BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027721
(219 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q561R7|TF2H3_RAT General transcription factor IIH subunit 3 OS=Rattus norvegicus
GN=Gtf2h3 PE=2 SV=1
Length = 309
Score = 87.8 bits (216), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 104/210 (49%), Gaps = 32/210 (15%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ NA L +N+ NQ+ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCMDAVMVLANAHLFMNRSNQLAVIASHI 64
Query: 65 NSCDYVY-------------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDE 105
++Y D + +G++ + + + + +++ M K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNALPDCNPSGSKDGKYELLTAANEVIAEEIKDLMTKSD 124
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAI 163
G+ +LL+GSL+ ALCYI R ++ + + RIL ++ + D QY+
Sbjct: 125 IKGQHTE------TLLAGSLAKALCYIHRASKAVKDNQEMKSRILVIKAAEDSALQYMNF 178
Query: 164 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
MN IF+AQ+ + ID+C L + + Q C
Sbjct: 179 MNVIFAAQKQNILIDACVLDSDSGLLQQAC 208
>sp|Q86IB5|TF2H3_DICDI General transcription factor IIH subunit 3 OS=Dictyostelium
discoideum GN=gtf2h3 PE=3 SV=1
Length = 372
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 91/174 (52%), Gaps = 16/174 (9%)
Query: 32 LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVG--------- 82
+ F++FL H + F+NA L LNQ NQ+ +I + +V+ S+
Sbjct: 90 IGFNKFLEHFMVFINAYLMLNQENQLAIICSKIGESSFVFPQSNIDQYQQEQQELEQRQL 149
Query: 83 --NGRM-PSLCATLL-QNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRS 138
NG + P+ T+ Q L + D ++ + + I S S S+S+ALCYI R+ R
Sbjct: 150 NENGELLPTPNKTIQGQILAKLQKLDLEIKHDQTD--ILSSSFSASMSIALCYINRIKRE 207
Query: 139 GLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
+PRIL SPD QY+++MN IFS+Q+ +P+DSC L +S FLQQ
Sbjct: 208 TPT-IKPRILVFNISPDVSSQYISVMNCIFSSQKQSIPVDSCILSQSDSTFLQQ 260
>sp|Q8VD76|TF2H3_MOUSE General transcription factor IIH subunit 3 OS=Mus musculus
GN=Gtf2h3 PE=1 SV=1
Length = 309
Score = 85.1 bits (209), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 103/210 (49%), Gaps = 32/210 (15%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ NQ+ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCMDAVMVLANSHLFMNRSNQLAVIASHI 64
Query: 65 NSCDYVY-------------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDE 105
+Y D + +G++ + + + +++ M K +
Sbjct: 65 QESRLLYPGKNGGLGDFFGDPGNALPDCNPSGSKDGKYELLTVANEVIAEEIKDLMTKSD 124
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAI 163
G+ +LL+GSL+ ALCYI RV ++ + + RIL ++ + D QY+
Sbjct: 125 IKGQHTE------TLLAGSLAKALCYIHRVNKAVKDNQEMKSRILVIKAAEDSALQYMNF 178
Query: 164 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
MN IF+AQ+ + ID+C L + + Q C
Sbjct: 179 MNVIFAAQKQNILIDACVLDSDSGLLQQAC 208
>sp|Q05B56|TF2H3_BOVIN General transcription factor IIH subunit 3 OS=Bos taurus GN=GTF2H3
PE=2 SV=1
Length = 309
Score = 85.1 bits (209), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 104/207 (50%), Gaps = 26/207 (12%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVYDSSS---------TGNQSV-------GNGRMPSLCATLLQNLEEFMNKDEQLG 108
