Query 027725
Match_columns 219
No_of_seqs 263 out of 1887
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 14:14:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027725.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027725hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03404 bicupin_oxalic bicup 99.9 6.1E-26 1.3E-30 203.4 19.1 162 44-213 201-362 (367)
2 PLN00212 glutelin; Provisional 99.9 5.3E-23 1.2E-27 189.1 18.0 146 66-215 322-470 (493)
3 TIGR03404 bicupin_oxalic bicup 99.9 7.4E-22 1.6E-26 177.1 18.2 135 71-213 48-185 (367)
4 PF00190 Cupin_1: Cupin; Inte 99.9 8.4E-22 1.8E-26 155.1 11.7 126 69-207 10-143 (144)
5 smart00835 Cupin_1 Cupin. This 99.8 3.5E-19 7.5E-24 140.5 16.6 133 71-207 9-145 (146)
6 PLN00212 glutelin; Provisional 99.8 1.9E-18 4.2E-23 159.1 16.1 134 76-213 64-249 (493)
7 COG2140 Thermophilic glucose-6 99.8 3.4E-18 7.4E-23 140.4 11.9 151 53-215 49-201 (209)
8 PF07883 Cupin_2: Cupin domain 99.5 8.9E-14 1.9E-18 95.6 6.7 70 96-170 2-71 (71)
9 COG0662 {ManC} Mannose-6-phosp 99.4 1.7E-12 3.6E-17 100.3 11.8 82 90-176 34-115 (127)
10 PRK13290 ectC L-ectoine syntha 99.4 6.5E-12 1.4E-16 96.8 11.2 80 90-177 33-114 (125)
11 COG1917 Uncharacterized conser 99.4 7E-12 1.5E-16 96.9 11.3 83 85-172 36-118 (131)
12 PRK04190 glucose-6-phosphate i 99.3 2.6E-11 5.6E-16 99.8 13.3 89 86-174 62-158 (191)
13 COG3837 Uncharacterized conser 99.3 1.1E-11 2.4E-16 97.4 9.4 93 81-180 33-128 (161)
14 PRK11171 hypothetical protein; 99.2 2.1E-10 4.5E-15 99.1 14.4 80 89-173 58-138 (266)
15 PRK09943 DNA-binding transcrip 99.2 1.8E-10 4E-15 94.1 11.9 75 91-171 106-181 (185)
16 TIGR01479 GMP_PMI mannose-1-ph 99.2 1.7E-10 3.8E-15 106.9 12.3 78 91-173 375-452 (468)
17 PRK15460 cpsB mannose-1-phosph 99.2 2.3E-10 5E-15 106.1 12.6 78 91-173 384-461 (478)
18 COG4101 Predicted mannose-6-ph 99.2 3E-10 6.4E-15 85.4 9.8 84 91-176 45-128 (142)
19 PF01050 MannoseP_isomer: Mann 99.1 5.5E-10 1.2E-14 88.7 10.4 77 91-172 62-138 (151)
20 TIGR03214 ura-cupin putative a 99.0 3.3E-09 7.1E-14 91.4 11.6 78 91-173 57-135 (260)
21 TIGR03214 ura-cupin putative a 99.0 3E-09 6.5E-14 91.6 10.6 74 91-169 178-251 (260)
22 PRK11171 hypothetical protein; 99.0 3.8E-09 8.3E-14 91.3 10.7 75 91-171 183-258 (266)
23 PF02041 Auxin_BP: Auxin bindi 98.9 2.3E-08 5E-13 78.1 9.8 92 91-183 43-139 (167)
24 PF06560 GPI: Glucose-6-phosph 98.7 1.7E-07 3.7E-12 76.4 11.2 84 90-173 48-147 (182)
25 PRK13264 3-hydroxyanthranilate 98.7 2.2E-07 4.7E-12 75.2 10.5 76 97-176 39-114 (177)
26 TIGR03037 anthran_nbaC 3-hydro 98.7 1.8E-07 4E-12 74.5 9.7 69 100-172 36-104 (159)
27 PF11699 CENP-C_C: Mif2/CENP-C 98.5 6E-07 1.3E-11 64.5 8.4 73 91-169 11-84 (85)
28 PF02311 AraC_binding: AraC-li 98.5 6.1E-07 1.3E-11 67.5 8.4 65 101-171 12-76 (136)
29 PF03079 ARD: ARD/ARD' family; 98.4 2.3E-06 5.1E-11 68.4 10.1 68 104-172 84-151 (157)
30 PF12973 Cupin_7: ChrR Cupin-l 98.4 4.3E-07 9.4E-12 65.8 5.1 66 91-168 23-88 (91)
31 TIGR02451 anti_sig_ChrR anti-s 98.4 1.1E-06 2.5E-11 73.7 8.2 72 92-173 127-198 (215)
32 PRK15457 ethanolamine utilizat 98.4 4.5E-06 9.8E-11 70.1 10.4 69 92-170 157-225 (233)
33 COG1791 Uncharacterized conser 98.3 4.9E-06 1.1E-10 66.5 9.6 71 106-178 89-159 (181)
34 PRK10371 DNA-binding transcrip 98.3 3.9E-06 8.5E-11 73.6 8.6 61 95-161 29-89 (302)
35 COG4297 Uncharacterized protei 98.2 4.5E-06 9.8E-11 64.5 6.9 64 105-171 56-119 (163)
36 PF14499 DUF4437: Domain of un 98.2 3.6E-06 7.7E-11 72.0 6.5 105 52-168 3-107 (251)
37 PF06339 Ectoine_synth: Ectoin 98.1 3.4E-05 7.3E-10 58.9 10.1 82 89-176 32-113 (126)
38 TIGR02272 gentisate_1_2 gentis 98.1 7.6E-06 1.6E-10 72.8 7.2 76 91-171 80-155 (335)
39 COG3257 GlxB Uncharacterized p 98.1 3.3E-05 7.1E-10 64.3 10.0 77 93-174 62-139 (264)
40 PRK10296 DNA-binding transcrip 98.0 3.9E-05 8.5E-10 66.0 9.9 52 102-159 33-84 (278)
41 PRK13500 transcriptional activ 97.9 4.4E-05 9.5E-10 67.2 8.6 55 101-161 57-111 (312)
42 PRK13501 transcriptional activ 97.9 3.7E-05 7.9E-10 66.7 7.9 55 100-160 26-80 (290)
43 TIGR02297 HpaA 4-hydroxyphenyl 97.9 3.4E-05 7.4E-10 66.4 7.4 58 102-164 33-90 (287)
44 PF05523 FdtA: WxcM-like, C-te 97.9 6E-05 1.3E-09 58.5 8.0 76 94-171 34-111 (131)
45 PRK13503 transcriptional activ 97.8 5.2E-05 1.1E-09 64.9 7.3 53 101-159 24-76 (278)
46 COG3435 Gentisate 1,2-dioxygen 97.8 4.4E-05 9.5E-10 66.3 6.5 91 76-171 71-166 (351)
47 KOG2107 Uncharacterized conser 97.8 4E-05 8.7E-10 61.0 5.6 55 105-160 86-140 (179)
48 PF06052 3-HAO: 3-hydroxyanthr 97.8 0.00024 5.3E-09 55.8 9.4 73 96-172 37-109 (151)
49 PRK13502 transcriptional activ 97.8 0.00011 2.4E-09 63.3 8.4 55 100-160 26-80 (282)
50 PF05899 Cupin_3: Protein of u 97.7 0.00016 3.4E-09 50.5 6.3 58 93-157 8-65 (74)
51 TIGR02272 gentisate_1_2 gentis 97.6 0.00027 5.7E-09 63.1 8.6 87 73-169 232-319 (335)
52 PF05995 CDO_I: Cysteine dioxy 97.5 0.0016 3.5E-08 52.9 11.1 84 91-174 74-166 (175)
53 PF06249 EutQ: Ethanolamine ut 97.3 0.00049 1.1E-08 54.6 5.7 68 92-169 77-144 (152)
54 COG4766 EutQ Ethanolamine util 97.2 0.0036 7.8E-08 49.4 9.4 67 93-169 101-167 (176)
55 COG1898 RfbC dTDP-4-dehydrorha 97.1 0.0031 6.7E-08 51.2 8.4 75 101-175 54-140 (173)
56 COG3435 Gentisate 1,2-dioxygen 96.9 0.0035 7.6E-08 54.7 6.9 65 98-169 267-331 (351)
57 PF00908 dTDP_sugar_isom: dTDP 96.8 0.012 2.5E-07 48.0 9.2 77 100-176 51-138 (176)
58 TIGR01221 rmlC dTDP-4-dehydror 96.8 0.022 4.8E-07 46.4 10.8 78 100-177 52-139 (176)
59 COG3450 Predicted enzyme of th 96.7 0.011 2.3E-07 44.9 7.9 57 95-158 48-104 (116)
60 PF04209 HgmA: homogentisate 1 96.6 0.011 2.4E-07 54.3 8.7 106 53-169 87-195 (424)
61 TIGR01015 hmgA homogentisate 1 96.2 0.042 9.1E-07 50.4 9.7 62 105-171 140-201 (429)
62 PRK05341 homogentisate 1,2-dio 96.2 0.045 9.7E-07 50.3 9.8 109 52-169 95-204 (438)
63 PLN02658 homogentisate 1,2-dio 96.0 0.061 1.3E-06 49.4 9.9 109 52-169 88-197 (435)
64 PF13621 Cupin_8: Cupin-like d 95.8 0.053 1.2E-06 45.2 8.2 69 94-163 132-236 (251)
65 PF07385 DUF1498: Protein of u 95.7 0.057 1.2E-06 45.3 7.8 73 97-171 92-187 (225)
66 PF12852 Cupin_6: Cupin 95.7 0.077 1.7E-06 42.9 8.5 44 113-159 35-78 (186)
67 PF02678 Pirin: Pirin; InterP 95.5 0.064 1.4E-06 40.1 6.7 64 102-169 39-105 (107)
68 PF14499 DUF4437: Domain of un 95.5 0.013 2.9E-07 50.2 3.3 76 92-172 171-246 (251)
69 COG3806 ChrR Transcriptional a 95.4 0.11 2.3E-06 43.0 8.2 88 71-173 112-199 (216)
70 COG3822 ABC-type sugar transpo 95.4 0.079 1.7E-06 43.5 7.3 75 96-172 90-187 (225)
71 PRK10572 DNA-binding transcrip 95.3 0.07 1.5E-06 46.0 7.4 50 106-161 43-92 (290)
72 PF08007 Cupin_4: Cupin superf 95.0 0.21 4.6E-06 44.2 9.6 63 97-160 118-200 (319)
73 KOG3995 3-hydroxyanthranilate 94.9 0.04 8.7E-07 45.9 4.5 56 100-157 41-96 (279)
74 COG3257 GlxB Uncharacterized p 94.5 0.18 3.8E-06 42.4 7.2 73 89-167 179-252 (264)
75 COG3508 HmgA Homogentisate 1,2 94.0 0.74 1.6E-05 41.4 10.5 74 90-169 123-196 (427)
76 COG1741 Pirin-related protein 94.0 0.26 5.6E-06 43.0 7.6 71 96-170 48-122 (276)
77 PF05118 Asp_Arg_Hydrox: Aspar 93.9 0.17 3.6E-06 40.6 5.9 71 93-168 81-156 (163)
78 PF13759 2OG-FeII_Oxy_5: Putat 93.9 0.24 5.2E-06 36.2 6.3 66 97-162 5-93 (101)
79 PRK09685 DNA-binding transcrip 93.7 0.48 1E-05 40.9 8.9 65 92-161 45-114 (302)
80 PF07847 DUF1637: Protein of u 93.7 0.48 1E-05 39.4 8.4 86 87-173 39-144 (200)
81 PRK00924 5-keto-4-deoxyuronate 93.6 1.4 3.1E-05 38.4 11.3 84 90-175 173-262 (276)
82 PRK12335 tellurite resistance 93.5 0.42 9E-06 41.5 8.1 61 100-160 19-82 (287)
83 TIGR02466 conserved hypothetic 93.3 0.53 1.2E-05 39.1 8.0 71 93-163 97-190 (201)
84 PF06865 DUF1255: Protein of u 93.3 1 2.2E-05 32.9 8.4 66 97-170 28-93 (94)
85 PF02373 JmjC: JmjC domain, hy 92.6 0.25 5.4E-06 36.2 4.7 29 134-162 79-107 (114)
86 COG5553 Predicted metal-depend 92.6 0.7 1.5E-05 37.1 7.3 79 92-172 73-157 (191)
87 KOG3706 Uncharacterized conser 92.5 0.082 1.8E-06 49.1 2.3 59 100-159 325-404 (629)
88 PRK10579 hypothetical protein; 92.3 2 4.4E-05 31.3 8.9 65 98-170 29-93 (94)
89 PF05726 Pirin_C: Pirin C-term 92.0 0.85 1.8E-05 33.5 6.9 68 95-170 2-69 (104)
90 PF14525 AraC_binding_2: AraC- 91.6 2 4.4E-05 33.2 9.2 66 92-162 34-99 (172)
91 PRK15131 mannose-6-phosphate i 91.2 1.2 2.6E-05 40.7 8.4 59 91-157 320-378 (389)
92 TIGR00218 manA mannose-6-phosp 90.8 1.8 3.8E-05 38.0 8.8 59 91-157 234-292 (302)
93 PLN02288 mannose-6-phosphate i 90.1 0.92 2E-05 41.6 6.6 58 91-152 333-390 (394)
94 KOG2757 Mannose-6-phosphate is 89.5 1.9 4.1E-05 39.0 7.8 74 91-170 332-405 (411)
95 PF09313 DUF1971: Domain of un 88.7 5 0.00011 28.5 8.2 60 102-161 13-75 (82)
96 PRK09391 fixK transcriptional 87.7 6 0.00013 32.9 9.5 77 91-168 35-112 (230)
97 COG2850 Uncharacterized conser 87.6 0.74 1.6E-05 41.6 4.0 61 98-159 125-202 (383)
98 PF11142 DUF2917: Protein of u 87.3 2.2 4.9E-05 28.6 5.4 56 98-158 3-58 (63)
99 PF00027 cNMP_binding: Cyclic 86.9 2.4 5.1E-05 28.9 5.6 48 98-146 3-51 (91)
100 PRK11753 DNA-binding transcrip 85.5 9 0.0002 30.9 9.3 53 95-148 21-74 (211)
101 PF04622 ERG2_Sigma1R: ERG2 an 83.3 5.2 0.00011 33.7 6.9 86 113-206 119-206 (216)
102 COG1482 ManA Phosphomannose is 82.8 8.1 0.00018 34.3 8.2 58 91-156 241-298 (312)
103 PF04962 KduI: KduI/IolB famil 81.8 21 0.00045 30.9 10.3 97 74-174 135-247 (261)
104 PRK13918 CRP/FNR family transc 81.7 6.8 0.00015 31.4 7.0 54 95-148 7-62 (202)
105 COG3123 Uncharacterized protei 79.0 8.5 0.00019 27.5 5.7 43 112-157 40-82 (94)
106 PRK00924 5-keto-4-deoxyuronate 78.7 15 0.00032 32.1 8.4 52 113-169 73-127 (276)
107 PRK03606 ureidoglycolate hydro 78.2 14 0.00029 29.8 7.4 64 106-169 72-140 (162)
108 KOG1417 Homogentisate 1,2-diox 77.9 50 0.0011 29.3 12.0 71 106-181 148-220 (446)
109 PF06172 Cupin_5: Cupin superf 77.0 33 0.00071 26.7 10.7 76 92-168 41-123 (139)
110 PLN02868 acyl-CoA thioesterase 76.5 10 0.00022 34.7 7.1 53 95-148 32-84 (413)
111 PF04115 Ureidogly_hydro: Urei 75.7 13 0.00029 29.7 6.9 65 107-171 74-145 (165)
112 cd00038 CAP_ED effector domain 75.6 13 0.00027 25.8 6.2 53 95-148 18-71 (115)
113 smart00100 cNMP Cyclic nucleot 74.6 20 0.00043 24.8 7.0 53 95-148 18-71 (120)
114 PF04962 KduI: KduI/IolB famil 74.5 14 0.0003 31.9 7.1 69 93-168 28-104 (261)
115 PHA00672 hypothetical protein 73.7 27 0.00058 27.0 7.5 70 91-167 46-115 (152)
116 PHA02984 hypothetical protein; 71.9 27 0.00058 30.4 8.0 51 116-168 96-146 (286)
117 PRK10402 DNA-binding transcrip 69.8 16 0.00036 30.1 6.4 52 96-148 33-85 (226)
118 TIGR00218 manA mannose-6-phosp 66.0 3.4 7.4E-05 36.2 1.5 21 136-156 151-171 (302)
119 COG1482 ManA Phosphomannose is 65.5 5.4 0.00012 35.4 2.6 22 136-157 158-179 (312)
120 COG0664 Crp cAMP-binding prote 64.0 29 0.00064 27.3 6.6 56 94-150 23-79 (214)
121 PHA02890 hypothetical protein; 64.0 47 0.001 28.8 7.8 56 116-175 95-151 (278)
122 COG3717 KduI 5-keto 4-deoxyuro 62.7 37 0.0008 29.1 6.9 87 87-175 172-264 (278)
123 PRK15131 mannose-6-phosphate i 61.9 8.6 0.00019 35.2 3.4 23 135-157 236-258 (389)
124 PRK15186 AraC family transcrip 61.6 26 0.00056 30.7 6.2 46 114-163 39-84 (291)
125 PRK13395 ureidoglycolate hydro 59.3 53 0.0012 26.6 7.2 65 106-170 72-142 (171)
126 PRK11161 fumarate/nitrate redu 58.7 42 0.00091 27.5 6.8 51 97-148 40-91 (235)
127 KOG2130 Phosphatidylserine-spe 57.9 17 0.00037 32.5 4.3 43 134-176 261-303 (407)
128 PRK09392 ftrB transcriptional 57.0 54 0.0012 26.9 7.2 51 96-147 32-82 (236)
129 PF06719 AraC_N: AraC-type tra 54.4 30 0.00065 27.1 4.9 52 113-169 23-77 (155)
130 TIGR03697 NtcA_cyano global ni 53.1 33 0.00072 27.0 5.1 35 113-147 11-46 (193)
131 COG3718 IolB Uncharacterized e 51.5 1.6E+02 0.0034 25.4 8.9 76 83-161 22-102 (270)
132 PRK02290 3-dehydroquinate synt 49.9 45 0.00097 30.1 5.7 84 71-158 250-336 (344)
133 PRK10202 ebgC cryptic beta-D-g 49.3 87 0.0019 24.5 6.8 52 106-157 58-127 (149)
134 COG1741 Pirin-related protein 46.2 2E+02 0.0044 25.1 11.1 41 84-126 166-206 (276)
135 PF13640 2OG-FeII_Oxy_3: 2OG-F 46.2 39 0.00085 23.7 4.1 62 98-159 5-86 (100)
136 PF02787 CPSase_L_D3: Carbamoy 44.8 24 0.00052 26.9 2.9 26 190-215 72-97 (123)
137 PF13994 PgaD: PgaD-like prote 44.8 28 0.00061 26.9 3.3 24 190-213 100-123 (138)
138 PRK14584 hmsS hemin storage sy 43.0 31 0.00068 27.4 3.3 25 189-213 97-121 (153)
139 PRK14585 pgaD putative PGA bio 42.8 29 0.00064 27.0 3.1 25 189-213 88-112 (137)
140 KOG2131 Uncharacterized conser 42.7 29 0.00063 31.6 3.4 63 98-162 203-294 (427)
141 KOG0498 K+-channel ERG and rel 42.5 47 0.001 33.0 5.1 48 98-146 446-493 (727)
142 COG2731 EbgC Beta-galactosidas 42.5 93 0.002 24.8 6.0 59 103-161 59-137 (154)
143 PF14801 GCD14_N: tRNA methylt 42.0 57 0.0012 21.3 3.8 31 125-155 11-41 (54)
144 PF13348 Y_phosphatase3C: Tyro 41.3 27 0.00058 23.2 2.4 23 192-214 45-67 (68)
145 PLN03192 Voltage-dependent pot 41.2 61 0.0013 32.4 5.9 52 94-146 397-448 (823)
146 PF01959 DHQS: 3-dehydroquinat 39.2 82 0.0018 28.6 5.7 85 71-159 260-347 (354)
147 KOG0501 K+-channel KCNQ [Inorg 38.8 46 0.00099 32.4 4.2 58 92-158 569-626 (971)
148 KOG4281 Uncharacterized conser 37.1 20 0.00043 30.2 1.5 84 88-173 71-175 (236)
149 PLN02288 mannose-6-phosphate i 36.9 25 0.00054 32.3 2.2 21 137-157 252-272 (394)
150 PF04074 DUF386: Domain of unk 35.9 1.2E+02 0.0026 23.6 5.7 53 105-157 61-134 (153)
151 PF00325 Crp: Bacterial regula 35.7 42 0.00092 19.4 2.3 25 191-215 3-27 (32)
152 TIGR00022 uncharacterized prot 34.6 2.1E+02 0.0046 22.0 7.1 26 104-129 60-85 (142)
153 KOG0500 Cyclic nucleotide-gate 32.7 84 0.0018 29.8 4.9 47 97-146 333-379 (536)
154 PF13384 HTH_23: Homeodomain-l 32.6 55 0.0012 20.0 2.7 26 190-215 17-42 (50)
155 PF05962 HutD: HutD; InterPro 32.3 53 0.0011 26.7 3.2 33 113-150 135-167 (184)
156 KOG3416 Predicted nucleic acid 28.4 2E+02 0.0044 22.2 5.5 65 85-158 12-80 (134)
157 PF13464 DUF4115: Domain of un 26.1 2.1E+02 0.0046 19.3 7.1 48 120-168 5-53 (77)
158 PF01987 AIM24: Mitochondrial 25.3 1.3E+02 0.0028 24.6 4.5 44 114-158 130-173 (215)
159 KOG1356 Putative transcription 23.6 30 0.00064 34.7 0.3 25 137-161 800-824 (889)
160 PF05777 Acp26Ab: Drosophila a 23.5 73 0.0016 22.6 2.2 25 4-29 2-26 (90)
161 KOG2968 Predicted esterase of 23.4 39 0.00085 34.4 1.1 61 85-146 499-560 (1158)
162 smart00153 VHP Villin headpiec 22.8 93 0.002 18.4 2.3 21 191-211 2-22 (36)
163 PF02209 VHP: Villin headpiece 22.5 93 0.002 18.5 2.2 21 191-211 2-22 (36)
164 PF05721 PhyH: Phytanoyl-CoA d 22.3 1.4E+02 0.003 23.1 4.0 28 135-162 179-207 (211)
165 KOG0499 Cyclic nucleotide-gate 22.3 2.1E+02 0.0046 28.1 5.6 51 94-146 550-600 (815)
166 PHA02699 hypothetical protein; 22.0 2.8E+02 0.006 25.5 6.0 76 95-170 146-225 (466)
167 PRK05467 Fe(II)-dependent oxyg 21.0 2.7E+02 0.0059 23.5 5.6 23 137-159 142-164 (226)
No 1
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.94 E-value=6.1e-26 Score=203.42 Aligned_cols=162 Identities=17% Similarity=0.290 Sum_probs=143.3
Q ss_pred ccccCCCCcCcccccccccCCCCcccCCCCcEEEEecccCCCCCCccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeE
Q 027725 44 FACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGE 123 (219)
Q Consensus 44 ~~ck~p~~~~~~df~~~~~~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~ 123 (219)
.+-+.+....++.|+|+....++. ...|++++.++..+||+++ ++++++++++||++.++|||++++|++||++|+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~p~--~~~gG~~~~~~~~~~p~~~--~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~ 276 (367)
T TIGR03404 201 EAVTGPAGEVPGPFTYHLSEQKPK--QVPGGTVRIADSTNFPVSK--TIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQ 276 (367)
T ss_pred ccCcCCCCCCCccEEEEhhhCCce--ecCCceEEEEChhhccCcc--eEEEEEEEECCCCccCCeeCcCCCeEEEEEEEE
Confidence 334445555566788888766663 3567789999999999988 479999999999999999999999999999999
Q ss_pred EEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEecCCCCccchhchhhhcCCCCCCHHHHHHHcCCC
Q 027725 124 LDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVG 203 (219)
Q Consensus 124 ~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~~~lf~~~~~~~~~vl~~af~~~ 203 (219)
+++++.+++++.+...+++||+++||+|..|+++|.|+++++++++|++..++.+.+++|+. .+|++||+++|+++
T Consensus 277 ~~~~v~d~~g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i~l~~~l~----~~p~~vl~~~~~~~ 352 (367)
T TIGR03404 277 ARMTVFAAGGNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADVSLNQWLA----LTPPQLVAAHLNLD 352 (367)
T ss_pred EEEEEEecCCcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCceeEHHHHHh----hCCHHHHHHHhCcC
Confidence 99999887777668899999999999999999999999999999999999999999988883 59999999999999
Q ss_pred HHHHHHHHhh
Q 027725 204 TKEIEKIKSK 213 (219)
Q Consensus 204 ~~~v~~l~~~ 213 (219)
++++++|++.
