Query 027721
Match_columns 219
No_of_seqs 109 out of 217
Neff 6.2
Searched_HMMs 29240
Date Tue Mar 26 00:18:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027721.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027721hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x5n_A SPRPN10, 26S proteasome 97.8 0.0012 4.1E-08 54.2 15.3 149 14-193 3-155 (192)
2 4b4t_W RPN10, 26S proteasome r 97.7 0.00087 3E-08 58.4 14.9 148 16-193 6-157 (268)
3 3n2n_F Anthrax toxin receptor 97.0 0.061 2.1E-06 42.0 16.5 162 13-205 7-176 (185)
4 1shu_X Anthrax toxin receptor 97.0 0.085 2.9E-06 41.0 17.5 160 13-205 6-173 (182)
5 3ibs_A Conserved hypothetical 96.8 0.082 2.8E-06 42.4 15.8 141 9-184 7-149 (218)
6 1atz_A VON willebrand factor; 96.5 0.19 6.4E-06 39.7 15.8 149 13-193 5-155 (189)
7 1ijb_A VON willebrand factor; 95.7 0.59 2E-05 37.3 15.5 165 13-205 13-187 (202)
8 2xgg_A Microneme protein 2; A/ 95.6 0.49 1.7E-05 37.0 14.3 152 13-191 17-169 (178)
9 4fx5_A VON willebrand factor t 95.5 0.57 2E-05 43.2 16.1 165 13-206 77-250 (464)
10 1q0p_A Complement factor B; VO 94.9 1.1 3.8E-05 35.6 14.5 174 12-206 14-212 (223)
11 4hqf_A Thrombospondin-related 94.2 1.8 6.3E-05 36.3 14.7 152 13-193 21-177 (281)
12 2b2x_A Integrin alpha-1; compu 93.8 2.2 7.4E-05 34.4 15.2 142 13-184 22-163 (223)
13 2odp_A Complement C2; C3/C5 co 93.1 3.3 0.00011 37.5 15.5 178 11-209 7-209 (509)
14 4hqo_A Sporozoite surface prot 92.9 3.2 0.00011 34.6 14.1 154 13-193 18-174 (266)
15 3hrz_D Complement factor B; se 92.6 4.1 0.00014 38.7 15.8 173 13-206 243-440 (741)
16 3zqk_A VON willebrand factor; 92.3 3.5 0.00012 32.6 13.1 160 12-206 20-186 (199)
17 1pt6_A Integrin alpha-1; cell 92.2 3.6 0.00012 32.7 15.1 142 13-184 7-148 (213)
18 1n3y_A Integrin alpha-X; alpha 92.0 0.63 2.2E-05 36.5 8.0 152 12-193 8-164 (198)
19 1mf7_A Integrin alpha M; cell 91.6 0.33 1.1E-05 38.3 6.0 149 13-193 5-160 (194)
20 1rrk_A Complement factor B; BB 90.6 7.9 0.00027 34.7 14.9 172 15-207 3-199 (497)
21 1jey_A KU70; double-strand DNA 88.4 17 0.00057 34.5 15.8 163 14-193 36-220 (609)
22 1v7p_C Integrin alpha-2; snake 88.3 7.9 0.00027 30.3 16.8 141 13-183 6-146 (200)
23 1jey_B KU80; double-strand DNA 85.0 25 0.00085 32.8 15.8 149 14-183 8-168 (565)
24 2x31_A Magnesium-chelatase 60 84.5 11 0.00036 29.1 10.4 148 12-193 4-160 (189)
25 1mjn_A Integrin alpha-L; rossm 81.5 4.9 0.00017 31.2 7.2 140 15-193 4-150 (179)
26 3k6s_A Integrin alpha-X; cell 73.2 3.1 0.00011 42.4 4.7 151 13-193 130-285 (1095)
27 3rag_A Uncharacterized protein 66.5 14 0.00047 31.4 6.6 97 11-138 132-231 (242)
28 1pcx_A Protein transport prote 23.5 2E+02 0.0068 28.2 7.6 60 117-184 304-388 (810)
No 1
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=97.76 E-value=0.0012 Score=54.25 Aligned_cols=149 Identities=17% Similarity=0.162 Sum_probs=100.8
Q ss_pred CeEEEEEeCCcccccc--CcccHHHHHHHHHHHHHHHHhcCCCCcEEEEEEcCCcceEEecCCCCCCCCCCCCCchhHHH
Q 027721 14 SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCA 91 (219)
Q Consensus 14 slLviIlD~np~~W~~--~~~~l~~~l~~llvFlNahL~~~~~N~vaVia~~~~~~~~LYp~~~~~~~~~~~~~~~~~~~ 91 (219)
.-++++||++..=-.. .+--|......+..|+++++..+...++.+|+.....++.+-|....
T Consensus 3 e~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~~~plT~d--------------- 67 (192)
T 2x5n_A 3 EATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTRD--------------- 67 (192)
T ss_dssp EEEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCEEEEEESC---------------
T ss_pred eEEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEEecCCCCC---------------
Confidence 3589999998765544 23347778888899999999999999999999977667767554322
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCccccccchhhHHHHHHHHHhhhhccCCCCCCceEEEEecCCCCchhhhHHHHHHHHhh
Q 027721 92 TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQ 171 (219)
Q Consensus 92 ~v~~~l~~li~~~~~~~~~~~~~~~~~s~LagALs~ALCyINR~~~~~~~~~~~RILvis~S~d~~~QYi~lMN~iFaAq 171 (219)
.+.+.+++.+-. . ...+.+..||.+|.-.+.+.. ...-+.||+|+..++... .--.+...+-.++
T Consensus 68 --~~~i~~~L~~l~---~------~g~t~l~~aL~~A~~~l~~~~---~~~~~~riiil~~~~~~~-~~~~~~~~a~~lk 132 (192)
T 2x5n_A 68 --YGKFLSAMHDLP---V------RGNAKFGDGIQIAQLALKHRE---NKIQRQRIVAFVGSPIVE-DEKNLIRLAKRMK 132 (192)
T ss_dssp --HHHHHHHHTTCC---C------CSCCCHHHHHHHHHHHHHTCS---CTTSEEEEEEEECSCCSS-CHHHHHHHHHHHH
T ss_pred --HHHHHHHHHcCC---C------CCCchHHHHHHHHHHHHHhcc---ccCCCceEEEEEECCCCC-CchhHHHHHHHHH
Confidence 344555555411 1 125678888988875554421 123466887777654321 1234567788889
Q ss_pred hCCceeeEeeeCCCC--chhhhhh
Q 027721 172 RSMVPIDSCYLGAQN--SAFLQQC 193 (219)
Q Consensus 172 K~~V~IDvc~L~~~~--s~fLQQA 193 (219)
|.+|.|++..+|.++ .. ||+-
T Consensus 133 ~~gi~v~~Ig~G~~~~~~~-l~~l 155 (192)
T 2x5n_A 133 KNNVAIDIIHIGELQNESA-LQHF 155 (192)
T ss_dssp HTTEEEEEEEESCC---CH-HHHH
T ss_pred HCCCEEEEEEeCCCCccHH-HHHH
Confidence 999999999998642 24 7764
No 2
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.75 E-value=0.00087 Score=58.39 Aligned_cols=148 Identities=14% Similarity=0.148 Sum_probs=104.4
Q ss_pred EEEEEeCCccccccC--cccHHHHHHHHHHHHHHHHhcCCCCcEEEEEEcCCcceEEecCCCCCCCCCCCCCchhHHHHH
Q 027721 16 VVVLLDTNPFFWSSS--SLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATL 93 (219)
Q Consensus 16 LviIlD~np~~W~~~--~~~l~~~l~~llvFlNahL~~~~~N~vaVia~~~~~~~~LYp~~~~~~~~~~~~~~~~~~~~v 93 (219)
.+|+||++-.-...+ +.-|...-+++-.|+++..-++..++|.||+........+-| +..+
T Consensus 6 tViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl~p-lT~D---------------- 68 (268)
T 4b4t_W 6 TVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLST-FTAE---------------- 68 (268)
T ss_dssp EEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEEEE-EESC----------------
T ss_pred EEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceeccC-Ccch----------------
Confidence 588999987655442 344778888899999999999999999999986655554433 3222
Q ss_pred HHHHHHHHHhhhhcCCCCCCccccccchhhHHHHHHHHHhhhhccCCCCCCceEEEEecCCCCchhhhHHHHHHHHhhhC
Q 027721 94 LQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRS 173 (219)
Q Consensus 94 ~~~l~~li~~~~~~~~~~~~~~~~~s~LagALs~ALCyINR~~~~~~~~~~~RILvis~S~d~~~QYi~lMN~iFaAqK~ 173 (219)
..++...+..-. . ...+.++.+|.+|.--..+... ..-+.||+|++.|+...+. -.+...+--++|.
T Consensus 69 ~~~il~aL~~l~---~------~G~T~l~~gL~~A~~aLk~~~~---k~~~~rIIlf~ds~~~~~~-~~l~~lak~lkk~ 135 (268)
T 4b4t_W 69 FGKILAGLHDTQ---I------EGKLHMATALQIAQLTLKHRQN---KVQHQRIVAFVCSPISDSR-DELIRLAKTLKKN 135 (268)
T ss_dssp HHHHHHHHTTCC---C------CSCCCHHHHHHHHHHHHHTCSC---TTSEEEEEEEECSCCSSCH-HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcC---c------CCCCChHHHHHHHHHHHHhccc---CCCceEEEEEECCCCCCCH-HHHHHHHHHHHHc
Confidence 344545554321 1 1357799999999877655432 3567899999998854432 2467888999999
Q ss_pred CceeeEeeeCCC--Cchhhhhh
Q 027721 174 MVPIDSCYLGAQ--NSAFLQQC 193 (219)
Q Consensus 174 ~V~IDvc~L~~~--~s~fLQQA 193 (219)
+|.||+..+|.. ....||+-
T Consensus 136 gI~v~vIgFG~~~~n~~kLe~l 157 (268)
T 4b4t_W 136 NVAVDIINFGEIEQNTELLDEF 157 (268)
T ss_dssp TEEEEEEEESSCCSSCCHHHHH
T ss_pred CCEEEEEEeCCCccchHHHHHH
Confidence 999999999842 44566664
No 3
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=97.02 E-value=0.061 Score=41.95 Aligned_cols=162 Identities=8% Similarity=0.007 Sum_probs=98.3
Q ss_pred CCeEEEEEeCCccccccCcccHHHHHHHHHHHHHHHHhcCCCCcEEEEEEcCCcceEEecCCCCCCCCCCCCCchhHHHH
Q 027721 13 VSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCAT 92 (219)
Q Consensus 13 ~slLviIlD~np~~W~~~~~~l~~~l~~llvFlNahL~~~~~N~vaVia~~~~~~~~LYp~~~~~~~~~~~~~~~~~~~~ 92 (219)
+-=++++||++.--... +.+..+.+..++..+ ++..-++.|+..+.. .+.++|-...
T Consensus 7 ~~div~vlD~SgSM~~~----~~~~~~~~~~~~~~~--~~~~~~v~lv~f~~~-~~~~~~l~~~---------------- 63 (185)
T 3n2n_F 7 GFDLYFILDKSGSVLHH----WNEIYYFVEQLAHKF--ISPQLRMSFIVFSTR-GTTLMKLTED---------------- 63 (185)
T ss_dssp EEEEEEEEECSGGGGGG----HHHHHHHHHHHHHHC--CCTTEEEEEEEESSS-EEEEEEEECC----------------
T ss_pred CeeEEEEEeCCCChhhh----HHHHHHHHHHHHHHh--CCCCcEEEEEEEecC-ceEEeccCCC----------------
Confidence 33488999997654332 444455555555554 456779999988655 5666654321
Q ss_pred HHHHHHHHHHhhhhcCCCCCCccccccchhhHHHHHHHHHhhhhccCCCCCCceEEEEecCCCCchhhhHHHHHHHHhhh
Q 027721 93 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQR 172 (219)
Q Consensus 93 v~~~l~~li~~~~~~~~~~~~~~~~~s~LagALs~ALCyINR~~~~~~~~~~~RILvis~S~d~~~QYi~lMN~iFaAqK 172 (219)
.+.+.+.+.+-... .+ ...+.+..||..|+-.+.+..+.. ......|++++-+.+........-...-.+++
T Consensus 64 -~~~~~~~i~~l~~~-~~-----~g~T~~~~al~~a~~~l~~~~~~~-~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~ 135 (185)
T 3n2n_F 64 -REQIRQGLEELQKV-LP-----GGDTYMHEGFERASEQIYYENRQG-YRTASVIIALTDGELHEDLFFYSEREANRSRD 135 (185)
T ss_dssp -HHHHHHHHHHHHTC-CC-----CSCCCHHHHHHHHHHHHHHHHTTC-BCEEEEEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhhh-cC-----CCCccHHHHHHHHHHHHhhccccC-CCCCcEEEEEcCCCCCCCcccchHHHHHHHHH
Confidence 22333333332211 11 135678899999988774432221 22345667777666554443334567778899
Q ss_pred CCceeeEeeeCCCCchhhhhh-------ccccc-hhHHHHH
Q 027721 173 SMVPIDSCYLGAQNSAFLQQC-------MSDRL-LTLLVEY 205 (219)
Q Consensus 173 ~~V~IDvc~L~~~~s~fLQQA-------~~~~~-~~gLlQy 205 (219)
.+|.|-++-+|+.+...|++. +.+.+ .+.|-+.
