
Query: 117 ACSLLSGSLSMALCYIQRVF----RSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQR 172
A S L+ +L+ +LC++ R +S RIL + S D P +YV++MN+IF+AQ+
Sbjct: 85 ASSTLASTLAQSLCHVNRKIVQESKSTF-----RILVVAASDDVPPEYVSLMNSIFAAQK 139
Query: 173 SMVPIDSCYLGAQNSAFLQQ 192
S + ID + N+ FLQQ
Sbjct: 140 SKIVIDVVQIYNCNTIFLQQ 159
>gi|378726397|gb|EHY52856.1| transcription initiation factor TFIIH subunit H3 [Exophiala
dermatitidis NIH/UT8656]
Length = 455
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 98/246 (39%), Gaps = 81/246 (32%)
Query: 14 SLVVVLLDTNPFFWSSSSLSFSQF--LTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP WS S + S + ++L F+NA L N N+V VIA+ + ++Y
Sbjct: 20 SLLAIILDTNPAAWSLLSSTLSFSSAVANLLVFINAHLAANYTNKVAVIASHCDKATWLY 79
Query: 72 ------------------------DSSSTGNQSVGNG-RMPSLCATLLQNLEEFMNK--- 103
DS+ +V NG + + + EE NK
Sbjct: 80 PTPTEQEPPPPLSSSSHTNNNDLTDSTKRFKLNVNNGTKNNDSIPSSSSSAEETGNKYRP 139
Query: 104 ----DEQ--------LGKQEPEG--RIACSLLSGSLSMALCYIQR---------VFRSGL 140
+E+ L P+ R ++++G+L++AL YI R + SG
Sbjct: 140 FRLVEEELIHNLTTLLASTSPDAVSRSPTTMIAGALTLALSYINRESIAYAESVIGSSGA 199
Query: 141 LHP--------------------------QPRILCLQGSP--DGPEQYVAIMNAIFSAQR 172
Q RIL + SP D QY+ IMNAIF+ QR
Sbjct: 200 ADTTAAATTNTTTTTGDPNSSSSNNNTSLQSRILLVSVSPSTDLAHQYIPIMNAIFACQR 259
Query: 173 SMVPID 178
+PID
Sbjct: 260 LAIPID 265
>gi|221502054|gb|EEE27800.1| conserved hypothetical protein [Toxoplasma gondii VEG]
Length = 404
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 112 PEGRIAC---SLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDG--PEQYVAIMNA 166
P AC S+L+G+LS+ALC + +V + P+ R+L L GS D QY+ +MN
Sbjct: 193 PRPTTACGEDSMLAGALSLALCCLNKVSKRSARTPERRVLILDGSLDRSYSSQYMPLMNL 252
Query: 167 IFSAQRSMVPIDSCYLGAQNSAFLQQ 192
F+A + + ID C L S +Q
Sbjct: 253 AFAAAKGNIVIDCCALSTNPSTIPEQ 278
>gi|388851454|emb|CCF54856.1| related to TFIIH basal transcription factor complex p34 subunit
[Ustilago hordei]
Length = 423
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 144 QPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
+ RIL L +PD QY+ +MN IF+AQ+ + ID C L ++ FLQQ
Sbjct: 250 KSRILILSVTPDASTQYIPMMNCIFAAQKKGITIDVCKLFGSDTVFLQQ 298
>gi|291239973|ref|XP_002739904.1| PREDICTED: general transcription factor IIH, polypeptide 3,
34kDa-like [Saccoglossus kowalevskii]
Length = 143
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 69/136 (50%), Gaps = 20/136 (14%)
Query: 10 SDDVSLVVVLLDTNPFFW------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
++ SL+VV++D NP +W + L F+Q + +L ++N+ L +++ N+V +IA+
Sbjct: 4 EEESSLLVVIVDVNPIWWGKMRIQDENDLKFTQCMESILVYVNSHLMMHRSNKVAIIASH 63
Query: 64 YNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIAC----- 118
NS ++Y +++ + + E F D+ + K+ + A
Sbjct: 64 TNSSCFLYPTATPTTEEEEDFLRDG-------KYEHFAKIDDTIFKEVKKLMTAHTAELH 116
Query: 119 --SLLSGSLSMALCYI 132
+LL+GSL+MALC I
Sbjct: 117 IDTLLTGSLAMALCCI 132
>gi|237838949|ref|XP_002368772.1| hypothetical protein TGME49_066930 [Toxoplasma gondii ME49]
gi|211966436|gb|EEB01632.1| hypothetical protein TGME49_066930 [Toxoplasma gondii ME49]
Length = 547
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 112 PEGRIAC---SLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDG--PEQYVAIMNA 166
P AC S+L+G+LS+ALC + +V + P+ R+L L GS D QY+ +MN
Sbjct: 336 PRPTTACGEDSMLAGALSLALCCLNKVSKRSARTPERRVLILDGSLDRSYSSQYMPLMNL 395
Query: 167 IFSAQRSMVPIDSCYLGAQNSAFLQQ 192
F+A + + ID C L S +Q
Sbjct: 396 AFAAAKGNIVIDCCALSTNPSTIPEQ 421
>gi|221481332|gb|EEE19726.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 549
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 112 PEGRIAC---SLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDG--PEQYVAIMNA 166
P AC S+L+G+LS+ALC + +V + P+ R+L L GS D QY+ +MN
Sbjct: 338 PRPTTACGEDSMLAGALSLALCCLNKVSKRSARTPERRVLILDGSLDRSYSSQYMPLMNL 397
Query: 167 IFSAQRSMVPIDSCYLGAQNSAFLQQ 192
F+A + + ID C L S +Q
Sbjct: 398 AFAAAKGNIVIDCCALSTNPSTIPEQ 423
>gi|302656245|ref|XP_003019878.1| hypothetical protein TRV_06076 [Trichophyton verrucosum HKI 0517]
gi|291183651|gb|EFE39254.1| hypothetical protein TRV_06076 [Trichophyton verrucosum HKI 0517]
Length = 517
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 6 SKLYSDDVSLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
