BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027725
(219 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ET7|A Chain A, Structural And Spectroscopic Insights Into The Mechanism
Of Oxalate Oxidase
Length = 201
Score = 174 bits (440), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 95/198 (47%), Positives = 123/198 (62%), Gaps = 6/198 (3%)
Query: 23 DPDTLQDVCVAD-TSSGVKVNGFACKDSANITADDFFFAG-LAKPGVVNNSVGSLVTAAN 80
DPD LQD CVAD V VNG CK + DDF F+ L K G + GS VT +
Sbjct: 2 DPDPLQDFCVADLDGKAVSVNGHTCKPMSE-AGDDFLFSSKLTKAGNTSTPNGSAVTELD 60
Query: 81 VEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTAD---KLIS 137
V + PG NTLGVS++R+D+ GG NPPH HPRATE+ V++GEL VG + + D KL S
Sbjct: 61 VAEWPGTNTLGVSMARVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYS 120
Query: 138 KTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLT 197
+ V+ GE +V P+ L+HFQ N G A ++ +FNSQ PG + TLF + PP+P VLT
Sbjct: 121 RVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLT 180
Query: 198 KAFQVGTKEIEKIKSKLA 215
KA +V +E +KSK A
Sbjct: 181 KALRVEAGVVELLKSKFA 198
>pdb|1FI2|A Chain A, Crystal Structure Of Germin (Oxalate Oxidase)
pdb|2ET1|A Chain A, Oxalate Oxidase In Complex With Substrate Analogue
Glycolate
Length = 201
Score = 173 bits (439), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 95/198 (47%), Positives = 123/198 (62%), Gaps = 6/198 (3%)
Query: 23 DPDTLQDVCVAD-TSSGVKVNGFACKDSANITADDFFFAG-LAKPGVVNNSVGSLVTAAN 80
DPD LQD CVAD V VNG CK + DDF F+ L K G + GS VT +
Sbjct: 2 DPDPLQDFCVADLDGKAVSVNGHTCKPMSE-AGDDFLFSSKLTKAGNTSTPNGSAVTELD 60
Query: 81 VEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTAD---KLIS 137
V + PG NTLGVS++R+D+ GG NPPH HPRATE+ V++GEL VG + + D KL S
Sbjct: 61 VAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYS 120
Query: 138 KTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLT 197
+ V+ GE +V P+ L+HFQ N G A ++ +FNSQ PG + TLF + PP+P VLT
Sbjct: 121 RVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLT 180
Query: 198 KAFQVGTKEIEKIKSKLA 215
KA +V +E +KSK A
Sbjct: 181 KALRVEAGVVELLKSKFA 198
>pdb|2ETE|A Chain A, Recombinant Oxalate Oxidase In Complex With Glycolate
pdb|2ETE|B Chain B, Recombinant Oxalate Oxidase In Complex With Glycolate
Length = 201
Score = 173 bits (439), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 95/198 (47%), Positives = 123/198 (62%), Gaps = 6/198 (3%)
Query: 23 DPDTLQDVCVAD-TSSGVKVNGFACKDSANITADDFFFAG-LAKPGVVNNSVGSLVTAAN 80
DPD LQD CVAD V VNG CK + DDF F+ L K G + GS VT +
Sbjct: 2 DPDPLQDFCVADLDGKAVSVNGHTCKPMSE-AGDDFLFSSKLTKAGNTSTPNGSAVTELD 60
Query: 81 VEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTAD---KLIS 137
V + PG NTLGVS++R+D+ GG NPPH HPRATE+ V++GEL VG + + D KL S
Sbjct: 61 VAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYS 120
Query: 138 KTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLT 197
+ V+ GE +V P+ L+HFQ N G A ++ +FNSQ PG + TLF + PP+P VLT
Sbjct: 121 RVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLT 180
Query: 198 KAFQVGTKEIEKIKSKLA 215
KA +V +E +KSK A
Sbjct: 181 KALRVEAGVVELLKSKFA 198
>pdb|2VQA|A Chain A, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|B Chain B, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|C Chain C, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca
Length = 361
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 70/138 (50%), Gaps = 6/138 (4%)
Query: 73 GSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTA 132
G+ + A+ ++ PG + ++ + I E G + H HP A E +VL+GE+D+ ++
Sbjct: 217 GNELRLASAKEFPG--SFNMTGALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASE 274
Query: 133 DKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVP 192
K +++G++ PK H +N+ KP ++ FN QSI + + A+ P
Sbjct: 275 GKASVSRLQQGDVGYVPKGYGHAIRNSSQKPLDIVVVFNDG--DYQSIDLSTWLAS--NP 330
Query: 193 DNVLTKAFQVGTKEIEKI 210
+VL FQ+ + +K+
Sbjct: 331 SSVLGNTFQISPELTKKL 348
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Query: 91 GVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPK 150