T Consensus 136 ~gi~i~~igvg~~~~~~L~~iA~~~~~~~~~~~~~~~L~~~ 176 (185)
T 3n2n_F 136 LGAIVYAVGVKDFNETQLARIADSKDHVFPVNDGFQALQGI 176 (185)
T ss_dssp TTEEEEEEECSSCCHHHHTTTSSSGGGEEEHHHHHHHHHHH
T ss_pred CCCEEEEEEeccCCHHHHHHHhCCCCCeEEeccHHHHHHHH
Confidence 999999999986677888887 66665 6555444
No 4
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=96.97 E-value=0.085 Score=41.01 Aligned_cols=160 Identities=9% Similarity=0.014 Sum_probs=93.7
Q ss_pred CCeEEEEEeCCccccccCcccHHHHHHHHHHHHHHHHhcCCCCcEEEEEEcCCcceEEecCCCCCCCCCCCCCchhHHHH
Q 027721 13 VSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCAT 92 (219)
Q Consensus 13 ~slLviIlD~np~~W~~~~~~l~~~l~~llvFlNahL~~~~~N~vaVia~~~~~~~~LYp~~~~~~~~~~~~~~~~~~~~ 92 (219)
+-=++++||++.--... ..+.++.+..++..++ ....++.|+..+.. .+.++|-...
T Consensus 6 ~~dvv~vlD~SgSM~~~----~~~~~~~~~~~~~~~~--~~~~~v~lv~f~~~-~~~~~~~~~~---------------- 62 (182)
T 1shu_X 6 AFDLYFVLDKSGSVANN----WIEIYNFVQQLAERFV--SPEMRLSFIVFSSQ-ATIILPLTGD---------------- 62 (182)
T ss_dssp CEEEEEEEECSGGGGGG----HHHHHHHHHHHHHHCC--CTTEEEEEEEESSS-EEEEEEEECC----------------
T ss_pred ceeEEEEEECCCCcccC----HHHHHHHHHHHHHHhc--CCCceEEEEEeCCC-ceEEECCCCC----------------
Confidence 44589999998754332 1122333333444443 36889999988655 4555553311
Q ss_pred HHHHHHHHHHhhhhcCCCCCCccccccchhhHHHHHHHHHhhhhccCCCCCCceEEEEecCCCCchhhhHHHHHHHHhhh
Q 027721 93 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQR 172 (219)
Q Consensus 93 v~~~l~~li~~~~~~~~~~~~~~~~~s~LagALs~ALCyINR~~~~~~~~~~~RILvis~S~d~~~QYi~lMN~iFaAqK 172 (219)
.+.+.+.+..-..... ...+.+..||..|+-.+.+..+ ......|++++-+.+.....-.....+-.+++
T Consensus 63 -~~~~~~~l~~l~~~~~------~g~T~~~~al~~a~~~l~~~~~---~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~ 132 (182)
T 1shu_X 63 -RGKISKGLEDLKRVSP------VGETYIHEGLKLANEQIQKAGG---LKTSSIIIALTDGKLDGLVPSYAEKEAKISRS 132 (182)
T ss_dssp -HHHHHHHHHHHHTCCC------CSCCCHHHHHHHHHHHHHHHTG---GGSCEEEEEEECCCCCTTHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcccCCC------CCCchHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCcCCCCchhHHHHHHHHHh
Confidence 1223333332111111 1256788999999888876532 23456777788665433322223456667889
Q ss_pred CCceeeEeeeCCCCchhhhhh-------cccc-chhHHHHH
Q 027721 173 SMVPIDSCYLGAQNSAFLQQC-------MSDR-LLTLLVEY 205 (219)
Q Consensus 173 ~~V~IDvc~L~~~~s~fLQQA-------~~~~-~~~gLlQy 205 (219)
.+|.|.++-+|..+...|++. +... +.+.|-+.
T Consensus 133 ~~i~i~~igvg~~~~~~L~~ia~~~~~~~~~~~~~~~L~~~ 173 (182)
T 1shu_X 133 LGASVYCVGVLDFEQAQLERIADSKEQVFPVKGGFQALKGI 173 (182)
T ss_dssp TTCEEEEEECSSCCHHHHHHHSSSGGGEEESSSTTHHHHHH
T ss_pred CCCEEEEEeCCcCCHHHHHHHhCCCCceEEccCCHHHHHHH
Confidence 999999999987777788877 4444 55555443
No 5
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=96.79 E-value=0.082 Score=42.43 Aligned_cols=141 Identities=9% Similarity=0.028 Sum_probs=87.2
Q ss_pred CCCCCCeEEEEEeCCcccccc--CcccHHHHHHHHHHHHHHHHhcCCCCcEEEEEEcCCcceEEecCCCCCCCCCCCCCc
Q 027721 9 YSDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRM 86 (219)
Q Consensus 9 ~~~~~slLviIlD~np~~W~~--~~~~l~~~l~~llvFlNahL~~~~~N~vaVia~~~~~~~~LYp~~~~~~~~~~~~~~ 86 (219)
....+--++++||++.--... .+-.+..+-..+..|++. -...++.||..+.. .+.++|-...
T Consensus 7 ~~~~~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~----~~~~~v~lv~F~~~-~~~~~~~~~~---------- 71 (218)
T 3ibs_A 7 VKRKGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDE----LDNDKVGMIVFAGD-AFTQLPITSD---------- 71 (218)
T ss_dssp ---CCCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHT----CSSCEEEEEEESSS-EEEEEEEESC----------
T ss_pred cccCCCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHh----CCCCeEEEEEECCC-ceEeCCCCCC----------
Confidence 344566799999998775543 223455555555555554 24779999998665 6667763321
Q ss_pred hhHHHHHHHHHHHHHHhhhhcCCCCCCccccccchhhHHHHHHHHHhhhhccCCCCCCceEEEEecCCCCchhhhHHHHH
Q 027721 87 PSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNA 166 (219)
Q Consensus 87 ~~~~~~v~~~l~~li~~~~~~~~~~~~~~~~~s~LagALs~ALCyINR~~~~~~~~~~~RILvis~S~d~~~QYi~lMN~ 166 (219)
.+.+.+++..-...... ...+.+..||..|+..+.+. .....+|++++-+.+... .....
T Consensus 72 -------~~~~~~~l~~l~~~~~~-----~g~T~l~~al~~a~~~l~~~-----~~~~~~ivllTDG~~~~~---~~~~~ 131 (218)
T 3ibs_A 72 -------YISAKMFLESISPSLIS-----KQGTAIGEAINLATRSFTPQ-----EGVGRAIIVITDGENHEG---GAVEA 131 (218)
T ss_dssp -------HHHHHHHHHTCCGGGCC-----SCSCCHHHHHHHHHTTSCSC-----SSCCEEEEEEECCTTCCS---CHHHH
T ss_pred -------HHHHHHHHHhcCcccCC-----CCCCcHHHHHHHHHHHHhhC-----CCCCcEEEEEcCCCCCCC---cHHHH
Confidence 23344444432211111 13567888888888666543 245567888886655444 34566
Q ss_pred HHHhhhCCceeeEeeeCC
Q 027721 167 IFSAQRSMVPIDSCYLGA 184 (219)
Q Consensus 167 iFaAqK~~V~IDvc~L~~ 184 (219)
+=.+++.+|+|.++-+|.
T Consensus 132 ~~~~~~~~i~v~~igig~ 149 (218)
T 3ibs_A 132 AKAAAEKGIQVSVLGVGM 149 (218)
T ss_dssp HHHHHTTTEEEEEEEESC
T ss_pred HHHHHhcCCEEEEEEecC
Confidence 677899999999999985
No 6
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=96.50 E-value=0.19 Score=39.65 Aligned_cols=149 Identities=17% Similarity=0.154 Sum_probs=82.0
Q ss_pred CCeEEEEEeCCccccccCcccHHHHHHHHHHHHHHHHhcCCCCcEEEEEEcCCcceEEecCCCCCCCCCCCCCchhHHHH
Q 027721 13 VSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCAT 92 (219)
Q Consensus 13 ~slLviIlD~np~~W~~~~~~l~~~l~~llvFlNahL~~~~~N~vaVia~~~~~~~~LYp~~~~~~~~~~~~~~~~~~~~ 92 (219)
+-=++++||.+.--... .+..+-+.+..|++..-.-...-+++||..+.. .+..+|-.....
T Consensus 5 ~~div~vlD~SgSm~~~---~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~-~~~~~~l~~~~~-------------- 66 (189)
T 1atz_A 5 PLDVILLLDGSSSFPAS---YFDEMKSFAKAFISKANIGPRLTQVSVLQYGSI-TTIDVPWNVVPE-------------- 66 (189)
T ss_dssp CEEEEEEEECSSSSCHH---HHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSS-EEEEECTTCCCC--------------
T ss_pred ceeEEEEEeCCCCCChh---hHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCc-ceEEEecCCCCC--------------
Confidence 44588999996543221 233333333344443211123457999988544 677777532210
Q ss_pred HHHHHHHHHHhhhhcCCCCCCccccccchhhHHHHHHHHHhhhhccCCCCCCce-EEEEecCCCCchhhhHHHHHHHHhh
Q 027721 93 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPR-ILCLQGSPDGPEQYVAIMNAIFSAQ 171 (219)
Q Consensus 93 v~~~l~~li~~~~~~~~~~~~~~~~~s~LagALs~ALCyINR~~~~~~~~~~~R-ILvis~S~d~~~QYi~lMN~iFaAq 171 (219)
.+.+.+.+..-.. . ...+.+..||..|+-.+...... ...-.+| ++|++-..... .+...+-.++
T Consensus 67 -~~~~~~~i~~l~~---~-----~g~T~~~~aL~~a~~~l~~~~~g-~r~~~~~~vivltdg~~~~----~~~~~~~~~~ 132 (189)
T 1atz_A 67 -KAHLLSLVDVMQR---E-----GGPSQIGDALGFAVRYLTSEMHG-ARPGASKAVVILVTDVSVD----SVDAAADAAR 132 (189)
T ss_dssp -HHHHHHHHHTCCC---C-----CCCCCHHHHHHHHHHHHHSCCTT-CCTTSEEEEEEEECSCCSS----CCHHHHHHHH
T ss_pred -HHHHHHHHHhCcC---C-----CCcchHHHHHHHHHHHHhccccC-CCCCCCcEEEEEeCCCCCc----hHHHHHHHHH
Confidence 3344444443211 1 12567888999888776543211 1122345 55555332211 1356677788
Q ss_pred hCCceeeEeeeCCC-Cchhhhhh
Q 027721 172 RSMVPIDSCYLGAQ-NSAFLQQC 193 (219)
Q Consensus 172 K~~V~IDvc~L~~~-~s~fLQQA 193 (219)
+.+|.|.++-+|.. +...|++.
