Query 027724
Match_columns 219
No_of_seqs 59 out of 61
Neff 2.3
Searched_HMMs 46136
Date Fri Mar 29 14:13:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027724.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027724hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11909 NdhN: NADH-quinone ox 100.0 1.3E-85 2.8E-90 542.4 13.7 140 71-210 8-154 (154)
2 cd05797 Ribosomal_L10 Ribosoma 85.4 0.5 1.1E-05 37.5 1.6 26 162-187 105-130 (157)
3 PRK00099 rplJ 50S ribosomal pr 81.0 0.95 2.1E-05 36.7 1.7 26 162-187 106-131 (172)
4 PRK13361 molybdenum cofactor b 72.1 7.2 0.00016 34.5 4.7 60 60-122 67-130 (329)
5 TIGR02668 moaA_archaeal probab 68.9 11 0.00024 32.3 5.1 65 60-128 62-129 (302)
6 PF10902 DUF2693: Protein of u 67.9 2.3 4.9E-05 32.9 0.7 17 194-210 56-72 (83)
7 PF14085 DUF4265: Domain of un 67.2 15 0.00032 28.8 5.1 62 41-105 41-113 (117)
8 PRK00164 moaA molybdenum cofac 64.6 15 0.00032 32.0 5.1 63 60-123 71-135 (331)
9 TIGR02666 moaA molybdenum cofa 63.7 16 0.00034 32.0 5.1 59 60-121 65-127 (334)
10 TIGR03470 HpnH hopanoid biosyn 57.5 25 0.00053 31.3 5.3 60 57-117 75-135 (318)
11 cd02873 GH18_IDGF The IDGF's ( 51.2 9.2 0.0002 35.4 1.7 38 163-200 48-85 (413)
12 TIGR00290 MJ0570_dom MJ0570-re 50.2 38 0.00082 29.7 5.2 62 56-117 85-148 (223)
13 KOG2902 Dihydroorotase [Nucleo 49.2 3 6.4E-05 39.2 -1.8 52 145-196 121-174 (344)
14 PLN02951 Molybderin biosynthes 48.7 33 0.00072 31.5 4.8 60 60-122 112-175 (373)
15 TIGR02495 NrdG2 anaerobic ribo 48.6 47 0.001 26.3 5.1 62 59-124 67-130 (191)
16 TIGR03679 arCOG00187 arCOG0018 48.4 38 0.00081 28.8 4.8 62 56-117 86-149 (218)
17 cd01994 Alpha_ANH_like_IV This 46.1 50 0.0011 27.7 5.1 59 59-117 91-151 (194)
18 PF09328 Phytochelatin_C: Doma 43.8 9 0.00019 35.3 0.4 39 143-181 39-84 (264)
19 cd06544 GH18_narbonin Narbonin 42.9 15 0.00032 32.3 1.6 25 177-201 58-82 (253)
20 PF02579 Nitro_FeMo-Co: Dinitr 41.8 16 0.00035 25.6 1.4 32 77-111 49-80 (94)
21 PF15007 CEP44: Centrosomal sp 40.6 9.6 0.00021 31.6 0.1 35 93-127 5-40 (131)
22 PF01902 ATP_bind_4: ATP-bindi 39.8 60 0.0013 28.2 4.8 66 57-122 86-151 (218)
23 smart00775 LNS2 LNS2 domain. T 37.2 28 0.0006 28.0 2.3 31 96-126 34-67 (157)
24 TIGR00289 conserved hypothetic 36.7 78 0.0017 27.7 5.1 61 56-117 85-147 (222)
25 cd02414 jag_KH jag_K homology 36.0 35 0.00075 24.5 2.4 33 167-201 41-76 (77)
26 PF11455 DUF3018: Protein of 35.7 20 0.00044 26.8 1.2 25 95-119 6-30 (65)
27 PF01548 DEDD_Tnp_IS110: Trans 34.9 25 0.00055 26.6 1.6 52 68-119 33-84 (144)
28 cd02872 GH18_chitolectin_chito 34.4 29 0.00064 30.5 2.1 27 174-200 55-81 (362)
29 COG2083 Uncharacterized protei 34.1 45 0.00097 28.5 3.1 28 170-197 48-79 (140)
30 COG1057 NadD Nicotinic acid mo 32.2 26 0.00057 30.1 1.5 19 130-148 13-42 (197)
31 PLN00130 succinate dehydrogena 31.8 56 0.0012 29.5 3.4 80 58-146 57-140 (213)
32 KOG1838 Alpha/beta hydrolase [ 31.2 46 0.00099 32.2 3.0 84 81-173 126-213 (409)
33 PF08960 DUF1874: Domain of un 30.7 21 0.00046 28.7 0.6 53 111-178 40-96 (105)
34 COG0244 RplJ Ribosomal protein 30.2 40 0.00087 28.3 2.2 30 158-187 105-134 (175)
35 TIGR01689 EcbF-BcbF capsule bi 30.1 54 0.0012 26.3 2.8 24 97-120 32-55 (126)
36 TIGR02109 PQQ_syn_pqqE coenzym 30.0 1.3E+02 0.0029 26.4 5.4 55 60-116 59-116 (358)
37 smart00764 Citrate_ly_lig Citr 29.4 34 0.00074 28.7 1.7 25 170-194 39-64 (182)
38 PRK07152 nadD putative nicotin 29.3 32 0.00069 30.9 1.5 34 180-213 88-124 (342)
39 cd06344 PBP1_ABC_ligand_bindin 28.0 1.1E+02 0.0023 25.9 4.3 54 68-121 178-231 (332)
40 cd00379 Ribosomal_L10_P0 Ribos 27.9 39 0.00085 26.2 1.6 25 162-186 103-127 (155)
41 PRK00071 nadD nicotinic acid m 27.0 15 0.00033 30.2 -0.8 38 173-213 87-127 (203)
42 PF05822 UMPH-1: Pyrimidine 5' 26.5 24 0.00053 31.7 0.3 36 97-133 98-133 (246)
43 PF04784 DUF547: Protein of un 26.3 1.3E+02 0.0027 23.4 4.2 38 162-199 49-90 (117)
44 TIGR01482 SPP-subfamily Sucros 26.1 62 0.0013 25.7 2.5 36 97-133 23-58 (225)
45 cd04724 Tryptophan_synthase_al 25.9 86 0.0019 26.9 3.5 42 70-113 93-137 (242)
46 cd02165 NMNAT Nicotinamide/nic 25.3 32 0.0007 27.9 0.8 81 130-213 9-121 (192)
47 PRK10985 putative hydrolase; P 25.2 64 0.0014 27.8 2.6 39 81-119 58-101 (324)
48 PRK11713 16S ribosomal RNA met 25.0 96 0.0021 26.4 3.6 34 81-114 178-211 (234)
49 PRK08887 nicotinic acid mononu 24.8 18 0.00039 29.8 -0.8 16 130-145 12-35 (174)
50 PRK02797 4-alpha-L-fucosyltran 24.7 1.1E+02 0.0024 28.9 4.2 72 117-197 107-183 (322)
51 KOG0257 Kynurenine aminotransf 24.7 42 0.00091 32.8 1.5 21 168-188 185-205 (420)
52 PRK05301 pyrroloquinoline quin 24.6 1.7E+02 0.0037 26.1 5.3 57 59-116 67-125 (378)
53 PF11658 DUF3260: Protein of u 24.3 62 0.0013 32.4 2.6 26 69-94 384-411 (518)
54 PF04023 FeoA: FeoA domain; I 24.0 74 0.0016 21.8 2.3 41 151-195 2-42 (74)
55 TIGR00027 mthyl_TIGR00027 meth 24.0 2.5E+02 0.0053 24.6 6.0 125 71-198 71-199 (260)
56 cd01427 HAD_like Haloacid deha 23.9 49 0.0011 22.6 1.4 33 96-129 31-63 (139)
57 cd06346 PBP1_ABC_ligand_bindin 23.3 1.2E+02 0.0027 25.4 3.9 53 68-120 179-231 (312)
58 PRK00726 murG undecaprenyldiph 23.1 1.2E+02 0.0026 25.8 3.8 31 85-115 6-39 (357)
59 cd03413 CbiK_C Anaerobic cobal 22.6 2.3E+02 0.0049 21.7 4.9 50 67-117 41-103 (103)
60 cd00340 GSH_Peroxidase Glutath 22.6 2.2E+02 0.0049 21.9 5.0 21 158-179 130-150 (152)
61 PF04452 Methyltrans_RNA: RNA 21.8 1E+02 0.0022 26.0 3.1 33 82-114 176-208 (225)
62 PF09370 TIM-br_sig_trns: TIM- 21.7 86 0.0019 29.0 2.9 45 62-107 90-135 (268)
63 TIGR00482 nicotinate (nicotina 21.7 23 0.0005 29.1 -0.7 33 181-213 85-120 (193)
64 TIGR01351 adk adenylate kinase 21.6 1.8E+02 0.0039 23.6 4.5 43 151-196 70-112 (210)
65 PLN02486 aminoacyl-tRNA ligase 21.5 1.9E+02 0.0041 27.4 5.1 55 68-126 59-123 (383)
66 PF03944 Endotoxin_C: delta en 21.2 13 0.00028 29.5 -2.2 40 60-108 24-65 (143)
67 PRK06107 aspartate aminotransf 21.0 55 0.0012 29.0 1.4 29 167-195 178-206 (402)
68 cd02019 NK Nucleoside/nucleoti 20.9 1.3E+02 0.0028 20.7 3.0 30 164-196 34-63 (69)
69 PF14178 YppF: YppF-like prote 20.8 44 0.00095 24.9 0.7 24 60-83 32-55 (60)
70 TIGR03368 cellulose_yhjU cellu 20.6 79 0.0017 31.8 2.5 25 69-93 381-407 (518)
71 PLN02511 hydrolase 20.3 1.3E+02 0.0028 27.1 3.7 41 80-120 99-144 (388)
72 TIGR01359 UMP_CMP_kin_fam UMP- 20.1 1.3E+02 0.0029 23.3 3.2 33 164-196 78-112 (183)
No 1
>PF11909 NdhN: NADH-quinone oxidoreductase cyanobacterial subunit N; InterPro: IPR020874 NAD(P)H-quinone oxidoreductase (NDH-1) shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. It couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration. NDH-1 can be composed of about 15 different subunits, although different subcomplexes with different compositions have been identified which probably have different functions. This entry represents subunit N. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process, 0016020 membrane
Probab=100.00 E-value=1.3e-85 Score=542.39 Aligned_cols=140 Identities=57% Similarity=1.013 Sum_probs=138.2
