BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>027724
MAAAPCLHYGTPASIKIQQKQQPTRNWMMMQGLRRRNGKASKRVGVTNCSGNSGIEIGDF
IGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPE
TTLTKVYPVCPAHVGKQPIARWYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFL
ALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGLTQEGAA

High Scoring Gene Products

Symbol, full name Information P value
NdhN
NADH dehydrogenase-like complex N 		protein from Arabidopsis thaliana 6.9e-63

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  027724
        (219 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2161263 - symbol:NdhN "NADH dehydrogenase-like...   642  6.9e-63   1


>TAIR|locus:2161263 [details] [associations]
            symbol:NdhN "NADH dehydrogenase-like complex N"
            species:3702 "Arabidopsis thaliana" [GO:0016020 "membrane"
            evidence=IEA] [GO:0016655 "oxidoreductase activity, acting on
            NAD(P)H, quinone or similar compound as acceptor" evidence=IEA]
            [GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0009941
            "chloroplast envelope" evidence=IDA] [GO:0009535 "chloroplast
            thylakoid membrane" evidence=IDA;TAS] [GO:0009507 "chloroplast"
            evidence=IDA] [GO:0010258 "NADH dehydrogenase complex
            (plastoquinone) assembly" evidence=IMP] [GO:0010598 "NAD(P)H
            dehydrogenase complex (plastoquinone)" evidence=TAS] [GO:0009817
            "defense response to fungus, incompatible interaction"
            evidence=IDA] [GO:0000023 "maltose metabolic process" evidence=RCA]
            [GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0010207
            "photosystem II assembly" evidence=RCA] [GO:0016117 "carotenoid
            biosynthetic process" evidence=RCA] [GO:0016556 "mRNA modification"
            evidence=RCA] [GO:0019252 "starch biosynthetic process"
            evidence=RCA] [GO:0043085 "positive regulation of catalytic
            activity" evidence=RCA] InterPro:IPR020874 Pfam:PF11909
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009941 EMBL:AB019228
            GO:GO:0009817 GO:GO:0016655 GO:GO:0009535 GO:GO:0010598
            GO:GO:0010258 EMBL:AY080743 EMBL:AY113999 IPI:IPI00539659
            RefSeq:NP_200634.1 UniGene:At.20336 STRING:Q9LVM2 PRIDE:Q9LVM2
            EnsemblPlants:AT5G58260.1 GeneID:835938 KEGG:ath:AT5G58260
            TAIR:At5g58260 HOGENOM:HOG000238538 InParanoid:Q9LVM2 OMA:RPPHLGH
            PhylomeDB:Q9LVM2 ProtClustDB:CLSN2686091 ArrayExpress:Q9LVM2
            Genevestigator:Q9LVM2 Uniprot:Q9LVM2
        Length = 209

 Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
 Identities = 123/178 (69%), Positives = 137/178 (76%)

Query:    39 KASKRVGVTNCSGNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEXXXXXXXX 98
             K  +  GV  CS      I D+IGGDL+KPD+G+WL DVE+HKAIAIY PHE        
Sbjct:    37 KRRRSTGV-KCSS-----IADYIGGDLVKPDIGQWLQDVEEHKAIAIYAPHEGGYEGRYL 90

Query:    99 XXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIARWYFPPEVDYRLAALPPS 158
                        D+SARGLGDPETTL K YPVCPAH+GKQPIARWY+PPEVDYRLAALPPS
Sbjct:    91 NRLKMQGYYFLDISARGLGDPETTLLKNYPVCPAHLGKQPIARWYYPPEVDYRLAALPPS 150

Query:   159 AKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGLTQE 216
             AKGLVVW++EAKVLSKSELQFLALLP+LRP VRVIAECGNWRKF+WKPL EIA L  +
Sbjct:   151 AKGLVVWVLEAKVLSKSELQFLALLPSLRPNVRVIAECGNWRKFVWKPLAEIANLAAQ 208


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.434    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      219       200   0.00087  111 3  11 22  0.48    32
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  185 KB (2105 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.64u 0.09s 15.73t   Elapsed:  00:00:01
  Total cpu time:  15.64u 0.09s 15.73t   Elapsed:  00:00:01
  Start:  Sat May 11 06:32:17 2013   End:  Sat May 11 06:32:18 2013

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