T Consensus 133 ~~gi~v~~igvG~~~~~~~L~~i 155 (189)
T 1atz_A 133 SNRVTVFPIGIGDRYDAAQLRIL 155 (189)
T ss_dssp HTTEEEEEEEESSSSCHHHHHHH
T ss_pred HCCCEEEEEEcCCcCCHHHHHHH
Confidence 99999999999853 55677776
No 7
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=95.74 E-value=0.59 Score=37.34 Aligned_cols=165 Identities=13% Similarity=0.074 Sum_probs=87.4
Q ss_pred CCeEEEEEeCCccccccCcccHHHHHHHHHHHHHHHHhcCCCCcEEEEEEcCCcceEEecCCCCCCCCCCCCCchhHHHH
Q 027721 13 VSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCAT 92 (219)
Q Consensus 13 ~slLviIlD~np~~W~~~~~~l~~~l~~llvFlNahL~~~~~N~vaVia~~~~~~~~LYp~~~~~~~~~~~~~~~~~~~~ 92 (219)
+-=++++||.+.---. ..|..+-+.+..|++..-.-...-+++||..+.. .+..+|-.... +
T Consensus 13 ~~divfvlD~SgSm~~---~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~-~~~~~~l~~~~-------~------- 74 (202)
T 1ijb_A 13 LLDLVFLLDGSSRLSE---AEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDG-SHAYIGLKDRK-------R------- 74 (202)
T ss_dssp CEEEEEEEECBTTSCH---HHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSS-EEEEECTTCCC-------C-------
T ss_pred cccEEEEEECCCCCCH---HHHHHHHHHHHHHHHhcccCCCceEEEEEEECCC-ceEEEecCCCC-------C-------
Confidence 4568899999653211 1244443334444432211123468999988655 56667643211 0
Q ss_pred HHHHHHHHHHhhhhcCCCCCCccccccchhhHHHHHHHHHhhhhccCCCCCCceEEEEecCCCCchhhhHHHHHHHHhhh
Q 027721 93 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQR 172 (219)
Q Consensus 93 v~~~l~~li~~~~~~~~~~~~~~~~~s~LagALs~ALCyINR~~~~~~~~~~~RILvis~S~d~~~QYi~lMN~iFaAqK 172 (219)
.+.+.+.+..-.. .+ ...+.+..||..|+-.+-+ +...+.....|++++-+.+.....-.+....-.+++
T Consensus 75 -~~~~~~~i~~l~~---~g----g~~T~~~~aL~~a~~~~~~--~~~r~~~~~~iillTDG~~~~~~~~~~~~~a~~l~~ 144 (202)
T 1ijb_A 75 -PSELRRIASQVKY---AG----SQVASTSEVLKYTLFQIFS--KIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLKK 144 (202)
T ss_dssp -HHHHHHHHHTCCC---CC----BSCCCHHHHHHHHHHHTSS--SCSCTTSEEEEEEEECCCCCGGGCTTHHHHHHHHHH
T ss_pred -HHHHHHHHHhCcC---CC----CCcCcHHHHHHHHHHHHhc--cCCCCCCCeEEEEEccCCCCccchHHHHHHHHHHHH
Confidence 2334444443211 11 1135677777777644322 111123344566677655433211134556667888
Q ss_pred CCceeeEeeeCCC-Cchhhhhh---------ccccchhHHHHH
Q 027721 173 SMVPIDSCYLGAQ-NSAFLQQC---------MSDRLLTLLVEY 205 (219)
Q Consensus 173 ~~V~IDvc~L~~~-~s~fLQQA---------~~~~~~~gLlQy 205 (219)
.+|.|-++-+|.. +...|++. +.+++++.|-+.
T Consensus 145 ~gi~i~~igvG~~~~~~~L~~iA~~~~~~~~~~~~~~~~L~~~ 187 (202)
T 1ijb_A 145 KKVIVIPVGIGPHANLKQIRLIEKQAPENKAFVLSSVDELEQQ 187 (202)
T ss_dssp TTEEEEEEEESTTSCHHHHHHHHHHCTTCCCEEESSGGGHHHH
T ss_pred CCCEEEEEecCCcCCHHHHHHHhCCCCcccEEEeCCHHHHHHH
Confidence 9999999999853 55677765 566666665443
No 8
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=95.65 E-value=0.49 Score=37.00 Aligned_cols=152 Identities=11% Similarity=0.032 Sum_probs=79.3
Q ss_pred CCeEEEEEeCCccccccCcccHHHHHHHHHHHHHHHHhcCCCCcEEEEEEcCCcceEEecCCCCCCCCCCCCCchhHHHH
Q 027721 13 VSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCAT 92 (219)
Q Consensus 13 ~slLviIlD~np~~W~~~~~~l~~~l~~llvFlNahL~~~~~N~vaVia~~~~~~~~LYp~~~~~~~~~~~~~~~~~~~~ 92 (219)
+-=++++||.+.---.. .+..+.+.+..|++..-.-...-+++||..+.. .+..+|-..... ..
T Consensus 17 ~~divfvlD~SgSm~~~---~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~-~~~~~~l~~~~~-----~~------- 80 (178)
T 2xgg_A 17 QLDICFLIDSSGSIGIQ---NFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTD-VHLQWDLQSPNA-----VD------- 80 (178)
T ss_dssp CEEEEEEEECCTTTCHH---HHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSS-EEEEECTTSGGG-----SC-------
T ss_pred CeeEEEEEECCCCCCHH---HHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCc-eEEEEeCCCCCc-----cC-------
Confidence 56789999996532111 244444444444444211123468999988655 556666432110 00
Q ss_pred HHHHHHHHHHhhhhcCCCCCCccccccchhhHHHHHHHHHhhhhccCCCCCCceEEEEecCCCCchhhhHHHHHHHHhhh
Q 027721 93 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQR 172 (219)
Q Consensus 93 v~~~l~~li~~~~~~~~~~~~~~~~~s~LagALs~ALCyINR~~~~~~~~~~~RILvis~S~d~~~QYi~lMN~iFaAqK 172 (219)
.+.+.+.+..-.. . ...+.+..||-.|+-.+....+...+.....|++++-+..... ..+-..+-.+++
T Consensus 81 -~~~~~~~i~~l~~---~-----~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~~~--~~~~~~~~~l~~ 149 (178)
T 2xgg_A 81 -KQLAAHAVLDMPY---K-----KGSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESDSD--FRTVRAAKEIRE 149 (178)
T ss_dssp -HHHHHHHHHHCCC---C-----CCCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCCHH--HHHSHHHHHHHH
T ss_pred -HHHHHHHHHhCCC---C-----CCCccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCCCC--ccHHHHHHHHHH
Confidence 2233333333211 1 1256788889888877644321112244556777775544332 124566777889
Q ss_pred CCceeeEeeeCCC-Cchhhh
Q 027721 173 SMVPIDSCYLGAQ-NSAFLQ 191 (219)
Q Consensus 173 ~~V~IDvc~L~~~-~s~fLQ 191 (219)
.+|.|-++-+|.. +..+|+
T Consensus 150 ~gi~v~~igvG~~~~~~~l~ 169 (178)
T 2xgg_A 150 LGGIVTVLAVGHYVAAALVP 169 (178)
T ss_dssp TTCEEEEEECC---------
T ss_pred CCCEEEEEEcCCcCCHHHHh
Confidence 9999999999753 344443
No 9
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=95.48 E-value=0.57 Score=43.19 Aligned_cols=165 Identities=13% Similarity=0.033 Sum_probs=100.0
Q ss_pred CCeEEEEEeCCccccccCcccHHHHHHHHHHHHHHHHhcCCCCcEEEEEEcCCcceEEecCCCCCCCCCCCCCchhHHHH
Q 027721 13 VSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCAT 92 (219)
Q Consensus 13 ~slLviIlD~np~~W~~~~~~l~~~l~~llvFlNahL~~~~~N~vaVia~~~~~~~~LYp~~~~~~~~~~~~~~~~~~~~ 92 (219)
+--+++|||++.-=+.. ...+..+-..+..|++. +....++.||+.+.. .+.++|....-. .+...
T Consensus 77 ~~dvv~VLD~SGSM~~~-~~rl~~ak~a~~~ll~~---L~~~drv~lV~Fs~~-a~~~~p~t~~l~---------~~~~~ 142 (464)
T 4fx5_A 77 ENVEVIIIDCSGSMDYP-RTKMMAAKEATKVAIDT---LTDGAFFAVVAGTEG-ARVVYPTGGQLL---------RADYQ 142 (464)
T ss_dssp CEEEEEEEECCGGGGTT-THHHHHHHHHHHHHHHH---SCTTCEEEEEEESSS-EEEEESSSSSCE---------ECSHH
T ss_pred CceEEEEEEcCcccCCC-CchHHHHHHHHHHHHHh---CCCCCEEEEEEEcCc-eEEEecCCcccc---------cCCHH
Confidence 44599999998765511 12366666666666553 557889999988654 677888532100 00001
Q ss_pred HHHHHHHHHHhhhhcCCCCCCccccccchhhHHHHHHHHHhhhhccCCCCCCceEEEEecCCCCchhhhHHHHHHHHhhh
Q 027721 93 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQR 172 (219)
Q Consensus 93 v~~~l~~li~~~~~~~~~~~~~~~~~s~LagALs~ALCyINR~~~~~~~~~~~RILvis~S~d~~~QYi~lMN~iFaAqK 172 (219)
=.+.+.+.+..-. .. ..+.+..||..|+-.+.+. .....+|++++-+.+....+-.+...+ .+.+
T Consensus 143 ~~~~l~~~I~~L~---~~------GgT~l~~aL~~A~~~l~~~-----~~~~~~IILLTDG~~~~~~~~~l~~~~-~a~~ 207 (464)
T 4fx5_A 143 SRAAAKEAVGRLH---AN------GGTAMGRWLAQAGRIFDTA-----PSAIKHAILLTDGKDESETPADLARAI-QSSI 207 (464)
T ss_dssp HHHHHHHHHHTCC---CC------SCCCHHHHHHHHHHHHTTC-----TTSEEEEEEEESSCCTTSCHHHHHHHH-HHHT
T ss_pred HHHHHHHHHHcCC---CC------CCCcHHHHHHHHHHHHhcC-----CCCCCEEEEEcCCCCCCCChHHHHHHH-HHhc
Confidence 1334444444321 11 2466888888888877652 233567888886655433333344433 4667
Q ss_pred CCceeeEeeeCCC-Cchhhhhh--------ccccchhHHHHHH
Q 027721 173 SMVPIDSCYLGAQ-NSAFLQQC--------MSDRLLTLLVEYI 206 (219)
Q Consensus 173 ~~V~IDvc~L~~~-~s~fLQQA--------~~~~~~~gLlQyL 206 (219)
.+|+|.++-+|.+ +..+|++. +.+++++.|-+.+
T Consensus 208 ~~i~i~tiGiG~~~d~~~L~~IA~~tgG~~~~v~d~~~L~~~f 250 (464)
T 4fx5_A 208 GNFTADCRGIGEDWEPKELRKIADALLGTVGIIRDPATLAEDF 250 (464)
T ss_dssp TTCEEEEEEESSSSCHHHHHHHHHHTTCCEEEESSGGGHHHHH
T ss_pred CCCeEEEEEeCCccCHHHHHHHHHhCCCEEEEcCCHHHHHHHH
Confidence 8999999999844 66788887 6677776655444
No 10
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=94.93 E-value=1.1 Score=35.58 Aligned_cols=174 Identities=7% Similarity=0.032 Sum_probs=89.8
Q ss_pred CCCeEEEEEeCCccccccCcccHHHHHHHHHHHHHHHHhcCCCCcEEEEEEcCCcceEEecCCCCCCCCCCCCCchhHHH
Q 027721 12 DVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCA 91 (219)
Q Consensus 12 ~~slLviIlD~np~~W~~~~~~l~~~l~~llvFlNahL~~~~~N~vaVia~~~~~~~~LYp~~~~~~~~~~~~~~~~~~~ 91 (219)
.+--+++|||.+---... .+..+.+.+..|++..-.....-++.|+..+.. .+.++|-..... .+
T Consensus 14 ~~~div~vlD~SgSM~~~---~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~-~~~~~~~~~~~~--~~--------- 78 (223)
T 1q0p_A 14 GSMNIYLVLDGSDSIGAS---NFTGAKKSLVNLIEKVASYGVKPRYGLVTYATY-PKIWVKVSEADS--SN--------- 78 (223)
T ss_dssp -CEEEEEEEECSTTTCHH---HHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSS-EEEEECTTSGGG--GC---------
T ss_pred CceeEEEEEeCCCCCchH---HHHHHHHHHHHHHHHHhcCCCCceEEEEEecCc-cceeeccccCCC--CC---------
Confidence 355689999996543222 255666666666666555566679999998665 455664321100 00