Q ss_pred hhHHHHHHhcceeEEecCCCCCchhhhhhHhhhcCceEEEeccCCCCChhhhhhhcCCCCCCCCCCcce-------eEEe
Q 027724 71 GRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCPAHVGKQPI-------ARWY 143 (219)
Q Consensus 71 ~~FirDLEk~GaLAvy~PlEGG~EGRy~RRLRaaGY~t~~~SARGLGDpeayLt~vHGVRPPHLGKq~i-------~v~~ 143 (219)
.+|+|||||+||||||+|+||||||||+||||++||+|+++|||||||||+|||++|||||||||||+| +|||
T Consensus 8 ~~f~rdlEk~gaLavy~PlEGG~EgRy~RRLRa~GY~t~~~SArGLGD~~ayLt~~HGVRPpHLGk~~ig~~aavG~v~~ 87 (154)
T PF11909_consen 8 KKFIRDLEKSGALAVYAPLEGGYEGRYLRRLRAAGYRTLIISARGLGDPEAYLTKVHGVRPPHLGKQSIGRGAAVGEVYY 87 (154)
T ss_pred hHHHHHHHHcCceEEEcCCcCchhHHHHHHHHhcCceEEEecccCCCCHHHHHhccCCCCCCCCCccccccccccceeEE
Confidence 589999999999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred cCcchhhhhhcCCCCCcceEEEEEeceecCHHHHHHHHcCCCCCCCeEEEEEeCCeeeeeecchHHH
Q 027724 144 FPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEI 210 (219)
Q Consensus 144 vpP~v~yqL~~LPp~~KgLVLWiiEG~VLS~~EL~~L~~Lp~~ePrvKVVvEmGG~R~frWqPL~~~ 210 (219)
+||+++|||++|||++||||||||||||||+|||+||++||++||||||||||||||+||||||+++
T Consensus 88 ~pP~~~y~Le~Lp~~~KglvLWiiEG~vLS~~El~~L~~Lp~~ePrvKvVvE~Gg~R~~rW~pL~~~ 154 (154)
T PF11909_consen 88 VPPIVNYQLENLPPKSKGLVLWIIEGQVLSRQELEYLCNLPQREPRVKVVVEMGGDRSFRWQPLKEI 154 (154)
T ss_pred eCchhhhhHhhcCCCCCcEEEEEEeccccCHHHHHHHHhccccCCCeEEEEEeCCceeEEeeecccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999875
No 2
>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in
Probab=85.41 E-value=0.5 Score=37.55 Aligned_cols=26 Identities=35% Similarity=0.452 Sum_probs=22.3
Q ss_pred eEEEEEeceecCHHHHHHHHcCCCCC
Q 027724 162 LVVWIIEAKVLSKSELQFLALLPTLR 187 (219)
Q Consensus 162 LVLWiiEG~VLS~~EL~~L~~Lp~~e 187 (219)
+.-=++||++||.+|++.|++||++|
T Consensus 105 ~~gg~~eg~~l~~~~v~~la~LPs~e 130 (157)
T cd05797 105 IKGGVVEGKVLDAEEVKALAKLPSRE 130 (157)
T ss_pred EEEEEECCEecCHHHHHHHhcCCCHH
Confidence 34457899999999999999999865
No 3
>PRK00099 rplJ 50S ribosomal protein L10; Reviewed
Probab=81.04 E-value=0.95 Score=36.73 Aligned_cols=26 Identities=38% Similarity=0.414 Sum_probs=22.2
Q ss_pred eEEEEEeceecCHHHHHHHHcCCCCC
Q 027724 162 LVVWIIEAKVLSKSELQFLALLPTLR 187 (219)
Q Consensus 162 LVLWiiEG~VLS~~EL~~L~~Lp~~e 187 (219)
+.-=++||++||.+|++.|++||.++
T Consensus 106 l~gg~~eg~~l~~~~i~~la~LPs~~ 131 (172)
T PRK00099 106 IKGGAIEGKVLDAEEVKALAKLPSRE 131 (172)
T ss_pred EEEEEECCEEcCHHHHHHHhcCCCHH
Confidence 33357899999999999999999864
No 4
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=72.06 E-value=7.2 Score=34.48 Aligned_cols=60 Identities=22% Similarity=0.373 Sum_probs=45.5
Q ss_pred cccCc-ccCcchhhHHHHHHhcce---eEEecCCCCCchhhhhhHhhhcCceEEEeccCCCCChhhh
Q 027724 60 FIGGD-LLKPDLGRWLSDVEKHKA---IAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETT 122 (219)
Q Consensus 60 ~iggd-l~~~d~~~FirDLEk~Ga---LAvy~PlEGG~EGRy~RRLRaaGY~t~~~SARGLGDpeay 122 (219)
|.||+ |+..|+..+++.+.+.+- ++|- --|-.-.++.++|+.+|...+.+|--++ |++.|
T Consensus 67 ~tGGEPllr~dl~~li~~i~~~~~l~~i~it--TNG~ll~~~~~~L~~aGl~~v~ISlDs~-~~e~~ 130 (329)
T PRK13361 67 LTGGEPLVRRGCDQLVARLGKLPGLEELSLT--TNGSRLARFAAELADAGLKRLNISLDTL-RPELF 130 (329)
T ss_pred EECcCCCccccHHHHHHHHHhCCCCceEEEE--eChhHHHHHHHHHHHcCCCeEEEEeccC-CHHHh
Confidence 34554 778899999999988764 4443 3354556789999999999999999887 67766
No 5
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=68.86 E-value=11 Score=32.28 Aligned_cols=65 Identities=25% Similarity=0.368 Sum_probs=48.1
Q ss_pred cccCc-ccCcchhhHHHHHHhcce--eEEecCCCCCchhhhhhHhhhcCceEEEeccCCCCChhhhhhhcCC
Q 027724 60 FIGGD-LLKPDLGRWLSDVEKHKA--IAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYP 128 (219)
Q Consensus 60 ~iggd-l~~~d~~~FirDLEk~Ga--LAvy~PlEGG~EGRy~RRLRaaGY~t~~~SARGLGDpeayLt~vHG 128 (219)
|.||+ ++..|+.++++.+.+.|- ++|.+ -|=.-.++..+|+.+|...+.+|--|+ |++.|- .++|
T Consensus 62 ~tGGEPll~~~l~~iv~~l~~~g~~~v~i~T--NG~ll~~~~~~l~~~g~~~v~iSld~~-~~~~~~-~i~~ 129 (302)
T TIGR02668 62 ITGGEPLLRKDLIEIIRRIKDYGIKDVSMTT--NGILLEKLAKKLKEAGLDRVNVSLDTL-DPEKYK-KITG 129 (302)
T ss_pred EECcccccccCHHHHHHHHHhCCCceEEEEc--CchHHHHHHHHHHHCCCCEEEEEecCC-CHHHhh-hccC
Confidence 45665 678899999999988873 44443 343445788899999999999999997 666654 4554
No 6
>PF10902 DUF2693: Protein of unknown function (DUF2693); InterPro: IPR024401 This family of proteins is found in bacteria and bacteriophages. Its function is unknown.
Probab=67.92 E-value=2.3 Score=32.88 Aligned_cols=17 Identities=29% Similarity=0.546 Sum_probs=14.6
Q ss_pred EEeCCeeeeeecchHHH
Q 027724 194 AECGNWRKFMWKPLKEI 210 (219)
Q Consensus 194 vEmGG~R~frWqPL~~~ 210 (219)
+|.++||+|+|..|-++
T Consensus 56 ve~~~WRSFk~dnLIsV 72 (83)
T PF10902_consen 56 VEKKGWRSFKIDNLISV 72 (83)
T ss_pred eccCceeeeeheeEEEE
Confidence 69999999999987554
No 7
>PF14085 DUF4265: Domain of unknown function (DUF4265)
Probab=67.20 E-value=15 Score=28.80 Aligned_cols=62 Identities=24% Similarity=0.223 Sum_probs=47.9
Q ss_pred cceeeEEeecCCccccccccccCcccCcchhhHHHHHHhcce---------eEEecCCCCCchh--hhhhHhhhcC
Q 027724 41 SKRVGVTNCSGNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKA---------IAIYTPHEGGYEG--RYLNRLRYLG 105 (219)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~d~iggdl~~~d~~~FirDLEk~Ga---------LAvy~PlEGG~EG--Ry~RRLRaaG 105 (219)
.....+++.|||+.+=+--.-.+. -|+.+.+..|++.|| +||=+|..-+|+. .|+.+++.+|
T Consensus 41 ~~~~~~v~~sGnsTiRv~~~~~~~---~~~~~v~~~l~~lG~~~E~~~~~~lav~VP~~~~~~~i~~~L~~~~e~g 113 (117)
T PF14085_consen 41 LWFQKVVESSGNSTIRVIFDDPGP---DDIEAVREELEALGCTVEGFSERMLAVDVPPSVDFDAIKDYLDRGEEQG 113 (117)
T ss_pred EEEEEEEecCCCEEEEEEEcCCcc---hhHHHHHHHHHHcCCeEEccCCCEEEEEECCCCCHHHHHHHHHhhhhcC
Confidence 345667777888877665555554 688999999999987 7899999998885 6777777776
No 8
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=64.57 E-value=15 Score=32.04 Aligned_cols=63 Identities=24% Similarity=0.310 Sum_probs=43.9
Q ss_pred cccCc-ccCcchhhHHHHHHhc-ceeEEecCCCCCchhhhhhHhhhcCceEEEeccCCCCChhhhh
Q 027724 60 FIGGD-LLKPDLGRWLSDVEKH-KAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTL 123 (219)
Q Consensus 60 ~iggd-l~~~d~~~FirDLEk~-GaLAvy~PlEGG~EGRy~RRLRaaGY~t~~~SARGLGDpeayL 123 (219)
|.||+ ++..|+.++++.+.+. |-.-|..---|=.-.++..+|+.+|...+.+|.-++ |++.|-
T Consensus 71 ~tGGEPll~~~l~~li~~i~~~~~~~~i~itTNG~ll~~~~~~L~~agl~~i~ISlds~-~~e~~~ 135 (331)
T PRK00164 71 LTGGEPLLRKDLEDIIAALAALPGIRDLALTTNGYLLARRAAALKDAGLDRVNVSLDSL-DPERFK 135 (331)
T ss_pred EECCCCcCccCHHHHHHHHHhcCCCceEEEEcCchhHHHHHHHHHHcCCCEEEEEeccC-CHHHhc
Confidence 44565 5678999999998776 323333333343345788999999999999999886 566553
No 9
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=63.65 E-value=16 Score=32.03 Aligned_cols=59 Identities=31% Similarity=0.429 Sum_probs=42.1
Q ss_pred cccCc-ccCcchhhHHHHHHhc-ce--eEEecCCCCCchhhhhhHhhhcCceEEEeccCCCCChhh
Q 027724 60 FIGGD-LLKPDLGRWLSDVEKH-KA--IAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPET 121 (219)
Q Consensus 60 ~iggd-l~~~d~~~FirDLEk~-Ga--LAvy~PlEGG~EGRy~RRLRaaGY~t~~~SARGLGDpea 121 (219)
|.||+ |+..|+.++++.+.+. |. +.|.+ -|=.-.++..+|+.+|...+.+|--|+ |++.