T Consensus 353 ~~~~~~l~~~ 362 (367)
T TIGR03404 353 DEVIDSLKKE 362 (367)
T ss_pred HHHHHhcccc
Confidence 9999999864
No 2
>PLN00212 glutelin; Provisional
Probab=99.91 E-value=5.3e-23 Score=189.12 Aligned_cols=146 Identities=18% Similarity=0.353 Sum_probs=127.5
Q ss_pred CcccCCCCcEEEEecccCCCCCCccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccC-CeEEEEEEcCCC
Q 027725 66 GVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTA-DKLISKTVKKGE 144 (219)
Q Consensus 66 ~~~~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~-~~~~~~~L~~GD 144 (219)
.++.++.++.++.++..++|+|+++++++.+++|.||++.+||||++|+|++||++|++++++++++ ++++..+|++||
T Consensus 322 ad~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~Gd 401 (493)
T PLN00212 322 ADTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQ 401 (493)
T ss_pred cCccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCC
Confidence 3455788999999999999999999999999999999999999999999999999999999999877 478889999999
Q ss_pred EEEECCCCeEEEEeCCCCCEEEEEEecCCCCccchhc--hhhhcCCCCCCHHHHHHHcCCCHHHHHHHHhhcC
Q 027725 145 IYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIA--ATLFTATPPVPDNVLTKAFQVGTKEIEKIKSKLA 215 (219)
Q Consensus 145 v~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~--~~lf~~~~~~~~~vl~~af~~~~~~v~~l~~~~~ 215 (219)
+++||+|.+|.... +.+...+++...+.++-...++ .++|+ .||.+||+++|+++.+++++||..+.
T Consensus 402 vfVVPqg~~v~~~A-~~egfe~v~F~tna~~~~s~laG~~Sv~~---alp~eVla~Af~is~eea~~lk~n~~ 470 (493)
T PLN00212 402 LLIIPQHYAVLKKA-EREGCQYIAFKTNANAMVSHIAGKNSIFR---ALPVDVIANAYRISREEARRLKNNRG 470 (493)
T ss_pred EEEECCCCeEEEee-cCCceEEEEeecCCCccccccccHHHHHH---hCCHHHHHHHcCCCHHHHHHHHhccc
Confidence 99999999998765 4666888877666554333333 37787 69999999999999999999998753
No 3
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.89 E-value=7.4e-22 Score=177.11 Aligned_cols=135 Identities=20% Similarity=0.338 Sum_probs=119.0
Q ss_pred CCCcEEEEecccCCCCCCccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECC
Q 027725 71 SVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPK 150 (219)
Q Consensus 71 ~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~ 150 (219)
..|+.++.++..+||++++ +++.++++.||++.++|||. +.|++||++|++++++++++|+.+.+.|++||+++||+
T Consensus 48 ~~gG~~~~~~~~~lP~l~~--ls~~~~~l~pG~~~~~HwH~-~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~fP~ 124 (367)
T TIGR03404 48 ENGGWAREVTVRDLPISTA--IAGVNMRLEPGAIRELHWHK-EAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWYFPP 124 (367)
T ss_pred ccCceEEEeChhhccCccc--ccceEEEEcCCCCCCcccCC-CceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEECC
Confidence 3577899999999999985 69999999999999999996 78999999999999999877887777899999999999
Q ss_pred CCeEEEEeCCCCCEEEEEEecCCC---CccchhchhhhcCCCCCCHHHHHHHcCCCHHHHHHHHhh
Q 027725 151 ALVHFQKNNGDKPASVISAFNSQL---PGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 213 (219)
Q Consensus 151 g~~H~~~N~g~~~a~~l~~~~s~~---pg~~~~~~~lf~~~~~~~~~vl~~af~~~~~~v~~l~~~ 213 (219)
|.+|+++|.+ +.++++.++++.. +..+.+..++ + .+|++||+++|+++++++++|+++
T Consensus 125 g~~H~~~n~~-~~~~~l~vf~~~~f~~~~~~~~~~~l-~---~~p~~Vla~~f~l~~~~~~~l~~~ 185 (367)
T TIGR03404 125 GIPHSLQGLD-EGCEFLLVFDDGNFSEDGTFLVTDWL-A---HTPKDVLAKNFGVPESAFDNLPLK 185 (367)
T ss_pred CCeEEEEECC-CCeEEEEEeCCcccCCcceeeHHHHH-H---hCCHHHHHHHhCCCHHHHHhcccc
Confidence 9999999985 5688888888764 4455666665 6 499999999999999999999874
No 4
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=99.87 E-value=8.4e-22 Score=155.11 Aligned_cols=126 Identities=34% Similarity=0.603 Sum_probs=105.5
Q ss_pred cCCCCcEEEEecccCCCCCCccc-eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCC-----eEEEEE--E
Q 027725 69 NNSVGSLVTAANVEKIPGLNTLG-VSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTAD-----KLISKT--V 140 (219)
Q Consensus 69 ~~~~g~~~~~~~~~~~P~l~~~g-is~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~-----~~~~~~--L 140 (219)
....++.++.++..++|.+.+.. +.+.+..++||++..|||| ++.|+.||++|+++++++.+++ +....+ +
T Consensus 10 ~~~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l 88 (144)
T PF00190_consen 10 VSNEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRL 88 (144)
T ss_dssp EEETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEE
T ss_pred ccCCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCccccceeeeceeee
Confidence 34567789999999999665444 4566667799999999999 8999999999999999998765 344555 9
Q ss_pred cCCCEEEECCCCeEEEEeCCCCCEEEEEEecCCCCccchhchhhhcCCCCCCHHHHHHHcCCCHHHH
Q 027725 141 KKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEI 207 (219)
Q Consensus 141 ~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~~~lf~~~~~~~~~vl~~af~~~~~~v 207 (219)
++||++++|+|.+||+.|.++++...+.++...++... +|+++++++|+++++++
T Consensus 89 ~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~~------------l~~~v~~~~F~~~~~~~ 143 (144)
T PF00190_consen 89 KAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPNQ------------LPPEVLAKAFFLSGEEV 143 (144)
T ss_dssp ETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTGE------------SSHHHHHHHEESSHHHH
T ss_pred ecccceeeccceeEEEEcCCCCCCEEEEEEECCCCccc------------CCcHHHHHhcCCCcCcC
Confidence 99999999999999999999888888888888777665 78999999999999886
No 5
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.83 E-value=3.5e-19 Score=140.49 Aligned_cols=133 Identities=35% Similarity=0.684 Sum_probs=113.1
Q ss_pred CCCcEEEEecccCCCCCCccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccC-CeEEEEEEcCCCEEEEC
Q 027725 71 SVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTA-DKLISKTVKKGEIYVFP 149 (219)
Q Consensus 71 ~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~-~~~~~~~L~~GDv~~~P 149 (219)
..|+.++..+...+|.+++.++.+.+++++||+..++|+|+.+.|++||++|++++.+.++. ++...+.+++||++++|
T Consensus 9 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip 88 (146)
T smart00835 9 NEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVP 88 (146)
T ss_pred CCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEEC
Confidence 45667888888899999999999999999999999999998789999999999999987753 35567899999999999
Q ss_pred CCCeEEEEeCCCCCEEEEEEecCCCCccch---hchhhhcCCCCCCHHHHHHHcCCCHHHH
Q 027725 150 KALVHFQKNNGDKPASVISAFNSQLPGTQS---IAATLFTATPPVPDNVLTKAFQVGTKEI 207 (219)
Q Consensus 150 ~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~---~~~~lf~~~~~~~~~vl~~af~~~~~~v 207 (219)
+|..|++.|.+++++++++ +.+++|..-. -..++|+ ++++++++++|+++++++
T Consensus 89 ~g~~H~~~n~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 145 (146)
T smart00835 89 QGHPHFQVNSGDENLEFVA-FNTNDPNRRFFLAGRNSVLR---GLPPEVLAAAFGVSAEEV 145 (146)
T ss_pred CCCEEEEEcCCCCCEEEEE-EecCCCCceeEeecccchhh---cCCHHHHHHHhCcChHHc
Confidence 9999999999999999995 5555655322 1235666 799999999999999875
No 6
>PLN00212 glutelin; Provisional
Probab=99.79 E-value=1.9e-18 Score=159.10 Aligned_cols=134 Identities=19% Similarity=0.355 Sum_probs=111.8
Q ss_pred EEEecccCCCCCCccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCC-----e----------------
Q 027725 76 VTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTAD-----K---------------- 134 (219)
Q Consensus 76 ~~~~~~~~~P~l~~~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~-----~---------------- 134 (219)
++..+-.+.+.+.+.|+++.|++++|+++..||+| ++.+++||++|++.++++.+.- +
T Consensus 64 ~~E~~~~~~~q~~caGv~~~R~~i~p~gL~lP~y~-na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~~~~~~~ 142 (493)
T PLN00212 64 VTEYFDEKNEQFQCTGVFVIRRVIEPQGLLLPRYS-NTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQSQSQKF 142 (493)
T ss_pred eeeecCCCChhhcccceEEEEEEecCCcccCcccc-CCCeEEEEEeCeEEEEEEeCCCcchhhhhccccccccccccccc
Confidence 44444477899999999999999999999999999 5999999999999999996410 1
Q ss_pred ----EEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEecCCCCc--------cchhc-------------------hh
Q 027725 135 ----LISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPG--------TQSIA-------------------AT 183 (219)
Q Consensus 135 ----~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg--------~~~~~-------------------~~ 183 (219)
...+.|++||++++|+|++||++|.|+++++++++++..++. .+.++ .+
T Consensus 143 ~d~hqkv~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~~~~~~~~~~~~~~n 222 (493)
T PLN00212 143 RDEHQKIHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQQVYGRSIEQHSGQN 222 (493)
T ss_pred ccccccceEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccccccccCCCcceeeccCCCccccccccccccccccCc
Confidence 013689999999999999999999999999999888765532 22232 24
Q ss_pred hhcCCCCCCHHHHHHHcCCCHHHHHHHHhh
Q 027725 184 LFTATPPVPDNVLTKAFQVGTKEIEKIKSK 213 (219)
Q Consensus 184 lf~~~~~~~~~vl~~af~~~~~~v~~l~~~ 213 (219)
+|+ +|++++|+.||+++.++++||+.+
T Consensus 223 ifs---GF~~e~La~Afnv~~e~~~klq~~ 249 (493)
T PLN00212 223 IFS---GFSTELLSEALGINAQVAKRLQSQ 249 (493)
T ss_pred hhh---cCCHHHHHHHHCCCHHHHHHHhcc
Confidence 887 899999999999999999999854
No 7
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=99.77 E-value=3.4e-18 Score=140.41 Aligned_cols=151 Identities=21% Similarity=0.316 Sum_probs=131.2
Q ss_pred CcccccccccCCCCcccCCCCcEEEEecccCCCCCCccceEEEEEEEcCCCcCCCCCCCCCcE--EEEEEeeEEEEEEEc
Q 027725 53 TADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATE--MIFVLEGELDVGFIS 130 (219)
Q Consensus 53 ~~~df~~~~~~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pg~~~~pH~H~~a~E--~~~Vl~G~~~v~~~~ 130 (219)
..++|+|..+.+.+. ..|+.++......+|+. ....+.+.||++...||||+++| +.||++|++++.+..
T Consensus 49 ~~~~~~yel~~~~~~---~~~g~L~~~~t~~~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~ 120 (209)
T COG2140 49 KEDDFVYELLESEPG---ERGGDLRLDVTRIFPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQK 120 (209)
T ss_pred CCCceEEEeeccccc---ccCCeEEEEeeccCCCc-----cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEc
Confidence 567888887655432 22778888888899976 45667899999999999999999 999999999999999
Q ss_pred cCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEecCCCCccchhchhhhcCCCCCCHHHHHHHcCCCHHHHHHH
Q 027725 131 TADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKI 210 (219)
Q Consensus 131 ~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~~~lf~~~~~~~~~vl~~af~~~~~~v~~l 210 (219)
++|+..+..+++||++++|++..|+..|+|+++++++.++....+....+..+++ +++..+++..++.+.+..+.+
T Consensus 121 ~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~~~~~y~~~~~~~----~~~~~~~~~~~~~~~~~~D~p 196 (209)
T COG2140 121 PEGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPADAGQDYDLIAWLG----GMPPVLVENGLNKNPKYVDVP 196 (209)
T ss_pred CCCcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCCCCceeeeeehhc----cCCceeeccccccCcccccCc
Confidence 9899889999999999999999999999999999999999998888888888875 478888999999888888887
Q ss_pred HhhcC
Q 027725 211 KSKLA 215 (219)
Q Consensus 211 ~~~~~ 215 (219)
+.++.
T Consensus 197 ~~~~~ 201 (209)
T COG2140 197 RIKFA 201 (209)
T ss_pred ccccc
Confidence 76665
No 8
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=99.48 E-value=8.9e-14 Score=95.57 Aligned_cols=70 Identities=30% Similarity=0.574 Sum_probs=63.3
Q ss_pred EEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEe
Q 027725 96 RIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAF 170 (219)
Q Consensus 96 ~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~ 170 (219)
+++++||+..++|+|+..+|++||++|++++.+.+ + ...+++||.+++|+|..|...|.++++++++.++
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~~---~--~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~ 71 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTVDG---E--RVELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY 71 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEEETT---E--EEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEEEcc---E--EeEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 57899999999999986559999999999998543 4 7899999999999999999999999999999875
No 9
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=1.7e-12 Score=100.25 Aligned_cols=82 Identities=27% Similarity=0.308 Sum_probs=74.0
Q ss_pred cceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEE
Q 027725 90 LGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISA 169 (219)
Q Consensus 90 ~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~ 169 (219)
...++.++.++||....+|.|.+.+|++||++|++.+.+.+. ...|++||++++|+|..|+..|.|..+++++++
T Consensus 34 ~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~~-----~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei 108 (127)
T COG0662 34 DRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGGE-----EVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEV 108 (127)
T ss_pred CcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECCE-----EEEecCCCEEEECCCCcEEEEcCCCcceEEEEE
Confidence 356899999999999988888888999999999999998754 789999999999999999999999999999999
Q ss_pred ecCCCCc
Q 027725 170 FNSQLPG 176 (219)
Q Consensus 170 ~~s~~pg 176 (219)
......+
T Consensus 109 ~~p~~~~ 115 (127)
T COG0662 109 QSPPYLG 115 (127)
T ss_pred ecCCcCC
Confidence 7766554
No 10
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=99.38 E-value=6.5e-12 Score=96.78 Aligned_cols=80 Identities=23% Similarity=0.437 Sum_probs=69.9
Q ss_pred cceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEE-EE-ccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEE
Q 027725 90 LGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVG-FI-STADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVI 167 (219)
Q Consensus 90 ~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~-~~-~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l 167 (219)
.++++.+..++||+..+.|+|.. .|++||++|++++. +. + + .+.|++||++++|++.+|.+.|. ++++++
T Consensus 33 ~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~~g---~--~~~L~aGD~i~~~~~~~H~~~N~--e~~~~l 104 (125)
T PRK13290 33 MGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLATG---E--VHPIRPGTMYALDKHDRHYLRAG--EDMRLV 104 (125)
T ss_pred CCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcCCC---E--EEEeCCCeEEEECCCCcEEEEcC--CCEEEE
Confidence 35788999999999999999974 79999999999998 53 4 3 78999999999999999999997 899999
Q ss_pred EEecCCCCcc
Q 027725 168 SAFNSQLPGT 177 (219)
Q Consensus 168 ~~~~s~~pg~ 177 (219)
++++...+|.
T Consensus 105 ~v~tP~~~~~ 114 (125)
T PRK13290 105 CVFNPPLTGR 114 (125)
T ss_pred EEECCCCCCc
Confidence 9988665553
No 11
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.37 E-value=7e-12 Score=96.86 Aligned_cols=83 Identities=31% Similarity=0.513 Sum_probs=71.2
Q ss_pred CCCCccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCE
Q 027725 85 PGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPA 164 (219)
Q Consensus 85 P~l~~~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a 164 (219)
+...+..+.+.++.++||+..+.|+||...+.+||++|++++++.++ .+++++||++++|+|..|+..|.++.+.
T Consensus 36 ~~~~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~g~-----~~~l~~Gd~i~ip~g~~H~~~a~~~~~~ 110 (131)
T COG1917 36 PRNEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLEGE-----KKELKAGDVIIIPPGVVHGLKAVEDEPM 110 (131)
T ss_pred cCCCCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEecCC-----ceEecCCCEEEECCCCeeeeccCCCCce
Confidence 33344567889999999999999999867899999999999998744 7899999999999999999999988876
Q ss_pred EEEEEecC
Q 027725 165 SVISAFNS 172 (219)
Q Consensus 165 ~~l~~~~s 172 (219)
..+++...
T Consensus 111 ~~l~v~~~ 118 (131)
T COG1917 111 VLLLVFPL 118 (131)
T ss_pred eEEEEeee
Confidence 66666654
No 12
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=99.34 E-value=2.6e-11 Score=99.77 Aligned_cols=89 Identities=16% Similarity=0.243 Sum_probs=76.6
Q ss_pred CCCccceEEEEEEEcCCCc------CCCCCCCCC--cEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEE
Q 027725 86 GLNTLGVSLSRIDYEAGGL------NPPHTHPRA--TEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQK 157 (219)
Q Consensus 86 ~l~~~gis~~~~~l~pg~~------~~pH~H~~a--~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~ 157 (219)
..+..++.+....++||.. .+.|+|+.. .|+.||++|++.+.+.+.+|......+++||++++|+|..|...
T Consensus 62 ~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~i 141 (191)
T PRK04190 62 EETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAHRSV 141 (191)
T ss_pred CCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcEEeE
Confidence 3455568899999999996 567999754 49999999999999987766656789999999999999999999
Q ss_pred eCCCCCEEEEEEecCCC
Q 027725 158 NNGDKPASVISAFNSQL 174 (219)
Q Consensus 158 N~g~~~a~~l~~~~s~~ 174 (219)
|+|++++++++++....
T Consensus 142 N~G~epl~fl~v~p~~~ 158 (191)
T PRK04190 142 NTGDEPLVFLACYPADA 158 (191)
T ss_pred ECCCCCEEEEEEEcCCc
Confidence 99999999999887653
No 13
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.32 E-value=1.1e-11 Score=97.39 Aligned_cols=93 Identities=20% Similarity=0.258 Sum_probs=76.9
Q ss_pred ccCCCCCCccceEEEEEEEcCCCc-CCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCC--CeEEEE
Q 027725 81 VEKIPGLNTLGVSLSRIDYEAGGL-NPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKA--LVHFQK 157 (219)
Q Consensus 81 ~~~~P~l~~~gis~~~~~l~pg~~-~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g--~~H~~~ 157 (219)
...+-+|...| +....++||+. ...|||...+|++||++|++++.+.+. .+.|++||++-||+| ..|.++
T Consensus 33 lG~~~Gl~~fG--vn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~~-----e~~lrpGD~~gFpAG~~~aHhli 105 (161)
T COG3837 33 LGDALGLKRFG--VNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDGG-----ETRLRPGDSAGFPAGVGNAHHLI 105 (161)
T ss_pred hhhhcChhhcc--cceEEeCCCCccccccccccCceEEEEEcCceEEEECCe-----eEEecCCceeeccCCCcceeEEe
Confidence 45566777554 45567899986 578999999999999999999988664 789999999999999 999999
Q ss_pred eCCCCCEEEEEEecCCCCccchh
Q 027725 158 NNGDKPASVISAFNSQLPGTQSI 180 (219)
Q Consensus 158 N~g~~~a~~l~~~~s~~pg~~~~ 180 (219)
|.|+..++++++-+...-....+
T Consensus 106 N~s~~~~~yL~vG~r~~~d~i~Y 128 (161)
T COG3837 106 NRSDVILRYLEVGTREPDDIITY 128 (161)
T ss_pred ecCCceEEEEEeccccccceeec
Confidence 99999999999977655444444
No 14
>PRK11171 hypothetical protein; Provisional
Probab=99.24 E-value=2.1e-10 Score=99.12 Aligned_cols=80 Identities=19% Similarity=0.230 Sum_probs=69.6
Q ss_pred ccceEEEEEEEcCCCcCCCCCCC-CCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEE
Q 027725 89 TLGVSLSRIDYEAGGLNPPHTHP-RATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVI 167 (219)
Q Consensus 89 ~~gis~~~~~l~pg~~~~pH~H~-~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l 167 (219)
...+.+.+++++||+....|.|+ ..+|++||++|++++.+.+. .+.|++||++++|++..|.+.|.|+++++++
T Consensus 58 ~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~~g~-----~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l 132 (266)
T PRK11171 58 GATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTLEGK-----THALSEGGYAYLPPGSDWTLRNAGAEDARFH 132 (266)
T ss_pred CCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEECCE-----EEEECCCCEEEECCCCCEEEEECCCCCEEEE
Confidence 34678999999999987777765 46899999999999998654 7899999999999999999999999999999
Q ss_pred EEecCC
Q 027725 168 SAFNSQ 173 (219)
Q Consensus 168 ~~~~s~ 173 (219)
++....