+ L S D SL+ V+LDTNP W+ +L S + ++L F+NA L N N+V V+A+
Sbjct: 107 TDLISPDPSLLTVILDTNPHAWAQLQETLPLSSAVANLLVFINAHLACNYANKVAVVASH 166
Query: 64 YNSCDYVY 71
+ ++Y
Sbjct: 167 SHQAVWLY 174
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 147 ILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
I+ + + + +QY+ IMN+IF+ QR +PID C L A ++ FLQQ
Sbjct: 338 IISVSSAANSAQQYIPIMNSIFACQRLHIPIDICKL-AGDAVFLQQ 382
>gi|326473589|gb|EGD97598.1| transcription factor TFIIH subunit Tfb4 [Trichophyton tonsurans
CBS 112818]
Length = 415
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 4 APSKLYSDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
A S ++D SL+ V+LDTNP W+ +L S +T++L F+NA L N N+V V+A
Sbjct: 2 ADSGAAANDPSLLTVILDTNPHAWAQLQETLPLSSAVTNLLVFINAHLACNYANKVAVVA 61
Query: 62 TGYNSCDYVY 71
+ + ++Y
Sbjct: 62 SHNHQAVWLY 71
Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 147 ILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ-CMSDR 197
I+ + + D +QY+ IMN+IF+ QR +PID C L A ++ FLQQ C + R
Sbjct: 236 IISVSSAADSAQQYIPIMNSIFACQRLHIPIDICKL-AGDAVFLQQACDATR 286
>gi|134118157|ref|XP_772246.1| hypothetical protein CNBM0140 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254857|gb|EAL17599.1| hypothetical protein CNBM0140 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 385
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 63/152 (41%), Gaps = 31/152 (20%)
Query: 14 SLVVVLLDTNPFFW---------------------SSSSLSFSQFLTHVLAFLNAILTLN 52
S ++++LDT+P W +SS S QF+T + FLNA L
Sbjct: 6 STLILVLDTHPLSWHLLAHLPPAPPLPDNKILDNATSSPTSLDQFITILTVFLNAHLASK 65
Query: 53 QLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLC-----ATLLQNLEEFMNK--DE 105
N+VVV + +Y S+ + G G PS L Q +EE + + E
Sbjct: 66 WGNEVVVYTASAGKAELIYPPSNEKIRQRGEGAKPSANMYRPFQILDQGIEEGLKEVVRE 125
Query: 106 QLGKQEPEGRI---ACSLLSGSLSMALCYIQR 134
+ GK EG + +L+ ALC+I R
Sbjct: 126 EEGKLNTEGAGFINQPPAMVSALTKALCFINR 157
>gi|116204609|ref|XP_001228115.1| hypothetical protein CHGG_10188 [Chaetomium globosum CBS 148.51]
gi|88176316|gb|EAQ83784.1| hypothetical protein CHGG_10188 [Chaetomium globosum CBS 148.51]
Length = 408
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 97/245 (39%), Gaps = 67/245 (27%)
Query: 10 SDDV-SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS 66
+DD+ SL +++DTNP W+ + L S+ + ++L F+NA L + NQV +IA N
Sbjct: 18 TDDIPSLCTIVIDTNPRAWAALTDVLPISKAIANILVFVNAHLAFSNSNQVSIIAAHTNR 77
Query: 67 CDYVYDSSSTGNQS-----------------VGNGRMPSLCATLLQNLEEFMNK--DEQL 107
++Y + +S + + +LL +L +N D L
Sbjct: 78 AVWLYPAPPRQGRSQDVDMQNAASDSKSSSANKYPQFAQIENSLLTSLRALINDTTDADL 137
Query: 108 GKQEPEGRIACSLLSGSLSMALCYIQRVFRS----------------------------- 138
+ +SG+L++AL +I + S
Sbjct: 138 ASTTTQ-------ISGALTLALAHINKTALSFTASSTAAHAATNTGTAMTAGTAVGPNPV 190
Query: 139 --------GLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYL-GAQNSAF 189
GL RIL L S P QY+ MNA+F+A R+ + ID+ L A+
Sbjct: 191 SSTSMNGGGLAGLHARILILSVSDSAPAQYIPTMNAVFAAARARIAIDTLSLRAAEPRGL 250
Query: 190 LQQCM 194
LQ M
Sbjct: 251 LQYLM 255
>gi|224116574|ref|XP_002331930.1| predicted protein [Populus trichocarpa]
gi|222874602|gb|EEF11733.1| predicted protein [Populus trichocarpa]
Length = 79
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 23/30 (76%)
Query: 164 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
MNA FSA RS+VPIDSC +GA N AF QQ
Sbjct: 1 MNATFSAPRSLVPIDSCRVGAHNPAFSQQA 30
>gi|336468231|gb|EGO56394.1| hypothetical protein NEUTE1DRAFT_147077 [Neurospora tetrasperma
FGSC 2508]
gi|350289522|gb|EGZ70747.1| transcription factor Tfb4 [Neurospora tetrasperma FGSC 2509]
Length = 439
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 10 SDDV-SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS 66
+DD+ SL +++DTNP W++ L ++ L ++L F+N+ L N NQV +IA+ N
Sbjct: 18 TDDIPSLYTIIIDTNPRAWAALNDVLPLTKALANILIFVNSHLAFNNSNQVALIASHTNR 77
Query: 67 CDYVYDSSSTGNQSVGNGRMP 87
++Y ++ N GR P
Sbjct: 78 AVWLYPTAPDQNP----GRQP 94
>gi|85078711|ref|XP_956217.1| hypothetical protein NCU01580 [Neurospora crassa OR74A]
gi|16416034|emb|CAB91384.2| related to basic transcription factor 2 (35 kd SU) [Neurospora
crassa]
gi|28917270|gb|EAA26981.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 439
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 10 SDDV-SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS 66