T Consensus 65 ltGGEPll~~~l~~li~~i~~~~gi~~v~itT--NG~ll~~~~~~L~~~gl~~v~ISld~~-~~~~ 127 (334)
T TIGR02666 65 LTGGEPLLRKDLVELVARLAALPGIEDIALTT--NGLLLARHAKDLKEAGLKRVNVSLDSL-DPER 127 (334)
T ss_pred EECccccccCCHHHHHHHHHhcCCCCeEEEEe--CchhHHHHHHHHHHcCCCeEEEecccC-CHHH
Confidence 34443 6788999999998774 43 44433 343445688999999999999998887 4443
No 10
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=57.50 E-value=25 Score=31.31 Aligned_cols=60 Identities=18% Similarity=0.334 Sum_probs=46.1
Q ss_pred ccccccCc-ccCcchhhHHHHHHhcceeEEecCCCCCchhhhhhHhhhcCceEEEeccCCCC
Q 027724 57 IGDFIGGD-LLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLG 117 (219)
Q Consensus 57 ~~d~iggd-l~~~d~~~FirDLEk~GaLAvy~PlEGG~EGRy~RRLRaaGY~t~~~SARGLG 117 (219)
.=.|.||+ |+.+|+.++++-+.+.|. -++.---|-.-.+-..+|..+|+.++.+|--|+-
T Consensus 75 ~V~i~GGEPLL~pdl~eiv~~~~~~g~-~v~l~TNG~ll~~~~~~l~~~~~~~i~VSLDG~~ 135 (318)
T TIGR03470 75 VVSIPGGEPLLHPEIDEIVRGLVARKK-FVYLCTNALLLEKKLDKFEPSPYLTFSVHLDGLR 135 (318)
T ss_pred EEEEeCccccccccHHHHHHHHHHcCC-eEEEecCceehHHHHHHHHhCCCcEEEEEEecCc
Confidence 34567887 788999999999988774 4555555655556677899999999999998874
No 11
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=51.23 E-value=9.2 Score=35.35 Aligned_cols=38 Identities=24% Similarity=0.273 Sum_probs=29.4
Q ss_pred EEEEEeceecCHHHHHHHHcCCCCCCCeEEEEEeCCee
Q 027724 163 VVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWR 200 (219)
Q Consensus 163 VLWiiEG~VLS~~EL~~L~~Lp~~ePrvKVVvEmGG~R 200 (219)
|.++-+...+-+.++..|..|-++.|.+||++-+|||-
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~lk~~~p~lKvllSiGGw~ 85 (413)
T cd02873 48 IKSLNEDLDLDKSHYRAITSLKRKYPHLKVLLSVGGDR 85 (413)
T ss_pred EEecCcccchhhhHHHHHHHHHhhCCCCeEEEeecCCC
Confidence 33433334445678899999999999999999999985
No 12
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=50.22 E-value=38 Score=29.70 Aligned_cols=62 Identities=10% Similarity=0.118 Sum_probs=50.5
Q ss_pred cccccccCcccCcchhhHHHHHHhcceeEEecCCCCCchhhhhhHhhhcCceEEEe--ccCCCC
Q 027724 56 EIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDL--SARGLG 117 (219)
Q Consensus 56 ~~~d~iggdl~~~d~~~FirDLEk~GaLAvy~PlEGG~EGRy~RRLRaaGY~t~~~--SARGLG 117 (219)
|+--.+=||+.--+...+++.+=+.=-|-.+.||-+=-..-|++.+-+.|+++..+ +|.||+
T Consensus 85 gv~~vv~GdI~s~~qr~~~e~v~~~lgl~~~~PLW~~~~~~ll~e~i~~G~~aiIv~v~a~gL~ 148 (223)
T TIGR00290 85 DVEAVVFGAIYSEYQKTRIERVCRELGLKSFAPLWHRDPEKLMEEFVEEKFEARIIAVAAEGLD 148 (223)
T ss_pred CCCEEEECCcccHHHHHHHHHHHHhcCCEEeccccCCCHHHHHHHHHHcCCeEEEEEEecCCCC
Confidence 45556778888888888888776666688899999988888999999999999995 456665
No 13
>KOG2902 consensus Dihydroorotase [Nucleotide transport and metabolism]
Probab=49.17 E-value=3 Score=39.20 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=38.3
Q ss_pred CcchhhhhhcCCCCCcceEEEEEeceecCHHH--HHHHHcCCCCCCCeEEEEEe
Q 027724 145 PPEVDYRLAALPPSAKGLVVWIIEAKVLSKSE--LQFLALLPTLRPKVRVIAEC 196 (219)
Q Consensus 145 pP~v~yqL~~LPp~~KgLVLWiiEG~VLS~~E--L~~L~~Lp~~ePrvKVVvEm 196 (219)
|-.-.-|=+|+|=+-.|=|-=.++|+|+..++ |..|-.|-++.|++|||.|-
T Consensus 121 Pvf~aMqe~nm~LnvHGEvpps~D~~Vf~aE~~Flptll~LhqrfP~LKivlEH 174 (344)
T KOG2902|consen 121 PVFEAMQEQNMPLNVHGEVPPSIDGHVFDAEKIFLPTLLQLHQRFPQLKIVLEH 174 (344)
T ss_pred HHHHHHHHcCceEEecCCCCCccCCceecchhhhHHHHHHHHHhCccceeHHHh
Confidence 33444555666666666565668889998877 56778899999999999983
No 14
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=48.69 E-value=33 Score=31.47 Aligned_cols=60 Identities=27% Similarity=0.330 Sum_probs=44.1
Q ss_pred cccCc-ccCcchhhHHHHHHhc-ce--eEEecCCCCCchhhhhhHhhhcCceEEEeccCCCCChhhh
Q 027724 60 FIGGD-LLKPDLGRWLSDVEKH-KA--IAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETT 122 (219)
Q Consensus 60 ~iggd-l~~~d~~~FirDLEk~-Ga--LAvy~PlEGG~EGRy~RRLRaaGY~t~~~SARGLGDpeay 122 (219)
|.||+ ++..|+.++++.+.+. |- ++|.+ -|=.-.+...+|+.+|-..+++|--++ |++.|
T Consensus 112 ~tGGEPllr~dl~eli~~l~~~~gi~~i~itT--NG~lL~~~~~~L~~aGld~VnISLDsl-~~e~~ 175 (373)
T PLN02951 112 LTGGEPTLRKDIEDICLQLSSLKGLKTLAMTT--NGITLSRKLPRLKEAGLTSLNISLDTL-VPAKF 175 (373)
T ss_pred EECCCCcchhhHHHHHHHHHhcCCCceEEEee--CcchHHHHHHHHHhCCCCeEEEeeccC-CHHHH
Confidence 55665 5688999999988775 53 34432 332345678999999999999999998 78877
No 15
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=48.56 E-value=47 Score=26.33 Aligned_cols=62 Identities=21% Similarity=0.338 Sum_probs=43.6
Q ss_pred ccccCc-ccCcchhhHHHHHHhcceeEEecCCCCCchhhhhhHhhhcCc-eEEEeccCCCCChhhhhh
Q 027724 59 DFIGGD-LLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGY-YFLDLSARGLGDPETTLT 124 (219)
Q Consensus 59 d~iggd-l~~~d~~~FirDLEk~GaLAvy~PlEGG~EGRy~RRLRaaGY-~t~~~SARGLGDpeayLt 124 (219)
.|.||| ++.+|+-.+++.+.+.| +.+..-. .|..-++..++..+|. .++.+|-.| +.+.|..
T Consensus 67 ~~sGGEPll~~~l~~li~~~~~~g-~~v~i~T-Ng~~~~~l~~l~~~g~~~~v~isl~~--~~~~~~~ 130 (191)
T TIGR02495 67 VITGGEPTLQAGLPDFLRKVRELG-FEVKLDT-NGSNPRVLEELLEEGLVDYVAMDVKA--PPEKYPE 130 (191)
T ss_pred EEECCcccCcHhHHHHHHHHHHCC-CeEEEEe-CCCCHHHHHHHHhcCCCcEEEEeccC--ChHHHHH
Confidence 355777 45688999999999987 3444433 4455677888888885 678888887 4555554
No 16
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=48.45 E-value=38 Score=28.78 Aligned_cols=62 Identities=19% Similarity=0.349 Sum_probs=51.1
Q ss_pred cccccccCcccCcchhhHHHHHHhcceeEEecCCCCCchhhhhhHhhhcCceEEEe--ccCCCC
Q 027724 56 EIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDL--SARGLG 117 (219)
Q Consensus 56 ~~~d~iggdl~~~d~~~FirDLEk~GaLAvy~PlEGG~EGRy~RRLRaaGY~t~~~--SARGLG 117 (219)
|+--.+=||+.--+-..++..+.+..-|-+++||-+=-..=+.+.+...|++++++ ++.||+
T Consensus 86 g~~~vv~G~i~sd~~~~~~e~v~~~~gl~~~~PLw~~~~~el~~~~~~~G~~~~i~~v~~~~l~ 149 (218)
T TIGR03679 86 GVEGIVTGAIASRYQKSRIERICEELGLKVFAPLWGRDQEEYLRELVERGFRFIIVSVSAYGLD 149 (218)
T ss_pred CCCEEEECCcccHhHHHHHHHHHHhCCCeEEeehhcCCHHHHHHHHHHCCCEEEEEEEecCCCC
Confidence 44455667777666788999999999999999999988888999999999999885 455665
No 17
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=46.12 E-value=50 Score=27.70 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=46.1
Q ss_pred ccccCcccCcchhhHHHHHHhcceeEEecCCCCCchhhhhhHhhhcCceEEEe--ccCCCC
Q 027724 59 DFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDL--SARGLG 117 (219)
Q Consensus 59 d~iggdl~~~d~~~FirDLEk~GaLAvy~PlEGG~EGRy~RRLRaaGY~t~~~--SARGLG 117 (219)
-.+=||+.-=+...|+.++=+.=-|-.+.||-+=-..-|++.+-+.|++++++ +|.||+
T Consensus 91 ~vv~G~i~sd~~~~~~e~~~~~~gl~~~~PLW~~~~~~ll~e~~~~g~~~~iv~v~~~~L~ 151 (194)
T cd01994 91 AVVFGAILSEYQRTRVERVCERLGLEPLAPLWGRDQEELLREMIEAGFKAIIIKVAAEGLD 151 (194)
T ss_pred EEEECccccHHHHHHHHHHHHHcCCEEEecccCCCHHHHHHHHHHcCCeEEEEEeccCCCC
Confidence 34557776666677777776666688899999988888999999999999984 566665
No 18
>PF09328 Phytochelatin_C: Domain of unknown function (DUF1984); InterPro: IPR015407 This entry represents the C-terminal region of plant phytochelatin synthases (also known as glutathione gamma-glutamylcysteinyltransferase; 2.3.2.15 from EC), which is involved in the synthesis of phytochelatins (PC) and homophytochelatins (hPC), the heavy-metal-binding peptides of plants. This enzyme is required for detoxification of heavy metals such as cadmium and arsenate. The N-terminal region of phytochelatin synthase contains the active site, as well as four highly conserved cysteine residues that appear to play an important role in heavy-metal-induced phytochelatin catalysis. The C-terminal region is rich in cysteines, and may act as a metal sensor, whereby the Cys residues bind cadmium ions to bring them into closer proximity and transferring them to the activation site in the N-terminal catalytic domain []. The C-terminal region displays homology to the functional domains of metallothionein and metallochaperone.; GO: 0016756 glutathione gamma-glutamylcysteinyltransferase activity, 0046872 metal ion binding, 0010038 response to metal ion, 0046938 phytochelatin biosynthetic process
Probab=43.83 E-value=9 Score=35.33 Aligned_cols=39 Identities=26% Similarity=0.378 Sum_probs=32.4
Q ss_pred ecCcchhhhhhcCCCCCcceEEEEEe-------ceecCHHHHHHHH
Q 027724 143 YFPPEVDYRLAALPPSAKGLVVWIIE-------AKVLSKSELQFLA 181 (219)
Q Consensus 143 ~vpP~v~yqL~~LPp~~KgLVLWiiE-------G~VLS~~EL~~L~ 181 (219)
-++-++.--+.+||.|...+|-|+.| |+.||++|-+-|+
T Consensus 39 ~v~~vls~vf~SlPsn~~~FIKWVaEVRR~Edg~~~LS~EEk~RL~ 84 (264)
T PF09328_consen 39 DVEEVLSVVFKSLPSNFGEFIKWVAEVRRQEDGGSSLSKEEKERLA 84 (264)
T ss_pred cHHHHHHHHHhcCchhHHHHhhhheeEEecccCCCCCCHHHHHHHH
Confidence 34445566788999999999999997 6889999998876
No 19
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=42.87 E-value=15 Score=32.26 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=21.2
Q ss_pred HHHHHcCCCCCCCeEEEEEeCCeee
Q 027724 177 LQFLALLPTLRPKVRVIAECGNWRK 201 (219)
Q Consensus 177 L~~L~~Lp~~ePrvKVVvEmGG~R~ 201 (219)
++.+..|-++.|.+||++-+|||..
T Consensus 58 ~~~~~~lK~~~p~lKvllSiGG~~~ 82 (253)
T cd06544 58 PEAVKSIKAQHPNVKVVISIGGRGV 82 (253)
T ss_pred HHHHHHHHHhCCCcEEEEEeCCCCC
Confidence 4567777889999999999999974
No 20
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=41.83 E-value=16 Score=25.58 Aligned_cols=32 Identities=13% Similarity=0.136 Sum_probs=14.0
Q ss_pred HHhcceeEEecCCCCCchhhhhhHhhhcCceEEEe
Q 027724 77 VEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDL 111 (219)
Q Consensus 77 LEk~GaLAvy~PlEGG~EGRy~RRLRaaGY~t~~~ 111 (219)
|.+.||=+|.+ |+.-....++|+.+|-+.+..