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCccccccchhhHHHHHHHHHhhhhccCC---CCCCceEEEEecCCCC----chhhhHHH
Q 027721 92 TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGL---LHPQPRILCLQGSPDG----PEQYVAIM 164 (219)
Q Consensus 92 ~v~~~l~~li~~~~~~~~~~~~~~~~~s~LagALs~ALCyINR~~~~~~---~~~~~RILvis~S~d~----~~QYi~lM 164 (219)
.+.+.+.+..-...... ....+.+..||-.|+-.+.+...... ...+..|++++-+.+. +......+
T Consensus 79 --~~~~~~~i~~l~~~~~~----~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~ 152 (223)
T 1q0p_A 79 --ADWVTKQLNEINYEDHK----LKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEI 152 (223)
T ss_dssp --HHHHHHHHHTCCTTSCS----CTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSCTHHHHHHH
T ss_pred --HHHHHHHHHhccccccc----CCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCCCChHHHHHHH
Confidence 22334444432211000 01356788888888877764321100 1234456667754433 33332222
Q ss_pred HHH-------HHhhhCCceeeEeeeCCC-Cchhhhhh----------ccccchhHHHHHH
Q 027721 165 NAI-------FSAQRSMVPIDSCYLGAQ-NSAFLQQC----------MSDRLLTLLVEYI 206 (219)
Q Consensus 165 N~i-------FaAqK~~V~IDvc~L~~~-~s~fLQQA----------~~~~~~~gLlQyL 206 (219)
.-. -.+++.+|.|-++-+|.+ +...|++. +.+++++.|-+.+
T Consensus 153 ~~~~~~~~~~~~~~~~~i~i~~igvG~~~~~~~L~~iA~~~~G~~~~~~~~~~~~L~~~~ 212 (223)
T 1q0p_A 153 RDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVF 212 (223)
T ss_dssp HHHTTCSCBTTBCCGGGEEEEEEECSSCCCHHHHHHHSCCCTTCCCEEETTC--------
T ss_pred HHHHhhhhhhhhcccCCcEEEEEEecCcCCHHHHHHHhcCCCCCceEEEcCCHHHHHHHH
Confidence 222 234677899999999743 55677776 4556666664443
No 11
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=94.16 E-value=1.8 Score=36.31 Aligned_cols=152 Identities=10% Similarity=0.058 Sum_probs=84.2
Q ss_pred CCeEEEEEeCCccccccCcccHHHHHHHHHHHHHHHHh----cCCCCcEEEEEEcCCcceEEecCCCCCCCCCCCCCchh
Q 027721 13 VSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILT----LNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPS 88 (219)
Q Consensus 13 ~slLviIlD~np~~W~~~~~~l~~~l~~llvFlNahL~----~~~~N~vaVia~~~~~~~~LYp~~~~~~~~~~~~~~~~ 88 (219)
+-=+++|||.+.---. .++++.+..|+...+. ....-+|.||..+.. .+.++|-..... .+
T Consensus 21 ~~div~vlD~SgSM~~------~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~-~~~~~~l~~~~~-----~~--- 85 (281)
T 4hqf_A 21 EVDLYLLMDGSGSIRR------HNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNN-AREIIRLHSDAS-----KN--- 85 (281)
T ss_dssp CEEEEEEEECCCCSST------HHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETT-EEEEEEECSSCS-----SC---
T ss_pred ceeEEEEEeCCCCcCH------HHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCC-ceEEEEccccCc-----cC---
Confidence 4458999999643221 2333344444444432 223567999988665 455555332210 00
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCccccccchhhHHHHHHHHHhhhhccCCCCCCceEEEEecCCCCchhhhHHHHHHH
Q 027721 89 LCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIF 168 (219)
Q Consensus 89 ~~~~v~~~l~~li~~~~~~~~~~~~~~~~~s~LagALs~ALCyINR~~~~~~~~~~~RILvis~S~d~~~QYi~lMN~iF 168 (219)
.+.+.+.|.++-... .. ...+.+..||..|.-.+.+.. .....+..|++|+-+.+. ..-.+...+-
T Consensus 86 -~~~l~~~i~~l~~~~-~~--------~G~T~~~~aL~~a~~~l~~~~--~r~~~~~~iillTDG~~~--d~~~~~~~~~ 151 (281)
T 4hqf_A 86 -KEKALIIIKSLLSTN-LP--------YGKTSLTDALLQVRKHLNDRI--NRENANQLVVILTDGIPD--SIQDSLKESR 151 (281)
T ss_dssp -HHHHHHHHHHHHHTT-GG--------GCSCCHHHHHHHHHHHHHTSC--CCTTCEEEEEEEESSCCS--CHHHHHHHHH
T ss_pred -HHHHHHHHHHHhhcc-CC--------CCCccHHHHHHHHHHHHHhcc--CCCCCCEEEEEEecCCCC--CcHHHHHHHH
Confidence 122344444432100 00 125678888888877665431 112344556667754433 2235677888
Q ss_pred HhhhCCceeeEeeeCCC-Cchhhhhh
Q 027721 169 SAQRSMVPIDSCYLGAQ-NSAFLQQC 193 (219)
Q Consensus 169 aAqK~~V~IDvc~L~~~-~s~fLQQA 193 (219)
.+++.+|.|-++-+|.. +..+|++.
T Consensus 152 ~l~~~gv~i~~igiG~~~~~~~L~~i 177 (281)
T 4hqf_A 152 KLSDRGVKIAVFGIGQGINVAFNRFL 177 (281)
T ss_dssp HHHHTTCEEEEEEESSSCCHHHHHHH
T ss_pred HHHHCCCEEEEEeCCCccCHHHHHhh
Confidence 88999999999999863 66677765
No 12
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=93.79 E-value=2.2 Score=34.38 Aligned_cols=142 Identities=10% Similarity=0.027 Sum_probs=75.2
Q ss_pred CCeEEEEEeCCccccccCcccHHHHHHHHHHHHHHHHhcCCCCcEEEEEEcCCcceEEecCCCCCCCCCCCCCchhHHHH
Q 027721 13 VSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCAT 92 (219)
Q Consensus 13 ~slLviIlD~np~~W~~~~~~l~~~l~~llvFlNahL~~~~~N~vaVia~~~~~~~~LYp~~~~~~~~~~~~~~~~~~~~ 92 (219)
+-=++++||.+.--. .+..+.+.+..|++..-.....-++.||..+.. .+..+|-.... .
T Consensus 22 ~~div~vlD~SgSM~-----~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~-~~~~~~l~~~~-------~------- 81 (223)
T 2b2x_A 22 QLDIVIVLDGSNSIY-----PWESVIAFLNDLLKRMDIGPKQTQVGIVQYGEN-VTHEFNLNKYS-------S------- 81 (223)
T ss_dssp CEEEEEEEECSTTCC-----CHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSS-EEEEECTTTCC-------S-------
T ss_pred cceEEEEEECCCChh-----hHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCC-ccEEEecCCCC-------C-------
Confidence 445899999966432 133333333333332211246789999998654 66677752211 0
Q ss_pred HHHHHHHHHHhhhhcCCCCCCccccccchhhHHHHHHHHHhhhhccCCCCCCceEEEEecCCCCchhhhHHHHHHHHhhh
Q 027721 93 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQR 172 (219)
Q Consensus 93 v~~~l~~li~~~~~~~~~~~~~~~~~s~LagALs~ALCyINR~~~~~~~~~~~RILvis~S~d~~~QYi~lMN~iFaAqK 172 (219)
.+.+.+.+..- ...+ -..+.+..||..|+-.+.+..+.........|++++-+.+.... .+-..+-.+++
T Consensus 82 -~~~~~~~i~~l---~~~g----G~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~~~~~--~~~~~~~~~~~ 151 (223)
T 2b2x_A 82 -TEEVLVAANKI---VQRG----GRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHDNY--RLKQVIQDCED 151 (223)
T ss_dssp -HHHHHHHHTTC---CCCC----CSSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCTTGG--GHHHHHHHHHT
T ss_pred -HHHHHHHHHhh---hccC----CCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCc--cHHHHHHHHHH
Confidence 22233333321 1110 01366888888887653322111112334456667755443322 34455667788
Q ss_pred CCceeeEeeeCC
Q 027721 173 SMVPIDSCYLGA 184 (219)
Q Consensus 173 ~~V~IDvc~L~~ 184 (219)
.+|.|-++-+|.
T Consensus 152 ~gi~v~~igvG~ 163 (223)
T 2b2x_A 152 ENIQRFSIAILG 163 (223)
T ss_dssp TTEEEEEEEECG
T ss_pred CCCEEEEEEecC
Confidence 999999999974
No 13
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=93.13 E-value=3.3 Score=37.55 Aligned_cols=178 Identities=11% Similarity=0.076 Sum_probs=102.6
Q ss_pred CCCCeEEEEEeCCccccccCcccHHHHHHHHHHHHHHHHhcCCCCcEEEEEEcCCcceEEecCCCCCCCCCCCCCchhHH
Q 027721 11 DDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLC 90 (219)
Q Consensus 11 ~~~slLviIlD~np~~W~~~~~~l~~~l~~llvFlNahL~~~~~N~vaVia~~~~~~~~LYp~~~~~~~~~~~~~~~~~~ 90 (219)
..+--++++||.+.---.. .+..+-+.+..|++..-.....-+++||..+.. .+.++|-..... . +
T Consensus 7 ~~~~divfvlD~SgSM~~~---~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~-~~~~~~l~~~~~--~---~----- 72 (509)
T 2odp_A 7 SGHLNLYLLLDASQSVSEN---DFLIFKESASLMVDRIFSFEINVSVAIITFASE-PKVLMSVLNDNS--R---D----- 72 (509)
T ss_dssp SSEEEEEEEEECSTTSCHH---HHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSS-EEEEECTTSGGG--G---C-----
T ss_pred CCCeeEEEEEeCCCccchh---hHHHHHHHHHHHHHHhhccCCCceEEEEEccCC-CceeEeccCCCC--C---C-----
Confidence 3455689999997654332 366666667777776655678899999998654 666777532110 0 0
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCccccccchhhHHHHHHHHHhhhhccCC------CCCCceEEEEecCCCC----chhh
Q 027721 91 ATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGL------LHPQPRILCLQGSPDG----PEQY 160 (219)
Q Consensus 91 ~~v~~~l~~li~~~~~~~~~~~~~~~~~s~LagALs~ALCyINR~~~~~~------~~~~~RILvis~S~d~----~~QY 160 (219)
.+.+.+.+..-.....+ ....+.+..||..|+-.+.+...... ...+..|++++-+.+. +.+.
T Consensus 73 ---~~~~~~~l~~l~~~~~~----~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~ 145 (509)
T 2odp_A 73 ---MTEVISSLENANYKDHE----NGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGSPKTA 145 (509)
T ss_dssp ---HHHHHHHHHTCCGGGGT----TCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSSCTHHH
T ss_pred ---HHHHHHHHHhcccccCC----CCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccCCCChhHH
Confidence 23333444332111100 01357788999988877644321110 1234556777754332 1222
Q ss_pred hHHHHHHH---HhhhCCceeeEeeeCC--CCchhhhhh----------ccccchhHHHHHHHHh
Q 027721 161 VAIMNAIF---SAQRSMVPIDSCYLGA--QNSAFLQQC----------MSDRLLTLLVEYIISL 209 (219)
Q Consensus 161 i~lMN~iF---aAqK~~V~IDvc~L~~--~~s~fLQQA----------~~~~~~~gLlQyLl~~ 209 (219)
...+.-.+ .+++.+|.|-++-+|. -+...|++. +.+.+.+.|-+.+-..