+DD+ SL +++DTNP W++ L ++ L ++L F+N+ L N NQV +IA+ N
Sbjct: 18 TDDIPSLYTIIIDTNPRAWAALNDVLPLTKALANILIFVNSHLAFNNSNQVALIASHTNR 77
Query: 67 CDYVYDSSSTGNQSVGNGRMP 87
++Y ++ N GR P
Sbjct: 78 AVWLYPTAPDQNP----GRHP 94
>gi|224146905|ref|XP_002336364.1| predicted protein [Populus trichocarpa]
gi|222834814|gb|EEE73263.1| predicted protein [Populus trichocarpa]
Length = 80
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 23/30 (76%)
Query: 164 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
MNA FSA RS+VPIDSC +GA N AF QQ
Sbjct: 1 MNATFSAPRSLVPIDSCRVGAHNPAFSQQA 30
>gi|327352824|gb|EGE81681.1| transcription factor TFIIH subunit Tfb4 [Ajellomyces dermatitidis
ATCC 18188]
Length = 426
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ V+LDTNP W+ SL FS + ++L F+NA L N N+V V+A+ + ++Y
Sbjct: 21 SLLTVILDTNPHAWARLEPSLPFSAAIANLLVFINAHLACNYANKVAVVASHCHHATWLY 80
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 147 ILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
I+ L + + Y+ IMN+IF+ QR +PID L A ++AFLQQ
Sbjct: 246 IISLSSTTHAAQHYIPIMNSIFACQRLHIPIDILKL-AGDAAFLQQ 290
>gi|261201796|ref|XP_002628112.1| transcription factor TFIIH subunit Tfb4 [Ajellomyces dermatitidis
SLH14081]
gi|239590209|gb|EEQ72790.1| transcription factor TFIIH subunit Tfb4 [Ajellomyces dermatitidis
SLH14081]
Length = 425
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ V+LDTNP W+ SL FS + ++L F+NA L N N+V V+A+ + ++Y
Sbjct: 21 SLLTVILDTNPHAWARLEPSLPFSAAIANLLVFINAHLACNYANKVAVVASHCHHATWLY 80
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 147 ILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
I+ L + + Y+ IMN+IF+ QR +PID L A ++AFLQQ
Sbjct: 245 IISLSSTTHAAQHYIPIMNSIFACQRLHIPIDILKL-AGDAAFLQQ 289
>gi|239611920|gb|EEQ88907.1| transcription factor TFIIH subunit Tfb4 [Ajellomyces dermatitidis
ER-3]
Length = 425
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ V+LDTNP W+ SL FS + ++L F+NA L N N+V V+A+ + ++Y
Sbjct: 21 SLLTVILDTNPHAWARLEPSLPFSAAIANLLVFINAHLACNYANKVAVVASHCHHATWLY 80
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 147 ILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
I+ L + + Y+ IMN+IF+ QR +PID L A ++AFLQQ
Sbjct: 245 IISLSSTTHAAQHYIPIMNSIFACQRLHIPIDILKL-AGDAAFLQQ 289
>gi|336271807|ref|XP_003350661.1| hypothetical protein SMAC_02333 [Sordaria macrospora k-hell]
gi|380094822|emb|CCC07324.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 409
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 10 SDDV-SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS 66
+DD+ SL +++DTNP W++ L ++ L ++L F+N+ L N NQV +IA+ N
Sbjct: 18 TDDIPSLYTIIIDTNPRAWAALNDVLPLTKALANILIFVNSHLAFNNSNQVALIASHTNR 77
Query: 67 CDYVYDSSSTGN 78
++Y ++ N
Sbjct: 78 AVWLYPTAPDQN 89
>gi|221057700|ref|XP_002261358.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
knowlesi strain H]
gi|194247363|emb|CAQ40763.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
knowlesi strain H]
Length = 323
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 76/177 (42%), Gaps = 24/177 (13%)
Query: 16 VVVLLDTNPFFWSS-----------SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
+++++D N W +L +FL F+ ++ ++ +IAT
Sbjct: 24 LILVVDVNFMIWCEGLKIKFDKNNVKTLGLPEFLKSTFHFVRFYCLMSSAERICIIATSL 83
Query: 65 NSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGS 124
SC +Y++ + + N C L EF+N+++ E S LS +
Sbjct: 84 RSCRILYENYVS--YAKNNLTERDYCEEAYNKLIEFINENKTEKMME-------SNLSSA 134
Query: 125 LSMALCYIQRVFRSGLLHPQPRILCLQGSPDG---PEQYVAIMNAIFSAQRSMVPID 178
L++ALCY R+ + + + RI L S QY +MN ++A+R+ + ID
Sbjct: 135 LAVALCYNHRIV-NMYENMKGRIFLLDISNQSYVYTNQYTQLMNIAYNAKRNNIIID 190
>gi|156101255|ref|XP_001616321.1| hypothetical protein [Plasmodium vivax Sal-1]
gi|148805195|gb|EDL46594.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 323
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 28/179 (15%)
Query: 16 VVVLLDTNPFFWSS-----------SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
+++++D N W +L +FL F+ ++ ++ +IAT
Sbjct: 24 LILVVDVNFMIWCEGLKIKFDKNNVKTLRLPEFLKSTFHFVRFYCLMSNAERICIIATSL 83
Query: 65 NSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFM--NKDEQLGKQEPEGRIACSLLS 122
SC +Y++ + + N C L EF+ NK E++ + S LS
Sbjct: 84 RSCKILYENYVS--YAKNNLTERDYCEEAYNKLIEFLSENKTEKMME---------SSLS 132