T Consensus 49 l~~~~v~~li~---~~iG~~~~~~L~~~gI~v~~~ 80 (94)
T PF02579_consen 49 LAEEGVDVLIC---GGIGEGAFRALKEAGIKVYQG 80 (94)
T ss_dssp HHHTTESEEEE---SCSCHHHHHHHHHTTSEEEES
T ss_pred HHHcCCCEEEE---eCCCHHHHHHHHHCCCEEEEc
Confidence 33344444433 333444445555555444443
No 21
>PF15007 CEP44: Centrosomal spindle body, CEP44
Probab=40.64 E-value=9.6 Score=31.58 Aligned_cols=35 Identities=29% Similarity=0.252 Sum_probs=27.2
Q ss_pred chhhhhhHhhhcCce-EEEeccCCCCChhhhhhhcC
Q 027724 93 YEGRYLNRLRYLGYY-FLDLSARGLGDPETTLTKVY 127 (219)
Q Consensus 93 ~EGRy~RRLRaaGY~-t~~~SARGLGDpeayLt~vH 127 (219)
.-.|+++.||..+|- .++...=-.|||++||-=+|
T Consensus 5 ~l~~L~~~Lr~~~yp~~vd~~~l~~G~p~afLpil~ 40 (131)
T PF15007_consen 5 NLRRLEQELRSLKYPDEVDYQGLYKGDPSAFLPILH 40 (131)
T ss_pred HHHHHHHHHHHCCCCCccCHHHHhcCCHHHHHHHHH
Confidence 345889999999999 55555556799999996555
No 22
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=39.82 E-value=60 Score=28.23 Aligned_cols=66 Identities=15% Similarity=0.165 Sum_probs=40.9
Q ss_pred ccccccCcccCcchhhHHHHHHhcceeEEecCCCCCchhhhhhHhhhcCceEEEeccCCCCChhhh
Q 027724 57 IGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETT 122 (219)
Q Consensus 57 ~~d~iggdl~~~d~~~FirDLEk~GaLAvy~PlEGG~EGRy~RRLRaaGY~t~~~SARGLGDpeay 122 (219)
+--.+=||+.--|.-.|++.+=+.=-|-.+.||-+=-..-|++.+-+.|+++..++..--|=++.|
T Consensus 86 v~~vv~GdI~~~~~r~~~e~vc~~lGl~~~~PLW~~d~~~ll~e~i~~Gf~aiIv~V~~~~L~~~~ 151 (218)
T PF01902_consen 86 VEAVVFGDIDSEYQRNWVERVCERLGLEAVFPLWGRDREELLREFIESGFEAIIVKVDADGLDESF 151 (218)
T ss_dssp -SEEE--TTS-HHHHHHHHHHHHHCT-EEE-TTTT--HHHHHHHHHHTT-EEEEEEEESTT--GGG
T ss_pred CCEEEECcCCcHHHHHHHHHHHHHcCCEEEecccCCCHHHHHHHHHHCCCeEEEEEEeccCCChHH
Confidence 444566888777777888876554447788999998888999999999999999854433333444
No 23
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=37.23 E-value=28 Score=28.04 Aligned_cols=31 Identities=26% Similarity=0.550 Sum_probs=26.1
Q ss_pred hhhhHhhhcCceEEEeccCCCCChh---hhhhhc
Q 027724 96 RYLNRLRYLGYYFLDLSARGLGDPE---TTLTKV 126 (219)
Q Consensus 96 Ry~RRLRaaGY~t~~~SARGLGDpe---ayLt~v 126 (219)
...++|+.+||..+..|+|...-.+ .||.++
T Consensus 34 ~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~ 67 (157)
T smart00775 34 KLYRDIQNNGYKILYLTARPIGQADRTRSYLSQI 67 (157)
T ss_pred HHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHh
Confidence 4678899999999999999998764 788663
No 24
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=36.70 E-value=78 Score=27.72 Aligned_cols=61 Identities=11% Similarity=0.066 Sum_probs=49.0
Q ss_pred cccccccCcccCcchhhHHHHHHhcceeEEecCCCCCchhhhhhHhhhcCceEEE--eccCCCC
Q 027724 56 EIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLD--LSARGLG 117 (219)
Q Consensus 56 ~~~d~iggdl~~~d~~~FirDLEk~GaLAvy~PlEGG~EGRy~RRLRaaGY~t~~--~SARGLG 117 (219)
|+-..+=||+.--+...++.++=+.=-|-.+.||-+=-..-|. ++-+.|+++++ ++|.||+
T Consensus 85 gv~~vv~GdI~s~~qr~~~e~vc~~~gl~~~~PLW~~d~~~l~-e~i~~Gf~aiIv~v~~~gL~ 147 (222)
T TIGR00289 85 DVEALCIGAIESNYQKSRIDKVCRELGLKSIAPLWHADPEKLM-YEVAEKFEVIIVSVSAMGLD 147 (222)
T ss_pred CCCEEEECccccHHHHHHHHHHHHHcCCEEeccccCCCHHHHH-HHHHcCCeEEEEEEccCCCC
Confidence 5667788999888888888887777778889999987665565 78899999999 5567776
No 25
>cd02414 jag_KH jag_K homology RNA-binding domain. The KH domain is found in proteins homologous to the Bacillus subtilis protein Jag, which is associated with SpoIIIJ and is necessary for the third stage of sporulation. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=35.95 E-value=35 Score=24.51 Aligned_cols=33 Identities=30% Similarity=0.417 Sum_probs=24.3
Q ss_pred EeceecCHHHHHHHHcCC---CCCCCeEEEEEeCCeee
Q 027724 167 IEAKVLSKSELQFLALLP---TLRPKVRVIAECGNWRK 201 (219)
Q Consensus 167 iEG~VLS~~EL~~L~~Lp---~~ePrvKVVvEmGG~R~ 201 (219)
=.|+.|. -||||+++- ..+.+.+|+|+++|-|.
T Consensus 41 k~G~tL~--AlQ~L~~~~~~~~~~~~~~v~lDv~~YR~ 76 (77)
T cd02414 41 KRGKTLD--ALQYLANLVLNRNTGEYVRITLDVEGYRE 76 (77)
T ss_pred CCCccHH--HHHHHHHHHHhhccCCceEEEEECccccc
Confidence 3678874 366776654 34679999999999884
No 26
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=35.69 E-value=20 Score=26.80 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=18.5
Q ss_pred hhhhhHhhhcCceEEEeccCCCCCh
Q 027724 95 GRYLNRLRYLGYYFLDLSARGLGDP 119 (219)
Q Consensus 95 GRy~RRLRaaGY~t~~~SARGLGDp 119 (219)
-||..|||++|++-+.|=..-.-+|
T Consensus 6 ~khR~~lRa~GLRPVqiWVPDtr~p 30 (65)
T PF11455_consen 6 RKHRERLRAAGLRPVQIWVPDTRRP 30 (65)
T ss_pred HHHHHHHHHcCCCcceeeCCCCCCh
Confidence 3799999999999887755433333
No 27
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=34.94 E-value=25 Score=26.58 Aligned_cols=52 Identities=13% Similarity=0.122 Sum_probs=40.1
Q ss_pred cchhhHHHHHHhcceeEEecCCCCCchhhhhhHhhhcCceEEEeccCCCCCh
Q 027724 68 PDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDP 119 (219)
Q Consensus 68 ~d~~~FirDLEk~GaLAvy~PlEGG~EGRy~RRLRaaGY~t~~~SARGLGDp 119 (219)
-++.+|...|++.+.+-|-.=..|||.-...+.|...||....+.++-+-..
T Consensus 33 ~~~~~l~~~l~~~~~~~v~~E~tg~y~~~l~~~L~~~g~~v~~vnp~~~~~~ 84 (144)
T PF01548_consen 33 AGLEKLLDWLASLGPVLVVMEATGGYWRPLADFLQDAGIEVVVVNPLQVKRF 84 (144)
T ss_pred cchhHHhhhhccccccccccccccccchhhhhheeccccccccccccccccc
Confidence 3568999999999844444444578888999999999999998877655443
No 28
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=34.42 E-value=29 Score=30.52 Aligned_cols=27 Identities=15% Similarity=0.383 Sum_probs=23.3
Q ss_pred HHHHHHHHcCCCCCCCeEEEEEeCCee
Q 027724 174 KSELQFLALLPTLRPKVRVIAECGNWR 200 (219)
Q Consensus 174 ~~EL~~L~~Lp~~ePrvKVVvEmGG~R 200 (219)
.+.+..|..|-++.|.+||++-+||+-
T Consensus 55 ~~~~~~~~~lk~~~p~lkvlisiGG~~ 81 (362)
T cd02872 55 LGLYERFNALKEKNPNLKTLLAIGGWN 81 (362)
T ss_pred hhHHHHHHHHHhhCCCceEEEEEcCCC
Confidence 456777888899999999999999975
No 29
>COG2083 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.13 E-value=45 Score=28.46 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=23.4
Q ss_pred eecCHHHHHHHHcCCCCC----CCeEEEEEeC
Q 027724 170 KVLSKSELQFLALLPTLR----PKVRVIAECG 197 (219)
Q Consensus 170 ~VLS~~EL~~L~~Lp~~e----PrvKVVvEmG 197 (219)
|-+-++||++|+++-..+ =|+-||+|++
T Consensus 48 hyfkr~ELE~La~~ldE~e~~rlrlPivlEi~ 79 (140)
T COG2083 48 HYFKRRELEFLAQILDEDEIPRLRLPIVLEIS 79 (140)
T ss_pred eeeeHHHHHHHHhhcchhhhhhccccEEEEec
Confidence 567899999999988777 5566899998
No 30
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=32.17 E-value=26 Score=30.07 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=15.3
Q ss_pred CCCCCCCcce-----------eEEecCcch
Q 027724 130 CPAHVGKQPI-----------ARWYFPPEV 148 (219)
Q Consensus 130 RPPHLGKq~i-----------~v~~vpP~v 148 (219)
-|||.||-.| +|+++|.-+
T Consensus 13 dP~H~GHl~ia~~~~~~l~ld~vi~~ps~~ 42 (197)
T COG1057 13 DPPHYGHLLIAEEALDQLGLDKVIFLPSPV 42 (197)
T ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEecCCC
Confidence 6999999988 778887633
No 31
>PLN00130 succinate dehydrogenase (SDH3); Provisional
Probab=31.84 E-value=56 Score=29.47 Aligned_cols=80 Identities=18% Similarity=0.176 Sum_probs=48.2
Q ss_pred cccccCcccCcchhhHHHHHHhcceeEEecCCCCCchhhhhhHhhhcCceEEEec--cCCCCChhhhhhhcCCCCC--CC
Q 027724 58 GDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLS--ARGLGDPETTLTKVYPVCP--AH 133 (219)
Q Consensus 58 ~d~iggdl~~~d~~~FirDLEk~GaLAvy~PlEGG~EGRy~RRLRaaGY~t~~~S--ARGLGDpeayLt~vHGVRP--PH 133 (219)
|||||=|+=.-+ .-+...|+++.++ +-..||.-+|=.+-| ..|-.+..+| ++-.-|+.. +.+....|| ||
T Consensus 57 ~d~~g~~~gt~n--~~~~~~e~~k~~~--~ai~g~~l~~~~~~l-~~g~~~r~~ST~s~D~~~~qq-~~~~RlnRPlSPH 130 (213)
T PLN00130 57 NDILGTGLGTNN--AIREEREKSKSTE--AAIVGAQLTRSFRAL-DVGTSKRLFSTISGDIKTTQE-EPKIKSFRPLSPH 130 (213)
T ss_pred cceeccCCCcch--HHHHHHhcccchh--hhhccceecccHHHh-cccccceeeecccCCCCCccc-hhhccCCCCCCCc
Confidence 455554443222 2345567777643 456788888888777 5555554444 344555544 788888887 99
Q ss_pred CCCcceeEEecCc
Q 027724 134 VGKQPIARWYFPP 146 (219)
Q Consensus 134 LGKq~i~v~~vpP 146 (219)
| .|..|.++.