++Y + GN S +G+ L A EE + +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPSSEFTPSGSKDGKYELLTAANEVIAEEI---KDLMT 121
Query: 109 KQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNA 166
K + EG+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+ MN
Sbjct: 122 KSDIEGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNV 181
Query: 167 IFSAQRSMVPIDSCYLGAQNSAFLQQC 193
IF+AQ+ + ID+C L + + Q C
Sbjct: 182 IFAAQKQNILIDACVLDSDSGLLQQAC 208
>sp|Q13889|TF2H3_HUMAN General transcription factor IIH subunit 3 OS=Homo sapiens
GN=GTF2H3 PE=1 SV=2
Length = 308
Score = 81.6 bits (200), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 103/209 (49%), Gaps = 31/209 (14%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVYDSSS------------------TGNQSVGNGRMPSLCATLLQNLEEFMNKDEQ 106
++Y + +G++ + S +++ +++ M K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDI 124
Query: 107 LGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIM 164
G+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+ M
Sbjct: 125 KGQHTE------TLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFM 178
Query: 165 NAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193
N IF+AQ+ + ID+C L + + Q C
Sbjct: 179 NVIFAAQKQNILIDACVLDSDSGLLQQAC 207
>sp|Q6FWA7|TFB4_CANGA RNA polymerase II transcription factor B subunit 4 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=TFB4 PE=3 SV=1
Length = 335
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 100/207 (48%), Gaps = 26/207 (12%)
Query: 10 SDDV-SLVVVLLDTNPFFW------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIAT 62
++D+ SL+ V+LD +P W S S + L ++ FLN+ L N NQV VIA
Sbjct: 19 TEDIPSLLTVVLDISPRLWAEFDHRSGEKQSVTTVLKSLIVFLNSHLAFNSANQVAVIAA 78
Query: 63 GYNSCDYVY-DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGK------QEPEGR 115
Y+Y SS T Q+ GN + S+ ++ + F N DE L + Q E
Sbjct: 79 FSQGIQYLYPRSSDTSEQNAGNSKDLSIISSHM--YRRFRNVDETLIEEFYKLYQREESL 136
Query: 116 I----ACSLLSGSLSMALCYIQRV---FRSGLLHPQPRILCLQGSPDGPE--QYVAIMNA 166
I S LSG+++ AL Y R+ F S L + ++ S + E QY+ IMN
Sbjct: 137 IDKPVQKSTLSGAMAAALTYTNRLTKEFESISLRSRLLVITCGSSREKDEIFQYIPIMNC 196
Query: 167 IFSAQRSMVPIDSCYLGA-QNSAFLQQ 192
IFSA + PID +G + S FLQQ
Sbjct: 197 IFSATKLKCPIDVIKIGGNKQSTFLQQ 223
>sp|O74366|TFB4_SCHPO RNA polymerase II transcription factor B subunit 4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tfb4 PE=1 SV=1
Length = 297
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 96/195 (49%), Gaps = 24/195 (12%)
Query: 10 SDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
+D SL+VV+LD NP W S + S+ L + FLNA L + N+V V+A+ +
Sbjct: 20 NDTPSLLVVILDANPASWYSLSKKVPVSKVLADITVFLNAHLAFHHDNRVAVLASHSDKV 79
Query: 68 DYVYDSSSTGNQSVGN----------GRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIA 117
+Y+Y S + Q V + + +L ++ M+ +++ ++
Sbjct: 80 EYLYPSIAP-EQKVAEVDPTKEANTYRKFREVDDLVLSGMKRLMSSTDKVSRK------- 131
Query: 118 CSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPI 177
+++SG+LS AL YI +V L + RIL + D QY+ MN IF AQ+ +PI