G++ + E G + H H A E +V+EG + S K+ V KG ++ FP+
Sbjct: 51 GMAGVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGGLWYFPR 110
Query: 151 ALVHFQKNNGDKPASVISAFNSQLPGTQSIAATL 184
H + G A + FN GT S AT
Sbjct: 111 GWGHSIEGIGPDTAKFLLVFND---GTFSEGATF 141
>pdb|3EHK|A Chain A, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|B Chain B, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|C Chain C, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|D Chain D, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|E Chain E, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|F Chain F, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3FZ3|A Chain A, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|B Chain B, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|C Chain C, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|D Chain D, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|E Chain E, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|F Chain F, Crystal Structure Of Almond Pru1 Protein
Length = 531
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 67/142 (47%), Gaps = 13/142 (9%)
Query: 76 VTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIS-TADK 134
++ N +P L L +S R + G+ PH + A +++V+ G V ++ D
Sbjct: 378 ISTLNSHNLPILRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDA 437
Query: 135 LISKTVKKGEIYVFPK--ALVHFQKNNGDKP---ASVISAFNSQLPGTQSIAATLFTATP 189
++ + V++G++++ P+ ++ N G + + +AF + L G S L
Sbjct: 438 ILDQEVQQGQLFIVPQNHGVIQQAGNQGFEYFAFKTEENAFINTLAGRTSFLRAL----- 492
Query: 190 PVPDNVLTKAFQVGTKEIEKIK 211
PD VL A+Q+ ++ ++K
Sbjct: 493 --PDEVLANAYQISREQARQLK 512
>pdb|1OD5|A Chain A, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
pdb|1OD5|B Chain B, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
Length = 492
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/183 (20%), Positives = 76/183 (41%), Gaps = 20/183 (10%)
Query: 33 ADTSSGVKVNGFACKDSANI---TADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNT 89
T +GV+ N K NI + DF+ N ++ N +P L
Sbjct: 315 CQTRNGVEENICTMKLHENIARPSRADFY-----------NPKAGRISTLNSLTLPALRQ 363
Query: 90 LGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIS-TADKLISKTVKKGEIYVF 148
G+S + G+ PH + A +I+V G+ V ++ + + +++G++ V
Sbjct: 364 FGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGNAVFDGELRRGQLLVV 423
Query: 149 PKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIE 208
P+ V + G++ + F + S +F A +P VL+ ++ +G ++
Sbjct: 424 PQNFV-VAEQGGEQGLEYV-VFKTHHNAVSSYIKDVFRA---IPSEVLSNSYNLGQSQVR 478
Query: 209 KIK 211
++K
Sbjct: 479 QLK 481
>pdb|2D5F|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5F|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|C Chain C, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|D Chain D, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|E Chain E, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|F Chain F, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
Length = 493
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/183 (20%), Positives = 76/183 (41%), Gaps = 20/183 (10%)
Query: 33 ADTSSGVKVNGFACKDSANI---TADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNT 89
T +GV+ N K NI + DF+ N ++ N +P L
Sbjct: 316 CQTRNGVEENICTMKLHENIARPSRADFY-----------NPKAGRISTLNSLTLPALRQ 364
Query: 90 LGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIS-TADKLISKTVKKGEIYVF 148
G+S + G+ PH + A +I+V G+ V ++ + + +++G++ V
Sbjct: 365 FGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNXQGNAVFDGELRRGQLLVV 424
Query: 149 PKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIE 208
P+ V + G++ + F + S +F A +P VL+ ++ +G ++
Sbjct: 425 PQNFV-VAEQGGEQGLEYV-VFKTHHNAVSSYIKDVFRA---IPSEVLSNSYNLGQSQVR 479
Query: 209 KIK 211
++K
Sbjct: 480 QLK 482
>pdb|1FXZ|A Chain A, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|B Chain B, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|C Chain C, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
Length = 476
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 71/152 (46%), Gaps = 6/152 (3%)