T Consensus 131 L---qIYrpQLTs 140 (213)
T PLN00130 131 L---SVYQPQMNS 140 (213)
T ss_pred c---ccccccchh
Confidence 9 455555544
No 32
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=31.18 E-value=46 Score=32.23 Aligned_cols=84 Identities=19% Similarity=0.289 Sum_probs=54.4
Q ss_pred ceeEEecCCCCCchhhhhh----HhhhcCceEEEeccCCCCChhhhhhhcCCCCCCCCCCcceeEEecCcchhhhhhcCC
Q 027724 81 KAIAIYTPHEGGYEGRYLN----RLRYLGYYFLDLSARGLGDPETTLTKVYPVCPAHVGKQPIARWYFPPEVDYRLAALP 156 (219)
Q Consensus 81 GaLAvy~PlEGG~EGRy~R----RLRaaGY~t~~~SARGLGDpeayLt~vHGVRPPHLGKq~i~v~~vpP~v~yqL~~LP 156 (219)
=.+-|-..+.||.+..|.| +++..||+.+.+-+||+|..+-.=...- +-| -..-+--.|+|.-...|
T Consensus 126 P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG~~g~~LtTpr~f-----~ag----~t~Dl~~~v~~i~~~~P 196 (409)
T KOG1838|consen 126 PIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRGLGGSKLTTPRLF-----TAG----WTEDLREVVNHIKKRYP 196 (409)
T ss_pred cEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCCCCCCccCCCcee-----ecC----CHHHHHHHHHHHHHhCC
Confidence 4566667799999999998 5688999999999999987653211000 000 01112235666666666
Q ss_pred CCCcceEEEEEeceecC
Q 027724 157 PSAKGLVVWIIEAKVLS 173 (219)
Q Consensus 157 p~~KgLVLWiiEG~VLS 173 (219)
....--|=|-+-|-+|.
T Consensus 197 ~a~l~avG~S~Gg~iL~ 213 (409)
T KOG1838|consen 197 QAPLFAVGFSMGGNILT 213 (409)
T ss_pred CCceEEEEecchHHHHH
Confidence 66666677777776664
No 33
>PF08960 DUF1874: Domain of unknown function (DUF1874); InterPro: IPR015055 This entry is represented by Acidianus two-tailed virus, Orf117. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2J85_A 2X4I_C.
Probab=30.70 E-value=21 Score=28.70 Aligned_cols=53 Identities=34% Similarity=0.421 Sum_probs=22.9
Q ss_pred eccCCCCChhhhhhhcCCCCCCCCCCcceeEEecCcchhhhhhcCCCCCcceEEEE----EeceecCHHHHH
Q 027724 111 LSARGLGDPETTLTKVYPVCPAHVGKQPIARWYFPPEVDYRLAALPPSAKGLVVWI----IEAKVLSKSELQ 178 (219)
Q Consensus 111 ~SARGLGDpeayLt~vHGVRPPHLGKq~i~v~~vpP~v~yqL~~LPp~~KgLVLWi----iEG~VLS~~EL~ 178 (219)
+||=|==|-+.+|...=|+.-|- ..+. . .++ +++|.+|+=+ =||+|||++|++
T Consensus 40 vSaIGH~sTa~lls~llg~~ip~---NR~~-i--------~~~---~Gd~alv~~L~~Rl~EG~Vl~~eEl~ 96 (105)
T PF08960_consen 40 VSAIGHDSTAQLLSELLGVNIPM---NRIQ-I--------KLD---PGDKALVFQLKQRLPEGKVLSREELE 96 (105)
T ss_dssp EE----HHHHHHHHHHHT-----------------------B----TT-EEEEEEESS---TT----HHHHH
T ss_pred EEeeCcHHHHHHHHHHhCCcccc---ccEE-E--------Eec---CCCEEEEEEecccCCCCcCCCHHHHH
Confidence 56656667777888887876553 1111 1 122 3677777653 389999999998
No 34
>COG0244 RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
Probab=30.18 E-value=40 Score=28.28 Aligned_cols=30 Identities=30% Similarity=0.280 Sum_probs=26.8
Q ss_pred CCcceEEEEEeceecCHHHHHHHHcCCCCC
Q 027724 158 SAKGLVVWIIEAKVLSKSELQFLALLPTLR 187 (219)
Q Consensus 158 ~~KgLVLWiiEG~VLS~~EL~~L~~Lp~~e 187 (219)
+.-.+.-|++||.+|+-++.+.+..||.++
T Consensus 105 ~~~~~~~~~~eg~~l~~~~v~~~aklp~~~ 134 (175)
T COG0244 105 DKAPIKGGVPEGKVLGAAEVIALAKLPSKE 134 (175)
T ss_pred ccceEEEEEecCcccCHHHHHHHhcCCcHH
Confidence 455678899999999999999999999876
No 35
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=30.12 E-value=54 Score=26.31 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=20.1
Q ss_pred hhhHhhhcCceEEEeccCCCCChh
Q 027724 97 YLNRLRYLGYYFLDLSARGLGDPE 120 (219)
Q Consensus 97 y~RRLRaaGY~t~~~SARGLGDpe 120 (219)
.+++|+.+|+.....|||...+.+
T Consensus 32 ~L~~l~~~G~~IiiaTGR~~~~~~ 55 (126)
T TIGR01689 32 KLRHYKALGFEIVISSSRNMRTYE 55 (126)
T ss_pred HHHHHHHCCCEEEEECCCCchhhh
Confidence 367788999999999999987643
No 36
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=29.96 E-value=1.3e+02 Score=26.44 Aligned_cols=55 Identities=25% Similarity=0.413 Sum_probs=40.6
Q ss_pred cccCc-ccCcchhhHHHHHHhcce-eEEecCCCCC-chhhhhhHhhhcCceEEEeccCCC
Q 027724 60 FIGGD-LLKPDLGRWLSDVEKHKA-IAIYTPHEGG-YEGRYLNRLRYLGYYFLDLSARGL 116 (219)
Q Consensus 60 ~iggd-l~~~d~~~FirDLEk~Ga-LAvy~PlEGG-~EGRy~RRLRaaGY~t~~~SARGL 116 (219)
|.||+ ++..|+.++++.+.+.|- ..|. --|= ..-.+.++|+.+|...+.+|--|.
T Consensus 59 ~~GGEPll~~~~~~ii~~~~~~g~~~~l~--TNG~ll~~e~~~~L~~~g~~~v~iSldg~ 116 (358)
T TIGR02109 59 FSGGEPLARPDLVELVAHARRLGLYTNLI--TSGVGLTEARLDALADAGLDHVQLSFQGV 116 (358)
T ss_pred EeCccccccccHHHHHHHHHHcCCeEEEE--eCCccCCHHHHHHHHhCCCCEEEEeCcCC
Confidence 66787 567899999999988873 2332 2232 345688899999999999998887
No 37
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=29.43 E-value=34 Score=28.66 Aligned_cols=25 Identities=20% Similarity=-0.029 Sum_probs=15.9
Q ss_pred eecCHHHHHHHHcCC-CCCCCeEEEE
Q 027724 170 KVLSKSELQFLALLP-TLRPKVRVIA 194 (219)
Q Consensus 170 ~VLS~~EL~~L~~Lp-~~ePrvKVVv 194 (219)
..+|.+|-..++.+- +..|++.|+-
T Consensus 39 ~~~s~e~R~~Mi~~a~~~~~~v~v~~ 64 (182)
T smart00764 39 SLFSFDERFALVKKGTKDLDNVTVHS 64 (182)
T ss_pred CCCCHHHHHHHHHHHhccCCCEEEEe
Confidence 456777665555554 5678887764
No 38
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=29.31 E-value=32 Score=30.87 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=21.5
Q ss_pred HHcCCCCCCCeEEEEEeCCe---eeeeecchHHHhcc
Q 027724 180 LALLPTLRPKVRVIAECGNW---RKFMWKPLKEIAGL 213 (219)
Q Consensus 180 L~~Lp~~ePrvKVVvEmGG~---R~frWqPL~~~~~a 213 (219)
|..|-++.|+.++..=||.| +=.+|+-.++++..
T Consensus 88 l~~l~~~~p~~~~~~iiG~D~~~~l~~W~~~~~l~~~ 124 (342)
T PRK07152 88 IKYFKKKYPNDEIYFIIGSDNLEKFKKWKNIEEILKK 124 (342)
T ss_pred HHHHHHhCCCCcEEEEecHHHhhhcccccCHHHHHHh
Confidence 33344457877777778876 33467777776654
No 39
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=28.03 E-value=1.1e+02 Score=25.94 Aligned_cols=54 Identities=13% Similarity=-0.005 Sum_probs=43.1
Q ss_pred cchhhHHHHHHhcceeEEecCCCCCchhhhhhHhhhcCceEEEeccCCCCChhh
Q 027724 68 PDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPET 121 (219)
Q Consensus 68 ~d~~~FirDLEk~GaLAvy~PlEGG~EGRy~RRLRaaGY~t~~~SARGLGDpea 121 (219)
+|....+..+.+.++=+|+....+..-..+.+.++.+|+....++.-++.+++.
T Consensus 178 ~~~~~~v~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 231 (332)
T cd06344 178 FNANTAVSQAINNGATVLVLFPDTDTLDKALEVAKANKGRLTLLGGDSLYTPDT 231 (332)
T ss_pred CCHHHHHHHHHhcCCCEEEEeCChhHHHHHHHHHHhcCCCceEEecccccCHHH
Confidence 455557888999999999999888766778888999999888777777777643
No 40
>cd00379 Ribosomal_L10_P0 Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins. In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been sho
Probab=27.88 E-value=39 Score=26.20 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=21.3
Q ss_pred eEEEEEeceecCHHHHHHHHcCCCC
Q 027724 162 LVVWIIEAKVLSKSELQFLALLPTL 186 (219)
Q Consensus 162 LVLWiiEG~VLS~~EL~~L~~Lp~~ 186 (219)
+.-=.+||+++|..++..++.||.+
T Consensus 103 ~k~g~~~~~v~~~~~~~~l~~lp~~ 127 (155)
T cd00379 103 AKGGVVAGKVLDPAGVTALAKLPSR 127 (155)
T ss_pred EEEEEEcCEecCHHHHHHHhcCCCH
Confidence 4445788999999999999999974
No 41
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=27.03 E-value=15 Score=30.22 Aligned_cols=38 Identities=26% Similarity=0.289 Sum_probs=21.9
Q ss_pred CHHHHHHHHcCCCCCCCeEEEEEeCCe---eeeeecchHHHhcc
Q 027724 173 SKSELQFLALLPTLRPKVRVIAECGNW---RKFMWKPLKEIAGL 213 (219)
Q Consensus 173 S~~EL~~L~~Lp~~ePrvKVVvEmGG~---R~frWqPL~~~~~a 213 (219)
|-+-|++|.. ..|..++..=||.| +-.+|...++++..
T Consensus 87 T~~tl~~l~~---~~p~~~~~fiiG~D~l~~l~~W~~~~~i~~~ 127 (203)
T PRK00071 87 TIDTLRELRA---RYPDVELVFIIGADALAQLPRWKRWEEILDL 127 (203)
T ss_pred HHHHHHHHHH---HCCCCcEEEEEcHHHhhhcccccCHHHHHHh
Confidence 3334444443 56777777777776 23357776666643
No 42
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=26.45 E-value=24 Score=31.73 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=26.9
Q ss_pred hhhHhhhcCceEEEeccCCCCChhhhhhhcCCCCCCC
Q 027724 97 YLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCPAH 133 (219)
Q Consensus 97 y~RRLRaaGY~t~~~SARGLGDpeayLt~vHGVRPPH 133 (219)
+.+.|...+--++..|| ||||.-...++.||+-||.
