BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027721
(219 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OBV|A Chain A, Crystal Structure Of The Human S-adenosylmethionine
Synthetase 1 In Complex With The Product
Length = 384
Score = 30.0 bits (66), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 15/74 (20%)
Query: 78 NQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACS--------LLSGSL-SMA 128
++SVG G +C + + D L KQ+P ++AC LL G + SMA
Sbjct: 11 SESVGEGHPDKICDQISDAV-----LDAHL-KQDPNAKVACETVCKTGMVLLCGEITSMA 64
Query: 129 LCYIQRVFRSGLLH 142
+ QRV R + H
Sbjct: 65 MVDYQRVVRDTIKH 78
>pdb|1QM4|A Chain A, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1QM4|B Chain B, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1O90|A Chain A, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1O90|B Chain B, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1O92|A Chain A, Methionine Adenosyltransferase Complexed With Adp And A
L-Methionine Analogous
pdb|1O92|B Chain B, Methionine Adenosyltransferase Complexed With Adp And A
L-Methionine Analogous
pdb|1O93|A Chain A, Methionine Adenosyltransferase Complexed With Atp And A
L-Methionine Analogous
pdb|1O93|B Chain B, Methionine Adenosyltransferase Complexed With Atp And A
L-Methionine Analogous
pdb|1O9T|B Chain B, Methionine Adenosyltransferase Complexed With Both
Substrates Atp And Methionine
pdb|1O9T|A Chain A, Methionine Adenosyltransferase Complexed With Both
Substrates Atp And Methionine
Length = 396
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 15/74 (20%)
Query: 78 NQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACS--------LLSGSL-SMA 128
++SVG G +C + + D L KQ+P ++AC LL G + SMA
Sbjct: 23 SESVGEGHPDKICDQISDAV-----LDAHL-KQDPNAKVACETVCKTGMVLLCGEITSMA 76
Query: 129 LCYIQRVFRSGLLH 142
+ QRV R + H
Sbjct: 77 MIDYQRVVRDTIKH 90
>pdb|3S9D|A Chain A, Binary Complex Between Ifna2 And Ifnar2
pdb|3S9D|C Chain C, Binary Complex Between Ifna2 And Ifnar2
Length = 168
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 28/66 (42%)
Query: 39 THVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLE 98
TH L ++ L Q+ ++ + + + D+ + GNQ +P L A + Q
Sbjct: 9 THSLGSRRTLMLLAQMRRISLFSCLKDRHDFGFPQEEFGNQFQKAETIPVLAAMIAQIFN 68
Query: 99 EFMNKD 104
F KD
Sbjct: 69 LFSTKD 74
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 58 VVIATGYNS---CDYVYDSSSTGNQSVGNGRMPSLCATLLQNLE---EFMNKDEQLGKQE 111
++ AT NS C+++ + + NQ+ GR P AT+L + F+ + LG ++
Sbjct: 239 LIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARD 298
Query: 112 PEGR 115
EGR
Sbjct: 299 SEGR 302
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 58 VVIATGYNS---CDYVYDSSSTGNQSVGNGRMPSLCATLLQNLE---EFMNKDEQLGKQE 111
++ AT NS C+++ + + NQ+ GR P AT+L + F+ + LG ++
Sbjct: 239 LIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARD 298
Query: 112 PEGR 115
EGR
Sbjct: 299 SEGR 302
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 58 VVIATGYNS---CDYVYDSSSTGNQSVGNGRMPSLCATLLQNLE---EFMNKDEQLGKQE 111
++ AT NS C+++ + + NQ+ GR P AT+L + F+ + LG ++
Sbjct: 239 LIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARD 298
Query: 112 PEGR 115
EGR
Sbjct: 299 SEGR 302
>pdb|2B5L|C Chain C, Crystal Structure Of Ddb1 In Complex With Simian Virus 5
V Protein
pdb|2B5L|D Chain D, Crystal Structure Of Ddb1 In Complex With Simian Virus 5
V Protein
pdb|2HYE|B Chain B, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 222
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 52 NQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEE 99
+++N++ I TG N+ +Y TG S+G +P LL N E
Sbjct: 11 DEINKL--IETGLNTVEYFTSQQVTGTSSLGKNTIPPGVTGLLTNAAE 56
>pdb|3D8U|A Chain A, The Crystal Structure Of A Purr Family Transcriptional
Regulator From Vibrio Parahaemolyticus Rimd 2210633
pdb|3D8U|B Chain B, The Crystal Structure Of A Purr Family Transcriptional
Regulator From Vibrio Parahaemolyticus Rimd 2210633
Length = 275
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 22/130 (16%)
Query: 59 VIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNL---EEFMNKDE----QLGKQE 111
+I G+ + ++ + GN S ++ + ++N + F+ E QLG
Sbjct: 115 LIEQGFKNVGFI---GARGNHSTLQRQLHGWQSAXIENYLTPDHFLTTHEAPSSQLG--- 168
Query: 112 PEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRIL---------CLQGSPDGPEQYVA 162
EG L SL+ +C + + L R+L CL+GS G Y +
Sbjct: 169 AEGLAKLLLRDSSLNALVCSHEEIAIGALFECHRRVLKVPTDIAIICLEGSSXGEHAYPS 228
Query: 163 IMNAIFSAQR 172
+ +A F +R
Sbjct: 229 LTSAEFDYER 238
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,321,689
Number of Sequences: 62578
Number of extensions: 194151
Number of successful extensions: 339
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 337
Number of HSP's gapped (non-prelim): 9
length of query: 219
length of database: 14,973,337
effective HSP length: 95
effective length of query: 124
effective length of database: 9,028,427
effective search space: 1119524948
effective search space used: 1119524948
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)