T Consensus 133 ~v~~~y 138 (266)
T PRK11171 133 WIRKRY 138 (266)
T ss_pred EEEcCC
Confidence 986543
No 15
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=99.21 E-value=1.8e-10 Score=94.10 Aligned_cols=75 Identities=21% Similarity=0.275 Sum_probs=65.2
Q ss_pred ceEEEEEEEcCCCcC-CCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEE
Q 027725 91 GVSLSRIDYEAGGLN-PPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISA 169 (219)
Q Consensus 91 gis~~~~~l~pg~~~-~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~ 169 (219)
.+.+.+..++||+.. ..|+|+ ..|++||++|++++.+.+. .+.|++||+++||++.+|.+.|.++++++++++
T Consensus 106 ~~~~~~~~~~pg~~~~~~~~h~-~~E~~~Vl~G~~~~~~~~~-----~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~ 179 (185)
T PRK09943 106 TLAMIFETYQPGTTTGERIKHQ-GEEIGTVLEGEIVLTINGQ-----DYHLVAGQSYAINTGIPHSFSNTSAGICRIISA 179 (185)
T ss_pred eeEEEEEEccCCCCcccccccC-CcEEEEEEEeEEEEEECCE-----EEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEE
Confidence 456777789999865 466676 7999999999999998654 789999999999999999999999999999988
Q ss_pred ec
Q 027725 170 FN 171 (219)
Q Consensus 170 ~~ 171 (219)
..
T Consensus 180 ~~ 181 (185)
T PRK09943 180 HT 181 (185)
T ss_pred eC
Confidence 65
No 16
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.20 E-value=1.7e-10 Score=106.94 Aligned_cols=78 Identities=19% Similarity=0.255 Sum_probs=71.1
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEe
Q 027725 91 GVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAF 170 (219)
Q Consensus 91 gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~ 170 (219)
++.+.++.++||+..++|+|+...|.+||++|++++.+.+. .+.|++||++++|+|.+|.+.|.|+++++++++.
T Consensus 375 ~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg~-----~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~ 449 (468)
T TIGR01479 375 RYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIGDE-----TLLLTENESTYIPLGVIHRLENPGKIPLELIEVQ 449 (468)
T ss_pred CEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEECCE-----EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEE
Confidence 57889999999998888998888999999999999998654 7899999999999999999999999999999997
Q ss_pred cCC
Q 027725 171 NSQ 173 (219)
Q Consensus 171 ~s~ 173 (219)
...
T Consensus 450 ~~~ 452 (468)
T TIGR01479 450 SGS 452 (468)
T ss_pred cCC
Confidence 654
No 17
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.19 E-value=2.3e-10 Score=106.12 Aligned_cols=78 Identities=21% Similarity=0.241 Sum_probs=70.7
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEe
Q 027725 91 GVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAF 170 (219)
Q Consensus 91 gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~ 170 (219)
++.+.+++++||+....|+|...+|.+||++|++++.+.+. .+.|++||+++||+|.+|++.|.|+++++++++.
T Consensus 384 ~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg~-----~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V~ 458 (478)
T PRK15460 384 RYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDGD-----IKLLGENESIYIPLGATHCLENPGKIPLDLIEVR 458 (478)
T ss_pred cEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECCE-----EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEE
Confidence 57889999999998877888778899999999999998764 8899999999999999999999999999999996
Q ss_pred cCC
Q 027725 171 NSQ 173 (219)
Q Consensus 171 ~s~ 173 (219)
...
T Consensus 459 ~g~ 461 (478)
T PRK15460 459 SGS 461 (478)
T ss_pred cCC
Confidence 654
No 18
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.16 E-value=3e-10 Score=85.39 Aligned_cols=84 Identities=21% Similarity=0.337 Sum_probs=74.1
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEe
Q 027725 91 GVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAF 170 (219)
Q Consensus 91 gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~ 170 (219)
++.+-.++++||+....|.|.+-+..+||++|+...++++. -.+..+.++||.+++|+|++|.-.|.+++++..+.+.
T Consensus 45 ~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~r--LE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vIaR 122 (142)
T COG4101 45 GICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNR--LEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVIAR 122 (142)
T ss_pred eeeEEEEeeCCCccccccccccccEEEEEEeceeeeeeccc--eeeeEEecCCCeEEcCCCCCCcccccCCCCeEEEEEc
Confidence 67888899999999999999988889999999999999764 2346788999999999999999999999999998887
Q ss_pred cCCCCc
Q 027725 171 NSQLPG 176 (219)
Q Consensus 171 ~s~~pg 176 (219)
+..++.
T Consensus 123 sDp~~~ 128 (142)
T COG4101 123 SDPNPQ 128 (142)
T ss_pred cCCCCC
Confidence 766654
No 19
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=99.13 E-value=5.5e-10 Score=88.73 Aligned_cols=77 Identities=23% Similarity=0.336 Sum_probs=70.9
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEe
Q 027725 91 GVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAF 170 (219)
Q Consensus 91 gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~ 170 (219)
+..+.++.+.||.....|.|...+|.++|++|++.+.+.+. .+.+++||++++|+|..|++.|.|+.++.++.+-
T Consensus 62 ~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~~~-----~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IEVq 136 (151)
T PF01050_consen 62 GYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLDDE-----EFTLKEGDSVYIPRGAKHRIENPGKTPLEIIEVQ 136 (151)
T ss_pred CEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEECCE-----EEEEcCCCEEEECCCCEEEEECCCCcCcEEEEEe
Confidence 57889999999999999999889999999999999998654 7899999999999999999999999999999885
Q ss_pred cC
Q 027725 171 NS 172 (219)
Q Consensus 171 ~s 172 (219)
..
T Consensus 137 ~G 138 (151)
T PF01050_consen 137 TG 138 (151)
T ss_pred cC
Confidence 54
No 20
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.02 E-value=3.3e-09 Score=91.43 Aligned_cols=78 Identities=15% Similarity=0.175 Sum_probs=66.9
Q ss_pred ceEEEEEEEcCCCcC-CCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEE
Q 027725 91 GVSLSRIDYEAGGLN-PPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISA 169 (219)
Q Consensus 91 gis~~~~~l~pg~~~-~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~ 169 (219)
.+.+.+++++||+.. .+|.|+..+|++||++|++++.+.++ .+.|++||.+++|+|..|.+.|.++++++++.+
T Consensus 57 ~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~~g~-----~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l~v 131 (260)
T TIGR03214 57 TFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTAEGE-----THELREGGYAYLPPGSKWTLANAQAEDARFFLY 131 (260)
T ss_pred cEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEECCE-----EEEECCCCEEEECCCCCEEEEECCCCCEEEEEE
Confidence 578899999998764 45667655899999999999987654 789999999999999999999999999999987
Q ss_pred ecCC
Q 027725 170 FNSQ 173 (219)
Q Consensus 170 ~~s~ 173 (219)
...-
T Consensus 132 ~k~y 135 (260)
T TIGR03214 132 KKRY 135 (260)
T ss_pred Eeee
Confidence 6543
No 21
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.00 E-value=3e-09 Score=91.65 Aligned_cols=74 Identities=14% Similarity=0.122 Sum_probs=63.7
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEE
Q 027725 91 GVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISA 169 (219)
Q Consensus 91 gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~ 169 (219)
.+.+.+++++||+..+.|.|..-+|.+||++|++.+...+ + ...+++||++++|++.+|+++|.|+++++++--
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~~g---~--~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~y 251 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNLDN---N--WVPVEAGDYIWMGAYCPQACYAGGRGEFRYLLY 251 (260)
T ss_pred CcEEEEEEECCCcccCCcccccceeEEEEEeceEEEEECC---E--EEEecCCCEEEECCCCCEEEEecCCCcEEEEEE
Confidence 5678889999999999644434688899999999998755 3 789999999999999999999999999998754
No 22
>PRK11171 hypothetical protein; Provisional
Probab=98.99 E-value=3.8e-09 Score=91.29 Aligned_cols=75 Identities=17% Similarity=0.178 Sum_probs=66.4
Q ss_pred ceEEEEEEEcCCCcCCCC-CCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEE
Q 027725 91 GVSLSRIDYEAGGLNPPH-THPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISA 169 (219)
Q Consensus 91 gis~~~~~l~pg~~~~pH-~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~ 169 (219)
.+.+.+++++||+..+.| .|. .+|.+||++|++++.+.++ .+.|++||++.++++.+|++.|.|+++++++..
T Consensus 183 ~~~~~~~~l~PG~~~~~~~~~~-~ee~i~Vl~G~~~~~~~~~-----~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~~ 256 (266)
T PRK11171 183 DMHVNIVTFEPGASIPFVETHV-MEHGLYVLEGKGVYRLNND-----WVEVEAGDFIWMRAYCPQACYAGGPGPFRYLLY 256 (266)
T ss_pred CcEEEEEEECCCCEEccCcCCC-ceEEEEEEeCEEEEEECCE-----EEEeCCCCEEEECCCCCEEEECCCCCcEEEEEE
Confidence 358899999999998885 565 8999999999999987654 889999999999999999999999999999876
Q ss_pred ec
Q 027725 170 FN 171 (219)
Q Consensus 170 ~~ 171 (219)
-+
T Consensus 257 k~ 258 (266)
T PRK11171 257 KD 258 (266)
T ss_pred cc
Confidence 54
No 23
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=98.86 E-value=2.3e-08 Score=78.09 Aligned_cols=92 Identities=16% Similarity=0.160 Sum_probs=59.1
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccC----CeEEEEEEcCCCEEEECCCCeEEEEeCCC-CCEE
Q 027725 91 GVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTA----DKLISKTVKKGEIYVFPKALVHFQKNNGD-KPAS 165 (219)
Q Consensus 91 gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~----~~~~~~~L~~GDv~~~P~g~~H~~~N~g~-~~a~ 165 (219)
.+.+.+-++.||...++|.|. .+|+++|++|+++..+.... |+.....+.+++.+.||.+..|..+|+++ +++.
T Consensus 43 evEVwlQTfAPG~~TPiHRHs-CEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlq 121 (167)
T PF02041_consen 43 EVEVWLQTFAPGSATPIHRHS-CEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQ 121 (167)
T ss_dssp SEEEEEEEE-TT-B--EEEES-S-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EE
T ss_pred eeeEEeeeecCCCCCCCcccc-ccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCCCCcceE
Confidence 358888999999999999997 89999999999999988653 56667899999999999999999999994 8999
Q ss_pred EEEEecCCCCccchhchh
Q 027725 166 VISAFNSQLPGTQSIAAT 183 (219)
Q Consensus 166 ~l~~~~s~~pg~~~~~~~ 183 (219)
++++.+..--..+.+.+|
T Consensus 122 vlViiSrpPvkvf~y~dw 139 (167)
T PF02041_consen 122 VLVIISRPPVKVFIYDDW 139 (167)
T ss_dssp EEEEEESSS--EEEESST
T ss_pred EEEEecCCCeEEEEeccc
Confidence 998877544344444444
No 24
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.72 E-value=1.7e-07 Score=76.45 Aligned_cols=84 Identities=21% Similarity=0.271 Sum_probs=58.1
Q ss_pred cceEEEEEEEcCCCc------CCCCCCCC------CcEEEEEEeeEEEEEEEccCC----eEEEEEEcCCCEEEECCCCe
Q 027725 90 LGVSLSRIDYEAGGL------NPPHTHPR------ATEMIFVLEGELDVGFISTAD----KLISKTVKKGEIYVFPKALV 153 (219)
Q Consensus 90 ~gis~~~~~l~pg~~------~~pH~H~~------a~E~~~Vl~G~~~v~~~~~~~----~~~~~~L~~GDv~~~P~g~~ 153 (219)
.++..-...+.||.+ ..-|+|+. ..|+.+|++|++.+.+-+.++ +.+...+++||+++||++..
T Consensus 48 ~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~ya 127 (182)
T PF06560_consen 48 RNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPGYA 127 (182)
T ss_dssp --EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT-E
T ss_pred eeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCCce
Confidence 356666677888763 45799987 789999999999999998877 77788999999999999999
Q ss_pred EEEEeCCCCCEEEEEEecCC
Q 027725 154 HFQKNNGDKPASVISAFNSQ 173 (219)
Q Consensus 154 H~~~N~g~~~a~~l~~~~s~ 173 (219)
|...|+|++++++.....+.
T Consensus 128 H~tIN~g~~~L~~~~~~~~~ 147 (182)
T PF06560_consen 128 HRTINTGDEPLVFAAWVPRD 147 (182)
T ss_dssp EEEEE-SSS-EEEEEEEETT
T ss_pred EEEEECCCCcEEEEEEEecC
Confidence 99999999999999887754
No 25
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.68 E-value=2.2e-07 Score=75.22 Aligned_cols=76 Identities=16% Similarity=0.279 Sum_probs=59.1
Q ss_pred EEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEecCCCCc
Q 027725 97 IDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPG 176 (219)
Q Consensus 97 ~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg 176 (219)
+.=.||.....|+|+ ++|++|+++|++.+.+.+ +|+.....|++||++++|+|++|..+.. +..+.+.+-....++
T Consensus 39 vvgGpn~r~d~H~~~-tdE~FyqleG~~~l~v~d-~g~~~~v~L~eGd~fllP~gvpHsP~r~--~~tv~LviE~~r~~~ 114 (177)
T PRK13264 39 VVGGPNARTDFHYDP-GEEFFYQLEGDMYLKVQE-DGKRRDVPIREGEMFLLPPHVPHSPQRE--AGSIGLVIERKRPEG 114 (177)
T ss_pred EEccCCcccccccCC-CceEEEEECCeEEEEEEc-CCceeeEEECCCCEEEeCCCCCcCCccC--CCeEEEEEEeCCCCC
Confidence 333677788899998 899999999999999987 4555588999999999999999998763 445555553333333
No 26
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.67 E-value=1.8e-07 Score=74.49 Aligned_cols=69 Identities=16% Similarity=0.302 Sum_probs=54.8
Q ss_pred cCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEecC
Q 027725 100 EAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNS 172 (219)
Q Consensus 100 ~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s 172 (219)
.||.....|.|+ .+|++|+++|++.+.+.+ +|+.....|++||++++|+|++|..... +..+.+.+=..
T Consensus 36 Gpn~R~d~H~~~-tdE~FyqleG~~~l~v~d-~g~~~~v~L~eGd~flvP~gvpHsP~r~--~~t~~LvIE~~ 104 (159)
T TIGR03037 36 GPNARTDFHDDP-GEEFFYQLKGEMYLKVTE-EGKREDVPIREGDIFLLPPHVPHSPQRP--AGSIGLVIERK 104 (159)
T ss_pred CCCCCcccccCC-CceEEEEEcceEEEEEEc-CCcEEEEEECCCCEEEeCCCCCcccccC--CCcEEEEEEeC
Confidence 566667789887 899999999999999876 4555678999999999999999998764 33444444333
No 27
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=98.54 E-value=6e-07 Score=64.55 Aligned_cols=73 Identities=25% Similarity=0.403 Sum_probs=55.5
Q ss_pred ceEEEEEEEcCCCcCCC-CCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEE
Q 027725 91 GVSLSRIDYEAGGLNPP-HTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISA 169 (219)
Q Consensus 91 gis~~~~~l~pg~~~~p-H~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~ 169 (219)
.++...++|+|++.-++ +.+ +..-++||++|.+++.+.+. ...+.+|+++.+|+|-...+.|.++++++++.+
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~-~~~~vF~V~~G~v~Vti~~~-----~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~LfF~ 84 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSR-DNTMVFYVIKGKVEVTIHET-----SFVVTKGGSFQVPRGNYYSIKNIGNEEAKLFFV 84 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE---SEEEEEEEEESEEEEEETTE-----EEEEETT-EEEE-TT-EEEEEE-SSS-EEEEEE
T ss_pred CceeEEEEeCCCCccCCcccC-CcEEEEEEEeCEEEEEEcCc-----EEEEeCCCEEEECCCCEEEEEECCCCcEEEEEe
Confidence 34677899999998765 555 47889999999999998764 789999999999999999999999999998754
No 28
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.51 E-value=6.1e-07 Score=67.55 Aligned_cols=65 Identities=23% Similarity=0.342 Sum_probs=48.1
Q ss_pred CCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEec
Q 027725 101 AGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFN 171 (219)
Q Consensus 101 pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~ 171 (219)
++...++|+|+ .-|+.||++|++++.+.+. .+.+++||++++|+|..|.....++++...+.+.-
T Consensus 12 ~~~~~~~h~h~-~~~i~~v~~G~~~~~~~~~-----~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~~ 76 (136)
T PF02311_consen 12 PNFEFPPHWHD-FYEIIYVLSGEGTLHIDGQ-----EYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIYF 76 (136)
T ss_dssp TT-SEEEETT--SEEEEEEEEE-EEEEETTE-----EEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE
T ss_pred CCCccCCEECC-CEEEEEEeCCEEEEEECCE-----EEEEECCEEEEecCCccEEEecCCCCCEEEEEEEE
Confidence 55567899998 8999999999999987554 78999999999999999999888776777666543
No 29
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=98.43 E-value=2.3e-06 Score=68.35 Aligned_cols=68 Identities=21% Similarity=0.271 Sum_probs=50.9
Q ss_pred cCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEecC
Q 027725 104 LNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNS 172 (219)
Q Consensus 104 ~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s 172 (219)
....|.|. .+|+-|+++|++.+.+-..+++.....+++||.+++|+|+.||+.-......+++=.|..
T Consensus 84 f~~EH~H~-deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~~ 151 (157)
T PF03079_consen 84 FFEEHTHE-DEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFKD 151 (157)
T ss_dssp HCS-EEES-S-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEESS
T ss_pred hheeEecC-hheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeecC
Confidence 35689998 799999999999999988777766688999999999999999998655556666666653
No 30
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=98.42 E-value=4.3e-07 Score=65.84 Aligned_cols=66 Identities=30% Similarity=0.466 Sum_probs=51.9
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEE
Q 027725 91 GVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVIS 168 (219)
Q Consensus 91 gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~ 168 (219)
|..+..++++||+..+.|.|+ +.|.+|||+|++.. .+ ..+.+||.+..|+|..|.... ++.+.++.
T Consensus 23 g~~~~L~r~~pG~~~p~H~H~-g~ee~~VLeG~~~d----~~-----~~~~~G~~~~~p~g~~h~~~s--~~gc~~~v 88 (91)
T PF12973_consen 23 GERVSLLRLEPGASLPRHRHP-GGEEILVLEGELSD----GD-----GRYGAGDWLRLPPGSSHTPRS--DEGCLILV 88 (91)
T ss_dssp TEEEEEEEE-TTEEEEEEEES-S-EEEEEEECEEEE----TT-----CEEETTEEEEE-TTEEEEEEE--SSCEEEEE
T ss_pred cCEEEEEEECCCCCcCccCCC-CcEEEEEEEEEEEE----CC-----ccCCCCeEEEeCCCCccccCc--CCCEEEEE
Confidence 557888999999999999998 78888999999864 22 256999999999999999984 55666654
No 31
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=98.41 E-value=1.1e-06 Score=73.66 Aligned_cols=72 Identities=18% Similarity=0.279 Sum_probs=62.7
Q ss_pred eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEec
Q 027725 92 VSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFN 171 (219)
Q Consensus 92 is~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~ 171 (219)
..+..++++||+..+.|.|. +.|+.+|++|+.. ++ ...+.+||++..|.|..|...+.+++++..+++.+
T Consensus 127 ~~v~Ll~i~pG~~~p~H~H~-G~E~tlVLeG~f~----de-----~g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v~d 196 (215)
T TIGR02451 127 ARVRLLYIEAGQSIPQHTHK-GFELTLVLHGAFS----DE-----TGVYGVGDFEEADGSVQHQPRTVSGGDCLCLAVLD 196 (215)
T ss_pred cEEEEEEECCCCccCCCcCC-CcEEEEEEEEEEE----cC-----CCccCCCeEEECCCCCCcCcccCCCCCeEEEEEec
Confidence 46778899999999999996 8999999999953 43 34689999999999999999999889999999987
Q ss_pred CC
Q 027725 172 SQ 173 (219)
Q Consensus 172 s~ 173 (219)
..
T Consensus 197 ap 198 (215)
T TIGR02451 197 AP 198 (215)
T ss_pred CC
Confidence 54
No 32
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=98.35 E-value=4.5e-06 Score=70.10 Aligned_cols=69 Identities=19% Similarity=0.178 Sum_probs=50.8
Q ss_pred eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEe
Q 027725 92 VSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAF 170 (219)
Q Consensus 92 is~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~ 170 (219)
++.....+.. ..-+||.+.+|+.||++|++++.+.+ + .+.+++||++++|+|..|.+.+.+ .++++.+.
T Consensus 157 m~aGf~~~~~---~sf~wtl~~dEi~YVLEGe~~l~IdG---~--t~~l~pGDvlfIPkGs~~hf~tp~--~aRflyV~ 225 (233)
T PRK15457 157 MAAGFMQWEN---AFFPWTLNYDEIDMVLEGELHVRHEG---E--TMIAKAGDVMFIPKGSSIEFGTPS--SVRFLYVA 225 (233)
T ss_pred eeeEEEEEec---CccceeccceEEEEEEEeEEEEEECC---E--EEEeCCCcEEEECCCCeEEecCCC--CeeEEEEE
Confidence 4444445543 23346767899999999999999854 4 889999999999999996665543 56665554
No 33
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.33 E-value=4.9e-06 Score=66.51 Aligned_cols=71 Identities=18% Similarity=0.276 Sum_probs=60.2
Q ss_pred CCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEecCCCCccc
Q 027725 106 PPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQ 178 (219)
Q Consensus 106 ~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~ 178 (219)
.-|.|. .+|+-|++.|++.+.+..++|+.+...+.+||.+.+|+|.-||+.-..+...+++=.|+ ..+|.+
T Consensus 89 ~EH~H~-d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~-~~~gWV 159 (181)
T COG1791 89 QEHLHT-DDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFT-EPEGWV 159 (181)
T ss_pred HHhccC-CceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEee-CCCCce
Confidence 579997 89999999999999999999999999999999999999999999765555566666665 355654
No 34
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=98.26 E-value=3.9e-06 Score=73.65 Aligned_cols=61 Identities=15% Similarity=0.174 Sum_probs=51.3
Q ss_pred EEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCC
Q 027725 95 SRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGD 161 (219)
Q Consensus 95 ~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~ 161 (219)
....-+|..+.++|||. .-|+.|+++|++.+.+.+ + ...+++||.+++++|.+|.....++
T Consensus 29 ~~~~~~~~~m~~~HwH~-e~Ei~yv~~G~~~~~i~g---~--~~~l~~Gd~ili~s~~~H~~~~~~~ 89 (302)
T PRK10371 29 EIEFRPPHIMPTSHWHG-QVEVNVPFDGDVEYLINN---E--KVQINQGHITLFWACTPHQLTDPGN 89 (302)
T ss_pred EEEeeCCCCCCCCCccc-cEEEEEecCCcEEEEECC---E--EEEEcCCcEEEEecCCcccccccCC
Confidence 33456778899999997 799999999999988755 3 7899999999999999998765443
No 35
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=98.22 E-value=4.5e-06 Score=64.51 Aligned_cols=64 Identities=22% Similarity=0.353 Sum_probs=54.0
Q ss_pred CCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEec
Q 027725 105 NPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFN 171 (219)
Q Consensus 105 ~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~ 171 (219)
.--|+|..+.|++.|++|+..+.+++++|+ ...+.+||++++|+|+-|.- +...-+..++..|.