Query: 123 GSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDG---PEQYVAIMNAIFSAQRSMVPID 178
+L++ALCY R+ + + + RI L S + QY +MN ++A+R+ + ID
Sbjct: 133 SALAVALCYNHRIV-NMYENMKGRIFLLDISNETYVYTNQYTQLMNIAYNAKRNNIIID 190
>gi|443895518|dbj|GAC72864.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH, subunit TFB4 [Pseudozyma antarctica
T-34]
Length = 425
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 144 QPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
+ RIL L + D QY+ +MN IF+AQ+ + ID C L ++ FLQQ
Sbjct: 253 KSRILILSVTQDASTQYIPMMNCIFAAQKKGITIDVCKLLGNDTVFLQQ 301
>gi|302496747|ref|XP_003010374.1| hypothetical protein ARB_03075 [Arthroderma benhamiae CBS 112371]
gi|291173917|gb|EFE29734.1| hypothetical protein ARB_03075 [Arthroderma benhamiae CBS 112371]
Length = 414
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 4 APSKLYSDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
A S ++D SL+ V+LDTNP W+ +L S + ++L F+NA L N N+V V+A
Sbjct: 2 ADSGAAANDPSLLTVILDTNPHAWAQLQETLPLSSAVANLLVFINAHLACNYANKVAVVA 61
Query: 62 TGYNSCDYVY 71
+ + ++Y
Sbjct: 62 SHSHQAVWLY 71
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 147 ILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ-CMSDR 197
I+ + + + +QY+ IMN+IF+ QR +PID C L A ++ FLQQ C + R
Sbjct: 235 IISVSSAANSAQQYIPIMNSIFACQRLHIPIDICKL-AGDAVFLQQACDATR 285
>gi|327299656|ref|XP_003234521.1| transcription factor TFIIH subunit Tfb4 [Trichophyton rubrum CBS
118892]
gi|326463415|gb|EGD88868.1| transcription factor TFIIH subunit Tfb4 [Trichophyton rubrum CBS
118892]
Length = 413
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 4 APSKLYSDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
A S ++D SL+ V+LDTNP W+ +L S + ++L F+NA L N N+V V+A
Sbjct: 2 ADSGAAANDPSLLTVILDTNPHAWAQLQETLPLSSAVANLLVFINAHLACNYANKVAVVA 61
Query: 62 TGYNSCDYVY 71
+ + ++Y
Sbjct: 62 SHSHQAVWLY 71
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 147 ILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ-CMSDR 197
I+ + + + +QY+ IMN+IF+ QR +PID C L A ++ FLQQ C + R
Sbjct: 234 IISVSSAANSAQQYIPIMNSIFACQRLHIPIDICKL-AGDAVFLQQACDATR 284
>gi|37958350|gb|AAP41125.1| ZK1128.4 [Pristionchus pacificus]
Length = 278
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 22/160 (13%)
Query: 41 VLAFLNAILTLNQLNQVVVIATGYN-SCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEE 99
++ F N L+L Q NQ+++ A G S +YDS + N P + +++ +
Sbjct: 40 IVTFSNVHLSLAQSNQLLLYAYGNGMSKKLLYDSVRSDN--------PDSSSCIIKGIRG 91
Query: 100 FMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSG-------LLHPQPRILCLQG 152
+ ++ G C +L+ +L+ A+C I++ G + + RI+ +
Sbjct: 92 ALRENSTSGDARK-----CGVLAATLATAICQIRKAATLGTNKSEETISGQKGRIVIISL 146
Query: 153 SPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
PD Q+ +MN FSA + + ID LG +SA LQQ
Sbjct: 147 LPDFGSQHSLLMNLFFSAHKHDICIDVVSLGG-SSALLQQ 185
>gi|326480715|gb|EGE04725.1| TFIIH basal transcription factor complex p34 subunit
[Trichophyton equinum CBS 127.97]
Length = 415
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 4 APSKLYSDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
A S ++D SL+ V+LDTNP W+ +L S + ++L F+NA L N N+V V+A
Sbjct: 2 ADSGAAANDPSLLTVILDTNPHAWAQLQETLPLSSAVANLLVFINAHLACNYANKVAVVA 61
Query: 62 TGYNSCDYVY 71
+ + ++Y
Sbjct: 62 SHNHQAVWLY 71
Score = 44.3 bits (103), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 147 ILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ-CMSDR 197
I+ + + D +QY+ IMN+IF+ QR +PID C L A ++ FLQQ C + R
Sbjct: 236 IISVSSAADSAQQYIPIMNSIFACQRLHIPIDICKL-AGDAVFLQQACDATR 286
>gi|343426778|emb|CBQ70306.1| related to TFIIH basal transcription factor complex p34 subunit
[Sporisorium reilianum SRZ2]
Length = 422
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 144 QPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
+ RIL L + D QY+ +MN IF+AQ+ + ID C L ++ FLQQ
Sbjct: 251 KSRILILSVTQDASTQYIPMMNCIFAAQKRGITIDVCKLFGSDTVFLQQ 299
>gi|389584514|dbj|GAB67246.1| hypothetical protein PCYB_112670, partial [Plasmodium cynomolgi
strain B]
Length = 323
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 77/177 (43%), Gaps = 24/177 (13%)
Query: 16 VVVLLDTNPFFW-----------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