T Consensus 146 ~~~~~~~~~~~~~~~~~i~i~~iGvG~~~~~~~~L~~iA~~~~G~~~~~~~~~~~~l~~~~~~i 209 (509)
T 2odp_A 146 VDHIREILNINQKRNDYLDIYAIGVGKLDVDWRELNELGSKKDGERHAFILQDTKALHQVFEHM 209 (509)
T ss_dssp HHHHHHHTTCCSTTGGGEEEEEEEESSSCCCHHHHHHHSCCCTTCCCEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccCceEEEEEEcCCCcccHHHHHhhccCCCCceeeEEecCHHHHHHHHHhh
Confidence 22222221 1348899999999986 366788877 5678888888777544
No 14
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=92.94 E-value=3.2 Score=34.65 Aligned_cols=154 Identities=8% Similarity=0.051 Sum_probs=82.9
Q ss_pred CCeEEEEEeCCccccccCcccH-HHHHHHHHHHHHHHHhcCCCCcEEEEEEcCCcceEEecCCCCCCCCCCCCCchhH-H
Q 027721 13 VSLVVVLLDTNPFFWSSSSLSF-SQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSL-C 90 (219)
Q Consensus 13 ~slLviIlD~np~~W~~~~~~l-~~~l~~llvFlNahL~~~~~N~vaVia~~~~~~~~LYp~~~~~~~~~~~~~~~~~-~ 90 (219)
+-=++++||.+.---.. .+ ..+.+.+..|++..-.-...-++.|+..+.. .+.++|-.... .. .
T Consensus 18 ~~DivfvlD~SgSM~~~---~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~-~~~~~~l~~~~----------~~~~ 83 (266)
T 4hqo_A 18 QVDLYLLVDGSGSIGYP---NWITKVIPMLNGLINSLSLSRDTINLYMNLFGSY-TTELIRLGSGQ----------SIDK 83 (266)
T ss_dssp CEEEEEEEECSTTTCHH---HHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSS-EEEEECTTSHH----------HHCH
T ss_pred ceeEEEEEECCCCcChh---HHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCC-cceEEecCCCC----------ccCH
Confidence 33488999996432111 13 1233333333443322235678888888665 56666632210 00 1
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCccccccchhhHHHHHHHHHhhhhccCCCCCCceEEEEecCCCCchhhhHHHHHHHHh
Q 027721 91 ATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSA 170 (219)
Q Consensus 91 ~~v~~~l~~li~~~~~~~~~~~~~~~~~s~LagALs~ALCyINR~~~~~~~~~~~RILvis~S~d~~~QYi~lMN~iFaA 170 (219)
+.+.+.|.++-... . . ...+.+..||..|.-.+.+.. ........|++++-+... ..-.+...+-.+
T Consensus 84 ~~~~~~i~~l~~~~-~--~------~G~T~~~~AL~~a~~~l~~~~--~r~~~~~~iIllTDG~~~--d~~~~~~~a~~l 150 (266)
T 4hqo_A 84 RQALSKVTELRKTY-T--P------YGTTSMTAALDEVQKHLNDRV--NREKAIQLVILMTDGVPN--SKYRALEVANKL 150 (266)
T ss_dssp HHHHHHHHHHHHHC-C--C------CSCCCHHHHHHHHHHHHHTTC--SCTTSEEEEEEEECSCCS--CHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcc-C--C------CCCCCHHHHHHHHHHHHhhcc--ccCCCCeEEEEEccCCCC--CchHHHHHHHHH
Confidence 22344444332100 1 1 125678888888854444320 112344556667744332 223556788889
Q ss_pred hhCCceeeEeeeCCC-Cchhhhhh
Q 027721 171 QRSMVPIDSCYLGAQ-NSAFLQQC 193 (219)
Q Consensus 171 qK~~V~IDvc~L~~~-~s~fLQQA 193 (219)
++.+|.|-++-+|.. +..+|++.
T Consensus 151 ~~~gi~i~~iGiG~~~~~~~L~~i 174 (266)
T 4hqo_A 151 KQRNVRLAVIGIGQGINHQFNRLI 174 (266)
T ss_dssp HHTTCEEEEEECSSSCCHHHHHHH
T ss_pred HHCCCEEEEEecCcccCHHHHHHh
Confidence 999999999999853 56677664
No 15
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=92.57 E-value=4.1 Score=38.69 Aligned_cols=173 Identities=8% Similarity=0.042 Sum_probs=95.2
Q ss_pred CCeEEEEEeCCccccccCcccHHHHHHHHHHHHHHHHhcCCCCcEEEEEEcCCcceEEecCCCCCCCCCCCCCchhHHHH
Q 027721 13 VSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCAT 92 (219)
Q Consensus 13 ~slLviIlD~np~~W~~~~~~l~~~l~~llvFlNahL~~~~~N~vaVia~~~~~~~~LYp~~~~~~~~~~~~~~~~~~~~ 92 (219)
+-=+++|||.+.---.. .|..+-+.+..|++..-.....-+++||..+.. .+.++|-..... . +
T Consensus 243 ~~div~vlD~SgSM~~~---~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~-~~~~~~l~~~~~--~---~------- 306 (741)
T 3hrz_D 243 SMNIYLVLDGSGSIGAS---DFTGAKKCLVNLIEKVASYGVKPRYGLVTYATY-PKIWVKVSEADS--S---N------- 306 (741)
T ss_dssp EEEEEEEEECSTTTCHH---HHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSS-EEEEECTTSGGG--G---C-------
T ss_pred ceeEEEEeccCCccccc---chHHHHHHHHHHHHhhhccCCCceEEEEEeccC-CceeEeecccCC--c---C-------
Confidence 34589999996543222 355555666666666555556678999998654 566666443110 0 0
Q ss_pred HHHHHHHHHHhhhhcCCCCCCccccccchhhHHHHHHHHHhhhhcc---CCCCCCceEEEEecCCC-CchhhhHHHHHHH
Q 027721 93 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRS---GLLHPQPRILCLQGSPD-GPEQYVAIMNAIF 168 (219)
Q Consensus 93 v~~~l~~li~~~~~~~~~~~~~~~~~s~LagALs~ALCyINR~~~~---~~~~~~~RILvis~S~d-~~~QYi~lMN~iF 168 (219)
.+.+.+.+.+-...... ....+.+..||..|+-.+.+.... .....+..|++|+-+.+ ....-.+...-+-
T Consensus 307 -~~~~~~~i~~l~~~~~~----~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~~p~~~~~~i~ 381 (741)
T 3hrz_D 307 -ADWVTKQLNEINYEDHK----LKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIR 381 (741)
T ss_dssp -HHHHHHHHTTCCGGGGS----SSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSSCTHHHHHHHH
T ss_pred -HHHHHHHHHhccccccc----CCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCCCchHHHHHHH
Confidence 23344444432110000 013567889999988887432111 11123345666775532 2222233333333
Q ss_pred ----------HhhhCCceeeEeeeCC-CCchhhhhh----------ccccchhHHHHHH
Q 027721 169 ----------SAQRSMVPIDSCYLGA-QNSAFLQQC----------MSDRLLTLLVEYI 206 (219)
Q Consensus 169 ----------aAqK~~V~IDvc~L~~-~~s~fLQQA----------~~~~~~~gLlQyL 206 (219)
.|++.+|.|-++-+|. -+...|++. +++++.+.|-+.+
T Consensus 382 ~~~~~~~~a~~~~~~gi~i~~igvG~~~~~~~L~~ia~~~~g~~~~~~~~~~~~L~~~~ 440 (741)
T 3hrz_D 382 DLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVF 440 (741)
T ss_dssp HHTTCSSCTTCCCGGGEEEEEEECSSSCCHHHHHHHSCCCTTCCCEECBSSHHHHHHHH
T ss_pred HHhhcccccccccccCeeEEEEeCCCcCCHHHHHHHhcCCCCcceEEEeCCHHHHHHHH
Confidence 5677899999999975 356677776 5567776665544
No 16
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=92.26 E-value=3.5 Score=32.61 Aligned_cols=160 Identities=11% Similarity=0.021 Sum_probs=86.4
Q ss_pred CCCeEEEEEeCCccccccCcccHHHHHHHHHHHHHHHHhcCCCCcEEEEEEcCCcceEEecCCCCCCCCCCCCCchhHHH
Q 027721 12 DVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCA 91 (219)
Q Consensus 12 ~~slLviIlD~np~~W~~~~~~l~~~l~~llvFlNahL~~~~~N~vaVia~~~~~~~~LYp~~~~~~~~~~~~~~~~~~~ 91 (219)
.+-=++++||.+.--- ...|..+.+.+..|++.+-.....-+++||..+.. .+..+|-.... .
T Consensus 20 ~~~DivfvlD~S~Sm~---~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~-~~~~~~l~~~~-------~------ 82 (199)
T 3zqk_A 20 MVLDVAFVLEGSDKIG---EADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYM-VTVEYPFSEAQ-------S------ 82 (199)
T ss_dssp CCCEEEEEEECCTTTC---HHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSS-EEEEECTTSCC-------C------
T ss_pred CCcCEEEEEECCCCCC---HHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCc-ccEEEecCCcC-------C------
Confidence 4456889999964322 12355555555555555433356788999998765 56677644211 0
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCccccccchhhHHHHHHHHHhhhhccCCCCCCceEEEEecCCCCchhhhHHHHHHHHhh
Q 027721 92 TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQ 171 (219)
Q Consensus 92 ~v~~~l~~li~~~~~~~~~~~~~~~~~s~LagALs~ALCyINR~~~~~~~~~~~RILvis~S~d~~~QYi~lMN~iFaAq 171 (219)
.+.+.+.+.+-.... ...+.+..||..|+..+-+..+...+..+..|++++-+.... . +. ..
T Consensus 83 --~~~~~~~i~~l~~~g-------g~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~d-~-v~-------~~ 144 (199)
T 3zqk_A 83 --KGDILQRLREIRYQG-------GNRTNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPASD-E-IK-------RL 144 (199)
T ss_dssp --HHHHHHHHHHCCCCC-------CSCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEEEEECSCCSS-C-CC-------CC
T ss_pred --HHHHHHHHHhCcCCC-------CCcChHHHHHHHHHHHhhCcccCCCCCCCeEEEEEeCCCCch-H-HH-------HH
Confidence 223334443321111 013667888888776543222111223344566666443211 1 10 11
Q ss_pred hCCceeeEeeeC-CCCchhhhhh------ccccchhHHHHHH
Q 027721 172 RSMVPIDSCYLG-AQNSAFLQQC------MSDRLLTLLVEYI 206 (219)
Q Consensus 172 K~~V~IDvc~L~-~~~s~fLQQA------~~~~~~~gLlQyL 206 (219)
+.+|.|-++-+| +-+...|++. +.+++++.|-+.+
T Consensus 145 ~~~v~v~~iGiG~~~~~~~L~~iA~~~~~~~~~~~~~L~~~~ 186 (199)
T 3zqk_A 145 PGDIQVVPIGVGPNANVQELERIGWPNAPILIQDFETLPREA 186 (199)
T ss_dssp CTTEEEEEEEESTTCCHHHHHHHHTTSCCEEESCTTTHHHHH
T ss_pred hCCCEEEEEEcCCCCCHHHHHHHhCCCceEEeCCHHHHHHHH
Confidence 368999888887 3466788877 6667766655443
No 17
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=92.23 E-value=3.6 Score=32.71 Aligned_cols=142 Identities=10% Similarity=0.006 Sum_probs=74.8
Q ss_pred CCeEEEEEeCCccccccCcccHHHHHHHHHHHHHHHHhcCCCCcEEEEEEcCCcceEEecCCCCCCCCCCCCCchhHHHH
Q 027721 13 VSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCAT 92 (219)
Q Consensus 13 ~slLviIlD~np~~W~~~~~~l~~~l~~llvFlNahL~~~~~N~vaVia~~~~~~~~LYp~~~~~~~~~~~~~~~~~~~~ 92 (219)
+-=++++||.+.--. .+..+-+.+..|++..-.....-++.||..+.. .+..+|-.... .