T Consensus 56 ~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~--el~v~~GDvlliPAGvGH~r-l~sS~DF~VvGaYp 119 (163)
T COG4297 56 NYHHYHSGAHEVLGVLRGQAGLQIGGADGQ--ELEVGEGDVLLIPAGVGHCR-LHSSADFQVVGAYP 119 (163)
T ss_pred ccccccCCcceEEEEecceeEEEecCCCCc--eeeecCCCEEEEecCccccc-ccCCCCeEEEcccC
Confidence 346899999999999999999999999888 67999999999999999984 44556666666554
No 36
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=98.19 E-value=3.6e-06 Score=72.00 Aligned_cols=105 Identities=28% Similarity=0.316 Sum_probs=56.8
Q ss_pred cCcccccccccCCCCcccCCCCcEEEEecccCCCCCCccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEcc
Q 027725 52 ITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIST 131 (219)
Q Consensus 52 ~~~~df~~~~~~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~ 131 (219)
+..+|..|..+.-.. ...+.. .+.+-..|.- .|.+..|+++++|...+||+|. +++-+||++|++..+ ++
T Consensus 3 v~~~d~~w~~~~p~~---~~~~~~--~~~L~gd~~~--~g~~~~~vkf~~g~~~pph~H~-~~~~~~Vi~G~~~~~--~~ 72 (251)
T PF14499_consen 3 VHADDVKWGPLNPAR---GDKGPG--AAVLWGDPTK--DGPSGMRVKFPAGFSSPPHIHN-ADYRGTVISGELHNG--DP 72 (251)
T ss_dssp GGS--EEEE--TTS----TTS--E--EEEEEEE--T--TS-EEEEEEE-TT-EE--BEES-S-EEEEEEESEEEET--TE
T ss_pred cchhhccccccCCCC---CCCCcc--eeeeecCccc--CCcceEEEEcCCCccCCCccee-eeEEEEEEEeEEEcC--CC
Confidence 567788887542111 122222 2333334432 3678999999999999999997 899999999987653 32
Q ss_pred CCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEE
Q 027725 132 ADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVIS 168 (219)
Q Consensus 132 ~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~ 168 (219)
+...+-|.+|..+..|+|..|.....+++.+.++.
T Consensus 73 --~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~e 107 (251)
T PF14499_consen 73 --KAAAMWLPAGSYWFQPAGEPHITAAEGETNLLFIE 107 (251)
T ss_dssp --E-----E-TTEEEEE-TT-EEEETTS-EE-EEEEE
T ss_pred --cccceecCCCceEeccCCCceeeeccCccEEEEEE
Confidence 33456799999999999999998666655555543
No 37
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=98.14 E-value=3.4e-05 Score=58.88 Aligned_cols=82 Identities=23% Similarity=0.406 Sum_probs=72.3
Q ss_pred ccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEE
Q 027725 89 TLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVIS 168 (219)
Q Consensus 89 ~~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~ 168 (219)
+.|+|+....+.+|.....|+-. .-|-+|+++|++++.-.. +|+ .+.+++|.+..+.+.-.|+.+.. ++++++|
T Consensus 32 gmGFS~h~T~i~aGtet~~~Ykn-HlEAvyci~G~Gev~~~~-~G~--~~~i~pGt~YaLd~hD~H~lra~--~dm~~vC 105 (126)
T PF06339_consen 32 GMGFSFHETTIYAGTETHIHYKN-HLEAVYCIEGEGEVEDLD-TGE--VHPIKPGTMYALDKHDRHYLRAK--TDMRLVC 105 (126)
T ss_pred CCCEEEEEEEEeCCCeeEEEecC-ceEEEEEEeceEEEEEcc-CCc--EEEcCCCeEEecCCCccEEEEec--CCEEEEE
Confidence 46899999999999999999885 799999999999998765 566 78999999999999999999864 3899999
Q ss_pred EecCCCCc
Q 027725 169 AFNSQLPG 176 (219)
Q Consensus 169 ~~~s~~pg 176 (219)
+||..--|
T Consensus 106 VFnPpltG 113 (126)
T PF06339_consen 106 VFNPPLTG 113 (126)
T ss_pred EcCCCCcC
Confidence 99986554
No 38
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=98.11 E-value=7.6e-06 Score=72.83 Aligned_cols=76 Identities=20% Similarity=0.350 Sum_probs=63.3
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEe
Q 027725 91 GVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAF 170 (219)
Q Consensus 91 gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~ 170 (219)
.+.+..-.+.||...++|-|. +.-+.+|++|++....++ |+ ...+++||+++.|.+..|...|.|++++.++..+
T Consensus 80 tl~a~~q~l~pGe~~~~HRht-~sAl~~vveG~G~~t~V~--g~--~~~~~~gD~~~tP~w~wH~H~n~~d~~~~wld~l 154 (335)
T TIGR02272 80 SLYAGLQLILPGEVAPSHRHT-QSALRFIVEGKGAFTAVD--GE--RTTMHPGDFIITPSWTWHDHGNPGDEPMIWLDGL 154 (335)
T ss_pred hHHhhhEEeCCCCCCCccccc-cceEEEEEEcCceEEEEC--CE--EEeeeCCCEEEeCCCeeEecccCCCCcEEEEecC
Confidence 345556688999999999997 899999999998644443 34 7899999999999999999999999998886654
Q ss_pred c
Q 027725 171 N 171 (219)
Q Consensus 171 ~ 171 (219)
+
T Consensus 155 D 155 (335)
T TIGR02272 155 D 155 (335)
T ss_pred C
Confidence 3
No 39
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=98.09 E-value=3.3e-05 Score=64.25 Aligned_cols=77 Identities=14% Similarity=0.195 Sum_probs=65.5
Q ss_pred EEEEEEEcCCC-cCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEec
Q 027725 93 SLSRIDYEAGG-LNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFN 171 (219)
Q Consensus 93 s~~~~~l~pg~-~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~ 171 (219)
+-..+++.|+| ...+-.-++++-++||++|++++.+.++ ++.|++|+..++|+|..|.++|...+++++..+-.
T Consensus 62 ~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~G~-----th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~rk 136 (264)
T COG3257 62 VQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAEGK-----THALREGGYAYLPPGSGWTLRNAQKEDSRFHWIRK 136 (264)
T ss_pred hhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEcCe-----EEEeccCCeEEeCCCCcceEeeccCCceEEEEEee
Confidence 44567887776 6677777888999999999999988664 89999999999999999999999999999888765
Q ss_pred CCC
Q 027725 172 SQL 174 (219)
Q Consensus 172 s~~ 174 (219)
.-.
T Consensus 137 ~Y~ 139 (264)
T COG3257 137 RYQ 139 (264)
T ss_pred cce
Confidence 433
No 40
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=98.03 E-value=3.9e-05 Score=65.98 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=44.5
Q ss_pred CCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeC
Q 027725 102 GGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNN 159 (219)
Q Consensus 102 g~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~ 159 (219)
+...++|||. ..|++||++|++++.+.+ + ...+.+||++++|+|..|.....
T Consensus 33 ~~~~~~H~H~-~~ei~~v~~G~~~~~i~~---~--~~~l~~g~l~~i~p~~~H~~~~~ 84 (278)
T PRK10296 33 ESVSGLHQHD-YYEFTLVLTGRYYQEING---K--RVLLERGDFVFIPLGSHHQSFYE 84 (278)
T ss_pred hcCCCCcccc-cEEEEEEEeceEEEEECC---E--EEEECCCcEEEeCCCCccceeee
Confidence 4456899997 899999999999998855 3 78999999999999999976543
No 41
>PRK13500 transcriptional activator RhaR; Provisional
Probab=97.94 E-value=4.4e-05 Score=67.19 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=46.9
Q ss_pred CCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCC
Q 027725 101 AGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGD 161 (219)
Q Consensus 101 pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~ 161 (219)
|....++|||+ ..|++||++|++.+.+.+. .+.+++||++++|+|..|.+....+
T Consensus 57 ~~~~~~~H~H~-~~el~~v~~G~g~~~v~~~-----~~~l~~Gdl~~I~~~~~H~~~~~~~ 111 (312)
T PRK13500 57 PQDVFAEHTHD-FCELVIVWRGNGLHVLNDR-----PYRITRGDLFYIHADDKHSYASVND 111 (312)
T ss_pred CCCCCCccccc-eEEEEEEEcCeEEEEECCE-----EEeecCCeEEEECCCCeecccccCC
Confidence 34456899997 8999999999999988654 7899999999999999999876443
No 42
>PRK13501 transcriptional activator RhaR; Provisional
Probab=97.93 E-value=3.7e-05 Score=66.69 Aligned_cols=55 Identities=16% Similarity=0.116 Sum_probs=46.6
Q ss_pred cCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCC
Q 027725 100 EAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNG 160 (219)
Q Consensus 100 ~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g 160 (219)
.+....++|||+ ..|++||++|++++.+.+. .+.+++||++++|+|.+|.+...+
T Consensus 26 ~~~~~~~~H~H~-~~ei~~i~~G~~~~~i~~~-----~~~l~~g~~~~I~p~~~H~~~~~~ 80 (290)
T PRK13501 26 YPQETFVEHTHQ-FCEIVIVWRGNGLHVLNDH-----PYRITCGDVFYIQAADHHSYESVH 80 (290)
T ss_pred CCCCCCcccccc-ceeEEEEecCceEEEECCe-----eeeecCCeEEEEcCCCcccccccC
Confidence 344456799997 8999999999999988553 789999999999999999987543
No 43
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=97.91 E-value=3.4e-05 Score=66.44 Aligned_cols=58 Identities=17% Similarity=0.231 Sum_probs=47.6
Q ss_pred CCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCE
Q 027725 102 GGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPA 164 (219)
Q Consensus 102 g~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a 164 (219)
+...++|||.+.-|++|+++|++.+.+.+ + ...+++||++++|+|..|.+....+...
T Consensus 33 ~~~~~~H~H~~~~~l~~~~~G~~~~~~~~---~--~~~l~~g~~~ii~~~~~H~~~~~~~~~~ 90 (287)
T TIGR02297 33 GRNMPVHFHDRYYQLHYLTEGSIALQLDE---H--EYSEYAPCFFLTPPSVPHGFVTDLDADG 90 (287)
T ss_pred CCCCCCcccccceeEEEEeeCceEEEECC---E--EEEecCCeEEEeCCCCccccccCCCcce
Confidence 45689999964689999999999988754 3 7899999999999999999876544333
No 44
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=97.91 E-value=6e-05 Score=58.45 Aligned_cols=76 Identities=17% Similarity=0.210 Sum_probs=45.8
Q ss_pred EEEE-EEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCC-CEEEECCCCeEEEEeCCCCCEEEEEEec
Q 027725 94 LSRI-DYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKG-EIYVFPKALVHFQKNNGDKPASVISAFN 171 (219)
Q Consensus 94 ~~~~-~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~G-Dv~~~P~g~~H~~~N~g~~~a~~l~~~~ 171 (219)
+..+ ..++|.....|+|....|+++|++|+.++.+.+..++ ....|... ..+.+|+|.+|.+.|.++. +++++.-+
T Consensus 34 vy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~-~~~~L~~~~~~L~Ippg~w~~~~~~s~~-svlLv~as 111 (131)
T PF05523_consen 34 VYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREE-EEFILDEPNKGLYIPPGVWHGIKNFSED-SVLLVLAS 111 (131)
T ss_dssp EEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS-E-EEEEE--TTEEEEE-TT-EEEEE---TT--EEEEEES
T ss_pred EEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCCCc-EEEEECCCCeEEEECCchhhHhhccCCC-cEEEEEcC
Confidence 3334 3455556899999999999999999999998764333 46677655 4999999999999998777 77666433
No 45
>PRK13503 transcriptional activator RhaS; Provisional
Probab=97.84 E-value=5.2e-05 Score=64.95 Aligned_cols=53 Identities=19% Similarity=0.208 Sum_probs=46.1
Q ss_pred CCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeC
Q 027725 101 AGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNN 159 (219)
Q Consensus 101 pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~ 159 (219)
+....++|||. ..|++||++|++++.+.+. ...+++||++++|++..|.+...
T Consensus 24 ~~~~~~~H~H~-~~ei~~v~~G~~~~~i~~~-----~~~l~~g~~~~i~~~~~h~~~~~ 76 (278)
T PRK13503 24 PQAAFPEHHHD-FHEIVIVEHGTGIHVFNGQ-----PYTLSGGTVCFVRDHDRHLYEHT 76 (278)
T ss_pred ccccccccccC-ceeEEEEecCceeeEecCC-----cccccCCcEEEECCCccchhhhc
Confidence 44567899997 8999999999999988664 78999999999999999987654
No 46
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.83 E-value=4.4e-05 Score=66.32 Aligned_cols=91 Identities=20% Similarity=0.311 Sum_probs=74.0
Q ss_pred EEEecccCCCCCCccc-----eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECC
Q 027725 76 VTAANVEKIPGLNTLG-----VSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPK 150 (219)
Q Consensus 76 ~~~~~~~~~P~l~~~g-----is~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~ 150 (219)
++.+-.-+-|+|++.. +.+..--|.||-..+.|.|. .+-+-||++|++-+.+++ |+ ...+++||.++.|+
T Consensus 71 ~RRvi~L~NP~l~g~ssiT~TLyAglQlilPGEvApsHrHs-qsAlRFvveG~Ga~T~Vd--Ge--r~~M~~GDfilTP~ 145 (351)
T COG3435 71 VRRVIYLENPGLRGRSSITPTLYAGLQLILPGEVAPSHRHN-QSALRFVVEGKGAYTVVD--GE--RTPMEAGDFILTPA 145 (351)
T ss_pred eeEEEEecCCCCCCcccccHHHHhhhheecCcccCCccccc-ccceEEEEeccceeEeec--Cc--eeeccCCCEEEccC
Confidence 4555666778887663 12334467899999999997 799999999999888775 33 57899999999999
Q ss_pred CCeEEEEeCCCCCEEEEEEec
Q 027725 151 ALVHFQKNNGDKPASVISAFN 171 (219)
Q Consensus 151 g~~H~~~N~g~~~a~~l~~~~ 171 (219)
+..|..-|.|.+|++++-.++
T Consensus 146 w~wHdHgn~g~eP~iWlDgLD 166 (351)
T COG3435 146 WTWHDHGNEGTEPCIWLDGLD 166 (351)
T ss_pred ceeccCCCCCCCceEEEcccc
Confidence 999999999999999987654
No 47
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.82 E-value=4e-05 Score=60.97 Aligned_cols=55 Identities=25% Similarity=0.373 Sum_probs=49.2
Q ss_pred CCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCC
Q 027725 105 NPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNG 160 (219)
Q Consensus 105 ~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g 160 (219)
.+.|.|. -+|+-||++|++.+-+-+.+++....-+++||.+++|+|+.|++.-+.
T Consensus 86 fEEhlh~-deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~ 140 (179)
T KOG2107|consen 86 FEEHLHE-DEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTP 140 (179)
T ss_pred HHHhcCc-hhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCc
Confidence 4789998 699999999999999988888877888999999999999999996543
No 48
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=97.78 E-value=0.00024 Score=55.83 Aligned_cols=73 Identities=12% Similarity=0.258 Sum_probs=49.3
Q ss_pred EEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEecC
Q 027725 96 RIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNS 172 (219)
Q Consensus 96 ~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s 172 (219)
.+.-.|+...-.|..+ ++|++|-++|...+.+.+ +|+.....+++||++++|++++|.-+-.. ..+-+++-..
T Consensus 37 mvVGGPN~R~DyHine-~eE~FyQ~kG~m~Lkv~e-~g~~kdi~I~EGe~fLLP~~vpHsP~R~~--~tiGLViEr~ 109 (151)
T PF06052_consen 37 MVVGGPNQRTDYHINE-TEEFFYQLKGDMCLKVVE-DGKFKDIPIREGEMFLLPANVPHSPQRPA--DTIGLVIERK 109 (151)
T ss_dssp EEEESSB--SSEEE-S-S-EEEEEEES-EEEEEEE-TTEEEEEEE-TTEEEEE-TT--EEEEE-T--T-EEEEEEE-
T ss_pred EEEcCCCCCCccccCC-cceEEEEEeCcEEEEEEe-CCceEEEEeCCCcEEecCCCCCCCCcCCC--CcEEEEEEec
Confidence 3455777778888887 899999999999999887 67777899999999999999999987653 4444444433
No 49
>PRK13502 transcriptional activator RhaR; Provisional
Probab=97.78 E-value=0.00011 Score=63.28 Aligned_cols=55 Identities=15% Similarity=0.192 Sum_probs=46.6
Q ss_pred cCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCC
Q 027725 100 EAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNG 160 (219)
Q Consensus 100 ~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g 160 (219)
.|+...++|||. .-|++||.+|++++.+.+ + .+.+++||++++|+|.+|.+...+
T Consensus 26 ~~~~~~~~H~h~-~~~l~~v~~G~~~~~i~~---~--~~~l~~g~l~li~~~~~H~~~~~~ 80 (282)
T PRK13502 26 YPQDVFAEHTHE-FCELVMVWRGNGLHVLNE---R--PYRITRGDLFYIRAEDKHSYTSVN 80 (282)
T ss_pred CCCCCCCccccc-eEEEEEEecCcEEEEECC---E--EEeecCCcEEEECCCCcccccccC
Confidence 445557899997 899999999999998755 3 789999999999999999986544
No 50
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=97.68 E-value=0.00016 Score=50.54 Aligned_cols=58 Identities=22% Similarity=0.312 Sum_probs=42.3
Q ss_pred EEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEE
Q 027725 93 SLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQK 157 (219)
Q Consensus 93 s~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~ 157 (219)
+....+..||... .++. .+|++||++|++++... +|. .+.+++||++++|+|..-.+.
T Consensus 8 ~~g~w~~~pg~~~-~~~~--~~E~~~vleG~v~it~~--~G~--~~~~~aGD~~~~p~G~~~~w~ 65 (74)
T PF05899_consen 8 SAGVWECTPGKFP-WPYP--EDEFFYVLEGEVTITDE--DGE--TVTFKAGDAFFLPKGWTGTWE 65 (74)
T ss_dssp EEEEEEEECEEEE-EEES--SEEEEEEEEEEEEEEET--TTE--EEEEETTEEEEE-TTEEEEEE
T ss_pred EEEEEEECCceeE-eeCC--CCEEEEEEEeEEEEEEC--CCC--EEEEcCCcEEEECCCCEEEEE
Confidence 4455566776533 3333 49999999999998753 455 689999999999999976654
No 51
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.63 E-value=0.00027 Score=63.07 Aligned_cols=87 Identities=15% Similarity=0.087 Sum_probs=63.9
Q ss_pred CcEEEEecccCCC-CCCccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCC
Q 027725 73 GSLVTAANVEKIP-GLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKA 151 (219)
Q Consensus 73 g~~~~~~~~~~~P-~l~~~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g 151 (219)
|..+.-.+..+-+ ...+++..+ ..+++|....+|-|. .+.+++|++|+++..+++. ....++||+|++|.-
T Consensus 232 g~~l~y~NP~TG~~~~pti~~~~--q~L~~G~~t~~~r~T-~s~Vf~VieG~G~s~ig~~-----~~~W~~gD~f~vPsW 303 (335)
T TIGR02272 232 GLKLRYVNPATGGYPMPTIGAFI--QLLPKGFRTATYRST-DATVFCVVEGRGQVRIGDA-----VFRFSPKDVFVVPSW 303 (335)
T ss_pred eEEEEEeCCCCCCCcchhHHHHH--hccCCCCCCCCcccc-ccEEEEEEeCeEEEEECCE-----EEEecCCCEEEECCC
Confidence 3344445533333 334555443 567899999999996 8999999999999998654 789999999999999
Q ss_pred CeEEEEeCCCCCEEEEEE
Q 027725 152 LVHFQKNNGDKPASVISA 169 (219)
Q Consensus 152 ~~H~~~N~g~~~a~~l~~ 169 (219)
..|...|. +++.++.+
T Consensus 304 ~~~~h~a~--~da~Lf~~ 319 (335)
T TIGR02272 304 HPVRFEAS--DDAVLFSF 319 (335)
T ss_pred CcEecccC--CCeEEEEe
Confidence 88887774 45655544
No 52
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=97.52 E-value=0.0016 Score=52.91 Aligned_cols=84 Identities=24% Similarity=0.336 Sum_probs=59.2
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCe--------EEEEEEcCCCEEEECCCCeEEEEeCC-C
Q 027725 91 GVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADK--------LISKTVKKGEIYVFPKALVHFQKNNG-D 161 (219)
Q Consensus 91 gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~--------~~~~~L~~GDv~~~P~g~~H~~~N~g-~ 161 (219)
.+++..+...||...+.|-|..+.=++.|++|+++-......+. .....+..|....++.+.+|...|.+ +
T Consensus 74 ~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~ 153 (175)
T PF05995_consen 74 RFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGD 153 (175)
T ss_dssp T-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SS
T ss_pred CeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCC
Confidence 46788899999999999999866678889999988776543221 12345678888889999999999987 8
Q ss_pred CCEEEEEEecCCC
Q 027725 162 KPASVISAFNSQL 174 (219)
Q Consensus 162 ~~a~~l~~~~s~~ 174 (219)
++++-+-+|....
T Consensus 154 ~~avSLHvYspPl 166 (175)
T PF05995_consen 154 EPAVSLHVYSPPL 166 (175)
T ss_dssp S-EEEEEEEES--
T ss_pred CCEEEEEEcCCCh
Confidence 9999999998754
No 53
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=97.33 E-value=0.00049 Score=54.62 Aligned_cols=68 Identities=21% Similarity=0.257 Sum_probs=45.7
Q ss_pred eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEE
Q 027725 92 VSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISA 169 (219)
Q Consensus 92 is~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~ 169 (219)
++...++++.. +.-|.-.-+|+.||++|++.+.. +|+ ....++||+++||+|.--.+..+ ..++++.+
T Consensus 77 l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~~---~G~--~~~A~~GDvi~iPkGs~I~fst~--~~a~~~Yv 144 (152)
T PF06249_consen 77 LSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEISI---DGQ--TVTAKPGDVIFIPKGSTITFSTP--DYARFFYV 144 (152)
T ss_dssp SEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEEE---TTE--EEEEETT-EEEE-TT-EEEEEEE--EEEEEEEE
T ss_pred eeeEEEEEeCC---CccEEeecceEEEEEEeEEEEEE---CCE--EEEEcCCcEEEECCCCEEEEecC--CCEEEEEE
Confidence 34444555543 34577768999999999998874 355 78999999999999998777543 33555444
No 54
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.24 E-value=0.0036 Score=49.43 Aligned_cols=67 Identities=19% Similarity=0.256 Sum_probs=48.4
Q ss_pred EEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEE
Q 027725 93 SLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISA 169 (219)
Q Consensus 93 s~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~ 169 (219)
++...++++ ...+ |.-+-+|+-||++|++.+...+. +...++||++++|+|.---+.-+|. ++++.+
T Consensus 101 ~aG~m~~~~-~tf~--wtl~yDe~d~VlEGrL~V~~~g~-----tv~a~aGDvifiPKgssIefst~ge--a~flyv 167 (176)
T COG4766 101 GAGLMEMKN-TTFP--WTLNYDEIDYVLEGRLHVRIDGR-----TVIAGAGDVIFIPKGSSIEFSTTGE--AKFLYV 167 (176)
T ss_pred ccceeeecc-ccCc--ceecccceeEEEeeeEEEEEcCC-----eEecCCCcEEEecCCCeEEEeccce--EEEEEE
Confidence 344455555 3333 33347999999999999987553 7789999999999999888866555 555543
No 55
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=97.13 E-value=0.0031 Score=51.18 Aligned_cols=75 Identities=13% Similarity=0.180 Sum_probs=58.6
Q ss_pred CCCcCCCCCCCCC-cEEEEEEeeEEEEEEEccC------CeEEEEEEcCC--CEEEECCCCeEEEEeCCCCCEEEEEE--
Q 027725 101 AGGLNPPHTHPRA-TEMIFVLEGELDVGFISTA------DKLISKTVKKG--EIYVFPKALVHFQKNNGDKPASVISA-- 169 (219)
Q Consensus 101 pg~~~~pH~H~~a-~E~~~Vl~G~~~v~~~~~~------~~~~~~~L~~G--Dv~~~P~g~~H~~~N~g~~~a~~l~~-- 169 (219)
+|-+...|+|..- .+++.|++|++....++-. |+.....+.+- ..+++|+|..|-++|.+++..+++..