T Consensus 98 ~f~~L~~~~IP~lIFSA-GlgdvI~~vL~q~~~~~~N 133 (246)
T PF05822_consen 98 FFDKLEEHNIPLLIFSA-GLGDVIEEVLRQAGVFHPN 133 (246)
T ss_dssp HHHHHHCTT--EEEEEE-EEHHHHHHHHHHTT--BTT
T ss_pred HHHHHHhcCCCEEEEeC-CcHHHHHHHHHHcCCCCCC
Confidence 56778888888999997 9999988888888888765
No 43
>PF04784 DUF547: Protein of unknown function, DUF547; InterPro: IPR006869 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans and Arabidopsis thaliana (Mouse-ear cress).
Probab=26.29 E-value=1.3e+02 Score=23.38 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=33.9
Q ss_pred eEEEEEeceecCHHHHHHHHcCC----CCCCCeEEEEEeCCe
Q 027724 162 LVVWIIEAKVLSKSELQFLALLP----TLRPKVRVIAECGNW 199 (219)
Q Consensus 162 LVLWiiEG~VLS~~EL~~L~~Lp----~~ePrvKVVvEmGG~ 199 (219)
-+.+.|.|+.+|-.++|.-..-+ ..+||+-..+=||..
T Consensus 49 ~~~y~Igg~~~SL~dIe~~ILR~~~~~~~DprihFaL~cgs~ 90 (117)
T PF04784_consen 49 KVRYNIGGQRFSLDDIEHGILRGNRPPWPDPRIHFALNCGSK 90 (117)
T ss_pred ceEEEECCEEecHHHHHHhhccCCCCCCCCCceeeeeecCCC
Confidence 37889999999999999988888 689999999998864
No 44
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=26.13 E-value=62 Score=25.72 Aligned_cols=36 Identities=3% Similarity=-0.025 Sum_probs=28.2
Q ss_pred hhhHhhhcCceEEEeccCCCCChhhhhhhcCCCCCCC
Q 027724 97 YLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCPAH 133 (219)
Q Consensus 97 y~RRLRaaGY~t~~~SARGLGDpeayLt~vHGVRPPH 133 (219)
-+++||.+|+.....|.|...+...++.+. |...|-
T Consensus 23 al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l-~~~~~~ 58 (225)
T TIGR01482 23 AIRKAESVGIPVVLVTGNSVQFARALAKLI-GTPDPV 58 (225)
T ss_pred HHHHHHHCCCEEEEEcCCchHHHHHHHHHh-CCCCeE
Confidence 478899999999999999999988877554 443344
No 45
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=25.93 E-value=86 Score=26.92 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=33.9
Q ss_pred hhhHHHHHHhcceeEEec---CCCCCchhhhhhHhhhcCceEEEecc
Q 027724 70 LGRWLSDVEKHKAIAIYT---PHEGGYEGRYLNRLRYLGYYFLDLSA 113 (219)
Q Consensus 70 ~~~FirDLEk~GaLAvy~---PlEGG~EGRy~RRLRaaGY~t~~~SA 113 (219)
+++|++++.++|+=+|-. |.| .-.++.+++|..|-....+-+
T Consensus 93 ~~~fi~~~~~aG~~giiipDl~~e--e~~~~~~~~~~~g~~~i~~i~ 137 (242)
T cd04724 93 LERFLRDAKEAGVDGLIIPDLPPE--EAEEFREAAKEYGLDLIFLVA 137 (242)
T ss_pred HHHHHHHHHHCCCcEEEECCCCHH--HHHHHHHHHHHcCCcEEEEeC
Confidence 589999999999999998 666 334889999999977666444
No 46
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=25.27 E-value=32 Score=27.91 Aligned_cols=81 Identities=20% Similarity=0.177 Sum_probs=45.1
Q ss_pred CCCCCCCcce-----------eEEecCcchhhh-----------hh---cCCCCCcceEEEEEe----ceecCHHHHHHH
Q 027724 130 CPAHVGKQPI-----------ARWYFPPEVDYR-----------LA---ALPPSAKGLVVWIIE----AKVLSKSELQFL 180 (219)
Q Consensus 130 RPPHLGKq~i-----------~v~~vpP~v~yq-----------L~---~LPp~~KgLVLWiiE----G~VLS~~EL~~L 180 (219)
-|||.||..+ +++.+|..-.+. ++ .+=.....+.+.-.| +..-+-+-|++|
T Consensus 9 dP~H~GH~~~~~~a~~~~~~d~v~~~~~~~~~~k~~~~~~~~~R~~m~~~~~~~~~~i~v~~~e~~~~~~~~t~~tl~~l 88 (192)
T cd02165 9 DPPHLGHLAIAEEALEELGLDRVLLLPSANPPHKPPKPASFEHRLEMLKLAIEDNPKFEVSDIEIKRDGPSYTIDTLEEL 88 (192)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCCCCCCHHHHHHHHHHHHcCCCCEEEeHHHHhCCCCCCHHHHHHHH
Confidence 6999999887 566665532221 00 000122344555555 334444455555
Q ss_pred HcCCCCCCCeEEEEEeCCee---eeeecchHHHhcc
Q 027724 181 ALLPTLRPKVRVIAECGNWR---KFMWKPLKEIAGL 213 (219)
Q Consensus 181 ~~Lp~~ePrvKVVvEmGG~R---~frWqPL~~~~~a 213 (219)
.. ..|..+++.=||.|= -..|..-++++..
T Consensus 89 ~~---~~p~~~~~~liG~D~l~~~~~W~~~~~i~~~ 121 (192)
T cd02165 89 RE---RYPNAELYFIIGSDNLIRLPKWYDWEELLSL 121 (192)
T ss_pred HH---hccCCCEEEEEcHHHhhhcccccCHHHHHHh
Confidence 44 467788888888763 2347776666543
No 47
>PRK10985 putative hydrolase; Provisional
Probab=25.19 E-value=64 Score=27.81 Aligned_cols=39 Identities=18% Similarity=0.269 Sum_probs=27.4
Q ss_pred ceeEEecC-CCCCchhhhh----hHhhhcCceEEEeccCCCCCh
Q 027724 81 KAIAIYTP-HEGGYEGRYL----NRLRYLGYYFLDLSARGLGDP 119 (219)
Q Consensus 81 GaLAvy~P-lEGG~EGRy~----RRLRaaGY~t~~~SARGLGDp 119 (219)
..+-|+.+ +.|+....|. +.|..+||.++..--||.|+.
T Consensus 58 ~p~vll~HG~~g~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~ 101 (324)
T PRK10985 58 KPRLVLFHGLEGSFNSPYAHGLLEAAQKRGWLGVVMHFRGCSGE 101 (324)
T ss_pred CCEEEEeCCCCCCCcCHHHHHHHHHHHHCCCEEEEEeCCCCCCC
Confidence 44555554 3444455555 468999999999999998753
No 48
>PRK11713 16S ribosomal RNA methyltransferase RsmE; Provisional
Probab=25.03 E-value=96 Score=26.41 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=28.8
Q ss_pred ceeEEecCCCCCchhhhhhHhhhcCceEEEeccC
Q 027724 81 KAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSAR 114 (219)
Q Consensus 81 GaLAvy~PlEGG~EGRy~RRLRaaGY~t~~~SAR 114 (219)
+.+.+.+=+||||.-+=..-|+.+|+..+++.-|
T Consensus 178 ~~i~viIGPEGGfs~~Ei~~l~~~g~~~vsLG~~ 211 (234)
T PRK11713 178 GKVLLLIGPEGGFSPEEIELLREAGFTPVSLGPR 211 (234)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHCCCEEeccCCC
Confidence 4688999999999998888899999988877544
No 49
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=24.85 E-value=18 Score=29.76 Aligned_cols=16 Identities=19% Similarity=0.495 Sum_probs=12.9
Q ss_pred CCCCCCCcce--------eEEecC
Q 027724 130 CPAHVGKQPI--------ARWYFP 145 (219)
Q Consensus 130 RPPHLGKq~i--------~v~~vp 145 (219)
-|||.||-.+ +||++|
T Consensus 12 DP~H~GHl~ia~~~~~~d~v~~vP 35 (174)
T PRK08887 12 NPPSLGHKSVIESLSHFDLVLLVP 35 (174)
T ss_pred CCCCHHHHHHHHHhhcCCEEEEEE
Confidence 6999999888 677664
No 50
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=24.71 E-value=1.1e+02 Score=28.95 Aligned_cols=72 Identities=24% Similarity=0.403 Sum_probs=51.1
Q ss_pred CChhhhhhhcCCCCCCCCCCcceeEEecCcchhhhhhcCCC--CCcceEEEEEeceecCHH--HHHHHHcC-CCCCCCeE
Q 027724 117 GDPETTLTKVYPVCPAHVGKQPIARWYFPPEVDYRLAALPP--SAKGLVVWIIEAKVLSKS--ELQFLALL-PTLRPKVR 191 (219)
Q Consensus 117 GDpeayLt~vHGVRPPHLGKq~i~v~~vpP~v~yqL~~LPp--~~KgLVLWiiEG~VLS~~--EL~~L~~L-p~~ePrvK 191 (219)
||..-| -+.|-=.|..| .|+|+..+-.+..... +.++ =+||+=|..=+++ -++.|..| .....++|
T Consensus 107 GD~~~~-a~~~~~v~~~l-------lyfpt~m~~~l~~~~~~~~~~~-~~tIlvGNSgd~SN~Hie~L~~l~~~~~~~v~ 177 (322)
T PRK02797 107 GDLSYF-AQRHPKVPGSL-------LYFPTRMDPSLNTMANDRQRAG-KMTILVGNSGDRSNRHIEALRALHQQFGDNVK 177 (322)
T ss_pred chHHHH-HHhcCCCCccE-------EecCCcchhhhccccccccCCC-ceEEEEeCCCCCcccHHHHHHHHHHHhCCCeE
Confidence 788765 55554444333 8999988877776653 1222 3888888865444 49999888 77889999
Q ss_pred EEEEeC
Q 027724 192 VIAECG 197 (219)
Q Consensus 192 VVvEmG 197 (219)
|++=||
T Consensus 178 ii~Pls 183 (322)
T PRK02797 178 IIVPMG 183 (322)
T ss_pred EEEECC
Confidence 999997
No 51
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=24.68 E-value=42 Score=32.80 Aligned_cols=21 Identities=33% Similarity=0.327 Sum_probs=19.7
Q ss_pred eceecCHHHHHHHHcCCCCCC
Q 027724 168 EAKVLSKSELQFLALLPTLRP 188 (219)
Q Consensus 168 EG~VLS~~EL~~L~~Lp~~eP 188 (219)
-|+|.|+.||+-|++||+..+
T Consensus 185 tGkvfsReeLe~ia~l~~k~~ 205 (420)
T KOG0257|consen 185 TGKVFSREELERIAELCKKHG 205 (420)
T ss_pred cCcccCHHHHHHHHHHHHHCC
Confidence 499999999999999999887
No 52
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=24.62 E-value=1.7e+02 Score=26.08 Aligned_cols=57 Identities=23% Similarity=0.293 Sum_probs=39.6
Q ss_pred ccccCc-ccCcchhhHHHHHHhcceeEEecCCCCC-chhhhhhHhhhcCceEEEeccCCC
Q 027724 59 DFIGGD-LLKPDLGRWLSDVEKHKAIAIYTPHEGG-YEGRYLNRLRYLGYYFLDLSARGL 116 (219)
Q Consensus 59 d~iggd-l~~~d~~~FirDLEk~GaLAvy~PlEGG-~EGRy~RRLRaaGY~t~~~SARGL 116 (219)
.|.||+ ++.+|+-++++.+.+.|-. +..---|- ......++|+..|...+.+|--|.