+++++D N W + +L +FL F+ ++ ++ +IAT
Sbjct: 24 LILVVDVNFMIWYEGVKIKFDKNNVKTLRLPEFLKSTFHFVRFYCLMSNSERICIIATSL 83
Query: 65 NSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGS 124
SC +Y++ + + N C L EF+N+++ E S LS +
Sbjct: 84 RSCKILYENYVS--YAKNNLTERDYCEEAYNKLIEFINENKTEKMME-------SSLSSA 134
Query: 125 LSMALCYIQRVFRSGLLHPQPRILCLQGSPD---GPEQYVAIMNAIFSAQRSMVPID 178
L++ALCY R+ + + + RI L S QY +MN ++A+R+ + ID
Sbjct: 135 LAVALCYNHRIV-NMYENMKGRIFLLDISNQIYVYTNQYTQLMNIAYNAKRNDIIID 190
>gi|315052780|ref|XP_003175764.1| TFIIH basal transcription factor complex p34 subunit [Arthroderma
gypseum CBS 118893]
gi|311341079|gb|EFR00282.1| TFIIH basal transcription factor complex p34 subunit [Arthroderma
gypseum CBS 118893]
Length = 413
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 11 DDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
+D SL+ V+LDTNP W+ +L S + ++L F+NA L N N+V V+A+ +
Sbjct: 9 NDPSLLTVILDTNPHAWAQLQETLPLSSAVANLLVFINAHLACNYANKVAVVASHSHQAV 68
Query: 69 YVYDS 73
++Y +
Sbjct: 69 WLYPT 73
Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 138 SGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ-CMSD 196
+G L + I+ + + D +QY+ IMN+IF+ QR +PID C L A ++ FLQQ C +
Sbjct: 225 AGALQSRILIISVSSAADSAQQYIPIMNSIFACQRLHIPIDICKL-AGDAVFLQQACDAT 283
Query: 197 R 197
R
Sbjct: 284 R 284
>gi|296815720|ref|XP_002848197.1| TFIIH basal transcription factor complex p34 subunit [Arthroderma
otae CBS 113480]
gi|238841222|gb|EEQ30884.1| TFIIH basal transcription factor complex p34 subunit [Arthroderma
otae CBS 113480]
Length = 413
Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 4 APSKLYSDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
A S S D SL+ V+LDTNP W+ +L S + ++L F+NA L N N+V V+A
Sbjct: 2 AESTSASTDPSLLTVILDTNPHAWAQLQETLPLSSAVANLLVFINAHLACNYSNKVAVVA 61
Query: 62 TGYNSCDYVY 71
+ + ++Y
Sbjct: 62 SHSHQAVWLY 71
Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 147 ILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ-CMSDRLLTLLVE 204
I+ + + D +QY+ IMN+IF+ QR +PID C L A ++ FLQQ C + R + + V+
Sbjct: 234 IVSVSSAADSAQQYIPIMNSIFACQRLHIPIDICKL-AGDAVFLQQACDATRGIYMSVD 291
>gi|68063783|ref|XP_673887.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56492063|emb|CAI02316.1| conserved hypothetical protein [Plasmodium berghei]
Length = 327
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 83/196 (42%), Gaps = 23/196 (11%)
Query: 13 VSLVVVLLDTNPFFWSS-----------SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
+S +++++D N WS ++ SQFL V F ++ ++ +IA
Sbjct: 22 MSHLILVIDVNFLIWSQGLKIKFDKNNIKTVKLSQFLKSVFQFARFYCFMSSSERICIIA 81
Query: 62 TGYNSCDYVYDS--SSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACS 119
T + +Y++ S T N N C + L F+ KD + E + S
Sbjct: 82 TCSGNSKIIYENYISYTKNNLTEND----YCTNAYEKLINFI-KDNNNNSKTYE--MVES 134
Query: 120 LLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDG--PEQYVAIMNAIFSAQRSMVPI 177
LS +L++ALCY R+ + + RI L S QY +MN ++A+R+ + I
Sbjct: 135 TLSSALAIALCYNNRIC-NLYENINSRIFLLDISKSHFYTNQYTQLMNIAYNAKRNNIII 193
Query: 178 DSCYLGAQNSAFLQQC 193
D L + Q C
Sbjct: 194 DVFSLNHKTQILEQIC 209
>gi|70953884|ref|XP_746016.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56526511|emb|CAH87927.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 327
Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 83/196 (42%), Gaps = 23/196 (11%)
Query: 13 VSLVVVLLDTNPFFWSS-----------SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
+S +++++D N WS ++ SQFL V F ++ ++ +IA
Sbjct: 22 MSHLILVIDVNFLIWSQGLKIKFDKNNIKTVKLSQFLKSVFQFTRFYCFMSSSERICIIA 81
Query: 62 TGYNSCDYVYDS--SSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACS 119
T + +Y++ S T N N C L +F+ KD + E + S
Sbjct: 82 TCSGNSKIIYENYISYTKNNLTEND----YCTNAYDKLIKFI-KDNNNNSKTYE--MVES 134
Query: 120 LLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDG--PEQYVAIMNAIFSAQRSMVPI 177
LS +L++ALCY R+ + + RI L S QY +MN ++A+R+ + I
Sbjct: 135 TLSSALAIALCYNNRIC-NLYENINSRIFLLDISKSHFYTNQYTQLMNIAYNAKRNNIII 193
Query: 178 DSCYLGAQNSAFLQQC 193
D L + Q C
Sbjct: 194 DVFSLNHKTQILEQIC 209
>gi|82541502|ref|XP_724989.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23479826|gb|EAA16554.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 327
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 82/196 (41%), Gaps = 23/196 (11%)