T Consensus 54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~y~~~~ 133 (173)
T COG1898 54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVVYKVTE 133 (173)
T ss_pred CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCceEEEEEecc
Confidence 8889999999876 8999999999998887631 35556677655 79999999999999999887444443
Q ss_pred -ecCCCC
Q 027725 170 -FNSQLP 175 (219)
Q Consensus 170 -~~s~~p 175 (219)
|+.+.+
T Consensus 134 ~Y~p~~~ 140 (173)
T COG1898 134 EYDPEHE 140 (173)
T ss_pred eeCcccc
Confidence 444444
No 56
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.85 E-value=0.0035 Score=54.71 Aligned_cols=65 Identities=22% Similarity=0.194 Sum_probs=56.7
Q ss_pred EEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEE
Q 027725 98 DYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISA 169 (219)
Q Consensus 98 ~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~ 169 (219)
-++||-...+|-|. .+-+.-|.+|++++.+++. .+...+||+|++|.=..|.+.|. .+++.++++
T Consensus 267 lL~~Gf~~~~~r~t-~s~iy~V~eGsg~~~Ig~~-----rf~~~~~D~fvVPsW~~~~~~~g-s~da~LFsf 331 (351)
T COG3435 267 LLPPGFHGKAHRHT-DSTIYHVVEGSGYTIIGGE-----RFDWSAGDIFVVPSWAWHEHVNG-SEDAVLFSF 331 (351)
T ss_pred hcCCcccCCceecc-CCEEEEEEecceeEEECCE-----EeeccCCCEEEccCcceeecccC-CcceEEEec
Confidence 56888889999997 6889999999999988664 78999999999999999999884 778887766
No 57
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=96.79 E-value=0.012 Score=47.99 Aligned_cols=77 Identities=17% Similarity=0.160 Sum_probs=55.2
Q ss_pred cCCCcCCCCCCCCC---cEEEEEEeeEEEEEEEcc------CCeEEEEEEcCCC--EEEECCCCeEEEEeCCCCCEEEEE
Q 027725 100 EAGGLNPPHTHPRA---TEMIFVLEGELDVGFIST------ADKLISKTVKKGE--IYVFPKALVHFQKNNGDKPASVIS 168 (219)
Q Consensus 100 ~pg~~~~pH~H~~a---~E~~~Vl~G~~~v~~~~~------~~~~~~~~L~~GD--v~~~P~g~~H~~~N~g~~~a~~l~ 168 (219)
.+|.+..+|+|... ..++.|++|++...+++- -|+.....|.+++ .++||+|..|-+.+.+++..+.+-
T Consensus 51 ~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v~Y~ 130 (176)
T PF00908_consen 51 KKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDDAEVLYK 130 (176)
T ss_dssp ETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSEEEEEEE
T ss_pred cccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCceEEEEe
Confidence 44888999998754 689999999999888863 2677788898876 799999999999998776444443
Q ss_pred EecCCCCc
Q 027725 169 AFNSQLPG 176 (219)
Q Consensus 169 ~~~s~~pg 176 (219)
+-+..+|+
T Consensus 131 ~t~~y~p~ 138 (176)
T PF00908_consen 131 VTNYYDPE 138 (176)
T ss_dssp ESS---GG
T ss_pred cCCccCcc
Confidence 33334454
No 58
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=96.79 E-value=0.022 Score=46.37 Aligned_cols=78 Identities=15% Similarity=0.104 Sum_probs=58.3
Q ss_pred cCCCcCCCCCCC--CCcEEEEEEeeEEEEEEEccC------CeEEEEEEcC--CCEEEECCCCeEEEEeCCCCCEEEEEE
Q 027725 100 EAGGLNPPHTHP--RATEMIFVLEGELDVGFISTA------DKLISKTVKK--GEIYVFPKALVHFQKNNGDKPASVISA 169 (219)
Q Consensus 100 ~pg~~~~pH~H~--~a~E~~~Vl~G~~~v~~~~~~------~~~~~~~L~~--GDv~~~P~g~~H~~~N~g~~~a~~l~~ 169 (219)
.+|.+..+|.|. ...+++.|++|++...+++-. |+.....|.+ +..++||+|..|-+...+++....+.+
T Consensus 52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~a~v~Y~~ 131 (176)
T TIGR01221 52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDEAEFLYKC 131 (176)
T ss_pred cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCCeEEEEeC
Confidence 568889999983 368999999999999888641 5666778877 569999999999999988663343333
Q ss_pred ecCCCCcc
Q 027725 170 FNSQLPGT 177 (219)
Q Consensus 170 ~~s~~pg~ 177 (219)
-+..+|+.
T Consensus 132 ~~~y~p~~ 139 (176)
T TIGR01221 132 TDYYAPEY 139 (176)
T ss_pred CCCcCccc
Confidence 23334553
No 59
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=96.74 E-value=0.011 Score=44.95 Aligned_cols=57 Identities=19% Similarity=0.304 Sum_probs=42.0
Q ss_pred EEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEe
Q 027725 95 SRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKN 158 (219)
Q Consensus 95 ~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N 158 (219)
..-.-.||. .+++....|+.++|+|++++.- .+|+ ..++++||+++||+|..=.+.-
T Consensus 48 GiWe~TpG~---~r~~y~~~E~chil~G~v~~T~--d~Ge--~v~~~aGD~~~~~~G~~g~W~V 104 (116)
T COG3450 48 GIWECTPGK---FRVTYDEDEFCHILEGRVEVTP--DGGE--PVEVRAGDSFVFPAGFKGTWEV 104 (116)
T ss_pred eEEEecCcc---ceEEcccceEEEEEeeEEEEEC--CCCe--EEEEcCCCEEEECCCCeEEEEE
Confidence 333444544 3455557999999999998853 2456 7799999999999999876653
No 60
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=96.63 E-value=0.011 Score=54.26 Aligned_cols=106 Identities=17% Similarity=0.196 Sum_probs=51.6
Q ss_pred CcccccccccCCC--CcccCCCCcEEEEecccCCCCCCccceEEEEEEEcCCCc-CCCCCCCCCcEEEEEEeeEEEEEEE
Q 027725 53 TADDFFFAGLAKP--GVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGL-NPPHTHPRATEMIFVLEGELDVGFI 129 (219)
Q Consensus 53 ~~~df~~~~~~~~--~~~~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pg~~-~~pH~H~~a~E~~~Vl~G~~~v~~~ 129 (219)
+++.+.|..+..| ..+.--.| +..+...+.|..+ .|+.+...... ..| ...-.+.+++|++++.+|++++.-.
T Consensus 87 ~p~~lrw~p~~~p~~~~~dfvdg--l~ti~g~gd~~~~-~g~ai~~y~~~-~sM~~~~f~NaDGD~Li~~q~G~l~l~Te 162 (424)
T PF04209_consen 87 TPNQLRWDPFPIPSDEPTDFVDG--LRTIAGAGDPLSN-NGVAIHVYAAN-ASMDDRAFRNADGDELIFPQQGSLRLETE 162 (424)
T ss_dssp --S-EEE-S----TT----TTTT--EEEEEEECECCCT-EEEEEEEEEE--S---SEEEEESSEEEEEEEEES-EEEEET
T ss_pred CccccccCCCCCCCcCCCCcccc--ccccccCcccccc-CCcEEEEEEcC-CCCCCcceEcCCCCEEEEEEECCEEEEec
Confidence 5667777766444 11222223 2333344445443 23333222221 223 2233456799999999999988643
Q ss_pred ccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEE
Q 027725 130 STADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISA 169 (219)
Q Consensus 130 ~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~ 169 (219)
-| ...+++||+++||+|+.+++.-. ++++.+.+
T Consensus 163 --~G---~L~v~pGd~~VIPRG~~~rv~l~--~p~rgyi~ 195 (424)
T PF04209_consen 163 --FG---RLDVRPGDYVVIPRGTRFRVELP--GPARGYII 195 (424)
T ss_dssp --TE---EEEE-TTEEEEE-TT--EEEE-S--SSEEEEEE
T ss_pred --Ce---eEEEcCCeEEEECCeeEEEEEeC--CCceEEEE
Confidence 34 46799999999999999998766 55555554
No 61
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=96.18 E-value=0.042 Score=50.39 Aligned_cols=62 Identities=15% Similarity=0.122 Sum_probs=45.5
Q ss_pred CCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEec
Q 027725 105 NPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFN 171 (219)
Q Consensus 105 ~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~ 171 (219)
...-...+++|++++.+|++.+... -| ...+++||+++||+|+.+++.-.+.....++..+.
T Consensus 140 ~~~f~NaDGD~Livpq~G~l~i~TE--fG---~L~v~pgei~VIPRG~~frv~l~gp~rgyi~E~~g 201 (429)
T TIGR01015 140 NRAFYNADGDFLIVPQQGALLITTE--FG---RLLVEPNEICVIPRGVRFRVTVLEPARGYICEVYG 201 (429)
T ss_pred cceeeccCCCEEEEEEeCcEEEEEe--cc---ceEecCCCEEEecCccEEEEeeCCCceEEEEeccC
Confidence 3344556799999999999998754 34 46899999999999999998765433344444444
No 62
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=96.16 E-value=0.045 Score=50.33 Aligned_cols=109 Identities=15% Similarity=0.160 Sum_probs=62.7
Q ss_pred cCcccccccccCCCCcccCCCCcEEEEecccCCCCCCccceEEEEEEEcCCCc-CCCCCCCCCcEEEEEEeeEEEEEEEc
Q 027725 52 ITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGL-NPPHTHPRATEMIFVLEGELDVGFIS 130 (219)
Q Consensus 52 ~~~~df~~~~~~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pg~~-~~pH~H~~a~E~~~Vl~G~~~v~~~~ 130 (219)
.+++.+.|+-+..|........+ +........|.+. .|+.+....... .| ...-.+.+++|++++.+|++.+.-.
T Consensus 95 ~~p~q~rW~P~~~p~~~~Dfv~g-l~tl~gngD~~~~-~G~ai~~y~~n~-sM~~~~f~NaDGD~Livpq~G~l~i~TE- 170 (438)
T PRK05341 95 TPPNQLRWDPLPLPAEPTDFVDG-LVTMAGNGDAEAQ-AGMAIHLYAANR-SMQDRYFYNADGELLIVPQQGRLRLATE- 170 (438)
T ss_pred CCccccccCCCCCCCCCCCchhh-hhhhhcCCCcccc-cccEEEEEeCCC-CcccceeecCCCCEEEEEEeCCEEEEEe-
Confidence 56777778766543211111111 1122223333332 233333222221 34 3344556799999999999988654
Q ss_pred cCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEE
Q 027725 131 TADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISA 169 (219)
Q Consensus 131 ~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~ 169 (219)
-| ...+++||+++||+|+.+++.- .+.+++.+.+
T Consensus 171 -fG---~L~v~pgei~VIPRG~~frv~l-~~gp~rgyi~ 204 (438)
T PRK05341 171 -LG---VLDVEPGEIAVIPRGVKFRVEL-PDGPARGYVC 204 (438)
T ss_pred -cc---ceEecCCCEEEEcCccEEEEec-CCCCeeEEEE
Confidence 34 4689999999999999999863 3345555544
No 63
>PLN02658 homogentisate 1,2-dioxygenase
Probab=96.00 E-value=0.061 Score=49.42 Aligned_cols=109 Identities=16% Similarity=0.136 Sum_probs=63.0
Q ss_pred cCcccccccccCCCCcccCCCCcEEEEecccCCCCCCccceEEEEEEEcCCCc-CCCCCCCCCcEEEEEEeeEEEEEEEc
Q 027725 52 ITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGL-NPPHTHPRATEMIFVLEGELDVGFIS 130 (219)
Q Consensus 52 ~~~~df~~~~~~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pg~~-~~pH~H~~a~E~~~Vl~G~~~v~~~~ 130 (219)
.+++.+.|+-+..|........+ +........|.+. .|+.+....... .| ...-.+.+++|++++.+|++.+.-.
T Consensus 88 ~~p~qlrW~P~~~p~~~~Dfv~g-l~tl~gngD~~~~-~G~ai~iy~~n~-sM~~~~f~NaDGD~Livpq~G~l~i~TE- 163 (435)
T PLN02658 88 TTPTQLRWRPFPVPDSPVDFVDG-LFTVCGAGSPFLR-HGYAIHMYVANK-SMDDCAFCNADGDFLIVPQQGRLWIKTE- 163 (435)
T ss_pred CCccccccCCCCCCcCCCCchhh-hhhhhcCCCcccc-cCcEEEEEeCCC-CCccceeecCCCCEEEEEEeCCEEEEEe-
Confidence 66778888776554211111222 1122223333322 233333222111 33 3334566799999999999988653
Q ss_pred cCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEE
Q 027725 131 TADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISA 169 (219)
Q Consensus 131 ~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~ 169 (219)
-| ...+++||+++||+|+.+++.-. +++++.+.+
T Consensus 164 -fG---~L~v~pgei~VIPRG~~frv~l~-~gp~rgyv~ 197 (435)
T PLN02658 164 -LG---KLQVSPGEIVVIPRGFRFAVDLP-DGPSRGYVL 197 (435)
T ss_pred -cc---ceEecCCCEEEecCccEEEEecC-CCCeeEEEE
Confidence 34 46789999999999999988632 345555443
No 64
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=95.80 E-value=0.053 Score=45.17 Aligned_cols=69 Identities=16% Similarity=0.264 Sum_probs=48.7
Q ss_pred EEEEEEcC-CCcCCCCCCCCCcEEEEEEeeEEEEEEEccC--------C---------------------------eEEE
Q 027725 94 LSRIDYEA-GGLNPPHTHPRATEMIFVLEGELDVGFISTA--------D---------------------------KLIS 137 (219)
Q Consensus 94 ~~~~~l~p-g~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~--------~---------------------------~~~~ 137 (219)
...+-+.+ |...+.|+.+ ..-++.+++|+=++.+..+. . +...
T Consensus 132 ~~~l~ig~~gs~t~lH~D~-~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~ 210 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDP-SHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYE 210 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-S-SEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEE
T ss_pred ccEEEEeCCCceeeeeECc-hhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeE
Confidence 34455655 5578899987 78899999999998887542 0 2357
Q ss_pred EEEcCCCEEEECCCCeEEEEeCCCCC
Q 027725 138 KTVKKGEIYVFPKALVHFQKNNGDKP 163 (219)
Q Consensus 138 ~~L~~GDv~~~P~g~~H~~~N~g~~~ 163 (219)
.+|++||+++||+|..|+.+|..+++
T Consensus 211 ~~l~pGD~LfiP~gWwH~V~~~~~~~ 236 (251)
T PF13621_consen 211 VVLEPGDVLFIPPGWWHQVENLSDDD 236 (251)
T ss_dssp EEEETT-EEEE-TT-EEEEEESTTSS
T ss_pred EEECCCeEEEECCCCeEEEEEcCCCC
Confidence 89999999999999999999984443
No 65
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=95.70 E-value=0.057 Score=45.32 Aligned_cols=73 Identities=19% Similarity=0.288 Sum_probs=44.6
Q ss_pred EEEcCCCcCCCCCCCCCcEEEEEEe-eEEEEEEEccC----------------CeEE------EEEEcCCCEEEECCCCe
Q 027725 97 IDYEAGGLNPPHTHPRATEMIFVLE-GELDVGFISTA----------------DKLI------SKTVKKGEIYVFPKALV 153 (219)
Q Consensus 97 ~~l~pg~~~~pH~H~~a~E~~~Vl~-G~~~v~~~~~~----------------~~~~------~~~L~~GDv~~~P~g~~ 153 (219)
+.+.+|...|.|.|..-.|=++..- |.+.+.+...+ |..+ ..+|++|+.+.+++|+.
T Consensus 92 m~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~Pg~y 171 (225)
T PF07385_consen 92 MIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESITLPPGIY 171 (225)
T ss_dssp EEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-TTEE
T ss_pred eeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEeeCCCCe
Confidence 5668899999999988888777765 57766665431 2111 46899999999999999
Q ss_pred EEEEeCCCCCEEEEEEec
Q 027725 154 HFQKNNGDKPASVISAFN 171 (219)
Q Consensus 154 H~~~N~g~~~a~~l~~~~ 171 (219)
|+++..+.. +++.=.+
T Consensus 172 H~Fw~e~g~--vLigEVS 187 (225)
T PF07385_consen 172 HWFWGEGGD--VLIGEVS 187 (225)
T ss_dssp EEEEE-TTS--EEEEEEE
T ss_pred eeEEecCCC--EEEEeee
Confidence 999975443 5544333
No 66
>PF12852 Cupin_6: Cupin
Probab=95.69 E-value=0.077 Score=42.91 Aligned_cols=44 Identities=16% Similarity=0.329 Sum_probs=36.2
Q ss_pred CcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeC
Q 027725 113 ATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNN 159 (219)
Q Consensus 113 a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~ 159 (219)
..-+.+|++|+.++.+.+ .+. ...|++||++++|+|..|.+...
T Consensus 35 ~~~fh~V~~G~~~l~~~~-~~~--~~~L~~GDivllp~g~~H~l~~~ 78 (186)
T PF12852_consen 35 GASFHVVLRGSCWLRVPG-GGE--PIRLEAGDIVLLPRGTAHVLSSD 78 (186)
T ss_pred ceEEEEEECCeEEEEEcC-CCC--eEEecCCCEEEEcCCCCeEeCCC
Confidence 367889999999998754 123 68999999999999999999543
No 67
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=95.50 E-value=0.064 Score=40.14 Aligned_cols=64 Identities=25% Similarity=0.409 Sum_probs=47.0
Q ss_pred CCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECC--CCeEEEEeCCC-CCEEEEEE
Q 027725 102 GGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPK--ALVHFQKNNGD-KPASVISA 169 (219)
Q Consensus 102 g~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~--g~~H~~~N~g~-~~a~~l~~ 169 (219)
+.-.++|-|..-+-+.||++|+++.. +..|. ..+|++||+-++-+ |+.|.-.|.++ +++..+-+
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G~~~H~--Ds~G~--~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~lQl 105 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEGELRHR--DSLGN--RGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGLQL 105 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEESEEEEE--ETTSE--EEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEEEE
T ss_pred CCCCCCcCCCCceEEEEEecCEEEEE--CCCCC--eeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEEEE
Confidence 44568899986666789999998764 44555 57899999888876 67999999887 77776654
No 68
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=95.45 E-value=0.013 Score=50.23 Aligned_cols=76 Identities=20% Similarity=0.188 Sum_probs=45.9
Q ss_pred eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEec
Q 027725 92 VSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFN 171 (219)
Q Consensus 92 is~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~ 171 (219)
+.-..++++.|....+|+|. ..|-.||++|++..+.....+ ...|.+|..+.-|.+..|... .++++++++...+
T Consensus 171 ~~gll~kLPagf~g~i~~h~-~~eraVvI~G~~~~~~~~~~~---~~~L~~GSYf~s~~~~~H~~~-~~e~~~vlyIRtd 245 (251)
T PF14499_consen 171 YTGLLLKLPAGFTGRIHTHA-SNERAVVISGELDYQSYGASN---FGTLDPGSYFGSPGHITHGIF-ITEDECVLYIRTD 245 (251)
T ss_dssp E-EEEEE-SSEE--SEEE---S-EEEEEEEEEEEETTEEEET---TEEEEE-TT-EE--E-------EESS-EEEEEEES
T ss_pred eeeEEEEcCCCCcCceeccC-CceEEEEEEeEEEEeecccCC---CccccCCcccccCCccccccc-ccCCCEEEEEEEC
Confidence 44566788888889999998 799999999999986543211 578999999999999999998 6788898887655
Q ss_pred C
Q 027725 172 S 172 (219)
Q Consensus 172 s 172 (219)
.
T Consensus 246 G 246 (251)
T PF14499_consen 246 G 246 (251)
T ss_dssp S
T ss_pred C
Confidence 4
No 69
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=95.43 E-value=0.11 Score=43.00 Aligned_cols=88 Identities=18% Similarity=0.189 Sum_probs=68.1
Q ss_pred CCCcEEEEecccCCCCCCccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECC
Q 027725 71 SVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPK 150 (219)
Q Consensus 71 ~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~ 150 (219)
..|+.+..+...+-+ ...++++.+.||...+-|+|- +-|...|++|.. .+++| .+.+||.+.-+.