Sbjct: 132 -TMISGALSRALAYINQVQNKNTL--RSRILIFSLTGDVALQYIPTMNCIFCAQKKNIPI 188
Query: 178 DSCYLGAQNSAFLQQ 192
+ C + + FL+Q
Sbjct: 189 NVCNIEG-GTLFLEQ 202
>sp|Q12004|TFB4_YEAST RNA polymerase II transcription factor B subunit 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TFB4 PE=1
SV=1
Length = 338
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 100/215 (46%), Gaps = 24/215 (11%)
Query: 2 ASAPSKLYSDDVSLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLN 55
A + ++ + SL+ V+++ P W++ S + L ++ FLNA L N N
Sbjct: 12 ARSRKQVTEESPSLLTVIIEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSAN 71
Query: 56 QVVVIATGYNSCDYVY-DSSSTGNQSVGNGRMPSLCATLLQNL-EEFMNKDE-------- 105
+V VIA Y+Y +S+S S + S + ++ F N DE
Sbjct: 72 KVAVIAAYSQGIKYLYPESTSALKASESENKTRSDLKIINSDMYRRFRNVDETLVEEIYK 131
Query: 106 --QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHP-QPRILCLQ----GSPDGPE 158
+L K++ E S L+G++S L Y+ R+ + + + R+L L S D
Sbjct: 132 LFELEKKQIEQNSQRSTLAGAMSAGLTYVNRISKESVTTSLKSRLLVLTCGSGSSKDEIF 191
Query: 159 QYVAIMNAIFSAQRSMVPIDSCYL-GAQNSAFLQQ 192
QY+ IMN IFSA + PID + G++ S FLQQ
Sbjct: 192 QYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQ 226
>sp|Q75B93|TFB4_ASHGO RNA polymerase II transcription factor B subunit 4 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=TFB4 PE=3 SV=1
Length = 341
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 90/211 (42%), Gaps = 25/211 (11%)
Query: 7 KLYSDDVSLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
+L + SL+ +++DTNP W+ Q L + FLNA L+ N NQV VI
Sbjct: 17 QLVEETPSLLTLVIDTNPKLWAEFDREVGKKGQLMQVLKSTIVFLNAHLSFNNSNQVSVI 76
Query: 61 ATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDE-----------QLGK 109
A Y+Y + S + F N DE Q K
Sbjct: 77 AACSRGIKYLYPQADDKEGSTKKKKSEDRSIINRNMYRGFRNVDEAVVEELYRVFQQESK 136
Query: 110 QEPEG--RIACSLLSGSLSMALCYIQRV-FRSGLLHPQPRILCL----QGSPDGPEQYVA 162
Q +G + S LSG++S L YI R+ + + + R+L + S D QY+
Sbjct: 137 QLEDGVPQPFRSTLSGAMSAGLTYINRITHETEGVSLKSRLLVITCGSSASKDEVFQYIP 196
Query: 163 IMNAIFSAQRSMVPIDSCYLGA-QNSAFLQQ 192
IMN IFSA + PID +G + S FLQQ
Sbjct: 197 IMNCIFSATKMKCPIDVVKVGGVKESTFLQQ 227
>sp|Q6BL86|TFB4_DEBHA RNA polymerase II transcription factor B subunit 4 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=TFB4 PE=3 SV=2
Length = 387
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 98/247 (39%), Gaps = 73/247 (29%)
Query: 15 LVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY- 71
L+ V+LD P W + ++ + +L FLNA L+LN NQV IA+ ++Y
Sbjct: 24 LLTVVLDVTPQSWYKIRNQITIQEVAKSLLVFLNAHLSLNNSNQVAFIASTPQGSKFLYP 83
Query: 72 ---------DSSSTGNQS-----------VGNG---RMPSLCATLLQNLEE-FMNKDEQL 107
S G S VG+G + + +L+ L E F + + +
Sbjct: 84 NPEKNYDEVSSKKNGEGSNLNKADSTSSLVGDGMYRQFRIVDEAVLEKLNEIFADISQNV 143
Query: 108 GKQEPEGRIACSLLSGSLSMALCYIQRVFR------------------------------ 137
K + S LSG+LS+AL Y R+
Sbjct: 144 DKSR-----SNSTLSGALSLALTYTNRMLNLDSSISTTTASAINTTTNANSNKTSSSGTT 198
Query: 138 -----------SGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQN 186
+ L + RIL + + D +Y+ IMN F+AQ+ VPID LG ++