Query: 13 VSLVVVLLDTNPFFWSS-----------SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
+S +++++D N WS ++ SQFL V F ++ ++ +IA
Sbjct: 22 MSHLILVIDVNFLIWSQGLKIKFDKNNIKTVKLSQFLKSVFQFTRFYCFMSSSERICIIA 81
Query: 62 TGYNSCDYVYDS--SSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACS 119
T + +Y++ S T N N C L F+ KD + E + S
Sbjct: 82 TCSGNSKIIYENYISYTKNNLTEND----YCTNAYDKLINFI-KDNNNNTKTYE--MVES 134
Query: 120 LLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDG--PEQYVAIMNAIFSAQRSMVPI 177
LS +L++ALCY R+ + + RI L S QY +MN ++A+R+ + I
Sbjct: 135 TLSSALAIALCYNNRIC-NLYENINSRIFLLDISKSHFYTNQYTQLMNIAYNAKRNKIII 193
Query: 178 DSCYLGAQNSAFLQQC 193
D L + Q C
Sbjct: 194 DVFSLNHKTQILEQIC 209
>gi|406602443|emb|CCH45984.1| RNA polymerase II transcription factor B subunit 4 [Wickerhamomyces
ciferrii]
Length = 361
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 88/201 (43%), Gaps = 37/201 (18%)
Query: 27 WSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYD-SSSTGNQSVGN 83
W S LS L ++ +NA L LN NQ+ +IA+ + ++Y ++ + S
Sbjct: 21 WQSIEDKLSIKSMLESLVVAMNAHLALNNSNQIAIIASHTDGAKFLYPYNNQKESTSRPK 80
Query: 84 GRMPSLCATLLQNLE-------------------------EFMNKDEQLGKQ------EP 112
R L A Q +E +F DE+L + EP
Sbjct: 81 TRSDELQAEDQQGIESRSISPEASQTDNNTKHYINSSMYRQFKVVDEKLLENLYNLYNEP 140
Query: 113 -EGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQ 171
+ LS SLS+ L YI ++ + L + +IL + S D +Y+ IMN IF+AQ
Sbjct: 141 IPTTPPKNHLSSSLSLGLTYINKIQSNDSLM-KAKILIVNISQDEHLKYIPIMNCIFAAQ 199
Query: 172 RSMVPIDSCYLGAQNSAFLQQ 192
+ V ID C LG N+ FLQQ
Sbjct: 200 KMKVSIDVCQLGL-NATFLQQ 219
>gi|123976711|ref|XP_001314576.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121897129|gb|EAY02259.1| hypothetical protein TVAG_030750 [Trichomonas vaginalis G3]
Length = 284
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 22/188 (11%)
Query: 14 SLVVVLLDTNPFFWSS-SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYD 72
+ +L+D NP W + F F+ H+ +L ++ + + V+A + ++++
Sbjct: 7 EFLAILIDVNPLEWKEMKDIKFDGFMNHLFLYLKQMILSDCILPPCVLAYNQSHAEFIFP 66
Query: 73 SSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPE--GRIAC------SLLSGS 124
+ P+ N E+ N E + Q E GR A L +
Sbjct: 67 EPGRTKDVINQKFNPT-------NQEQIKNYFENIIIQIAEFNGRSASIPPTPHVRLDVA 119
Query: 125 LSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGA 184
LS +LC + + + + RIL SP+ QY N +F+A+R V ID +L +
Sbjct: 120 LSKSLCLMNNLPNKNI---KKRILAFSVSPETGSQYD---NLLFAAKRLDVVIDVLFLNS 173
Query: 185 QNSAFLQQ 192
FL Q
Sbjct: 174 NRLCFLSQ 181
>gi|195111388|ref|XP_002000261.1| GI10128 [Drosophila mojavensis]
gi|193916855|gb|EDW15722.1| GI10128 [Drosophila mojavensis]
Length = 334
Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 86/196 (43%), Gaps = 9/196 (4%)
Query: 6 SKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
S L ++ ++VV D N + F++ + + F NA L + N +V+ +
Sbjct: 21 SGLPEKNMLIIVVDYDANQSYVKRDLELFTKVVCSLTMFGNAYLLQSSENDLVIWSCSSY 80
Query: 66 SCDYVYDSSSTGNQSVGNGRMPSLCAT---LLQNLEEFMNKDEQLGK---QEPEGRIACS 119
+ + +Y + ++ L L +++D + K +E E + +
Sbjct: 81 AVNVIYPEKLIDPTKDSDSQLEELAVVESLTRMRLFNLISQDITVMKRQAKEEEEQTVTA 140
Query: 120 LLSGSLSMALCYIQRVFR--SGLLHPQPRILCLQGSPDGPEQYVAI-MNAIFSAQRSMVP 176
LL G+++M L Y+ R R + + H + RIL + GS + P + MNA A R V
Sbjct: 141 LLPGTVAMVLSYLSRCRREVAKVAHIRGRILIVSGSKEPPIPLATMQMNAFQVAARMGVV 200
Query: 177 IDSCYLGAQNSAFLQQ 192
ID C L ++S L+
Sbjct: 201 IDVCALELESSYMLRH 216
>gi|367054924|ref|XP_003657840.1| hypothetical protein THITE_2123949 [Thielavia terrestris NRRL
8126]
gi|347005106|gb|AEO71504.1| hypothetical protein THITE_2123949 [Thielavia terrestris NRRL
8126]
Length = 459
Score = 43.9 bits (102), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 10 SDDV-SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS 66
+DD+ SL +++DTNP W++ L S+ + ++L F+NA L + NQV +IA+ N
Sbjct: 18 TDDIPSLCTIIIDTNPRAWAALADVLPISKAIANILIFVNAHLAFSNSNQVALIASHTNR 77
Query: 67 CDYVY 71
++Y
Sbjct: 78 AVWLY 82
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 139 GLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
GL RIL L S P QY+ MNA+F+A + + ID+ L ++ FL+Q
Sbjct: 207 GLAGMHARILILSVSDSSPAQYIPTMNAVFAAAHARIAIDTLSLRG-SATFLEQ 259
>gi|302830812|ref|XP_002946972.1| hypothetical protein VOLCADRAFT_79384 [Volvox carteri f.