T Consensus 112 ~~G~rv~~v~l~~dd-----s~~V~llki~~g~s~P~HtH~-G~E~t~vl~G~~----sde~G-----~y~vgD~~~~d~ 176 (216)
T COG3806 112 GPGGRVEPVRLPTDD-----SRRVALLKIEPGRSFPDHTHV-GIERTAVLEGAF----SDENG-----EYLVGDFTLADG 176 (216)
T ss_pred cCCcceeecccCCCC-----CceeEEEEeccCccccccccc-ceEEEEEEeecc----ccCCC-----ccccCceeecCC
Confidence 445555555544433 457999999999999999997 899999999974 45544 578999999999
Q ss_pred CCeEEEEeCCCCCEEEEEEecCC
Q 027725 151 ALVHFQKNNGDKPASVISAFNSQ 173 (219)
Q Consensus 151 g~~H~~~N~g~~~a~~l~~~~s~ 173 (219)
++.|.-.-..+.++..++++..+
T Consensus 177 ~v~H~piv~~~~eClcl~al~~~ 199 (216)
T COG3806 177 TVQHSPIVLPPGECLCLAALDGP 199 (216)
T ss_pred ccccccccCCCCCceEEEEcCCC
Confidence 99999766667788888876643
No 70
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=95.39 E-value=0.079 Score=43.49 Aligned_cols=75 Identities=21% Similarity=0.233 Sum_probs=46.1
Q ss_pred EEEEcCCCcCCCCCCCCCcEEEEEE-eeEEEEEEEcc----------------CCeE------EEEEEcCCCEEEECCCC
Q 027725 96 RIDYEAGGLNPPHTHPRATEMIFVL-EGELDVGFIST----------------ADKL------ISKTVKKGEIYVFPKAL 152 (219)
Q Consensus 96 ~~~l~pg~~~~pH~H~~a~E~~~Vl-~G~~~v~~~~~----------------~~~~------~~~~L~~GDv~~~P~g~ 152 (219)
.+.+.+|...|+|.|.+-.|=++=- .|++.+..... +|.. -..+|++|+.+.+|+|+
T Consensus 90 iM~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~~~ag~~lkL~PGesitL~Pg~ 169 (225)
T COG3822 90 IMHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQTHTAGSQLKLSPGESITLPPGL 169 (225)
T ss_pred eEEeccCCcCcccccccchhhhhhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEEeccceeEEECCCCcEecCCCc
Confidence 3467899999999998655532222 23333333211 1211 13679999999999999
Q ss_pred eEEEEeCCCCCEEEEEEecC
Q 027725 153 VHFQKNNGDKPASVISAFNS 172 (219)
Q Consensus 153 ~H~~~N~g~~~a~~l~~~~s 172 (219)
.|+++..+.. +++.-.++
T Consensus 170 ~HsFwae~g~--vlvgEvSs 187 (225)
T COG3822 170 YHSFWAEEGG--VLVGEVSS 187 (225)
T ss_pred eeeeeecCCc--EEEEEEee
Confidence 9999975433 44443333
No 71
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=95.33 E-value=0.07 Score=46.01 Aligned_cols=50 Identities=14% Similarity=0.226 Sum_probs=39.5
Q ss_pred CCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCC
Q 027725 106 PPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGD 161 (219)
Q Consensus 106 ~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~ 161 (219)
.||-+. +-++.++++|++.+...+ + .+.+++||++++|+|.+|......+
T Consensus 43 r~~~~~-~~~i~~~~~G~~~~~~~~---~--~~~~~~g~~i~i~p~~~h~~~~~~~ 92 (290)
T PRK10572 43 RPLGMK-GYILNLTIRGQGVIFNGG---R--AFVCRPGDLLLFPPGEIHHYGRHPD 92 (290)
T ss_pred cCCCcc-ceEEEEEEeccEEEecCC---e--eEecCCCCEEEECCCCceeeccCCC
Confidence 345543 678999999999987644 3 7899999999999999998765433
No 72
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=95.00 E-value=0.21 Score=44.23 Aligned_cols=63 Identities=14% Similarity=0.227 Sum_probs=42.5
Q ss_pred EEEcCCC--cCCCCCCCCCcEEEEEEeeEEEEEEEccC------------------CeEEEEEEcCCCEEEECCCCeEEE
Q 027725 97 IDYEAGG--LNPPHTHPRATEMIFVLEGELDVGFISTA------------------DKLISKTVKKGEIYVFPKALVHFQ 156 (219)
Q Consensus 97 ~~l~pg~--~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~------------------~~~~~~~L~~GDv~~~P~g~~H~~ 156 (219)
+-+.|++ -..||+=. .+-+++=++|+=+..+.... ......+|++||++|+|+|.+|..
T Consensus 118 ~Y~tp~g~~g~~~H~D~-~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H~~ 196 (319)
T PF08007_consen 118 AYLTPPGSQGFGPHYDD-HDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWWHQA 196 (319)
T ss_dssp EEEETSSBEESECEE-S-SEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-EEEE
T ss_pred EEecCCCCCCccCEECC-cccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCccCCC
Confidence 4566666 67899876 67777778898777776521 113468999999999999999999
Q ss_pred EeCC
Q 027725 157 KNNG 160 (219)
Q Consensus 157 ~N~g 160 (219)
...+
T Consensus 197 ~~~~ 200 (319)
T PF08007_consen 197 VTTD 200 (319)
T ss_dssp EESS
T ss_pred CCCC
Confidence 9887
No 73
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=94.95 E-value=0.04 Score=45.89 Aligned_cols=56 Identities=18% Similarity=0.396 Sum_probs=47.9
Q ss_pred cCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEE
Q 027725 100 EAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQK 157 (219)
Q Consensus 100 ~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~ 157 (219)
.|+.....|..+ ++|++|-.+|...+-+.+ .++.....+++||++.+|+.++|.-+
T Consensus 41 GPN~RkdyHiee-geE~FyQ~KGdMvLKVie-~g~~rDivI~qGe~flLParVpHSPq 96 (279)
T KOG3995|consen 41 GPNTRKDYHIEE-GEEVFYQLKGDMVLKVLE-QGKHRDVVIRQGEIFLLPARVPHSPQ 96 (279)
T ss_pred CCCcccccccCC-cchhheeecCceEEeeec-cCcceeeEEecCcEEEeccCCCCChh
Confidence 566666788887 899999999999999987 46666889999999999999999753
No 74
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=94.50 E-value=0.18 Score=42.42 Aligned_cols=73 Identities=16% Similarity=0.188 Sum_probs=56.7
Q ss_pred ccceEEEEEEEcCCCcCCC-CCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEE
Q 027725 89 TLGVSLSRIDYEAGGLNPP-HTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVI 167 (219)
Q Consensus 89 ~~gis~~~~~l~pg~~~~p-H~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l 167 (219)
...+-+..+.++||+.++- -+|- -+-=+||++|+....+... ...+++||.+.+-+-.+.+....|....+.+
T Consensus 179 r~Dmhv~ivsFePGa~ip~aEtHv-mEHGlyvLeGk~vYrLn~d-----wv~V~aGD~mwm~A~cpQacyagG~g~frYL 252 (264)
T COG3257 179 RFDMHVHIVSFEPGASIPYAETHV-MEHGLYVLEGKGVYRLNNN-----WVPVEAGDYIWMGAYCPQACYAGGRGAFRYL 252 (264)
T ss_pred CcceEEEEEEecCCcccchhhhhh-hhcceEEEecceEEeecCc-----eEEeecccEEEeeccChhhhccCCCCceEEE
Confidence 4467788899999998763 4554 3445899999998877543 6799999999999999988887777655554
No 75
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.03 E-value=0.74 Score=41.36 Aligned_cols=74 Identities=18% Similarity=0.145 Sum_probs=51.0
Q ss_pred cceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEE
Q 027725 90 LGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISA 169 (219)
Q Consensus 90 ~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~ 169 (219)
.|+.+..-.+..+-....-...+++|++++.+|++++...- | ..++++||..+||+|+....+-.+.+ ++.+..
T Consensus 123 ~g~~i~~y~~n~sm~~~~f~NADge~Livpq~G~l~l~te~--G---~l~v~pgeiavIPRG~~frve~~~~~-~rgy~~ 196 (427)
T COG3508 123 DGVAIHVYKVNESMTKRFFRNADGELLIVPQQGELRLKTEL--G---VLEVEPGEIAVIPRGTTFRVELKDGE-ARGYGC 196 (427)
T ss_pred CceEEEEEEccccchhhhhhcCCCCEEEEeecceEEEEEee--c---eEEecCCcEEEeeCCceEEEEecCCc-eEEEEE
Confidence 35544433333332224455677899999999999886543 2 67899999999999999998765544 444443
No 76
>COG1741 Pirin-related protein [General function prediction only]
Probab=93.98 E-value=0.26 Score=43.00 Aligned_cols=71 Identities=21% Similarity=0.389 Sum_probs=53.3
Q ss_pred EEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECC--CCeEEEEeC--CCCCEEEEEEe
Q 027725 96 RIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPK--ALVHFQKNN--GDKPASVISAF 170 (219)
Q Consensus 96 ~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~--g~~H~~~N~--g~~~a~~l~~~ 170 (219)
...+.||.-.+||-|..=+-+.||++|+++.. |..|. ...+++||+-++-+ |..|.-.|. ..++...+-+.
T Consensus 48 ~~~~~pG~~f~pHPHrg~etvTyvl~G~i~Hr--DS~Gn--~~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~QlW 122 (276)
T COG1741 48 PDVLAPGRGFPPHPHRGLETVTYVLDGEIEHR--DSLGN--KGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGLQLW 122 (276)
T ss_pred cccccCCCcCCCCCCCCcEEEEEEEccEEEEe--ecCCc--eeeecccceeEEcCCCceeecccCCccCCCccceeeee
Confidence 34688999999999986666889999998875 44454 57899999988876 678998886 23456555543
No 77
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=93.94 E-value=0.17 Score=40.55 Aligned_cols=71 Identities=20% Similarity=0.310 Sum_probs=43.5
Q ss_pred EEEEEEEcCCCcCCCCCCCCCcE----EEEEE-eeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEE
Q 027725 93 SLSRIDYEAGGLNPPHTHPRATE----MIFVL-EGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVI 167 (219)
Q Consensus 93 s~~~~~l~pg~~~~pH~H~~a~E----~~~Vl-~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l 167 (219)
.+....+.||+.+.||.-+.... +-+++ .+...+.+.+ + ....++|++++|.-...|...|.|+++-+.+
T Consensus 81 ~~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v~~---~--~~~w~~G~~~~fD~s~~H~~~N~~~~~Rv~L 155 (163)
T PF05118_consen 81 RVRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRVGG---E--TRHWREGECWVFDDSFEHEVWNNGDEDRVVL 155 (163)
T ss_dssp EEEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEETT---E--EEB--CTEEEEE-TTS-EEEEESSSS-EEEE
T ss_pred hEEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEECC---e--EEEeccCcEEEEeCCEEEEEEeCCCCCEEEE
Confidence 35555789999999998763222 22233 2334444433 3 6788999999999999999999998765544
Q ss_pred E
Q 027725 168 S 168 (219)
Q Consensus 168 ~ 168 (219)
.
T Consensus 156 ~ 156 (163)
T PF05118_consen 156 I 156 (163)
T ss_dssp E
T ss_pred E
Confidence 3
No 78
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=93.92 E-value=0.24 Score=36.16 Aligned_cols=66 Identities=30% Similarity=0.482 Sum_probs=31.4
Q ss_pred EEEcCCCcCCCCCCCCCc--EEEEEE--eeEEEEEEEccC------------------CeEEEEEEcCCCEEEECCCCeE
Q 027725 97 IDYEAGGLNPPHTHPRAT--EMIFVL--EGELDVGFISTA------------------DKLISKTVKKGEIYVFPKALVH 154 (219)
Q Consensus 97 ~~l~pg~~~~pH~H~~a~--E~~~Vl--~G~~~v~~~~~~------------------~~~~~~~L~~GDv~~~P~g~~H 154 (219)
...++|+..++|.|+++. -+.||- ++...+.+.++. ........++||+++||.-+.|
T Consensus 5 ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~H 84 (101)
T PF13759_consen 5 NIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLWH 84 (101)
T ss_dssp EEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSEE
T ss_pred EEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCEE
Confidence 456788899999998532 233332 122222333221 1234567899999999999999
Q ss_pred EEE-eCCCC
Q 027725 155 FQK-NNGDK 162 (219)
Q Consensus 155 ~~~-N~g~~ 162 (219)
... |.+++
T Consensus 85 ~v~p~~~~~ 93 (101)
T PF13759_consen 85 GVPPNNSDE 93 (101)
T ss_dssp EE----SSS
T ss_pred eccCcCCCC
Confidence 985 44443
No 79
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=93.71 E-value=0.48 Score=40.94 Aligned_cols=65 Identities=17% Similarity=0.147 Sum_probs=45.1
Q ss_pred eEEEEEEEcCCCcC-----CCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCC
Q 027725 92 VSLSRIDYEAGGLN-----PPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGD 161 (219)
Q Consensus 92 is~~~~~l~pg~~~-----~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~ 161 (219)
+.+.++...+.... ..|.+.+.-.++++++|++.+...+ + ...+++||++++|.+.+|.+.-.+.
T Consensus 45 ~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~~g---~--~~~l~~G~~~l~~~~~p~~~~~~~~ 114 (302)
T PRK09685 45 LKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQDD---R--QVQLAAGDITLIDASRPCSIYPQGL 114 (302)
T ss_pred EEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEECC---e--EEEEcCCCEEEEECCCCcEeecCCC
Confidence 45666665554322 1344444455778899999987654 4 6799999999999999998765443
No 80
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=93.69 E-value=0.48 Score=39.40 Aligned_cols=86 Identities=19% Similarity=0.241 Sum_probs=61.3
Q ss_pred CCccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCC----------eEEEE------EE-cCCC-EEEE
Q 027725 87 LNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTAD----------KLISK------TV-KKGE-IYVF 148 (219)
Q Consensus 87 l~~~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~----------~~~~~------~L-~~GD-v~~~ 148 (219)
.+...+++....+++|..+|+|-||.=+-+.-|+.|++.+...+--. +.... ++ .+++ .+..
T Consensus 39 yE~~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL~ 118 (200)
T PF07847_consen 39 YEDEDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVLY 118 (200)
T ss_pred EECCCcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEEc
Confidence 44557789999999999999999996555666999999997654211 11111 12 2223 5566
Q ss_pred CC--CCeEEEEeCCCCCEEEEEEecCC
Q 027725 149 PK--ALVHFQKNNGDKPASVISAFNSQ 173 (219)
Q Consensus 149 P~--g~~H~~~N~g~~~a~~l~~~~s~ 173 (219)
|. |-+|.+.+.+ +++.++-++...
T Consensus 119 P~~ggNiH~f~a~~-~p~AflDIL~PP 144 (200)
T PF07847_consen 119 PTSGGNIHEFTALT-GPCAFLDILAPP 144 (200)
T ss_pred cCCCCeeEEEEeCC-CCeEEEEEccCC
Confidence 66 4999999987 889999888764
No 81
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=93.57 E-value=1.4 Score=38.38 Aligned_cols=84 Identities=19% Similarity=0.239 Sum_probs=54.9
Q ss_pred cceEEEEEEEcCCC---cCCCCCCCCCcEEEE-E--EeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCC
Q 027725 90 LGVSLSRIDYEAGG---LNPPHTHPRATEMIF-V--LEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKP 163 (219)
Q Consensus 90 ~gis~~~~~l~pg~---~~~pH~H~~a~E~~~-V--l~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~ 163 (219)
..+-+....+.||+ .-|||.|++..|..| . -++.-.+.+.++-++.+...++-+|+++.|+=.+|.-. |...
T Consensus 173 ~qLlmG~tvltPGg~WSSyPPHkHDrr~E~YlYf~l~~~qrV~h~mG~pdETrh~~v~n~~aVisP~wsih~g~--gt~~ 250 (276)
T PRK00924 173 CQLVMGLTELEPGSVWNTMPCHTHDRRMEVYFYFDMPEDARVFHFMGEPQETRHIVVHNEQAVISPSWSIHSGV--GTSN 250 (276)
T ss_pred ccEEEEEEEEcCCCCCCCCCCccCCCCcceEEEEEcCCCceEEecCCCccceeeEEEECCCEEECCCcceecCc--Cccc
Confidence 35566667778988 359999997667433 2 22322233333223433578999999999999999864 5566
Q ss_pred EEEEEEecCCCC
Q 027725 164 ASVISAFNSQLP 175 (219)
Q Consensus 164 a~~l~~~~s~~p 175 (219)
-.++.....+|-
T Consensus 251 y~fiw~m~gen~ 262 (276)
T PRK00924 251 YTFIWGMAGENQ 262 (276)
T ss_pred cEEEEEecccCc
Confidence 667776655553
No 82
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=93.50 E-value=0.42 Score=41.52 Aligned_cols=61 Identities=11% Similarity=0.039 Sum_probs=47.0
Q ss_pred cCCCcCCCCCC-CCCcEEEEEEeeEEEEEEEccCCeE-EEEEEcC-CCEEEECCCCeEEEEeCC
Q 027725 100 EAGGLNPPHTH-PRATEMIFVLEGELDVGFISTADKL-ISKTVKK-GEIYVFPKALVHFQKNNG 160 (219)
Q Consensus 100 ~pg~~~~pH~H-~~a~E~~~Vl~G~~~v~~~~~~~~~-~~~~L~~-GDv~~~P~g~~H~~~N~g 160 (219)
-|++...+|.| +..-|.+.|++|++.+.+.++++.. ....+.+ ++.-++|++..|...-.+
T Consensus 19 ~p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s 82 (287)
T PRK12335 19 LPEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAAS 82 (287)
T ss_pred chHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcC
Confidence 36778899999 5678999999999999988877743 3345555 456579999999997653
No 83
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=93.28 E-value=0.53 Score=39.13 Aligned_cols=71 Identities=20% Similarity=0.294 Sum_probs=42.4
Q ss_pred EEEEEEEcCCCcCCCCCCCCC--cEEEEEE--eeEEEEEEEccC-----------------C-eEEEEEEcCCCEEEECC
Q 027725 93 SLSRIDYEAGGLNPPHTHPRA--TEMIFVL--EGELDVGFISTA-----------------D-KLISKTVKKGEIYVFPK 150 (219)
Q Consensus 93 s~~~~~l~pg~~~~pH~H~~a--~E~~~Vl--~G~~~v~~~~~~-----------------~-~~~~~~L~~GDv~~~P~ 150 (219)
.+....+++|+....|.|+++ +-+.||. +|.....+.++. . ......-++|++++||.
T Consensus 97 ~~W~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS 176 (201)
T TIGR02466 97 KAWVNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFES 176 (201)
T ss_pred eEeEEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECC
Confidence 455567789999999999964 2344444 121222222210 0 01123448999999999
Q ss_pred CCeEEEE-eCCCCC
Q 027725 151 ALVHFQK-NNGDKP 163 (219)
Q Consensus 151 g~~H~~~-N~g~~~ 163 (219)
-+.|... |.++++
T Consensus 177 ~L~H~v~p~~~~~~ 190 (201)
T TIGR02466 177 WLRHEVPPNESEEE 190 (201)
T ss_pred CCceecCCCCCCCC
Confidence 9999975 444433
No 84
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=93.26 E-value=1 Score=32.92 Aligned_cols=66 Identities=21% Similarity=0.233 Sum_probs=43.8
Q ss_pred EEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEe
Q 027725 97 IDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAF 170 (219)
Q Consensus 97 ~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~ 170 (219)
-.+.||- .+....+.|++-|++|++++.+-+++ . .+.+++|+.+.+|++.-..++-. ++...+|.|
T Consensus 28 GVm~pGe---Y~F~T~~~E~M~vvsG~l~V~lpg~~-e--w~~~~aGesF~VpanssF~v~v~--~~~~Y~C~y 93 (94)
T PF06865_consen 28 GVMLPGE---YTFGTSAPERMEVVSGELEVKLPGED-E--WQTYSAGESFEVPANSSFDVKVK--EPTAYLCSY 93 (94)
T ss_dssp EEE-SEC---EEEEESS-EEEEEEESEEEEEETT-S-S---EEEETT-EEEE-TTEEEEEEES--S-EEEEEEE
T ss_pred EEEeeeE---EEEcCCCCEEEEEEEeEEEEEcCCCc-c--cEEeCCCCeEEECCCCeEEEEEC--cceeeEEEe
Confidence 3455655 33444579999999999999986532 2 67899999999999998887753 556666544
No 85
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=92.62 E-value=0.25 Score=36.19 Aligned_cols=29 Identities=28% Similarity=0.300 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCEEEECCCCeEEEEeCCCC
Q 027725 134 KLISKTVKKGEIYVFPKALVHFQKNNGDK 162 (219)
Q Consensus 134 ~~~~~~L~~GDv~~~P~g~~H~~~N~g~~ 162 (219)
+.+..+.++||.+++|+|..|+..|.|..
T Consensus 79 ~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~ 107 (114)
T PF02373_consen 79 PVYRFVQKPGEFVFIPPGAYHQVFNLGDN 107 (114)
T ss_dssp --EEEEEETT-EEEE-TT-EEEEEESSSE
T ss_pred ccccceECCCCEEEECCCceEEEEeCCce
Confidence 44577889999999999999999999864
No 86
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=92.57 E-value=0.7 Score=37.09 Aligned_cols=79 Identities=20% Similarity=0.260 Sum_probs=51.7
Q ss_pred eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCC------eEEEEEEcCCCEEEECCCCeEEEEeCCCCCEE
Q 027725 92 VSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTAD------KLISKTVKKGEIYVFPKALVHFQKNNGDKPAS 165 (219)
Q Consensus 92 is~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~------~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~ 165 (219)
+++..+.+.||...++|-|- -.-++=|+.|.-+-.+..-++ ....+.+.+|++- +-+|.+|.+.|++.....
T Consensus 73 ltV~~~t~~PG~~~p~HnH~-~wglVgil~G~E~n~~y~~~~~~~~~P~~qdk~~apgeV~-lSpgdihsv~n~~sdrs~ 150 (191)
T COG5553 73 LTVYHITLSPGVQYPPHNHL-MWGLVGILWGGETNFIYPLAGEEVDEPERQDKFAAPGEVH-LSPGDIHSVANTGSDRSG 150 (191)
T ss_pred EEEEEEEeCCCcccCCcccc-hheeeeeeecccccceecccCCCCCCcchhhhhcCcceEe-eCCCCeeeecccCCCccc
Confidence 47888999999999999995 677777888865443321111 1113456677776 444777777777766555
Q ss_pred EEEEecC
Q 027725 166 VISAFNS 172 (219)
Q Consensus 166 ~l~~~~s 172 (219)
.+.++-.
T Consensus 151 aiHvy~a 157 (191)
T COG5553 151 AIHVYLA 157 (191)
T ss_pred eEEEEec
Confidence 5555544
No 87
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.51 E-value=0.082 Score=49.09 Aligned_cols=59 Identities=17% Similarity=0.332 Sum_probs=44.8
Q ss_pred cCCC-cCCCCCCCCCcEEEEEEeeEEEEEEEccC-------------------C-eEEEEEEcCCCEEEECCCCeEEEEe
Q 027725 100 EAGG-LNPPHTHPRATEMIFVLEGELDVGFISTA-------------------D-KLISKTVKKGEIYVFPKALVHFQKN 158 (219)
Q Consensus 100 ~pg~-~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~-------------------~-~~~~~~L~~GDv~~~P~g~~H~~~N 158 (219)
+||+ -.+|||-. -+-+++-++|+=.+.+..+. | .+....|++||++|||+|.+|....
T Consensus 325 PagSqGfaPHyDd-IeaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IHQA~t 403 (629)
T KOG3706|consen 325 PAGSQGFAPHYDD-IEAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIHQADT 403 (629)
T ss_pred CCCCCCCCCchhh-hhhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhCCchHHhhcCCCcEEEecCcceeeccc
Confidence 5565 36899986 67788889999877776552 1 1345679999999999999998754
Q ss_pred C
Q 027725 159 N 159 (219)
Q Consensus 159 ~ 159 (219)
.