Sbjct: 199 SNSMSTGGTNTTSLTSMRSRILIVSSNDDNDIKYIPIMNTTFAAQKMKVPIDVAKLGERD 258
Query: 187 SAFLQQC 193
S++LQQ
Sbjct: 259 SSYLQQA 265
>sp|Q6CVX9|TFB4_KLULA RNA polymerase II transcription factor B subunit 4 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=TFB4 PE=3 SV=1
Length = 337
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 94/213 (44%), Gaps = 40/213 (18%)
Query: 11 DDVSLVVVLLDTNPFFW--------------SSSSLSFSQFLTHVLAFLNAILTLNQLNQ 56
D SL+ V++DT+ W SS + L ++ FLNA L N NQ
Sbjct: 21 DTPSLLTVVVDTSIHSWVQLTKQQSGSGSEGSSGEKQLIEALKSIVVFLNAHLAFNSGNQ 80
Query: 57 VVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDE-------QLGK 109
V +IA Y+Y S+ + PS+ F N DE +L K
Sbjct: 81 VCLIAAHSEGMKYLYPSADSK---------PSMSMVSSDMYRGFRNVDEIVVEQWYRLFK 131
Query: 110 QEPEGRIA----CSLLSGSLSMALCYIQRVFRSGL-LHPQPRILCLQ-GSPDGPE---QY 160
+E EG+ + S LSG++S AL Y+ R+ + + R+L + G+ G + QY
Sbjct: 132 EELEGQESKVSMKSSLSGAMSSALTYVNRILKENENTSLRSRLLVITCGTSQGKDEIFQY 191
Query: 161 VAIMNAIFSAQRSMVPIDSCYLGAQ-NSAFLQQ 192
+ IMN IFSA + ID +G S FLQQ
Sbjct: 192 IPIMNCIFSATKMKCSIDVVKIGGGIESTFLQQ 224
>sp|Q6CD24|TFB4_YARLI RNA polymerase II transcription factor B subunit 4 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=TFB4 PE=3 SV=1
Length = 340
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 26/207 (12%)
Query: 11 DDVSLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
D SL+ +++D + W S +S S+ + +L F+NA L L+ N V VI +
Sbjct: 21 DTPSLLSIIIDAHVPSWEEIKSQISISEAVASILVFINAHLALHNSNSVNVIGYNASGAR 80
Query: 69 YVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQ------------------ 110
+Y S G +S + ++ + KD + +Q
Sbjct: 81 ILYPPKS-GVESTRSKEREERSESVSDGEQAPSKKDHSMYRQFKTVDEVVQTELWNMLNH 139
Query: 111 ---EPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQ-GSPDGPEQYVAIMNA 166
E + S +SG+LS+AL +I + + RIL L G + QY+ MN
Sbjct: 140 TNYVEEEKQHNSAISGALSLALGFINKHVFVDESRMRARILLLTVGHKNETIQYIPTMNC 199
Query: 167 IFSAQRSMVPIDSCYLG-AQNSAFLQQ 192
IF+AQ+ +P+D C LG + FLQQ
Sbjct: 200 IFAAQKLKIPVDVCKLGPGSDQVFLQQ 226
>sp|Q3ACX1|RNY_CARHZ Ribonuclease Y OS=Carboxydothermus hydrogenoformans (strain Z-2901
/ DSM 6008) GN=rny PE=3 SV=1
Length = 513
Score = 34.3 bits (77), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 85 RMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ 144
R+ S TL + +E F K+EQL K+E E L +L L ++R+ SGL +
Sbjct: 90 RLLSKEETLDRKIESFERKEEQLAKKEQEIENLRQSLEETLQKELAELERI--SGLSTEE 147
Query: 145 PRILCLQGSPDGPEQYVAIM 164
R L L+ + +Q +A++
Sbjct: 148 ARELLLKQVEEEVQQEMALL 167
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,566,458
Number of Sequences: 539616
Number of extensions: 2948245
Number of successful extensions: 6061
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6022
Number of HSP's gapped (non-prelim): 16
length of query: 219
length of database: 191,569,459
effective HSP length: 113
effective length of query: 106
effective length of database: 130,592,851
effective search space: 13842842206
effective search space used: 13842842206
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)