Query: 63 AKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEG 122
+ P + N GS+ TA +++ P L+ L +S + PH + A +I+ L G
Sbjct: 310 SSPDIYNPQAGSVTTATSLD-FPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNG 368
Query: 123 ELDVGFIS-TADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASV-ISAFNSQLPGTQSI 180
+ ++ +++ +++G + + P+ V ++ D V ++ + GT +
Sbjct: 369 RALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFKTNDTPMIGTLAG 428
Query: 181 AATLFTATPPVPDNVLTKAFQVGTKEIEKIKS 212
A +L A +P+ V+ F + +++ +IK+
Sbjct: 429 ANSLLNA---LPEEVIQHTFNLKSQQARQIKN 457
>pdb|1UD1|A Chain A, Crystal Structure Of Proglycinin Mutant C88s
pdb|1UD1|B Chain B, Crystal Structure Of Proglycinin Mutant C88s
pdb|1UD1|C Chain C, Crystal Structure Of Proglycinin Mutant C88s
Length = 476
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 71/152 (46%), Gaps = 6/152 (3%)
Query: 63 AKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEG 122
+ P + N GS+ TA +++ P L+ L +S + PH + A +I+ L G
Sbjct: 310 SSPDIYNPQAGSVTTATSLD-FPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNG 368
Query: 123 ELDVGFIS-TADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASV-ISAFNSQLPGTQSI 180
+ ++ +++ +++G + + P+ V ++ D V ++ + GT +
Sbjct: 369 RALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFKTNDTPMIGTLAG 428
Query: 181 AATLFTATPPVPDNVLTKAFQVGTKEIEKIKS 212
A +L A +P+ V+ F + +++ +IK+
Sbjct: 429 ANSLLNA---LPEEVIQHTFNLKSQQARQIKN 457
>pdb|1UCX|A Chain A, Crystal Structure Of Proglycinin C12g Mutant
pdb|1UCX|B Chain B, Crystal Structure Of Proglycinin C12g Mutant
pdb|1UCX|C Chain C, Crystal Structure Of Proglycinin C12g Mutant
Length = 476
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 71/152 (46%), Gaps = 6/152 (3%)
Query: 63 AKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEG 122
+ P + N GS+ TA +++ P L+ L +S + PH + A +I+ L G
Sbjct: 310 SSPDIYNPQAGSVTTATSLD-FPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNG 368
Query: 123 ELDVGFIS-TADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASV-ISAFNSQLPGTQSI 180
+ ++ +++ +++G + + P+ V ++ D V ++ + GT +
Sbjct: 369 RALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFKTNDTPMIGTLAG 428
Query: 181 AATLFTATPPVPDNVLTKAFQVGTKEIEKIKS 212
A +L A +P+ V+ F + +++ +IK+
Sbjct: 429 ANSLLNA---LPEEVIQHTFNLKSQQARQIKN 457
>pdb|1UIK|A Chain A, Crystal Structure Of Soybean Beta-Conglycinin Alpha Prime
Homotrimer
pdb|1UIK|B Chain B, Crystal Structure Of Soybean Beta-Conglycinin Alpha Prime
Homotrimer
pdb|1UIK|C Chain C, Crystal Structure Of Soybean Beta-Conglycinin Alpha Prime
Homotrimer
Length = 418
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 52 ITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHP 111
I+++D F ++ + +N +G L EK P L L V LS +D G L PH +
Sbjct: 212 ISSEDKPFNLRSRDPIYSNKLGKLFEIT-PEKNPQLRDLDVFLSVVDMNEGALFLPHFNS 270
Query: 112 RATEMIFVLEGELDVGFI 129
+A ++ + EGE ++ +
Sbjct: 271 KAIVVLVINEGEANIELV 288
>pdb|2V09|A Chain A, Sens161-164dssn Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 385
Score = 33.5 bits (75), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 32/71 (45%)
Query: 100 EAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNN 159
E G + H HP E + + G+ + ++ + + G++ P A+ H+ +N
Sbjct: 265 EPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENI 324
Query: 160 GDKPASVISAF 170
GD+P + F
Sbjct: 325 GDEPLVFLEIF 335
>pdb|2UYA|A Chain A, Del162-163 Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 383
Score = 33.5 bits (75), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 32/71 (45%)
Query: 100 EAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNN 159
E G + H HP E + + G+ + ++ + + G++ P A+ H+ +N
Sbjct: 263 EPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENI 322
Query: 160 GDKPASVISAF 170
GD+P + F
Sbjct: 323 GDEPLVFLEIF 333
>pdb|2UY9|A Chain A, E162a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 33.5 bits (75), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 32/71 (45%)
Query: 100 EAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNN 159