T Consensus 7 ~~div~vlD~SgSm~-----~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~-~~~~~~l~~~~-------~------- 66 (213)
T 1pt6_A 7 QLDIVIVLDGSNSIY-----PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGEN-VTHEFNLNKYS-------S------- 66 (213)
T ss_dssp CEEEEEEEECCTTCC-----CHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSS-EEEEECTTTCS-------S-------
T ss_pred CccEEEEEECCCChh-----hHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCC-ccEEEeccccC-------C-------
Confidence 346889999965332 133333323333322111246789999998654 66677752211 0
Q ss_pred HHHHHHHHHHhhhhcCCCCCCccccccchhhHHHHHHHHHhhhhccCCCCCCceEEEEecCCCCchhhhHHHHHHHHhhh
Q 027721 93 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQR 172 (219)
Q Consensus 93 v~~~l~~li~~~~~~~~~~~~~~~~~s~LagALs~ALCyINR~~~~~~~~~~~RILvis~S~d~~~QYi~lMN~iFaAqK 172 (219)
.+.+.+.+..-... . -..+.+..||..|+-.+-+..+...+.....|++++-+.+.... .+-..+-.+++
T Consensus 67 -~~~~~~~i~~l~~~--~-----G~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~--~~~~~~~~~~~ 136 (213)
T 1pt6_A 67 -TEEVLVAAKKIVQR--G-----GRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDNH--RLKKVIQDCED 136 (213)
T ss_dssp -HHHHHHHHHTCCCC--C-----CSSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCSH--HHHHHHHHHHH
T ss_pred -HHHHHHHHHhccCC--C-----CCcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCc--cHHHHHHHHHH
Confidence 22233333321110 0 01356888888887654322111112344556667755443322 34456667889
Q ss_pred CCceeeEeeeCC
Q 027721 173 SMVPIDSCYLGA 184 (219)
Q Consensus 173 ~~V~IDvc~L~~ 184 (219)
.+|.|-++.+|.
T Consensus 137 ~gi~i~~igig~ 148 (213)
T 1pt6_A 137 ENIQRFSIAILG 148 (213)
T ss_dssp TTEEEEEEEECH
T ss_pred CCCEEEEEEecc
Confidence 999999999973
No 18
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=91.95 E-value=0.63 Score=36.48 Aligned_cols=152 Identities=9% Similarity=0.043 Sum_probs=81.2
Q ss_pred CCCeEEEEEeCCccccccCcccHHHHHHHHHHHHHHHHhcCCCCcEEEEEEcCCcceEEecCCCCCCCCCCCCCchhHHH
Q 027721 12 DVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCA 91 (219)
Q Consensus 12 ~~slLviIlD~np~~W~~~~~~l~~~l~~llvFlNahL~~~~~N~vaVia~~~~~~~~LYp~~~~~~~~~~~~~~~~~~~ 91 (219)
.+-=++++||++.--... .+....+.+..+++... ...-++.|+..+.. .+..+|-.... +
T Consensus 8 ~~~div~vlD~SgSM~~~---~~~~~~~~~~~~~~~l~--~~~~~v~lv~f~~~-~~~~~~~~~~~----~--------- 68 (198)
T 1n3y_A 8 QEQDIVFLIDGSGSISSR---NFATMMNFVRAVISQFQ--RPSTQFSLMQFSNK-FQTHFTFEEFR----R--------- 68 (198)
T ss_dssp CCEEEEEEEECCTTSCHH---HHHHHHHHHHHHHTTSC--TTTEEEEEEEESSS-EEEEECHHHHH----H---------
T ss_pred CCeeEEEEEECCCCCCHH---HHHHHHHHHHHHHHhcC--CCCcEEEEEEeCCC-ccEEEecCccC----C---------
Confidence 345689999997543322 23344444444444332 67888999988665 44455521100 0
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCccccccchhhHHHHHHHHHhhhhccCCCCCCceEEEEecCCCCchhhhHHHHHHHHhh
Q 027721 92 TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQ 171 (219)
Q Consensus 92 ~v~~~l~~li~~~~~~~~~~~~~~~~~s~LagALs~ALCyINR~~~~~~~~~~~RILvis~S~d~~~QYi~lMN~iFaAq 171 (219)
.+.+.+.+.. .... ...+.+..||..|+-.+-+..+......+..|++++-+.+.... ...-..+-.++
T Consensus 69 --~~~~~~~i~~---l~~~-----~g~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~-~~~~~~~~~~~ 137 (198)
T 1n3y_A 69 --SSNPLSLLAS---VHQL-----QGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDS-LDYKDVIPMAD 137 (198)
T ss_dssp --CSSGGGGGTT---CCCC-----CSCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCS-SCHHHHHHHHH
T ss_pred --HHHHHHHHhc---CcCC-----CCCchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCCCCCCc-ccHHHHHHHHH
Confidence 0011111111 1111 13567888888888544222111112344556667755443211 22345566779
Q ss_pred hCCceeeEeeeCCCC-----chhhhhh
Q 027721 172 RSMVPIDSCYLGAQN-----SAFLQQC 193 (219)
Q Consensus 172 K~~V~IDvc~L~~~~-----s~fLQQA 193 (219)
+.+|.|.++-+|... ...|++.
T Consensus 138 ~~gi~i~~igvG~~~~~~~~~~~L~~i 164 (198)
T 1n3y_A 138 AAGIIRYAIGVGLAFQNRNSWKELNDI 164 (198)
T ss_dssp HTTCEEEEEEESGGGGSSTTHHHHHHH
T ss_pred HCCCEEEEEEccccccccccHHHHHHH
Confidence 999999999997532 4677776
No 19
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=91.62 E-value=0.33 Score=38.27 Aligned_cols=149 Identities=10% Similarity=0.039 Sum_probs=77.9
Q ss_pred CCeEEEEEeCCccccccCcccHHHHHHHHHHHHHHHHhcCCCCcEEEEEEcCCcceEEecCCCCCCCCCCCCCchhHHHH
Q 027721 13 VSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCAT 92 (219)
Q Consensus 13 ~slLviIlD~np~~W~~~~~~l~~~l~~llvFlNahL~~~~~N~vaVia~~~~~~~~LYp~~~~~~~~~~~~~~~~~~~~ 92 (219)
+-=++++||.+.--... .+..+.+.+..|+...- ...-+++|+..+.. .+.++|-... .+
T Consensus 5 ~~div~vlD~SgSm~~~---~~~~~k~~~~~~~~~l~--~~~~~v~vv~f~~~-~~~~~~l~~~-------------~~- 64 (194)
T 1mf7_A 5 DSDIAFLIDGSGSIIPH---DFRRMKEFVSTVMEQLK--KSKTLFSLMQYSEE-FRIHFTFKEF-------------QN- 64 (194)
T ss_dssp CEEEEEEEECCTTSCHH---HHHHHHHHHHHHHHHHC--CTTEEEEEEEESSS-EEEEECHHHH-------------HH-
T ss_pred CeeEEEEEeCCCCCCHH---HHHHHHHHHHHHHHhcC--CCCeEEEEEEecCC-ceEEEecCCc-------------CC-
Confidence 34578999997643221 24444444444444432 44568999988554 5566663210 00
Q ss_pred HHHHHHHHHHhhhhcCCCCCCccccccchhhHHHHHHHHHhhhhccCCCCCCceEEEEecCCCC--chhhhHHHHHHHHh
Q 027721 93 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDG--PEQYVAIMNAIFSA 170 (219)
Q Consensus 93 v~~~l~~li~~~~~~~~~~~~~~~~~s~LagALs~ALCyINR~~~~~~~~~~~RILvis~S~d~--~~QYi~lMN~iFaA 170 (219)
.+.+.+.+..-.. . ...+.+..||-.|+-.+.+..+...+.....|++++-+.+. +..+ -..+-.+
T Consensus 65 -~~~~~~~i~~l~~---~-----~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~d~~~~---~~~~~~~ 132 (194)
T 1mf7_A 65 -NPNPRSLVKPITQ---L-----LGRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKFGDPLGY---EDVIPEA 132 (194)
T ss_dssp -SCCHHHHHTTCCC---C-----CSCBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCBSCSSCG---GGTHHHH
T ss_pred -HHHHHHHHHhCcC---C-----CCCchHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCchhh---HHHHHHH
Confidence 0112222322111 1 12566788888887544322111112233446667754432 2212 2345667
Q ss_pred hhCCceeeEeeeCCCC-----chhhhhh
Q 027721 171 QRSMVPIDSCYLGAQN-----SAFLQQC 193 (219)
Q Consensus 171 qK~~V~IDvc~L~~~~-----s~fLQQA 193 (219)
++.+|.|-++-+|... ...|++.
T Consensus 133 ~~~gi~v~~igvG~~~~~~~~~~~L~~i 160 (194)
T 1mf7_A 133 DREGVIRYVIGVGDAFRSEKSRQELNTI 160 (194)
T ss_dssp HHTTEEEEEEEESGGGCSHHHHHHHHHH
T ss_pred HHCCCEEEEEEecccccccccHHHHHHH
Confidence 8999999999997542 3567666
No 20
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=90.63 E-value=7.9 Score=34.71 Aligned_cols=172 Identities=8% Similarity=0.054 Sum_probs=91.4
Q ss_pred eEEEEEeCCccccccCcccHHHHHHHHHHHHHHHHhcCCCCcEEEEEEcCCcceEEecCCCCCCCCCCCCCchhHHHHHH
Q 027721 15 LVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLL 94 (219)
Q Consensus 15 lLviIlD~np~~W~~~~~~l~~~l~~llvFlNahL~~~~~N~vaVia~~~~~~~~LYp~~~~~~~~~~~~~~~~~~~~v~ 94 (219)
-+++|||.+.--... .|..+-+.+..|++..-.....-+++||..+.. .+..++-..... .+ .
T Consensus 3 div~vlD~SgSM~~~---~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~-~~~~~~~~~~~~--~~-----------~ 65 (497)
T 1rrk_A 3 NIYLVLDGSDSIGAS---NFTGAKKVLVNLIEKVASYGVKPRYGLVTYATY-PKIWVKVSEADS--SN-----------A 65 (497)
T ss_dssp EEEEEEECSTTTCHH---HHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSS-EEEEECTTSGGG--GC-----------H
T ss_pred eEEEEEECCCCcchh---hHHHHHHHHHHHHHHhhccCCCceEEEEEecCC-ceEeeccccccc--cC-----------H
Confidence 378999997653322 355566666666666555566789999998754 454553211100 00 2
Q ss_pred HHHHHHHHhhhhcCCCCCCccccccchhhHHHHHHHHHhhhhc---cCCCCCCceEEEEecCCCC-chhhhHHHHHHHH-
Q 027721 95 QNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFR---SGLLHPQPRILCLQGSPDG-PEQYVAIMNAIFS- 169 (219)
Q Consensus 95 ~~l~~li~~~~~~~~~~~~~~~~~s~LagALs~ALCyINR~~~---~~~~~~~~RILvis~S~d~-~~QYi~lMN~iFa- 169 (219)
+.+.+.+.+-...... ....+.+..||..|+-.+.+... ......+..|++++-.... ..........+=.
T Consensus 66 ~~~~~~l~~l~~~~~~----~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~ 141 (497)
T 1rrk_A 66 DWVTKQLNEINYEDHK----LKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDL 141 (497)
T ss_dssp HHHHHHHHHCCGGGSC----CTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHH
T ss_pred HHHHHHHHhCcCcccc----ccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCCChhHHHHHHHHH
Confidence 2333334332211100 01256788888888877743211 0012234456667754332 1122222222211
Q ss_pred ---------hhhCCceeeEeeeCCC-Cchhhhhh----------ccccchhHHHHHHH
Q 027721 170 ---------AQRSMVPIDSCYLGAQ-NSAFLQQC----------MSDRLLTLLVEYII 207 (219)
Q Consensus 170 ---------AqK~~V~IDvc~L~~~-~s~fLQQA----------~~~~~~~gLlQyLl 207 (219)
+.+.+|.|-++-+|.+ +...|++. +.+++.+.|-+.+-
T Consensus 142 ~~~~~~~~~~~~~~i~v~~igvG~~~~~~~L~~iA~~~~g~~~~~~~~~~~~l~~~~~ 199 (497)
T 1rrk_A 142 LYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALASKKDNEQHVCKVKDMECLEDVFY 199 (497)
T ss_dssp TTCSSCC-CCCGGGEEEEEEECSSSCCHHHHHHHSCCCTTCCCEEETTCHHHHHHHHH
T ss_pred hhhhcccccchhcCeeEEEecCCCccCHHHHHHHhcCCCCcceEEEeCCHHHHhhhhh
Confidence 2334899999999753 55677776 56677777777664
No 21
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=88.35 E-value=17 Score=34.46 Aligned_cols=163 Identities=13% Similarity=0.125 Sum_probs=96.8
Q ss_pred CeEEEEEeCCcccccc----CcccHHHHHHHHHHHHHHHHhcCCCCcEEEEEEcCCcceEEecCCCCCCCCCCCCCchh-
Q 027721 14 SLVVVLLDTNPFFWSS----SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPS- 88 (219)
Q Consensus 14 slLviIlD~np~~W~~----~~~~l~~~l~~llvFlNahL~~~~~N~vaVia~~~~~~~~LYp~~~~~~~~~~~~~~~~- 88 (219)
.-++++||+++.=-.. .+--|..+++.+..|++.-+..+...+|.||..+..... .+.. -++......