T Consensus 404 ~ 404 (629)
T KOG3706|consen 404 P 404 (629)
T ss_pred c
Confidence 3
No 88
>PRK10579 hypothetical protein; Provisional
Probab=92.33 E-value=2 Score=31.33 Aligned_cols=65 Identities=17% Similarity=0.231 Sum_probs=46.7
Q ss_pred EEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEe
Q 027725 98 DYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAF 170 (219)
Q Consensus 98 ~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~ 170 (219)
.+.||- .+.-..+.|+.-|++|++++.+-+.+ ..+.+++|+.+.+|++.-..++.. +....+|.|
T Consensus 29 Vm~pGe---y~F~T~~~E~MeivsG~l~V~Lpg~~---ew~~~~aG~sF~VpanssF~l~v~--~~t~Y~C~y 93 (94)
T PRK10579 29 VMAEGE---YTFSTAEPEEMTVISGALNVLLPGAT---DWQVYEAGEVFNVPGHSEFHLQVA--EPTSYLCRY 93 (94)
T ss_pred EEeeeE---EEEcCCCcEEEEEEeeEEEEECCCCc---ccEEeCCCCEEEECCCCeEEEEEC--cceeeEEEc
Confidence 345554 23334579999999999999886532 267999999999999998877653 445555543
No 89
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=92.02 E-value=0.85 Score=33.54 Aligned_cols=68 Identities=19% Similarity=0.214 Sum_probs=42.7
Q ss_pred EEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEe
Q 027725 95 SRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAF 170 (219)
Q Consensus 95 ~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~ 170 (219)
..++++||+.......+...-++||++|++.+ .+ . ...+.+|+.+++..|..-.+.+.+ +.++++.+-
T Consensus 2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v--~~---~--~~~~~~~~~~~l~~g~~i~~~a~~-~~a~~lll~ 69 (104)
T PF05726_consen 2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEV--GG---E--EDPLEAGQLVVLEDGDEIELTAGE-EGARFLLLG 69 (104)
T ss_dssp EEEEE-TT-EEEEEEETT-EEEEEEEESEEEE--TT---T--TEEEETTEEEEE-SECEEEEEESS-SSEEEEEEE
T ss_pred EEEEECCCCEEEeecCCCCEEEEEEEECcEEE--CC---C--cceECCCcEEEECCCceEEEEECC-CCcEEEEEE
Confidence 45778888864322222346689999999765 22 2 257999999999977666666653 667766553
No 90
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=91.63 E-value=2 Score=33.16 Aligned_cols=66 Identities=14% Similarity=0.137 Sum_probs=43.3
Q ss_pred eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCC
Q 027725 92 VSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDK 162 (219)
Q Consensus 92 is~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~ 162 (219)
+.+.++.......+...-+.+.--+.+.++|+..+...+ + ...+.+||+++++.+.++.+...+..
T Consensus 34 ~~l~~~~~~~~~~vr~~~~~~~~~l~~~~~G~~~~~~~g---~--~~~~~pg~~~l~d~~~~~~~~~~~~~ 99 (172)
T PF14525_consen 34 LRLSRISYGAQRRVRSDAPDDHYLLVLPLSGSARIEQGG---R--EVELAPGDVVLLDPGQPYRLEFSAGC 99 (172)
T ss_pred EEEEEEEcCCCEEEECCCCCCEEEEEEEccCCEEEEECC---E--EEEEcCCeEEEEcCCCCEEEEECCCc
Confidence 455555554333222211223455677788888887654 3 78999999999999999988765443
No 91
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=91.19 E-value=1.2 Score=40.69 Aligned_cols=59 Identities=17% Similarity=0.150 Sum_probs=41.5
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEE
Q 027725 91 GVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQK 157 (219)
Q Consensus 91 gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~ 157 (219)
.+.+.++++..+.... ...+.++++|++|++++... +. ...|++|+++++|++......
T Consensus 320 ~F~~~~~~l~~~~~~~---~~~~~~Illv~~G~~~i~~~---~~--~~~l~~G~~~fipa~~~~~~~ 378 (389)
T PRK15131 320 DFAFSLHDLSDQPTTL---SQQSAAILFCVEGEAVLWKG---EQ--QLTLKPGESAFIAANESPVTV 378 (389)
T ss_pred CcEEEEEEECCceEEe---cCCCcEEEEEEcceEEEEeC---Ce--EEEECCCCEEEEeCCCccEEE
Confidence 3566667775542222 22467999999999998542 33 578999999999998776654
No 92
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=90.77 E-value=1.8 Score=38.04 Aligned_cols=59 Identities=24% Similarity=0.244 Sum_probs=42.1
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEE
Q 027725 91 GVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQK 157 (219)
Q Consensus 91 gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~ 157 (219)
-+++.++++..... ...+ .+..+++|++|++++... +. ...|++|+.+++|++......
T Consensus 234 ~F~~~~~~~~~~~~--~~~~-~~~~il~v~~G~~~i~~~---~~--~~~l~~G~~~~ipa~~~~~~i 292 (302)
T TIGR00218 234 YFSVYKWDISGKAE--FIQQ-QSALILSVLEGSGRIKSG---GK--TLPLKKGESFFIPAHLGPFTI 292 (302)
T ss_pred CeEEEEEEeCCcee--eccC-CCcEEEEEEcceEEEEEC---CE--EEEEecccEEEEccCCccEEE
Confidence 56777777764421 1123 367899999999988642 23 578999999999999866554
No 93
>PLN02288 mannose-6-phosphate isomerase
Probab=90.12 E-value=0.92 Score=41.56 Aligned_cols=58 Identities=17% Similarity=0.226 Sum_probs=40.3
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCC
Q 027725 91 GVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKAL 152 (219)
Q Consensus 91 gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~ 152 (219)
.+++.++++.++.......+ .+.++++|++|++++.... ......|++|+++++|++.
T Consensus 333 eF~v~~~~l~~~~~~~~~~~-~gp~Illv~~G~~~i~~~~---~~~~~~l~~G~~~fv~a~~ 390 (394)
T PLN02288 333 EFEVDHCDVPPGASVVFPAV-PGPSVFLVIEGEGVLSTGS---SEDGTAAKRGDVFFVPAGT 390 (394)
T ss_pred ceEEEEEEeCCCCeEeecCC-CCCEEEEEEcCEEEEecCC---ccceEEEeceeEEEEeCCC
Confidence 46788888877754222223 3788999999999985322 2113569999999999864
No 94
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=89.54 E-value=1.9 Score=38.99 Aligned_cols=74 Identities=15% Similarity=0.164 Sum_probs=51.4
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEe
Q 027725 91 GVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAF 170 (219)
Q Consensus 91 gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~ 170 (219)
.+.+.++++++|.....-.-+ +.-+++|++|++++.-.+ +. ...+++||+++||+...-.+.. .+++...+-++
T Consensus 332 eF~v~~~~v~~g~~~~~~~~~-~~SIllv~~G~g~l~~~t--~~--~~~v~rG~V~fI~a~~~i~~~~-~sd~~~~yrAf 405 (411)
T KOG2757|consen 332 EFAVLETKVPTGESYKFPGVD-GPSILLVLKGSGILKTDT--DS--KILVNRGDVLFIPANHPIHLSS-SSDPFLGYRAF 405 (411)
T ss_pred ceeEEEeecCCCceEEeecCC-CceEEEEEecceEEecCC--CC--ceeeccCcEEEEcCCCCceeec-cCcceeeeecc
Confidence 457888888886653322333 678999999999887542 22 5789999999999998776543 34444444333
No 95
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=88.72 E-value=5 Score=28.51 Aligned_cols=60 Identities=20% Similarity=0.109 Sum_probs=41.8
Q ss_pred CCcCCCCCCCC-CcEEEEEEeeEEEEEEEccCCe--EEEEEEcCCCEEEECCCCeEEEEeCCC
Q 027725 102 GGLNPPHTHPR-ATEMIFVLEGELDVGFISTADK--LISKTVKKGEIYVFPKALVHFQKNNGD 161 (219)
Q Consensus 102 g~~~~pH~H~~-a~E~~~Vl~G~~~v~~~~~~~~--~~~~~L~~GDv~~~P~g~~H~~~N~g~ 161 (219)
.++...|.-.. .-..+-|++|++++...++++. .....+.+|+..++++...|.+.-.++
T Consensus 13 ~~l~~~H~TK~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~ 75 (82)
T PF09313_consen 13 AALLERHNTKAGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSD 75 (82)
T ss_dssp GGGGSSBCCSTTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESST
T ss_pred HHHHhhcCCCCCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCC
Confidence 34555564432 2236779999999999886542 235678999999999999999987654
No 96
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=87.69 E-value=6 Score=32.90 Aligned_cols=77 Identities=16% Similarity=0.138 Sum_probs=51.5
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeE-EEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEE
Q 027725 91 GVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKL-ISKTVKKGEIYVFPKALVHFQKNNGDKPASVIS 168 (219)
Q Consensus 91 gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~-~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~ 168 (219)
+.......+++|..+-..-.+ ...+.+|++|.+.+...+++|+. ....+.+||++-+..+..+.....-.++++++.
T Consensus 35 ~~~~~~~~~~kge~l~~~Gd~-~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~~~~~~~~~A~~ds~v~~ 112 (230)
T PRK09391 35 GLVASEFSYKKGEEIYGEGEP-ADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESGSTHRFTAEAIVDTTVRL 112 (230)
T ss_pred cceeeeEEECCCCEEECCCCC-CCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCCCcCCeEEEEcCceEEEE
Confidence 345667788888876554444 68899999999999988777753 344568999887665554433222234555444
No 97
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=87.60 E-value=0.74 Score=41.55 Aligned_cols=61 Identities=16% Similarity=0.221 Sum_probs=45.3
Q ss_pred EEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCC-----------------eEEEEEEcCCCEEEECCCCeEEEEeC
Q 027725 98 DYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTAD-----------------KLISKTVKKGEIYVFPKALVHFQKNN 159 (219)
Q Consensus 98 ~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~-----------------~~~~~~L~~GDv~~~P~g~~H~~~N~ 159 (219)
-..+||.+.+|+-+ -+-+++=..|+=+..+....+ .....+|.+||+.|+|+|.+|+-+..
T Consensus 125 ~a~~GGgvg~H~D~-YDVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp~~~H~gvae 202 (383)
T COG2850 125 FAAPGGGVGPHFDQ-YDVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYGVAE 202 (383)
T ss_pred EecCCCccCccccc-hheeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCCCCCcCCccc
Confidence 45789999999997 466666666776776654311 01246799999999999999998765
No 98
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=87.27 E-value=2.2 Score=28.63 Aligned_cols=56 Identities=7% Similarity=-0.039 Sum_probs=40.1
Q ss_pred EEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEe
Q 027725 98 DYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKN 158 (219)
Q Consensus 98 ~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N 158 (219)
.+.||.....+... ...+-|.+|++-+... +....+-|++||.+.+++|..-+...
T Consensus 3 ~L~~g~~~~lr~~~--~~~l~v~~G~vWlT~~---g~~~D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 3 ELAPGETLSLRAAA--GQRLRVESGRVWLTRE---GDPDDYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred EeCCCceEEeEcCC--CcEEEEccccEEEECC---CCCCCEEECCCCEEEeCCCCEEEEEe
Confidence 45666666555443 3349999999887653 33347899999999999998766654
No 99
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=86.89 E-value=2.4 Score=28.85 Aligned_cols=48 Identities=25% Similarity=0.433 Sum_probs=33.4
Q ss_pred EEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeE-EEEEEcCCCEE
Q 027725 98 DYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKL-ISKTVKKGEIY 146 (219)
Q Consensus 98 ~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~-~~~~L~~GDv~ 146 (219)
++++|..+-..-.+ ...+.+|++|.+.+...+.+++. ....+.+||++
T Consensus 3 ~~~~g~~i~~~g~~-~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~ 51 (91)
T PF00027_consen 3 TYKKGEVIYRQGDP-CDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIF 51 (91)
T ss_dssp EESTTEEEEETTSB-ESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEE
T ss_pred EECCCCEEEeCCCc-CCEEEEEEECceEEEeceecceeeeecceeeeccc
Confidence 45555544322222 68999999999999998876653 35677888876
No 100
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=85.49 E-value=9 Score=30.88 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=38.4
Q ss_pred EEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCe-EEEEEEcCCCEEEE
Q 027725 95 SRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADK-LISKTVKKGEIYVF 148 (219)
Q Consensus 95 ~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~-~~~~~L~~GDv~~~ 148 (219)
....+++|..+-..-.+ ...+.+|++|.+++...+.+|+ .....+.+||++-.
T Consensus 21 ~~~~~~kg~~l~~~g~~-~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 74 (211)
T PRK11753 21 HIHKYPAKSTLIHAGEK-AETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGE 74 (211)
T ss_pred eEEEeCCCCEEEeCCCC-CCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEee
Confidence 45677888766544344 6789999999999987776664 33456899998743
No 101
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=83.34 E-value=5.2 Score=33.68 Aligned_cols=86 Identities=17% Similarity=0.167 Sum_probs=55.2
Q ss_pred CcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEecCCCCc--cchhchhhhcCCCC
Q 027725 113 ATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPG--TQSIAATLFTATPP 190 (219)
Q Consensus 113 a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg--~~~~~~~lf~~~~~ 190 (219)
++..++|++|+...... |+......++||..+.|+|......-..+ +-++.--..--|. -+..++++|+ .
T Consensus 119 ad~y~tIL~G~~~~~~~---g~~~~evy~pGd~~~l~rg~a~~y~m~~~--tw~LEY~RG~IP~~lpf~~~dt~~s---T 190 (216)
T PF04622_consen 119 ADDYFTILSGEQWAWSP---GSLEPEVYKPGDSHHLPRGEAKQYQMPPG--TWALEYGRGWIPSMLPFGFADTLFS---T 190 (216)
T ss_pred eeeEEEEEEEEEEEEcC---CCCCceEeccCCEEEecCceEEEEEeCCC--eEEEEecCCchhhhhHHHHHHHHHh---c
Confidence 78899999999887653 44446788999999999999988765433 3333332222332 2234456665 4
Q ss_pred CCHHHHHHHcCCCHHH
Q 027725 191 VPDNVLTKAFQVGTKE 206 (219)
Q Consensus 191 ~~~~vl~~af~~~~~~ 206 (219)
++-..+-++..+..++
T Consensus 191 lDf~t~~~T~~~~~~~ 206 (216)
T PF04622_consen 191 LDFPTLYRTVYITARE 206 (216)
T ss_pred cchHHHHHHHHHHHHH
Confidence 6655666665555443
No 102
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=82.78 E-value=8.1 Score=34.32 Aligned_cols=58 Identities=21% Similarity=0.238 Sum_probs=40.6
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEE
Q 027725 91 GVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQ 156 (219)
Q Consensus 91 gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~ 156 (219)
.+++.+.++.. ....-.+ ++..+++|++|++++...+ + ...|++|+.+++|+...-+.
T Consensus 241 ~F~l~~~~i~~--~~~~~~~-~~~~il~v~eG~~~l~~~~---~--~~~l~~G~s~~ipa~~~~~~ 298 (312)
T COG1482 241 DFALYKWDISG--TAEFIKQ-ESFSILLVLEGEGTLIGGG---Q--TLKLKKGESFFIPANDGPYT 298 (312)
T ss_pred ceEEEEEeccC--hhhhccC-CCcEEEEEEcCeEEEecCC---E--EEEEcCCcEEEEEcCCCcEE
Confidence 35666666554 2221112 2789999999999987543 3 78999999999999955544
No 103
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=81.78 E-value=21 Score=30.87 Aligned_cols=97 Identities=15% Similarity=0.155 Sum_probs=48.6
Q ss_pred cEEEEecccCCCCCCccceEEEEEEEcCCC--cCCCCCCCCC--------cEEEEEE-e---eEEEEEEEccCC-eEEEE
Q 027725 74 SLVTAANVEKIPGLNTLGVSLSRIDYEAGG--LNPPHTHPRA--------TEMIFVL-E---GELDVGFISTAD-KLISK 138 (219)
Q Consensus 74 ~~~~~~~~~~~P~l~~~gis~~~~~l~pg~--~~~pH~H~~a--------~E~~~Vl-~---G~~~v~~~~~~~-~~~~~ 138 (219)
-.++.....+.+. ...+-+..+.-++|. .-|||.|++. +|+.|-. + |-+.-.+.+.+. .-...
T Consensus 135 R~V~~~i~~~~~~--~~~Lv~get~~~~G~WsSyPPH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~~~d~~~ 212 (261)
T PF04962_consen 135 RTVRNIIDPNVPP--ASRLVVGETITPGGNWSSYPPHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDPQLDEHY 212 (261)
T ss_dssp EEEEEEESTTT-----SS-EEEEEEETTT-EES-SEEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTSSSEEEE
T ss_pred EEEEEeeCCCCcc--cceEEEEEEEeCCCccCCcCCccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCCCCcEEE
Confidence 3454444444442 234455555534443 3599999852 5655542 2 333322222211 22367
Q ss_pred EEcCCCEEEECCCCeEEEEe-CCCCCEEEEEEecCCC
Q 027725 139 TVKKGEIYVFPKALVHFQKN-NGDKPASVISAFNSQL 174 (219)
Q Consensus 139 ~L~~GDv~~~P~g~~H~~~N-~g~~~a~~l~~~~s~~ 174 (219)
.++-||++.+|+| .|-+.. +| ....++.++...+
T Consensus 213 ~V~~~d~V~iP~g-yHp~~aapG-y~~Yylw~maG~~ 247 (261)
T PF04962_consen 213 VVRNGDAVLIPSG-YHPVVAAPG-YDMYYLWVMAGEN 247 (261)
T ss_dssp EEETTEEEEESTT-B-SEEEEEE-SSEEEEEEEESSS
T ss_pred EEECCCEEEeCCC-CCCcCcCCC-cCcEEEEEEEcCC
Confidence 8999999999999 333322 33 3455777766655
No 104
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=81.67 E-value=6.8 Score=31.41 Aligned_cols=54 Identities=15% Similarity=0.222 Sum_probs=37.1
Q ss_pred EEEEEcCCCcCCCCCCC-CCcEEEEEEeeEEEEEEEccCCeEE-EEEEcCCCEEEE
Q 027725 95 SRIDYEAGGLNPPHTHP-RATEMIFVLEGELDVGFISTADKLI-SKTVKKGEIYVF 148 (219)
Q Consensus 95 ~~~~l~pg~~~~pH~H~-~a~E~~~Vl~G~~~v~~~~~~~~~~-~~~L~~GDv~~~ 148 (219)
....+++|...-..--+ ....+++|++|.+++...+++|+.. ...+.+||++-.
T Consensus 7 ~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~ 62 (202)
T PRK13918 7 DTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGE 62 (202)
T ss_pred ceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeech
Confidence 34566777654332221 2578999999999999888777643 445699998754
No 105
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.01 E-value=8.5 Score=27.54 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=34.9
Q ss_pred CCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEE
Q 027725 112 RATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQK 157 (219)
Q Consensus 112 ~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~ 157 (219)
.+.|...|+.|.+++-+.+. . ..+...+|+.+.+|.+.-..++
T Consensus 40 a~~E~Mtvv~Gal~v~lpgs-~--dWq~~~~Ge~F~VpgnS~F~lq 82 (94)
T COG3123 40 AAPEEMTVVSGALTVLLPGS-D--DWQVYTAGEVFNVPGNSEFDLQ 82 (94)
T ss_pred CCceEEEEEeeEEEEEcCCC-c--ccEEecCCceEEcCCCCeEEEE
Confidence 36899999999999987653 2 2678999999999998866554
No 106
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=78.65 E-value=15 Score=32.08 Aligned_cols=52 Identities=13% Similarity=0.079 Sum_probs=37.6
Q ss_pred CcE-EEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEe--CCCCCEEEEEE
Q 027725 113 ATE-MIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKN--NGDKPASVISA 169 (219)
Q Consensus 113 a~E-~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N--~g~~~a~~l~~ 169 (219)
..| .++.+.|++++.+.+ + .+.+.+.|.+++|+|..-.... ....+++++..
T Consensus 73 rrE~giV~lgG~~~V~vdG---~--~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~ 127 (276)
T PRK00924 73 RRELGIINIGGAGTVTVDG---E--TYELGHRDALYVGKGAKEVVFASADAANPAKFYLN 127 (276)
T ss_pred CcEEEEEEccceEEEEECC---E--EEecCCCcEEEECCCCcEEEEEecCCCCCcEEEEE
Confidence 455 567788999998754 4 5679999999999998765543 23456776654
No 107
>PRK03606 ureidoglycolate hydrolase; Provisional
Probab=78.17 E-value=14 Score=29.75 Aligned_cols=64 Identities=8% Similarity=0.050 Sum_probs=48.0
Q ss_pred CCCCCCCCcEEEEEEeeEEEEEEEccCC-----eEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEE
Q 027725 106 PPHTHPRATEMIFVLEGELDVGFISTAD-----KLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISA 169 (219)
Q Consensus 106 ~pH~H~~a~E~~~Vl~G~~~v~~~~~~~-----~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~ 169 (219)
..-.|+.++|.++-+.|+-.+.++.+++ +.+....+.|+.+.+-+|++|...-.=+.+..++.+
T Consensus 72 ~mERHp~~sQafiPl~~~~~lvvVA~~~~~~~~~~raF~~~~~qgV~y~~G~WH~pl~~l~~~~dF~vv 140 (162)
T PRK03606 72 MLERHPLGSQAFIPLNGRPFLVVVAPDGDGDPGTPRAFVTNGRQGVNYHRGVWHHPLLALGEVSDFLVV 140 (162)
T ss_pred eEEeCCCceEEEEECCCCEEEEEEeCCCCCCccceEEEEecCCcEEEeCCCcccccccccCCCceEEEE
Confidence 4456787899999999998888886542 456789999999999999999764333344555444
No 108
>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]
Probab=77.90 E-value=50 Score=29.33 Aligned_cols=71 Identities=18% Similarity=0.273 Sum_probs=50.2
Q ss_pred CCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEecC--CCCccchhc
Q 027725 106 PPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNS--QLPGTQSIA 181 (219)
Q Consensus 106 ~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s--~~pg~~~~~ 181 (219)
..-+..+++-+++-.+|.+.+. ++-|| ..+.++++.+||+|.-..+--.|..+..++.++.. +-|+...++
T Consensus 148 safyNsDGDFLiVPQ~G~L~I~--TEfGr---llV~P~EI~VIpqG~RFsi~v~~~sRGYilEvYg~HF~LPDLGPIG 220 (446)
T KOG1417|consen 148 SAFYNSDGDFLIVPQQGRLWIT--TEFGR---LLVTPNEIAVIPQGIRFSIDVPGPSRGYILEVYGAHFQLPDLGPIG 220 (446)
T ss_pred ceeecCCCCEEEecccCcEEEE--eeccc---eeecccceEEeecccEEEEecCCCCcceEEEEecceeecCCCCccc
Confidence 4445555666666667877664 33454 56899999999999999887778888888888765 345555443
No 109
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=76.99 E-value=33 Score=26.74 Aligned_cols=76 Identities=16% Similarity=0.165 Sum_probs=53.1
Q ss_pred eEEEEEEEcCCCcCCCCCCCCCcEEEEEEee-EEEEEEEccCCeEEEEEEc----CCC--EEEECCCCeEEEEeCCCCCE
Q 027725 92 VSLSRIDYEAGGLNPPHTHPRATEMIFVLEG-ELDVGFISTADKLISKTVK----KGE--IYVFPKALVHFQKNNGDKPA 164 (219)
Q Consensus 92 is~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G-~~~v~~~~~~~~~~~~~L~----~GD--v~~~P~g~~H~~~N~g~~~a 164 (219)
.+....-+.++.....|.- +++|+.+...| .+++.+.+++|+.....|. +|+ .++||+|.....+..+....