T Consensus 67 ~~~GGEPll~~~~~~il~~~~~~g~~-~~i~TNG~ll~~~~~~~L~~~g~~~v~iSldg~ 125 (378)
T PRK05301 67 HFSGGEPLLRKDLEELVAHARELGLY-TNLITSGVGLTEARLAALKDAGLDHIQLSFQDS 125 (378)
T ss_pred EEECCccCCchhHHHHHHHHHHcCCc-EEEECCCccCCHHHHHHHHHcCCCEEEEEecCC
Confidence 356776 6688988888888777632 22222232 344678899999999999998875
No 53
>PF11658 DUF3260: Protein of unknown function (DUF3260); InterPro: IPR017744 This protein was identified by the partial phylogenetic profiling algorithm [] as part of the system for cellulose biosynthesis in bacteria, and in fact is found in cellulose biosynthesis gene regions. The protein was designated YhjU in Salmonella enteritidis, where disruption of its gene disrupts cellulose biosynthesis and biofilm formation [].
Probab=24.32 E-value=62 Score=32.45 Aligned_cols=26 Identities=27% Similarity=0.575 Sum_probs=22.1
Q ss_pred chhhHHHHHHhcc--eeEEecCCCCCch
Q 027724 69 DLGRWLSDVEKHK--AIAIYTPHEGGYE 94 (219)
Q Consensus 69 d~~~FirDLEk~G--aLAvy~PlEGG~E 94 (219)
|+++|+..|||+| ++=|.+|--|.+.
T Consensus 384 dl~~F~~~Le~SgR~v~vv~VPEHGAAl 411 (518)
T PF11658_consen 384 DLDRFFDELEKSGRKVMVVVVPEHGAAL 411 (518)
T ss_pred HHHHHHHHHHHcCCcEEEEEecCccccc
Confidence 8999999999998 6778888777653
No 54
>PF04023 FeoA: FeoA domain; InterPro: IPR007167 This entry represents the core domain of the ferrous iron (Fe2+) transport protein FeoA found in bacteria. This domain also occurs at the C terminus in related proteins. The transporter Feo is composed of three proteins: FeoA a small, soluble SH3-domain protein probably located in the cytosol; FeoB, a large protein with a cytosolic N-terminal G-protein domain and a C-terminal integral inner-membrane domain containing two 'Gate' motifs which likely functions as the Fe2+ permease; and FeoC, a small protein apparently functioning as an [Fe-S]-dependent transcriptional repressor [, ]. Feo allows the bacterial cell to acquire iron from its environment. ; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 1G3T_A 1C0W_B 1BI3_A 1QVP_A 1BI1_A 1BYM_A 2QQB_A ....
Probab=24.04 E-value=74 Score=21.75 Aligned_cols=41 Identities=29% Similarity=0.396 Sum_probs=30.1
Q ss_pred hhhcCCCCCcceEEEEEeceecCHHHHHHHHcCCCCCCCeEEEEE
Q 027724 151 RLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAE 195 (219)
Q Consensus 151 qL~~LPp~~KgLVLWiiEG~VLS~~EL~~L~~Lp~~ePrvKVVvE 195 (219)
.|..+|++.++.|.++-+. +++-+++|..+= ..|..+|-|.
T Consensus 2 ~L~~~~~g~~~~I~~i~~~---d~~~~~~L~~lG-l~~G~~i~v~ 42 (74)
T PF04023_consen 2 PLSELPPGERARIVRISDE---DPELLRRLADLG-LTPGSEITVI 42 (74)
T ss_dssp BGGGSSTTEEEEEEEESTS---SHHHHHHHHHCT--STTEEEEEE
T ss_pred ChhHCCCCCEEEEEEEECC---CHHHHHHHHHCC-CCCCCEEEEE
Confidence 4889999999999999863 677788888773 4455555444
No 55
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=23.96 E-value=2.5e+02 Score=24.60 Aligned_cols=125 Identities=12% Similarity=0.096 Sum_probs=65.6
Q ss_pred hhHHHHHHhcceeEEecCCCCCchhhhhhHhhhcCceEEEeccCCCCChhhhhhhcCCCCCCCCCCcceeEEecCcchhh
Q 027724 71 GRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCPAHVGKQPIARWYFPPEVDY 150 (219)
Q Consensus 71 ~~FirDLEk~GaLAvy~PlEGG~EGRy~RRLRaaGY~t~~~SARGLGDpeayLt~vHGVRPPHLGKq~i~v~~vpP~v~y 150 (219)
+.++++.=+.|. .-++=|.-|+.+|+.|---..+-+.+.+--...=+.-.-+.+.||..|+ =....|.+=+. +-..-
T Consensus 71 D~~i~~~~~~g~-~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~-~~~~~v~~Dl~-~~w~~ 147 (260)
T TIGR00027 71 DDFLLAAVAAGI-RQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPP-AHRRAVPVDLR-QDWPA 147 (260)
T ss_pred HHHHHHHHhcCC-cEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCC-CceEEeccCch-hhHHH
Confidence 455655444564 5689999999999986422334555554322222222235555665433 11111111111 11111
Q ss_pred hhhcCCCCCcceEEEEEecee--cCHHHHHHHH-cCCCCC-CCeEEEEEeCC
Q 027724 151 RLAALPPSAKGLVVWIIEAKV--LSKSELQFLA-LLPTLR-PKVRVIAECGN 198 (219)
Q Consensus 151 qL~~LPp~~KgLVLWiiEG~V--LS~~EL~~L~-~Lp~~e-PrvKVVvEmGG 198 (219)
.|..=.=+.+-=++|+.||-. |+.+++..|. .+.+.- |.-.|+.|.-+
T Consensus 148 ~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 148 ALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred HHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 222100112234899999976 7888876443 343444 88999999754
No 56
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=23.90 E-value=49 Score=22.63 Aligned_cols=33 Identities=12% Similarity=0.081 Sum_probs=20.4
Q ss_pred hhhhHhhhcCceEEEeccCCCCChhhhhhhcCCC
Q 027724 96 RYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPV 129 (219)
Q Consensus 96 Ry~RRLRaaGY~t~~~SARGLGDpeayLt~vHGV 129 (219)
..+++|+.+||....+|++..-..+.++.. +|+
T Consensus 31 ~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~-~~~ 63 (139)
T cd01427 31 EALKELKEKGIKLALATNKSRREVLELLEE-LGL 63 (139)
T ss_pred HHHHHHHHCCCeEEEEeCchHHHHHHHHHH-cCC
Confidence 456777777777777777765444444433 344
No 57
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=23.34 E-value=1.2e+02 Score=25.35 Aligned_cols=53 Identities=9% Similarity=-0.048 Sum_probs=40.6
Q ss_pred cchhhHHHHHHhcceeEEecCCCCCchhhhhhHhhhcCceEEEeccCCCCChh
Q 027724 68 PDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPE 120 (219)
Q Consensus 68 ~d~~~FirDLEk~GaLAvy~PlEGG~EGRy~RRLRaaGY~t~~~SARGLGDpe 120 (219)
-|+...++.+.++++=+||...-+..-.++.+-++.+|+....+..-|+.|++
T Consensus 179 ~d~~~~v~~l~~~~pd~v~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 231 (312)
T cd06346 179 SSYSSEVAAAAAGGPDALVVIGYPETGSGILRSAYEQGLFDKFLLTDGMKSDS 231 (312)
T ss_pred CCHHHHHHHHHhcCCCEEEEecccchHHHHHHHHHHcCCCCceEeeccccChH
Confidence 46777888888888888888877777778888888888876666666676664
No 58
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=23.14 E-value=1.2e+02 Score=25.83 Aligned_cols=31 Identities=19% Similarity=0.162 Sum_probs=21.6
Q ss_pred EecCCCCCchh---hhhhHhhhcCceEEEeccCC
Q 027724 85 IYTPHEGGYEG---RYLNRLRYLGYYFLDLSARG 115 (219)
Q Consensus 85 vy~PlEGG~EG---Ry~RRLRaaGY~t~~~SARG 115 (219)
|.+--+||+|. -..+.|+.+||.+..++..+
T Consensus 6 i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~ 39 (357)
T PRK00726 6 LAGGGTGGHVFPALALAEELKKRGWEVLYLGTAR 39 (357)
T ss_pred EEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCC
Confidence 44555778887 35677888888887777643
No 59
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=22.63 E-value=2.3e+02 Score=21.69 Aligned_cols=50 Identities=22% Similarity=0.264 Sum_probs=37.1
Q ss_pred CcchhhHHHHHHhcceeEEec-CCC------------CCchhhhhhHhhhcCceEEEeccCCCC
Q 027724 67 KPDLGRWLSDVEKHKAIAIYT-PHE------------GGYEGRYLNRLRYLGYYFLDLSARGLG 117 (219)
Q Consensus 67 ~~d~~~FirDLEk~GaLAvy~-PlE------------GG~EGRy~RRLRaaGY~t~~~SARGLG 117 (219)
.+++++-++.|.+.|+=-|+. |+- |--+.-++.||.++||..- ...+|||
T Consensus 41 ~P~i~~~l~~l~~~G~~~i~lvPl~L~~G~H~~~Dipge~~~SW~~~l~~~g~~v~-~~~~glg 103 (103)
T cd03413 41 YPGLDDVLAKLKKAGIKKVTLMPLMLVAGDHAHNDMAGDEPDSWKSILEAAGIKVE-TVLKGLG 103 (103)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEehhheecccchhcCCCCCchhHHHHHHHCCCeeE-EEeccCC
Confidence 588899999998888766542 321 2235689999999999876 5678886
No 60
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=22.57 E-value=2.2e+02 Score=21.91 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=17.0
Q ss_pred CCcceEEEEEeceecCHHHHHH
Q 027724 158 SAKGLVVWIIEAKVLSKSELQF 179 (219)
Q Consensus 158 ~~KgLVLWiiEG~VLS~~EL~~ 179 (219)
+.+|.|.|..-|.+ +.+||+.
T Consensus 130 d~~G~i~~~~~G~~-~~~~l~~ 150 (152)
T cd00340 130 DRDGEVVKRFAPTT-DPEELEK 150 (152)
T ss_pred CCCCcEEEEECCCC-CHHHHHh
Confidence 46899999999976 8877764
No 61
>PF04452 Methyltrans_RNA: RNA methyltransferase; InterPro: IPR006700 Methyltransferases (Mtases) are responsible for the transfer of methyl groups between two molecules. The transfer of the methyl group from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms. The reaction is catalyzed by Mtases and modifies DNA, RNA, proteins or small molecules, such as catechol, for regulatory purposes. Proteins in this entry belong to the RsmE family of Mtases, this is supported by crystal structural studying, which show a close structural homology to other known methyltransferases []. This entry contains RsmE of Escherichia coli, which specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [, ].; GO: 0008168 methyltransferase activity, 0006364 rRNA processing; PDB: 1NXZ_B 1VHY_B 2EGW_A 2EGV_A 2Z0Y_A 2CX8_A 3KW2_A 1VHK_D 1Z85_B 1V6Z_A ....
Probab=21.77 E-value=1e+02 Score=25.96 Aligned_cols=33 Identities=30% Similarity=0.483 Sum_probs=24.1
Q ss_pred eeEEecCCCCCchhhhhhHhhhcCceEEEeccC
Q 027724 82 AIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSAR 114 (219)
Q Consensus 82 aLAvy~PlEGG~EGRy~RRLRaaGY~t~~~SAR 114 (219)
.+.|.+=+||||.-.=...|+.+|+..+++..|
T Consensus 176 ~i~i~IGPEGGfs~~E~~~~~~~g~~~vsLG~~ 208 (225)
T PF04452_consen 176 SIAIIIGPEGGFSEEEIEFLKEAGFQPVSLGPR 208 (225)
T ss_dssp EEEEEE--TT---HHHHHHHHHCTEEEEB-SSS
T ss_pred cEEEEECCCCCCCHHHHHHHHHCCCEEEEcCCC
Confidence 899999999999999999999999999887654
No 62
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=21.71 E-value=86 Score=28.96 Aligned_cols=45 Identities=20% Similarity=0.378 Sum_probs=31.2
Q ss_pred cCcccCcchhhHHHHHHhcceeEEe-cCCCCCchhhhhhHhhhcCce
Q 027724 62 GGDLLKPDLGRWLSDVEKHKAIAIY-TPHEGGYEGRYLNRLRYLGYY 107 (219)
Q Consensus 62 ggdl~~~d~~~FirDLEk~GaLAvy-~PlEGG~EGRy~RRLRaaGY~ 107 (219)
+.|-.+ |+++|+++|.+.|.-+|- -|--|..+|+|+.-|...|..