T Consensus 36 e~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~----n~l~---~d~i~v~~~L 108 (609)
T 1jey_A 36 DSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDK----NSVN---FKNIYVLQEL 108 (609)
T ss_dssp EEEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCB----STTC---CTTEEEEEEE
T ss_pred eEEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCC----CcCC---CCCeEEEecC
Confidence 4599999999863332 234689999999999998888889999999998777532 1100 000000000
Q ss_pred --HHHHHHHHHHHHHHhh------hhcCCCCCCccccccchhhHHHHHHHHHhhhhccCCCC-CCceEEEEecCCCCch-
Q 027721 89 --LCATLLQNLEEFMNKD------EQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLH-PQPRILCLQGSPDGPE- 158 (219)
Q Consensus 89 --~~~~v~~~l~~li~~~------~~~~~~~~~~~~~~s~LagALs~ALCyINR~~~~~~~~-~~~RILvis~S~d~~~- 158 (219)
.....++.|.+++.++ ...+. ...+.+.-||..|.-.+.+. ..+ .+.||++||-..+...
T Consensus 109 ~~~~~~~ik~l~~l~~~~~~~~~~~~~g~------~~~t~l~daL~~a~~~f~~~----~~k~~~k~IiL~TDg~~p~~~ 178 (609)
T 1jey_A 109 DNPGAKRILELDQFKGQQGQKRFQDMMGH------GSDYSLSEVLWVCANLFSDV----QFKMSHKRIMLFTNEDNPHGN 178 (609)
T ss_dssp ECCCHHHHHHHHTTSHHHHHHHHHHHHCC------SCCCCHHHHHHHHHHHHHTC----SSCEEEEEEEEEESCSCTTTT
T ss_pred CCCCHHHHHHHHHHhhcccchhhhhhcCC------CCCCCHHHHHHHHHHHHHhh----chhhcCCEEEEEcCCCCCCCC
Confidence 0011233444443310 00010 12456777777776444332 122 3678999998665322
Q ss_pred ---hhhHHHHHHHHhhhCCceeeEeeeCCCC----chhhhhh
Q 027721 159 ---QYVAIMNAIFSAQRSMVPIDSCYLGAQN----SAFLQQC 193 (219)
Q Consensus 159 ---QYi~lMN~iFaAqK~~V~IDvc~L~~~~----s~fLQQA 193 (219)
+.......+=.|++.+|.|.+.-+|..+ +.|.+..
T Consensus 179 ~~~~~~~~~~~a~~l~~~gI~i~~igig~~~~fd~~~fy~~~ 220 (609)
T 1jey_A 179 DSAKASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDI 220 (609)
T ss_dssp CHHHHHHHHHHHHHHHHHTEEEEEEEBCCTTCCCTTTTGGGT
T ss_pred chHHHHHHHHHHHHHHhcCcEEEEEecCCCCccchhhhhhhh
Confidence 2346677788889999999999997432 3466555
No 22
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=88.25 E-value=7.9 Score=30.31 Aligned_cols=141 Identities=12% Similarity=0.065 Sum_probs=75.2
Q ss_pred CCeEEEEEeCCccccccCcccHHHHHHHHHHHHHHHHhcCCCCcEEEEEEcCCcceEEecCCCCCCCCCCCCCchhHHHH
Q 027721 13 VSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCAT 92 (219)
Q Consensus 13 ~slLviIlD~np~~W~~~~~~l~~~l~~llvFlNahL~~~~~N~vaVia~~~~~~~~LYp~~~~~~~~~~~~~~~~~~~~ 92 (219)
+-=++++||.+.--. .+..+.+.+..|++..-.-...-++.||..+.. .+..+|-.... .
T Consensus 6 ~~div~vlD~SgSm~-----~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~-~~~~~~l~~~~-------~------- 65 (200)
T 1v7p_C 6 LIDVVVVCDESNSIY-----PWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANN-PRVVFNLNTYK-------T------- 65 (200)
T ss_dssp CEEEEEEEECCTTCC-----CHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSS-EEEEECTTTCS-------S-------
T ss_pred cccEEEEEECCCCcc-----cHHHHHHHHHHHHHhcCCCCCceEEEEEEECCC-ceEEEeCCCcC-------C-------
Confidence 446889999976432 244443333334432211234778999988654 56677754211 0
Q ss_pred HHHHHHHHHHhhhhcCCCCCCccccccchhhHHHHHHHHHhhhhccCCCCCCceEEEEecCCCCchhhhHHHHHHHHhhh
Q 027721 93 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQR 172 (219)
Q Consensus 93 v~~~l~~li~~~~~~~~~~~~~~~~~s~LagALs~ALCyINR~~~~~~~~~~~RILvis~S~d~~~QYi~lMN~iFaAqK 172 (219)
.+.+.+.+..-.... -..+.+..||..|+-.+-+......+.....|++++-..+... ..+...+-.+++
T Consensus 66 -~~~~~~~i~~l~~~~-------G~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~~--~~~~~~~~~~~~ 135 (200)
T 1v7p_C 66 -KEEMIVATSQTSQYG-------GDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDG--SMLKAVIDQCNH 135 (200)
T ss_dssp -HHHHHHHHHHCCCCC-------CSCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSCG--GGHHHHHHHHHH
T ss_pred -HHHHHHHHHhhhccC-------CCCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCCCc--ccHHHHHHHHHH
Confidence 223333333211110 0136688888888775322111111233445666775544322 233556777899
Q ss_pred CCceeeEeeeC
Q 027721 173 SMVPIDSCYLG 183 (219)
Q Consensus 173 ~~V~IDvc~L~ 183 (219)
.+|.|-++-+|
T Consensus 136 ~gi~i~~igvg 146 (200)
T 1v7p_C 136 DNILRFGIAVL 146 (200)
T ss_dssp TTEEEEEEEEC
T ss_pred CCCEEEEEEec
Confidence 99999999994
No 23
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=84.96 E-value=25 Score=32.80 Aligned_cols=149 Identities=13% Similarity=0.071 Sum_probs=88.8
Q ss_pred CeEEEEEeCCcccccc---CcccHHHHHHHHHHHHHHHHhcCCCCcEEEEEEcCCcceEEecCCCCCCCCCCCCC----c
Q 027721 14 SLVVVLLDTNPFFWSS---SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGR----M 86 (219)
Q Consensus 14 slLviIlD~np~~W~~---~~~~l~~~l~~llvFlNahL~~~~~N~vaVia~~~~~~~~LYp~~~~~~~~~~~~~----~ 86 (219)
.-++++||+++.=-.. .+--|..+.+.+..|+..-+..+...+|.||..+..... -| .. .+++.+ .
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~--~p--lt---~d~~y~~i~vl 80 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTD--NP--LS---GGDQYQNITVH 80 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCB--ST--TC---TTTCSTTEEEE
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCC--Cc--cc---cccCCCceEEe
Confidence 5799999998864332 234688888999999998888999999999998766421 11 11 000000 0
Q ss_pred hh---HHHHHHHHHHHHHHhhhhcCCCCCCccccccchhhHHHHHHHHHhhhhccCCCCC-CceEEEEecCCCCchhhhH
Q 027721 87 PS---LCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHP-QPRILCLQGSPDGPEQYVA 162 (219)
Q Consensus 87 ~~---~~~~v~~~l~~li~~~~~~~~~~~~~~~~~s~LagALs~ALCyINR~~~~~~~~~-~~RILvis~S~d~~~QYi~ 162 (219)
.. ....+++.|.+.+ . .+ ...+.+..||..|.-.+.+.... .+. +.||++++-..+..+ ...
T Consensus 81 ~~l~~~~~~~l~~l~~~l----~---~~----~~~t~i~~al~~A~~~l~~~~~~--~k~~~krIiLlTDg~~~~~-~~~ 146 (565)
T 1jey_B 81 RHLMLPDFDLLEDIESKI----Q---PG----SQQADFLDALIVSMDVIQHETIG--KKFEKRHIEIFTDLSSRFS-KSQ 146 (565)
T ss_dssp EEEECCCHHHHHHHHTTC----C---CC----SSCCCHHHHHHHHHHHHHHHSSS--SCCSEEEEEEECCCCSCCC-CTT
T ss_pred ecCCCCCHHHHHHHHhhc----c---CC----CccccHHHHHHHHHHHHHHHhhc--ccccccEEEEEeCCCCCCC-HHH
Confidence 00 0112333333311 1 10 12456888888777666443211 123 468999995544322 235
Q ss_pred HHHHHHHhhhCCceee-EeeeC
Q 027721 163 IMNAIFSAQRSMVPID-SCYLG 183 (219)
Q Consensus 163 lMN~iFaAqK~~V~ID-vc~L~ 183 (219)
+...+=-|++.+|.|+ +.-+|
T Consensus 147 ~~~~a~~l~~~gI~i~~vig~g 168 (565)
T 1jey_B 147 LDIIIHSLKKCDISLQFFLPFS 168 (565)
T ss_dssp HHHHHHHHHHTTEEEEEEESSC
T ss_pred HHHHHHHHHhcCcEEEEEeccC
Confidence 5667888999999999 66564
No 24
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=84.46 E-value=11 Score=29.08 Aligned_cols=148 Identities=12% Similarity=0.041 Sum_probs=83.3
Q ss_pred CCCeEEEEEeCCccccccCcccHHHHHHHHHHHHHHHHhcCCCCcEEEEEEcCCcceEEecCCCCCCCCCCCCCchhHHH
Q 027721 12 DVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCA 91 (219)
Q Consensus 12 ~~slLviIlD~np~~W~~~~~~l~~~l~~llvFlNahL~~~~~N~vaVia~~~~~~~~LYp~~~~~~~~~~~~~~~~~~~ 91 (219)
.+.-++++||++.--.+. .+..+-..+..|++.. .....++.||..+....++++|....
T Consensus 4 ~~~~vv~vlD~SgSM~~~---~~~~~k~~~~~~~~~~--~~~~~~v~lv~f~~~~~~~~~~~~~~--------------- 63 (189)
T 2x31_A 4 SDRVLIFAVDASGSAAVA---RLSEAKGAVELLLGRA--YAARDHVSLITFRGTAAQVLLQPSRS--------------- 63 (189)
T ss_dssp SCCEEEEEEECCTTSCC-----CHHHHHHHHHHHHHS--CTTTSCCCEEEESBSCCCBCTTTCSC---------------
T ss_pred CCeEEEEEEECCCCCCch---HHHHHHHHHHHHHHHh--cCCCcEEEEEEECCCCceEecCCCCC---------------
Confidence 456789999998654222 3444445555555332 47788999999876555666664321
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCccccccchhhHHHHHHHHHhhhhccCCCCCCceEEEEecCCC-CchhhhH--------
Q 027721 92 TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPD-GPEQYVA-------- 162 (219)
Q Consensus 92 ~v~~~l~~li~~~~~~~~~~~~~~~~~s~LagALs~ALCyINR~~~~~~~~~~~RILvis~S~d-~~~QYi~-------- 162 (219)
.+.+.+.+..-.. ...+.+..||..|+-.+.+..+ .....+|++++-..+ ....+-+
T Consensus 64 --~~~~~~~i~~l~~---------~g~T~~~~al~~a~~~l~~~~~---~~~~~~ivliTDG~~~~~~~~~~~~~~~~~~ 129 (189)
T 2x31_A 64 --LTQTKRQLQGLPG---------GGGTPLASGMEMAMVTAKQARS---RGMTPTIALLTDGRGNIALDGTANRELAGEQ 129 (189)
T ss_dssp --HHHHHHHHHHCCC---------CBCCCCHHHHHHHHHHHHTCTT---TCSSEEEEECCBSCCSSCCTHHHHHGGGTCC
T ss_pred --HHHHHHHHhcCCC---------CCCCCHHHHHHHHHHHHHhccC---CCCceEEEEECCCCCCCCCCccccccchhHH
Confidence 2334444433211 1256788899988877766422 234567777874432 2211100
Q ss_pred HHHHHHHhhhCCceeeEeeeCCCCchhhhhh
Q 027721 163 IMNAIFSAQRSMVPIDSCYLGAQNSAFLQQC 193 (219)
Q Consensus 163 lMN~iFaAqK~~V~IDvc~L~~~~s~fLQQA 193 (219)
+...+-.+++.+|.|-++-+|..+..+|++.