nagariensis]
gi|300268016|gb|EFJ52198.1| hypothetical protein VOLCADRAFT_79384 [Volvox carteri f.
nagariensis]
Length = 141
Score = 43.1 bits (100), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 27/34 (79%)
Query: 159 QYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
QY+ +MNAIFSAQR+ V +D+ L ++S+FLQQ
Sbjct: 2 QYIPVMNAIFSAQRAEVLLDAVVLATEDSSFLQQ 35
>gi|224106784|ref|XP_002333630.1| predicted protein [Populus trichocarpa]
gi|222837853|gb|EEE76218.1| predicted protein [Populus trichocarpa]
Length = 125
Score = 43.1 bits (100), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 155 DGPEQYVAIMNAIFSAQRSMVPIDSC 180
DGPEQ+VA+MNA F S+VPIDSC
Sbjct: 33 DGPEQHVAVMNATFCTPCSLVPIDSC 58
>gi|219113725|ref|XP_002186446.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209583296|gb|ACI65916.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 358
Score = 42.7 bits (99), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 145 PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQ----NSAFLQQ 192
PRI +Q S D Y A MN F+A + + +D C+L A+ +SAFL+Q
Sbjct: 206 PRIFLIQASDDRSRDYNAFMNCAFAAVKQSIVVDGCFLSAKGNHSSSAFLEQ 257
>gi|195447228|ref|XP_002071121.1| GK25630 [Drosophila willistoni]
gi|194167206|gb|EDW82107.1| GK25630 [Drosophila willistoni]
Length = 310
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 97 LEEFMNKDEQLGKQEPEGR-IACSLLSGSLSMALCYIQRVFRS---GL-----LHPQPRI 147
+ E M D Q + + SLL+G + ALCYIQR R GL L + R+
Sbjct: 134 IAELMRSDAQKVNYNSNAQNTSTSLLAGGIGKALCYIQRRRREITRGLAKGVQLRIEARV 193
Query: 148 LCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYL 182
L + + G Q + M+ A+ S V +D C L
Sbjct: 194 LIVTATDPGSNQVINYMHMFNGAKSSRVALDVCIL 228
>gi|405968700|gb|EKC33746.1| Poly [ADP-ribose] polymerase 4 [Crassostrea gigas]
Length = 3371
Score = 40.4 bits (93), Expect = 0.49, Method: Composition-based stats.
Identities = 45/200 (22%), Positives = 84/200 (42%), Gaps = 54/200 (27%)
Query: 14 SLVVVLLDTNPFFW---------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
S ++++LDTNP +W + ++ ++ L V+ F ++ L +N N++ +IA
Sbjct: 2844 SQLIIILDTNPVWWGHKPSSHTKAQQKMTLTECLNSVMVFAHSHLMMNHSNKLAIIAAHS 2903
Query: 65 NSCDYVYDS--------SSTGNQSVGNGRMPSLCATLLQNLEEFMNK--DEQL-GKQEPE 113
+ ++Y S + GN L + + ++E + D + G+ P+
Sbjct: 2904 DQSVFLYPKNDPTVHVISEADEVTEGNDGKYELFNQVDKQIKEGIKNLIDNCMNGQLYPD 2963
Query: 114 GRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRS 173
SL++G+L+MALC QR H + IL + R
Sbjct: 2964 -----SLVAGALAMALC--QRS------HEEAGIL---------------------SSRI 2989
Query: 174 MVPIDSCYLGAQNSAFLQQC 193
+V ID+C L ++ Q C
Sbjct: 2990 LVVIDACVLDNESGLLQQAC 3009
>gi|119618834|gb|EAW98428.1| general transcription factor IIH, polypeptide 3, 34kDa, isoform
CRA_c [Homo sapiens]
Length = 169
Score = 40.0 bits (92), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 146 RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
RIL ++ + D QY+ MN IF+AQ+ + ID+C L + +S LQQ
Sbjct: 14 RILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQ 59
>gi|149236047|ref|XP_001523901.1| hypothetical protein LELG_04714 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452277|gb|EDK46533.1| hypothetical protein LELG_04714 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 444
Score = 39.7 bits (91), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 146 RILCLQGSP-DGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
RIL + S D Y+ +MN IF+AQ+ V ID LG +S++LQQ
Sbjct: 259 RILIVTASDNDNHLNYIPLMNCIFTAQKLKVSIDVAKLGTTDSSYLQQA 307
Score = 39.7 bits (91), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 10 SDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
+DD +L+ ++LD +P W + + S +L FLN L LN NQV IA+
Sbjct: 20 NDDPTLLTIVLDVSPLGWYNLRHTTSLENITKSLLVFLNGHLALNNSNQVAFIASSSTGS 79
Query: 68 DYVY 71
++Y
Sbjct: 80 KFLY 83
>gi|224006638|ref|XP_002292279.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220971921|gb|EED90254.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 409
Score = 39.7 bits (91), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 100 FMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQ 159
N L +++ EG IA L+ GS S + LL PR L +Q S D