E G + H HP E + + G+ + ++ + + G++ P A+ H+ +N
Sbjct: 265 EPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENI 324
Query: 160 GDKPASVISAF 170
GD+P + F
Sbjct: 325 GDEPLVFLEIF 335
>pdb|1L3J|A Chain A, Crystal Structure Of Oxalate Decarboxylase Formate Complex
pdb|1UW8|A Chain A, Crystal Structure Of Oxalate Decarboxylase
Length = 385
Score = 33.5 bits (75), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 32/71 (45%)
Query: 100 EAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNN 159
E G + H HP E + + G+ + ++ + + G++ P A+ H+ +N
Sbjct: 265 EPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENI 324
Query: 160 GDKPASVISAF 170
GD+P + F
Sbjct: 325 GDEPLVFLEIF 335
>pdb|2UY8|A Chain A, R92a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 33.5 bits (75), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 32/71 (45%)
Query: 100 EAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNN 159
E G + H HP E + + G+ + ++ + + G++ P A+ H+ +N
Sbjct: 265 EPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENI 324
Query: 160 GDKPASVISAF 170
GD+P + F
Sbjct: 325 GDEPLVFLEIF 335
>pdb|2UYB|A Chain A, S161a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 32/71 (45%)
Query: 100 EAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNN 159
E G + H HP E + + G+ + ++ + + G++ P A+ H+ +N
Sbjct: 265 EPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENI 324
Query: 160 GDKPASVISAF 170
GD+P + F
Sbjct: 325 GDEPLVFLEIF 335
>pdb|3S0M|A Chain A, A Structural Element That Modulates Proton-Coupled
Electron Transfer In Oxalate Decarboxylase
Length = 377
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 32/71 (45%)
Query: 100 EAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNN 159
E G + H HP E + + G+ + ++ + + G++ P A+ H+ +N
Sbjct: 260 EPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENI 319
Query: 160 GDKPASVISAF 170
GD+P + F
Sbjct: 320 GDEPLVFLEIF 330
>pdb|2EAA|A Chain A, Crystal Structure Of Adzuki Bean 7s Globulin-3
pdb|2EAA|B Chain B, Crystal Structure Of Adzuki Bean 7s Globulin-3
pdb|2EAA|C Chain C, Crystal Structure Of Adzuki Bean 7s Globulin-3
Length = 433
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 82 EKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTAD 133
EK P L L V +S +D + G L PH + +A ++ + EGE + + +D
Sbjct: 255 EKNPQLKDLDVFISSVDMKEGALLLPHYNSKAIVIMVINEGEAKIELVGLSD 306
>pdb|3C3V|A Chain A, Crystal Structure Of Peanut Major Allergen Ara H 3
Length = 510
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 65 PGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGEL 124
P + N GSL TA N + L LG+S + L PH + A +I+ L G
Sbjct: 346 PDIYNPQAGSLKTA-NELNLLILRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRA 404
Query: 125 DVGFI-STADKLISKTVKKGEIYVFPK 150
V + S +++ + +++G + V P+
Sbjct: 405 HVQVVDSNGNRVYDEELQEGHVLVVPQ 431
>pdb|2EA7|A Chain A, Crystal Structure Of Adzuki Bean 7s Globulin-1
pdb|2EA7|B Chain B, Crystal Structure Of Adzuki Bean 7s Globulin-1
pdb|2EA7|C Chain C, Crystal Structure Of Adzuki Bean 7s Globulin-1
Length = 434
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 82 EKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTAD 133
EK P L L V +S +D + G L PH +A ++ + EGE + + +D
Sbjct: 256 EKNPQLKDLDVFISSVDMKEGALLLPHYSSKAIVIMVINEGEAKIELVGLSD 307
>pdb|2I45|A Chain A, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
pdb|2I45|B Chain B, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
pdb|2I45|C Chain C, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
pdb|2I45|D Chain D, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
pdb|2I45|E Chain E, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
pdb|2I45|F Chain F, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
pdb|2I45|G Chain G, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
pdb|2I45|H Chain H, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
pdb|2I45|I Chain I, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
pdb|2I45|J Chain J, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