T Consensus 130 ~~~~~~~~~~~gi~v~~ig~g~~~~~~L~~i 160 (189)
T 2x31_A 130 ATKVARAIRASGMPAVIIDTAMRPNPALVDL 160 (189)
T ss_dssp CEEEEECTGGGGSCCTHHHHHHSSCSSSCST
T ss_pred HHHHHHHHHHcCCeEEEEecCCCCHHHHHHH
Confidence 0111223456778887777765566788877
No 25
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=81.49 E-value=4.9 Score=31.18 Aligned_cols=140 Identities=9% Similarity=0.072 Sum_probs=68.6
Q ss_pred eEEEEEeCCccccccCcccHHHHHHHHHHHHHHHHhcCCC-CcEEEEEEcCCcceEEecCCCCCCCCCCCCCchhHHHHH
Q 027721 15 LVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQL-NQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATL 93 (219)
Q Consensus 15 lLviIlD~np~~W~~~~~~l~~~l~~llvFlNahL~~~~~-N~vaVia~~~~~~~~LYp~~~~~~~~~~~~~~~~~~~~v 93 (219)
=++++||.+.---. ..|..+.+.+..+++.. ... -+++||..+.. .+..+|-.. +.+
T Consensus 4 divfvlD~S~Sm~~---~~~~~~k~~~~~~~~~l---~~~~~rv~vv~fs~~-~~~~~~l~~-------------~~~-- 61 (179)
T 1mjn_A 4 DLVFLFDGSMSLQP---DEFQKILDFMKDVMKKC---SNTSYQFAAVQFSTS-YKTEFDFSD-------------YVK-- 61 (179)
T ss_dssp EEEEEEECBTTCCH---HHHHHHHHHHHHHHHHT---TTSSEEEEEEEESSS-EEEEECHHH-------------HHH--
T ss_pred cEEEEEeCCCCCCH---HHHHHHHHHHHHHHHHh---CCCCeEEEEEEECCc-eeEEEcCcc-------------cCC--
Confidence 47899998643211 12444444454555542 333 38999988654 555665221 000
Q ss_pred HHHHHHHHHhhhhcCCCCCCccccccchhhHHHHHHHHHhhhhccCCCCCCceEEEEecCCCC-chhhhHHHHHHHHhhh
Q 027721 94 LQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDG-PEQYVAIMNAIFSAQR 172 (219)
Q Consensus 94 ~~~l~~li~~~~~~~~~~~~~~~~~s~LagALs~ALCyINR~~~~~~~~~~~RILvis~S~d~-~~QYi~lMN~iFaAqK 172 (219)
.+.+.+++..-... ...+.+..||..|+-.+-+..+...+.....|++++-+... .... +++
T Consensus 62 ~~~~~~~~~~i~~~--------~g~T~~~~aL~~a~~~~~~~~~g~r~~~~~~iillTDG~~~~~~~~---------~~~ 124 (179)
T 1mjn_A 62 RKDPDALLKHVKHM--------LLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGNI---------DAA 124 (179)
T ss_dssp HCCHHHHHTTCCCC--------CBCCCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCSSCSCC---------GGG
T ss_pred HHHHHHHHHhcccC--------CCCChHHHHHHHHHHHhcccccCCCCCCCeEEEEEcCCCCCCCcch---------HHH
Confidence 01223333321111 12456777777776432221111112333445556643321 1111 356
Q ss_pred CCceeeEeeeCCCCc-----hhhhhh
Q 027721 173 SMVPIDSCYLGAQNS-----AFLQQC 193 (219)
Q Consensus 173 ~~V~IDvc~L~~~~s-----~fLQQA 193 (219)
.+|.|-++-+|.... ..|++.
T Consensus 125 ~~i~i~~igvG~~~~~~~~~~~L~~i 150 (179)
T 1mjn_A 125 KDIIRYIIGIGKHFQTKESQETLHKF 150 (179)
T ss_dssp TTSEEEEEEESGGGCSHHHHHTTGGG
T ss_pred CCCEEEEEEccccccccccHHHHHHH
Confidence 799999999975432 456655
No 26
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=73.23 E-value=3.1 Score=42.43 Aligned_cols=151 Identities=9% Similarity=0.041 Sum_probs=80.6
Q ss_pred CCeEEEEEeCCccccccCcccHHHHHHHHHHHHHHHHhcCCCCcEEEEEEcCCcceEEecCCCCCCCCCCCCCchhHHHH
Q 027721 13 VSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCAT 92 (219)
Q Consensus 13 ~slLviIlD~np~~W~~~~~~l~~~l~~llvFlNahL~~~~~N~vaVia~~~~~~~~LYp~~~~~~~~~~~~~~~~~~~~ 92 (219)
+-=++++||.+----. ..|.++.+.+..|+..+- ...-+++||..+.. .+..+|-..... ..
T Consensus 130 ~~DIvfvlD~SgSm~~---~~f~~~k~fv~~lv~~~~--~~~~rVglV~Fs~~-~~~~~~lt~~~~----~~-------- 191 (1095)
T 3k6s_A 130 EQDIVFLIDGSGSISS---RNFATMMNFVRAVISQFQ--RPSTQFSLMQFSNK-FQTHFTFEEFRR----SS-------- 191 (1095)
T ss_dssp CEEEEEEEECCTTSCS---HHHHHHHHHHHHHHHSSC--SSSEEEEEEEESSS-EEEEECSHHHHS----CS--------
T ss_pred CccEEEEEcCCCCCCh---hHHHHHHHHHHHHHHhcc--ccccEEEEEEECCe-EEEEecCcccCC----HH--------
Confidence 3458999999643221 224444444444444322 33458999998664 666776432000 00
Q ss_pred HHHHHHHHHHhhhhcCCCCCCccccccchhhHHHHHHHHHhhhhccCCCCCCceEEEEecCCCCchhhhHHHHHHHHhhh
Q 027721 93 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQR 172 (219)
Q Consensus 93 v~~~l~~li~~~~~~~~~~~~~~~~~s~LagALs~ALCyINR~~~~~~~~~~~RILvis~S~d~~~QYi~lMN~iFaAqK 172 (219)
.+.+.++.- ... ...+.++.||..|+..+-+..+...+..+..|++++-+..... -..+..++-.|++
T Consensus 192 ---~l~~ai~~i---~~~-----gG~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG~~~~d-~~~~~~~a~~~r~ 259 (1095)
T 3k6s_A 192 ---NPLSLLASV---HQL-----QGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGD-SLDYKDVIPMADA 259 (1095)
T ss_dssp ---CGGGGTTTC---CCC-----CSCBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEESSCCBSC-SSCHHHHHHHHHH
T ss_pred ---HHHHHHhhh---hcc-----cCCChHHHHHHHHHHhhccccccCCCCCCeEEEEEeCCCcCCC-chhHHHHHHHHHH
Confidence 011111111 010 1256788888888776643222222233445666665443211 1234667778899
Q ss_pred CCceeeEeeeCCC-----Cchhhhhh
Q 027721 173 SMVPIDSCYLGAQ-----NSAFLQQC 193 (219)
Q Consensus 173 ~~V~IDvc~L~~~-----~s~fLQQA 193 (219)
.+|.|-++-+|.. +...|++.
T Consensus 260 ~GI~i~aIGVG~~~~~~~d~~eL~~I 285 (1095)
T 3k6s_A 260 AGIIRYAIGVGLAFQNRNSWKELNDI 285 (1095)
T ss_dssp HCEEECCEEBSSGGGSTTSSHHHHTT
T ss_pred CCCEEEEEecccccccccCHHHHHHH
Confidence 9999999999854 45677766
No 27
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=66.51 E-value=14 Score=31.37 Aligned_cols=97 Identities=18% Similarity=0.030 Sum_probs=60.3
Q ss_pred CCCCeEEEEEeCCccccccCcccHHHHHHHHHHHHHHHHhcCCCCcEEEEEEcCCc--ce-EEecCCCCCCCCCCCCCch
Q 027721 11 DDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS--CD-YVYDSSSTGNQSVGNGRMP 87 (219)
Q Consensus 11 ~~~slLviIlD~np~~W~~~~~~l~~~l~~llvFlNahL~~~~~N~vaVia~~~~~--~~-~LYp~~~~~~~~~~~~~~~ 87 (219)
+.|--++++||++.--.. .|..+-..+.-++.+.-.-...++|+||...... .. .+-|-.....
T Consensus 132 ~~~~~vvfLVDtSgSM~~----kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~~~~ll~pfT~~~~--------- 198 (242)
T 3rag_A 132 EVALHLVVCLDTSASMRD----KIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEEATRLVQPFSSEVN--------- 198 (242)
T ss_dssp HSCEEEEEEEECSGGGTT----THHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTCSCEEEEEEESSCC---------
T ss_pred cCCCCEEEEEECcccHHH----HHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCccceeecCCCCChHH---------
Confidence 356678999999876543 3666666666666654444568999999987653 22 2313221110
Q ss_pred hHHHHHHHHHHHHHHhhhhcCCCCCCccccccchhhHHHHHHHHHhhhhcc
Q 027721 88 SLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRS 138 (219)
Q Consensus 88 ~~~~~v~~~l~~li~~~~~~~~~~~~~~~~~s~LagALs~ALCyINR~~~~ 138 (219)
+...+.++ . . ...++++.||-.|+-++.|..|+
T Consensus 199 -----~~~~l~~L-----~--a------gG~Tplg~AL~~A~~~~~~~~~~ 231 (242)
T 3rag_A 199 -----VAALEAEL-----V--A------RGGTPTGPAIDHAADLLLSHARN 231 (242)
T ss_dssp -----HHHHHHHC-----C--C------CSCCCHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHhhC-----C--C------CCCCcHHHHHHHHHHHHHHHhhc
Confidence 12222222 1 1 13677999999999999887765
No 28
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=23.50 E-value=2e+02 Score=28.18 Aligned_cols=60 Identities=15% Similarity=0.174 Sum_probs=40.0
Q ss_pred cccchhhHHHHHHHHHhhhhccCCCCCCceEEEEecCCC-----------Cc---------hhhhH-----HHHHHHHhh
Q 027721 117 ACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPD-----------GP---------EQYVA-----IMNAIFSAQ 171 (219)
Q Consensus 117 ~~s~LagALs~ALCyINR~~~~~~~~~~~RILvis~S~d-----------~~---------~QYi~-----lMN~iFaAq 171 (219)
..+.+..||..|+..+.. ..+||+++.+++- .. .+|.. +-+..--|.
T Consensus 304 ~~~a~G~AL~~A~~lL~~--------~GGrI~~F~sg~pt~GpG~l~~r~~~~~~~~~ke~~~l~~~a~~fY~~la~~~~ 375 (810)
T 1pcx_A 304 TNFALGPALKSAYHLIGG--------VGGKIIVVSGTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCS 375 (810)
T ss_dssp CCCCHHHHHHHHHHHHTT--------TCEEEEEEESSCCCSSTTCCCC--------------------CCHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHh--------cCCEEEEEecCCCCCCCCcccccccccccCcccchhhhcccchHHHHHHHHHHH
Confidence 466789999999988864 2579999887541 00 00111 234455678
Q ss_pred hCCceeeEeeeCC
Q 027721 172 RSMVPIDSCYLGA 184 (219)
Q Consensus 172 K~~V~IDvc~L~~ 184 (219)
+.+|.||++..+.
T Consensus 376 ~~gi~VDlF~~s~ 388 (810)
T 1pcx_A 376 KVQITVDLFLASE 388 (810)
T ss_dssp HTTEEEEEEEEES
T ss_pred HCCeEEEEEEccC
Confidence 8999999999864
Done!