Sbjct: 208 LANSSSMLQRKDDEGVIA--LMGGSGSSNFKQQELQHSKSLL--SPRALIIQSSSDRTSD 263
Query: 160 YVAIMNAIFSAQRSMVPIDSCYL------GAQNSAFLQQ 192
Y A+MN F+A + + ID C++ A++S +L+Q
Sbjct: 264 YNALMNCAFAANKQNIVIDGCFIPSGMKDDAKSSPYLEQ 302
>gi|453081361|gb|EMF09410.1| transcription factor Tfb4 [Mycosphaerella populorum SO2202]
Length = 287
Score = 39.7 bits (91), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 146 RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
R+L L S D QY+ IMN+IF+ QR +PID L A ++ FLQQ
Sbjct: 114 RLLILSVSGDLANQYIPIMNSIFACQRLSIPIDILKL-AGDTVFLQQ 159
>gi|428673526|ref|NP_001258797.1| general transcription factor IIH subunit 3 isoform d [Homo sapiens]
Length = 162
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 146 RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
RIL ++ + D QY+ MN IF+AQ+ + ID+C L + +S LQQ
Sbjct: 14 RILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQ 59
>gi|441630273|ref|XP_004089524.1| PREDICTED: general transcription factor IIH subunit 3 isoform 4
[Nomascus leucogenys]
Length = 162
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 146 RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
RIL ++ + D QY+ MN IF+AQ+ + ID+C L + +S LQQ
Sbjct: 14 RILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQ 59
>gi|395755950|ref|XP_003780047.1| PREDICTED: general transcription factor IIH subunit 3-like,
partial [Pongo abelii]
Length = 61
Score = 38.9 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 5/57 (8%)
Query: 11 DDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIAT 62
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 1 DELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIAS 57
>gi|449524543|ref|XP_004169281.1| PREDICTED: general transcription factor IIH subunit 3-like, partial
[Cucumis sativus]
Length = 121
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/18 (83%), Positives = 17/18 (94%)
Query: 175 VPIDSCYLGAQNSAFLQQ 192
VPIDSCY+G+ NSAFLQQ
Sbjct: 1 VPIDSCYIGSHNSAFLQQ 18
>gi|398349137|ref|ZP_10533840.1| DNA gyrase subunit B [Leptospira broomii str. 5399]
Length = 637
Score = 36.6 bits (83), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 20 LDTNPFFWSSSSLSFSQFLTHVLAFLNAILTL--NQLNQVVVIATGYNSC--DYVYDSSS 75
++ + F + +SF ++L L+ + N+ + V IA Y+ + ++ ++
Sbjct: 214 IEEHDFLFDGGIVSFVEYLNENKHPLHKTIHFERNKDDVVAEIAIQYSDTYSENIFCFTN 273
Query: 76 TGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSG 123
N S+G + A L + L +F+ KD+QL K++P G L G
Sbjct: 274 NINNSLGGTHLEGFRAALTRTLNDFLKKDQQLVKKQPTGLSGDDLKEG 321
>gi|398344114|ref|ZP_10528817.1| DNA gyrase subunit B [Leptospira inadai serovar Lyme str. 10]
Length = 637
Score = 36.6 bits (83), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 20 LDTNPFFWSSSSLSFSQFLTHVLAFLNAILTL--NQLNQVVVIATGYNSC--DYVYDSSS 75
++ + F + +SF ++L L+ + N+ + V IA Y+ + ++ ++
Sbjct: 214 IEEHDFLFDGGIVSFVEYLNENKHPLHKTIHFERNKDDVVAEIAIQYSDTYSENIFCFTN 273
Query: 76 TGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSG 123
N S+G + A L + L +F+ KD+QL K++P G L G
Sbjct: 274 NINNSLGGTHLEGFRAALTRTLNDFLKKDQQLVKKQPTGLSGDDLKEG 321
>gi|340502299|gb|EGR29003.1| kinesin-like protein kif19, putative [Ichthyophthirius multifiliis]
Length = 656
Score = 36.2 bits (82), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 60 IATGYNSCDYVYDSSSTGNQS--VGNGRMPSLCATLLQNLEEFMNKD 104
+A GYN+ + Y + TG +GN +P LC +Q++ +F+ KD
Sbjct: 115 VAQGYNATVFAYGPTGTGKTHTMLGNQEIPGLCTLTIQDMFQFIRKD 161
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,270,701,089
Number of Sequences: 23463169
Number of extensions: 125360781
Number of successful extensions: 263682
Number of sequences better than 100.0: 351
Number of HSP's better than 100.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 262735
Number of HSP's gapped (non-prelim): 481
length of query: 219
length of database: 8,064,228,071
effective HSP length: 137
effective length of query: 82
effective length of database: 9,144,741,214
effective search space: 749868779548
effective search space used: 749868779548
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 74 (33.1 bits)