Length = 107
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 108 HTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVH 154
HTH + +++F +EG+ V F S T+++GE V PK++ H
Sbjct: 43 HTHGYSDKVLFAVEGDXAVDFADGG----SXTIREGEXAVVPKSVSH 85
>pdb|1IPJ|A Chain A, Crystal Structures Of Recombinant And Native Soybean
Beta-Conglycinin Beta Homotrimers Complexes With
N-Acetyl-D-Glucosamine
pdb|1IPJ|B Chain B, Crystal Structures Of Recombinant And Native Soybean
Beta-Conglycinin Beta Homotrimers Complexes With
N-Acetyl-D-Glucosamine
pdb|1IPJ|C Chain C, Crystal Structures Of Recombinant And Native Soybean
Beta-Conglycinin Beta Homotrimers Complexes With
N-Acetyl-D-Glucosamine
Length = 416
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 52 ITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHP 111
I+++D F ++ + +N+ G EK P L L + LS +D G L PH +
Sbjct: 210 ISSEDEPFNLRSRNPIYSNNFGKFFEIT-PEKNPQLRDLDIFLSSVDINEGALLLPHFNS 268
Query: 112 RATEMIFVLEGELDVGFI 129
+A ++ + EG+ ++ +
Sbjct: 269 KAIVILVINEGDANIELV 286
>pdb|1UIJ|A Chain A, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|B Chain B, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|C Chain C, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|D Chain D, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|E Chain E, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|F Chain F, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
Length = 416
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 52 ITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHP 111
I+++D F ++ + +N+ G EK P L L + LS +D G L PH +
Sbjct: 210 ISSEDEPFNLRSRNPIYSNNFGKFFEIT-PEKNPQLRDLDIFLSSVDINEGALLLPHFNS 268
Query: 112 RATEMIFVLEGELDVGFI 129
+A ++ + EG+ ++ +
Sbjct: 269 KAIVILVINEGDANIELV 286
>pdb|1IPK|A Chain A, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
pdb|1IPK|B Chain B, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
pdb|1IPK|C Chain C, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
Length = 416
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 52 ITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHP 111
I+++D F ++ + +N+ G EK P L L + LS +D G L PH +
Sbjct: 210 ISSEDEPFNLRSRNPIYSNNFGKFFEIT-PEKNPQLRDLDIFLSSVDINEGALLLPHFNS 268
Query: 112 RATEMIFVLEGELDVGFI 129
+A ++ + EG+ ++ +
Sbjct: 269 KAIVILVINEGDANIELV 286
>pdb|2PHL|A Chain A, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|2PHL|B Chain B, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|2PHL|C Chain C, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|1PHS|A Chain A, The Three-Dimensional Structure Of The Seed Storage
Protein Phaseolin At 3 Angstroms Resolution
Length = 397
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 88 NTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFI 129
N+L V +S I+ E G L PH + +A ++ V EGE V +
Sbjct: 235 NSLNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELV 276
>pdb|3QAC|A Chain A, Structure Of Amaranth 11s Proglobulin Seed Storage Protein
From Amaranthus Hypochondriacus L
Length = 465
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 138 KTVKKGEIYVFPKALVHFQKNNGDKP 163
+ +++G+I+ P + H+ NNGD+P
Sbjct: 132 RHLREGDIFAMPAGVSHWAYNNGDQP 157
>pdb|3D82|A Chain A, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|B Chain B, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|C Chain C, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|D Chain D, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|E Chain E, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
Length = 102
Score = 30.4 bits (67), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 108 HTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVH 154
H H E+ V EG L + F D+ I T++ GE YV PK + H
Sbjct: 45 HEHADTDEVFIVXEGTLQIAF---RDQNI--TLQAGEXYVIPKGVEH 86
>pdb|2CAU|A Chain A, Canavalin From Jack Bean
pdb|2CAV|A Chain A, Canavalin From Jack Bean
Length = 445
Score = 30.0 bits (66), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 60/147 (40%), Gaps = 23/147 (15%)