T Consensus 90 atDP~~-~~~~fl~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~Gmg 135 (268)
T PF09370_consen 90 ATDPFR-DMDRFLDELKELGFSGVQNFPTVGLIDGQFRQNLEETGMG 135 (268)
T ss_dssp TT-TT---HHHHHHHHHHHT-SEEEE-S-GGG--HHHHHHHHHTT--
T ss_pred CcCCCC-cHHHHHHHHHHhCCceEEECCcceeeccHHHHHHHhcCCC
Confidence 556664 999999999999999984 488899999999999888764
No 63
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
Probab=21.67 E-value=23 Score=29.06 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=21.4
Q ss_pred HcCCCCCCCeEEEEEeCCee---eeeecchHHHhcc
Q 027724 181 ALLPTLRPKVRVIAECGNWR---KFMWKPLKEIAGL 213 (219)
Q Consensus 181 ~~Lp~~ePrvKVVvEmGG~R---~frWqPL~~~~~a 213 (219)
..|-+..|..++..=||.|= =..|+-.++++..
T Consensus 85 ~~l~~~~p~~~~~~iiG~D~l~~l~~W~~~~~i~~~ 120 (193)
T TIGR00482 85 KHLKKKYPDVELYFIIGADALRSFPLWKDWQELLEL 120 (193)
T ss_pred HHHHHHCCCCeEEEEEcHHHhhhhccccCHHHHHHh
Confidence 33344578888888888763 2367777777654
No 64
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=21.65 E-value=1.8e+02 Score=23.64 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=28.7
Q ss_pred hhhcCCCCCcceEEEEEeceecCHHHHHHHHcCCCCCCCeEEEEEe
Q 027724 151 RLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAEC 196 (219)
Q Consensus 151 qL~~LPp~~KgLVLWiiEG~VLS~~EL~~L~~Lp~~ePrvKVVvEm 196 (219)
.+.......+| |+|+|..-+..+.+.|..+-...|.+=|.+++
T Consensus 70 ~i~~~~~~~~~---~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~ 112 (210)
T TIGR01351 70 RLTQNQDNENG---FILDGFPRTLSQAEALDALLKEKIDAVIELDV 112 (210)
T ss_pred HHhcCcccCCc---EEEeCCCCCHHHHHHHHHHhccCCCEEEEEEC
Confidence 44443333444 89999999999988887765545665555554
No 65
>PLN02486 aminoacyl-tRNA ligase
Probab=21.55 E-value=1.9e+02 Score=27.41 Aligned_cols=55 Identities=24% Similarity=0.123 Sum_probs=39.9
Q ss_pred cchhhHHHHHHhcceeEEecCCC--CC--ch-----hhhhhHhhhc-CceEEEeccCCCCChhhhhhhc
Q 027724 68 PDLGRWLSDVEKHKAIAIYTPHE--GG--YE-----GRYLNRLRYL-GYYFLDLSARGLGDPETTLTKV 126 (219)
Q Consensus 68 ~d~~~FirDLEk~GaLAvy~PlE--GG--~E-----GRy~RRLRaa-GY~t~~~SARGLGDpeayLt~v 126 (219)
=|+++++.++|+..-+.||.--+ |. .= -...+.|..+ |...++. ++|+++|+.+.
T Consensus 59 rd~~~~l~~~e~~~~~~vYtG~~PSg~~lHlGHlv~~~~~~~lQ~~~~~~~~I~----iaD~e~~~~~~ 123 (383)
T PLN02486 59 RDLEEILDAYEKGEKFYLYTGRGPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQ----LTDDEKFLWKN 123 (383)
T ss_pred cCHHHHHHHHhcCCCeEEEeCCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEE----ecCHHHHhhcC
Confidence 38899999999999999998654 22 11 2345677766 6666666 77999999863
No 66
>PF03944 Endotoxin_C: delta endotoxin; InterPro: IPR005638 This family contains insecticidal toxins produced by Bacillus species of bacteria. During spore formation the bacteria produce crystals of this protein. When an insect ingests these proteins, they are activated by proteolytic cleavage. The N terminus is cleaved in all of the proteins and a C-terminal extension is cleaved in some members. Once activated, the endotoxin binds to the gut epithelium and causes cell lysis by the formation of cation-selective channels, which leads to death. The activated region of the delta toxin is composed of three distinct structural domains: an N-terminal helical bundle domain (IPR005639 from INTERPRO) involved in membrane insertion and pore formation; a beta-sheet central domain (IPR001178 from INTERPRO) involved in receptor binding; and a C-terminal beta-sandwich domain that interacts with the N-terminal domain to form a channel [, ]. This entry represents the conserved C-terminal domain.; PDB: 1DLC_A 1JI6_A 1W99_A 1CIY_A 1I5P_A 2C9K_A 3EB7_A.
Probab=21.18 E-value=13 Score=29.52 Aligned_cols=40 Identities=28% Similarity=0.402 Sum_probs=26.2
Q ss_pred cccCcccCcchhhHHHHHHhccee--EEecCCCCCchhhhhhHhhhcCceE
Q 027724 60 FIGGDLLKPDLGRWLSDVEKHKAI--AIYTPHEGGYEGRYLNRLRYLGYYF 108 (219)
Q Consensus 60 ~iggdl~~~d~~~FirDLEk~GaL--Avy~PlEGG~EGRy~RRLRaaGY~t 108 (219)
|.|||+|++.- .+.+ .+-+....-.-.||+=|+|.|.=..
T Consensus 24 ~tGGdlv~l~~---------~~~~~~~~~v~~~~~~~~~YrIRiRYAs~~~ 65 (143)
T PF03944_consen 24 FTGGDLVKLSN---------SGSLSIKIRVTINNSSSQKYRIRIRYASNSN 65 (143)
T ss_dssp SSSS-EEEESS---------SCEECEEEEEEESSSSTEEEEEEEEEEESS-
T ss_pred ccCCcEEEEcC---------CCceEEEEEEEecCCCCceEEEEEEEEECCC
Confidence 89999998753 3433 3433333777889999999775433
No 67
>PRK06107 aspartate aminotransferase; Provisional
Probab=20.97 E-value=55 Score=29.02 Aligned_cols=29 Identities=31% Similarity=0.363 Sum_probs=26.1
Q ss_pred EeceecCHHHHHHHHcCCCCCCCeEEEEE
Q 027724 167 IEAKVLSKSELQFLALLPTLRPKVRVIAE 195 (219)
Q Consensus 167 iEG~VLS~~EL~~L~~Lp~~ePrvKVVvE 195 (219)
--|+++|.+|++.|+.++++.+++.||+.
T Consensus 178 PtG~~~s~~~~~~l~~~a~~~~~~~iI~D 206 (402)
T PRK06107 178 PTGAVYSRAELRALADVLLRHPHVLVLTD 206 (402)
T ss_pred CCCcCcCHHHHHHHHHHHHHcCCeEEEEe
Confidence 36999999999999999999888888876
No 68
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=20.93 E-value=1.3e+02 Score=20.68 Aligned_cols=30 Identities=10% Similarity=0.040 Sum_probs=21.7
Q ss_pred EEEEeceecCHHHHHHHHcCCCCCCCeEEEEEe
Q 027724 164 VWIIEAKVLSKSELQFLALLPTLRPKVRVIAEC 196 (219)
Q Consensus 164 LWiiEG~VLS~~EL~~L~~Lp~~ePrvKVVvEm 196 (219)
.||+||..++..+++ ..=...+.++|.+..
T Consensus 34 ~~I~eg~~~~~~~~~---~~~~~~~d~~Iyld~ 63 (69)
T cd02019 34 IVILEGLYASYKSRD---ARIRDLADLKIYLDA 63 (69)
T ss_pred EEEecchhhhhhhHH---hhccccccEEEEEEe
Confidence 999999999998866 222345667777664
No 69
>PF14178 YppF: YppF-like protein
Probab=20.84 E-value=44 Score=24.91 Aligned_cols=24 Identities=17% Similarity=0.436 Sum_probs=18.4
Q ss_pred cccCcccCcchhhHHHHHHhccee
Q 027724 60 FIGGDLLKPDLGRWLSDVEKHKAI 83 (219)
Q Consensus 60 ~iggdl~~~d~~~FirDLEk~GaL 83 (219)
||=|++---|--..+|+||+.||.
T Consensus 32 Yi~gei~i~eYR~lvreLE~~GA~ 55 (60)
T PF14178_consen 32 YIQGEISINEYRNLVRELEANGAV 55 (60)
T ss_pred HHhCcccHHHHHHHHHHHHHhCCC
Confidence 356766666667788999999984
No 70
>TIGR03368 cellulose_yhjU cellulose synthase operon protein YhjU. This protein was identified by the partial phylogenetic profiling algorithm (PubMed:16930487) as part of the system for cellulose biosynthesis in bacteria, and in fact is found in cellulose biosynthesis gene regions. The protein was designated YhjU in Salmonella enteritidis, where disruption of its gene disrupts cellulose biosynthesis and biofilm formation (PubMed:11929533).
Probab=20.60 E-value=79 Score=31.78 Aligned_cols=25 Identities=28% Similarity=0.658 Sum_probs=21.8
Q ss_pred chhhHHHHHHhcc--eeEEecCCCCCc
Q 027724 69 DLGRWLSDVEKHK--AIAIYTPHEGGY 93 (219)
Q Consensus 69 d~~~FirDLEk~G--aLAvy~PlEGG~ 93 (219)
|+++|+..|||+| ++=|++|--|++
T Consensus 381 dld~F~~~le~SgR~vvVv~VPEHGAA 407 (518)
T TIGR03368 381 DLDRFFDELEKSGRKVVVVLVPEHGAA 407 (518)
T ss_pred HHHHHHHHHHHcCCcEEEEEecCcchh
Confidence 8999999999998 677889977765
No 71
>PLN02511 hydrolase
Probab=20.26 E-value=1.3e+02 Score=27.13 Aligned_cols=41 Identities=27% Similarity=0.505 Sum_probs=30.4
Q ss_pred cceeEEecC-CCCCchhhhh----hHhhhcCceEEEeccCCCCChh
Q 027724 80 HKAIAIYTP-HEGGYEGRYL----NRLRYLGYYFLDLSARGLGDPE 120 (219)
Q Consensus 80 ~GaLAvy~P-lEGG~EGRy~----RRLRaaGY~t~~~SARGLGDpe 120 (219)
.+.+-|+.+ ++|+.+..|. ..+...||+++.+-.||.|+-+
T Consensus 99 ~~p~vvllHG~~g~s~~~y~~~~~~~~~~~g~~vv~~d~rG~G~s~ 144 (388)
T PLN02511 99 DAPVLILLPGLTGGSDDSYVRHMLLRARSKGWRVVVFNSRGCADSP 144 (388)
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEecCCCCCCC
Confidence 344566665 7788765554 4456899999999999999754
No 72
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=20.11 E-value=1.3e+02 Score=23.29 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=24.3
Q ss_pred EEEEeceecCHHHHHHHHcCCC--CCCCeEEEEEe
Q 027724 164 VWIIEAKVLSKSELQFLALLPT--LRPKVRVIAEC 196 (219)
Q Consensus 164 LWiiEG~VLS~~EL~~L~~Lp~--~ePrvKVVvEm 196 (219)
-|+|+|..-|.++.+.+..+.. ..|.+-|++++
T Consensus 78 ~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~ 112 (183)
T TIGR01359 78 KFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDC 112 (183)
T ss_pred cEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 3899999999988888776543 35776555554
Done!