Query: 18 GVLAVDP-DTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLV 76
GV+ P D +Q++ SS K +++ D F ++ + +N+ G L
Sbjct: 217 GVIVKMPKDQIQEISKHAQSSSRKT----------LSSQDKPFNLRSRDPIYSNNYGKLY 266
Query: 77 TAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFI------- 129
EK L L + L+ + G L PH + RAT ++ EG +V +
Sbjct: 267 EIT-PEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVELVGLEQQQQ 325
Query: 130 ----STADKLISKTVKKGEIYVFPKAL 152
S + + T+ +G+I V P +
Sbjct: 326 QGLESMQLRRYAATLSEGDIIVIPSSF 352
>pdb|3ES1|A Chain A, Crystal Structure Of Protein With A Cupin-Like Fold And
Unknown Function (Yp_001165807.1) From Novosphingobium
Aromaticivorans Dsm 12444 At 1.91 A Resolution
Length = 172
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 82 EKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVK 141
++ GL G S+ R+ G P + + VLEGE+++ D +TV+
Sbjct: 68 QREAGLTLDGGSVIRVVDXLPGKESPXHRTNSIDYGIVLEGEIELEL----DDGAKRTVR 123
Query: 142 KGEIYVFPKALVHFQKNNGDKPASV 166
+G I V + H +N DKP +
Sbjct: 124 QGGIIVQ-RGTNHLWRNTTDKPCRI 147
>pdb|1J58|A Chain A, Crystal Structure Of Oxalate Decarboxylase
Length = 385
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 29/71 (40%)
Query: 100 EAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNN 159
E G H HP E + + G+ ++ + + G++ P A H+ +N
Sbjct: 265 EPGAXRELHWHPNTHEWQYYISGKARXTVFASDGHARTFNYQAGDVGYVPFAXGHYVENI 324
Query: 160 GDKPASVISAF 170
GD+P + F
Sbjct: 325 GDEPLVFLEIF 335
>pdb|3QWL|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 7
Length = 294
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 103 GLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDK 162
G+ PPH A M++ E LDV + +S + E+Y L +Q +G
Sbjct: 66 GILPPHHESHAKVMMYRKEQYLDVLHALKVVRFVSDATPQAEVY-----LRMYQLESGKL 120
Query: 163 PAS 165
P S
Sbjct: 121 PRS 123
>pdb|1CAU|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAV|B Chain B, The Three-Dimensional Structure Of Canavalin From Jack
Bean (Canavalia Ensiformis)
pdb|1CAW|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|D Chain D, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|F Chain F, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
Length = 184
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 12/112 (10%)
Query: 52 ITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHP 111
+++ D F ++ + +N+ G L EK L L + L+ + G L PH +
Sbjct: 2 LSSQDKPFNLRSRDPIYSNNYGKLYEIT-PEKNSQLRDLDILLNCLQMNEGALFVPHYNS 60
Query: 112 RATEMIFVLEGELDVGFI-----------STADKLISKTVKKGEIYVFPKAL 152
RAT ++ EG +V + S + + T+ +G+I V P +
Sbjct: 61 RATVILVANEGRAEVELVGLEQQQQQGLESMQLRRYAATLSEGDIIVIPSSF 112
>pdb|3EO7|A Chain A, Crystal Structure Of A Putative Nitroreductase (Ava_2154)
From Anabaena Variabilis Atcc 29413 At 1.80 A Resolution
Length = 511
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 39/91 (42%), Gaps = 17/91 (18%)
Query: 127 GFISTA--DKLISKTVKKGEIYVFPKA-LVHFQKNNGDKPASVISAFNSQLPGTQSIAAT 183
GFI A D L +++G I V P A L+ Q+N IS PG ++ +
Sbjct: 212 GFIDEAVNDLLYIDPLQEGAIAVLPLADLLDIQQN--------IS------PGCTALPSA 257
Query: 184 LFTATPPVPDNVLTKAFQVGTKEIEKIKSKL 214
T P VPD L K F T+ I KL
Sbjct: 258 TETNYPQVPDGELLKYFHHHTQISASITGKL 288
>pdb|2CV6|A Chain A, Crystal Structure Of 8salpha Globulin, The Major Seed
Storage Protein Of Mungbean
Length = 424
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 82 EKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFI 129
EK P L L + + +D + G L PH + +A ++ + EG+ ++ +
Sbjct: 251 EKNPQLRDLDMFIRSVDMKEGSLLLPHYNSKAIVILVINEGKANIELV 298
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,103,753
Number of Sequences: 62578
Number of extensions: 231236
Number of successful extensions: 577
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 541
Number of HSP's gapped (non-prelim): 45
length of query: 219
length of database: 14,973,337
effective HSP length: 95
effective length of query: 124
effective length of database: 9,028,427
effective search space: 1119524948
effective search space used: 1119524948
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)