T Consensus 41 ~T~Iy~LL~~~~~S~~Hrv-~sdEiw~~~~G~pl~l~~i~~dg~~~~~~LG~d~~~g~~~q~vVp~G~W~aa~l~~~~~y 119 (139)
T PF06172_consen 41 STSIYYLLTPGEFSAWHRV-DSDEIWHFHAGDPLELHLIDPDGSYETVVLGPDLAAGERPQVVVPAGTWQAAELEPEGDY 119 (139)
T ss_dssp -EEEEEEEETTBEEEEEEE-SSEEEEEEEEES-EEEEEECTTSTEEEEEESSTTCTTEBSEEEE-TTSEEEEEECESSSE
T ss_pred ceEEEEEEcCCCCCccEEc-CCCEEEEEEcCCCEEEEEEcCCCCeEEEEECCCCCCCceEEEEECCCEEEEccccCCCCE
Confidence 3555556777777777655 58999999998 6899999988876666663 343 78999999998865444555
Q ss_pred EEEE
Q 027725 165 SVIS 168 (219)
Q Consensus 165 ~~l~ 168 (219)
.+++
T Consensus 120 ~Lvs 123 (139)
T PF06172_consen 120 SLVS 123 (139)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5444
No 110
>PLN02868 acyl-CoA thioesterase family protein
Probab=76.47 E-value=10 Score=34.74 Aligned_cols=53 Identities=15% Similarity=0.239 Sum_probs=39.7
Q ss_pred EEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEE
Q 027725 95 SRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVF 148 (219)
Q Consensus 95 ~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~ 148 (219)
....+++|..+-.--.+ ...+++|++|++++...+.+++.....+++||++-.
T Consensus 32 ~~~~~~~Ge~I~~~Gd~-~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 32 VPKRYGKGEYVVREGEP-GDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGY 84 (413)
T ss_pred eEEEECCCCEEEeCCCc-CceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeeh
Confidence 34577777766443343 788999999999998877666655678899998873
No 111
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=75.65 E-value=13 Score=29.68 Aligned_cols=65 Identities=15% Similarity=0.203 Sum_probs=39.8
Q ss_pred CCCCCCCcEEEEEEeeEE-EEEEEccC------CeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEec
Q 027725 107 PHTHPRATEMIFVLEGEL-DVGFISTA------DKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFN 171 (219)
Q Consensus 107 pH~H~~a~E~~~Vl~G~~-~v~~~~~~------~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~ 171 (219)
.-.|+.++|.++-+.|+. .+.++.++ .++....+..|+.+.+-+|++|...-.=+++..++++-.
T Consensus 74 lERHp~tsQ~fiPl~~~~~~lvvVA~~~~~Pd~~~lrAF~~~~gqgV~~~~GvWH~~~~~l~~~~~f~vv~~ 145 (165)
T PF04115_consen 74 LERHPLTSQAFIPLDGSPWYLVVVAPDDDGPDPETLRAFLAPGGQGVNYHRGVWHHPLLPLDEPADFLVVDR 145 (165)
T ss_dssp EEE-TTB-EEEEESBS---EEEEEEESSSS-ECCCEEEEEE-SS-EEEE-TT-EE-S-EESSSEEEEEEEEE
T ss_pred eccCCCeeEEEEECCCCccEEEEEcCCCCCCCccceEEEEEcCCEEEEECCCceeCCccccCCcceEEEEeC
Confidence 345777899999999988 55555443 256788999999999999999987544446677776643
No 112
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=75.65 E-value=13 Score=25.81 Aligned_cols=53 Identities=19% Similarity=0.309 Sum_probs=35.7
Q ss_pred EEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCe-EEEEEEcCCCEEEE
Q 027725 95 SRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADK-LISKTVKKGEIYVF 148 (219)
Q Consensus 95 ~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~-~~~~~L~~GDv~~~ 148 (219)
....+++|...-..--+ ...+.+|++|.+.+...+++|+ .....+.+|+.+-.
T Consensus 18 ~~~~~~~g~~l~~~~~~-~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 71 (115)
T cd00038 18 EERRFPAGEVIIRQGDP-ADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGE 71 (115)
T ss_pred eeeeeCCCCEEEcCCCC-CCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcCh
Confidence 34567777765333233 5789999999999988776653 34556788887633
No 113
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=74.61 E-value=20 Score=24.84 Aligned_cols=53 Identities=17% Similarity=0.233 Sum_probs=35.9
Q ss_pred EEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCC-eEEEEEEcCCCEEEE
Q 027725 95 SRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTAD-KLISKTVKKGEIYVF 148 (219)
Q Consensus 95 ~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~-~~~~~~L~~GDv~~~ 148 (219)
....+++|...-.. ....+.+.+|++|.+.+...+.+| ......+.+||.+-.
T Consensus 18 ~~~~~~~g~~l~~~-g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 71 (120)
T smart00100 18 EPVRYPAGEVIIRQ-GDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGE 71 (120)
T ss_pred eEEEeCCCCEEEeC-CCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceech
Confidence 34567777765332 333688999999999998765444 334567788887644
No 114
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=74.54 E-value=14 Score=31.94 Aligned_cols=69 Identities=14% Similarity=0.070 Sum_probs=44.3
Q ss_pred EEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCC--------CEEEECCCCeEEEEeCCCCCE
Q 027725 93 SLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKG--------EIYVFPKALVHFQKNNGDKPA 164 (219)
Q Consensus 93 s~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~G--------Dv~~~P~g~~H~~~N~g~~~a 164 (219)
.+..++|++|.....-.. +.+-.++.++|++++.+.+. + ...+... |++++|+|..-.+...++ +
T Consensus 28 ~~~~l~L~~g~~~~~~~~-~~E~~vv~l~G~~~v~~~g~--~--~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~--a 100 (261)
T PF04962_consen 28 GFGVLRLEAGESLEFELE-RRELGVVNLGGKATVTVDGE--E--FYELGGRESVFDGPPDALYVPRGTKVVIFASTD--A 100 (261)
T ss_dssp ECCCEEEECCHCCCCCCC-SEEEEEEEESSSEEEEETTE--E--EEEE-TTSSGGGS--EEEEE-TT--EEEEESST--E
T ss_pred ceEEEEecCCCEEeccCC-CcEEEEEEeCCEEEEEeCCc--e--EEEecccccccCCCCcEEEeCCCCeEEEEEcCC--C
Confidence 445578888876655433 34556677899999988431 2 5667776 999999999988877544 5
Q ss_pred EEEE
Q 027725 165 SVIS 168 (219)
Q Consensus 165 ~~l~ 168 (219)
+++.
T Consensus 101 e~~~ 104 (261)
T PF04962_consen 101 EFAV 104 (261)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5443
No 115
>PHA00672 hypothetical protein
Probab=73.65 E-value=27 Score=27.02 Aligned_cols=70 Identities=11% Similarity=0.068 Sum_probs=54.0
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEE
Q 027725 91 GVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVI 167 (219)
Q Consensus 91 gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l 167 (219)
|+....+.++.|....--.|. -+-+++.+|..++..+++ ..+|+.-.++.-|+|.-...+...+..+..+
T Consensus 46 GvYARei~IPkGt~LtG~~hk--f~~~ii~sG~itV~tdge-----~~rl~g~~~i~~~aG~KragyAHeDT~wt~~ 115 (152)
T PHA00672 46 GVYARTIRIPAGVALTGALIK--VSTVLIFSGHATVFIGGE-----AVELRGYHVIPASAGRKQAFVAHADTDLTML 115 (152)
T ss_pred ceeEEEEeccCceeeeeeeeE--eeEEEEecccEEEEeCCc-----EEEEecceeeecCCCcccceeeeccceEEEE
Confidence 778888999999987777774 444599999999987543 6788888899999999888877655444433
No 116
>PHA02984 hypothetical protein; Provisional
Probab=71.95 E-value=27 Score=30.40 Aligned_cols=51 Identities=20% Similarity=0.335 Sum_probs=39.2
Q ss_pred EEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEE
Q 027725 116 MIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVIS 168 (219)
Q Consensus 116 ~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~ 168 (219)
++.+++|+.++.+.. +++..+..+++||.+.+.-+.-|.... .+....++.
T Consensus 96 FvlCl~G~~~I~~~~-~~~~is~~I~kGeaf~md~~t~h~i~T-~~knl~L~V 146 (286)
T PHA02984 96 FVLCLNGKTSIECFN-KGSKITNTIKKGEAFTLNLKTKYVTTT-KDKNLHLAV 146 (286)
T ss_pred EEEEcCCeEEEEEec-CCceeeeEEecCceEEEEccceEEEEe-CCCceEEEE
Confidence 445678999998876 455568899999999999999999864 445555544
No 117
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=69.83 E-value=16 Score=30.08 Aligned_cols=52 Identities=6% Similarity=-0.010 Sum_probs=37.1
Q ss_pred EEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeE-EEEEEcCCCEEEE
Q 027725 96 RIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKL-ISKTVKKGEIYVF 148 (219)
Q Consensus 96 ~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~-~~~~L~~GDv~~~ 148 (219)
...+++|...-..--+ ...+.+|++|.+++...+.+|+. ....+.+||++-.
T Consensus 33 ~~~~~kge~l~~~G~~-~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~ 85 (226)
T PRK10402 33 LFHFLAREYIVQEGQQ-PSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGE 85 (226)
T ss_pred heeeCCCCEEEcCCCC-CceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEe
Confidence 3466777765433233 68899999999999988877753 3456789998754
No 118
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=65.99 E-value=3.4 Score=36.23 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=18.6
Q ss_pred EEEEEcCCCEEEECCCCeEEE
Q 027725 136 ISKTVKKGEIYVFPKALVHFQ 156 (219)
Q Consensus 136 ~~~~L~~GDv~~~P~g~~H~~ 156 (219)
....+++||++++|+|.+|..
T Consensus 151 n~v~v~~Gd~i~ipaGt~HA~ 171 (302)
T TIGR00218 151 NRIKLKPGDFFYVPSGTPHAY 171 (302)
T ss_pred cccccCCCCEEEeCCCCcccc
Confidence 357899999999999999983
No 119
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=65.50 E-value=5.4 Score=35.42 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.7
Q ss_pred EEEEEcCCCEEEECCCCeEEEE
Q 027725 136 ISKTVKKGEIYVFPKALVHFQK 157 (219)
Q Consensus 136 ~~~~L~~GDv~~~P~g~~H~~~ 157 (219)
....|++||.+++|+|.+|...
T Consensus 158 n~v~lkpGe~~fl~Agt~HA~~ 179 (312)
T COG1482 158 NRVKLKPGEAFFLPAGTPHAYL 179 (312)
T ss_pred cEEecCCCCEEEecCCCceeec
Confidence 3678999999999999999984
No 120
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=63.99 E-value=29 Score=27.26 Aligned_cols=56 Identities=13% Similarity=0.102 Sum_probs=39.3
Q ss_pred EEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeE-EEEEEcCCCEEEECC
Q 027725 94 LSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKL-ISKTVKKGEIYVFPK 150 (219)
Q Consensus 94 ~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~-~~~~L~~GDv~~~P~ 150 (219)
.....+++|...-..--+ ++-+.+|++|.+.+....++|+. ....+.+||++-...
T Consensus 23 ~~~~~~~~g~~l~~~g~~-~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~ 79 (214)
T COG0664 23 LEVRKLPKGEVLFTEGEE-ADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELA 79 (214)
T ss_pred ceeEeeCCCCEEEcCCCc-CceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHH
Confidence 344566777554444444 56689999999999999877753 344688999886664
No 121
>PHA02890 hypothetical protein; Provisional
Probab=63.96 E-value=47 Score=28.75 Aligned_cols=56 Identities=14% Similarity=0.275 Sum_probs=40.7
Q ss_pred EEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEE-EecCCCC
Q 027725 116 MIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVIS-AFNSQLP 175 (219)
Q Consensus 116 ~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~-~~~s~~p 175 (219)
++.+++|+.++.+.. +++..+..+++||.+.+.-+.-|.... ....++. .+....|
T Consensus 95 FVlCL~Gs~~In~~~-~d~~iS~~I~kGeaF~mdv~t~H~i~T---Knl~L~Viky~vd~p 151 (278)
T PHA02890 95 FVACIEGSCKINVNI-GDREISDHIHENQGFIMDVGLDHAIDS---DNVGLFITKFEVDAH 151 (278)
T ss_pred EEEEeCCeEEEEEec-CCceeeeeeecCceEEEEccceEEEEc---cceeEEEEEEEecce
Confidence 445678999998765 456678899999999999999999865 4444443 3444443
No 122
>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]
Probab=62.66 E-value=37 Score=29.08 Aligned_cols=87 Identities=16% Similarity=0.203 Sum_probs=57.1
Q ss_pred CCccceEEEEEEEcCCCc---CCCCCCCCCcEEEEEE---eeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCC
Q 027725 87 LNTLGVSLSRIDYEAGGL---NPPHTHPRATEMIFVL---EGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNG 160 (219)
Q Consensus 87 l~~~gis~~~~~l~pg~~---~~pH~H~~a~E~~~Vl---~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g 160 (219)
+++.++.+....++||.+ .|+|.|.|..|..+-. +-+-.+.+.++.++.+...++--+.++-|+=.+|.-. |
T Consensus 172 ~~scQL~mG~T~L~pgsvWNTMP~H~HdRRmE~YlYF~m~e~srVfH~MGqP~ETRHiv~~NEqAViSP~WSIHSG~--G 249 (278)
T COG3717 172 LESCQLSMGLTMLAPGSVWNTMPCHVHDRRMEVYLYFDMDEDSRVFHMMGQPQETRHIVMHNEQAVISPPWSIHSGV--G 249 (278)
T ss_pred hhhhhhhhcceeecCCCccccCCccccccceeEEEEecCCCcceEEEecCCCCceeEEEEeccceeeCCCceeecCc--c
Confidence 344456777788999985 5899999988855432 2233344444444444566777788888888888763 5
Q ss_pred CCCEEEEEEecCCCC
Q 027725 161 DKPASVISAFNSQLP 175 (219)
Q Consensus 161 ~~~a~~l~~~~s~~p 175 (219)
...-.++.....+|-
T Consensus 250 T~~YtFIWaMaGeN~ 264 (278)
T COG3717 250 TANYTFIWAMAGENQ 264 (278)
T ss_pred ccceEEEEEeccccc
Confidence 556666766655554
No 123
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=61.90 E-value=8.6 Score=35.20 Aligned_cols=23 Identities=17% Similarity=0.067 Sum_probs=20.1
Q ss_pred EEEEEEcCCCEEEECCCCeEEEE
Q 027725 135 LISKTVKKGEIYVFPKALVHFQK 157 (219)
Q Consensus 135 ~~~~~L~~GDv~~~P~g~~H~~~ 157 (219)
.....|++||.+++|+|.+|...
T Consensus 236 LN~v~l~pGeaifipAg~~HAyl 258 (389)
T PRK15131 236 LNVVKLNPGEAMFLFAETPHAYL 258 (389)
T ss_pred eeEEEeCCCCEEEeCCCCCeEEc
Confidence 34678999999999999999974
No 124
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=61.60 E-value=26 Score=30.70 Aligned_cols=46 Identities=11% Similarity=0.073 Sum_probs=37.0
Q ss_pred cEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEeCCCCC
Q 027725 114 TEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKP 163 (219)
Q Consensus 114 ~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~ 163 (219)
.-++++.+|.+.+.-.+ +. ...+.++..+++|++..|.+.|...+.
T Consensus 39 ~~li~v~~G~~~i~~~~--g~--~l~i~~p~~~~~p~~~~~~~~~~~~~~ 84 (291)
T PRK15186 39 SVLIKLTTGKISITTSS--GE--YITASGPMLIFLAKDQTIHITMEETHE 84 (291)
T ss_pred eEEEEeccceEEEEeCC--Cc--eEEeCCCeEEEEeCCcEEEEEecccCC
Confidence 46899999999886433 33 468999999999999999999876544
No 125
>PRK13395 ureidoglycolate hydrolase; Provisional
Probab=59.33 E-value=53 Score=26.59 Aligned_cols=65 Identities=11% Similarity=0.042 Sum_probs=47.6
Q ss_pred CCCCCCCCcEEEEEEee-EEEEEEEccCC-----eEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEe
Q 027725 106 PPHTHPRATEMIFVLEG-ELDVGFISTAD-----KLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAF 170 (219)
Q Consensus 106 ~pH~H~~a~E~~~Vl~G-~~~v~~~~~~~-----~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~ 170 (219)
..-.|+.+++.++-+.| ...+.++.+++ .........|+.+.+-+|++|...-.=+.+..++++-
T Consensus 72 ~mERHp~~sQafiPl~~~~~~lvVvap~~~~~pd~~~aF~~~g~qgV~y~~GtWH~pl~~L~~~~dF~vvd 142 (171)
T PRK13395 72 MMERHPLGSQAFIPLAAVSRYAVVVAPAGEFRPDEMRAFLAEGWQGVNYAKGVWHHPLLALDAVSDFVVVD 142 (171)
T ss_pred eEEECCCceEEEEECCCCCCEEEEEccCCCCCCCceEEEEecCCcEEEeCCCcccccccccCCCccEEEEe
Confidence 34467778999998999 77776665432 4567899999999999999998754444455666653
No 126
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=58.75 E-value=42 Score=27.53 Aligned_cols=51 Identities=10% Similarity=0.034 Sum_probs=35.0
Q ss_pred EEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEE-EEEEcCCCEEEE
Q 027725 97 IDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLI-SKTVKKGEIYVF 148 (219)
Q Consensus 97 ~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~-~~~L~~GDv~~~ 148 (219)
..+++|...-.---+ ...+.+|++|.+++...+++|+.. ...+.+||++-.
T Consensus 40 ~~~~kge~l~~~Gd~-~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~ 91 (235)
T PRK11161 40 KPIQKGQTLFKAGDE-LKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGF 91 (235)
T ss_pred eeecCCCEeECCCCC-cceEEEEeeceEEEEEECCCCCEEEEEeccCCceecc
Confidence 356666654333233 678999999999999887777543 334589998854
No 127
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=57.88 E-value=17 Score=32.49 Aligned_cols=43 Identities=21% Similarity=0.043 Sum_probs=30.5
Q ss_pred eEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEecCCCCc
Q 027725 134 KLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPG 176 (219)
Q Consensus 134 ~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg 176 (219)
+...-..++|+.+++|.|..|-..|...+-|+.--..+..|.+
T Consensus 261 kPIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~ 303 (407)
T KOG2130|consen 261 KPIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFP 303 (407)
T ss_pred CCceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCc
Confidence 3346678999999999999999999765544433334444543
No 128
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=56.98 E-value=54 Score=26.92 Aligned_cols=51 Identities=12% Similarity=0.169 Sum_probs=35.2
Q ss_pred EEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEE
Q 027725 96 RIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYV 147 (219)
Q Consensus 96 ~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~ 147 (219)
...+++|...-. -....+.+.+|++|.+.+.....+++.....+.+||++-
T Consensus 32 ~~~~~~ge~l~~-~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g 82 (236)
T PRK09392 32 LQRFPPGTMLIT-EGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFI 82 (236)
T ss_pred eeecCCCCEEEe-CCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhh
Confidence 456777766542 233478899999999999876544444456778898764
No 129
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=54.42 E-value=30 Score=27.11 Aligned_cols=52 Identities=17% Similarity=0.151 Sum_probs=41.0
Q ss_pred CcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEe---CCCCCEEEEEE
Q 027725 113 ATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKN---NGDKPASVISA 169 (219)
Q Consensus 113 a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N---~g~~~a~~l~~ 169 (219)
..-+.+|++|+=++.+++. .+...+|++++.+.+++-..+- ..++|...+.+
T Consensus 23 ~p~i~~vlQG~K~~~~g~~-----~~~Y~~g~~lv~~~~lPv~~~v~~AS~~~P~l~l~l 77 (155)
T PF06719_consen 23 EPSICIVLQGSKRVHLGDQ-----VFEYDAGQYLVSSVDLPVESEVVEASPEEPYLALSL 77 (155)
T ss_pred CCeEEEEEeeeEEEEECCc-----eEEecCCcEEEecCCCcEEEEEeeccCCCCEEEEEE
Confidence 3568999999999988764 7899999999999999876643 34567666664
No 130
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=53.06 E-value=33 Score=26.99 Aligned_cols=35 Identities=11% Similarity=0.311 Sum_probs=27.8
Q ss_pred CcEEEEEEeeEEEEEEEccCCeEE-EEEEcCCCEEE
Q 027725 113 ATEMIFVLEGELDVGFISTADKLI-SKTVKKGEIYV 147 (219)
Q Consensus 113 a~E~~~Vl~G~~~v~~~~~~~~~~-~~~L~~GDv~~ 147 (219)
.+.+.+|++|.+.+...+++|+.. ...+.+||++-
T Consensus 11 ~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G 46 (193)
T TIGR03697 11 AEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFG 46 (193)
T ss_pred CCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEee
Confidence 567899999999999888777543 46679999774
No 131
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=51.47 E-value=1.6e+02 Score=25.40 Aligned_cols=76 Identities=12% Similarity=0.139 Sum_probs=51.0
Q ss_pred CCCCCCccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccC----C-eEEEEEEcCCCEEEECCCCeEEEE
Q 027725 83 KIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTA----D-KLISKTVKKGEIYVFPKALVHFQK 157 (219)
Q Consensus 83 ~~P~l~~~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~----~-~~~~~~L~~GDv~~~P~g~~H~~~ 157 (219)
+-+++.-. .+...++.+|....--.-. .+-++++++|++++...+.. | |.-.++=++=|++++|.|......
T Consensus 22 ~sagw~YV--GF~~~~L~~Ges~~~~~~~-~E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYvp~g~~~~vt 98 (270)
T COG3718 22 ESAGWEYV--GFRLLRLAAGESATEETGD-RERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYVPAGSAFSVT 98 (270)
T ss_pred CCCCceeE--EEEEEEccCCCcccccCCC-ceEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEecCCceEEEE
Confidence 33445433 4555688999887766554 46678889999999765432 2 222233356699999999998887
Q ss_pred eCCC
Q 027725 158 NNGD 161 (219)
Q Consensus 158 N~g~ 161 (219)
..++
T Consensus 99 A~t~ 102 (270)
T COG3718 99 ATTD 102 (270)
T ss_pred eecc
Confidence 6544
No 132
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=49.89 E-value=45 Score=30.08 Aligned_cols=84 Identities=17% Similarity=0.201 Sum_probs=60.3
Q ss_pred CCCcEEEEecccCCCCCCccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCe-EEEEEEcCCCEE--E
Q 027725 71 SVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADK-LISKTVKKGEIY--V 147 (219)
Q Consensus 71 ~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~-~~~~~L~~GDv~--~ 147 (219)
..|..+..++... ++.-..+.|++++..-+..-+...++..+-.++|...++.+..++|+ .-...|++||-+ +
T Consensus 250 ~sG~eVlvVd~~G----~tR~~~VGRvKIE~RPL~lIeAe~~g~~~~viLQnaetIrlv~~dG~~vsVt~Lk~GD~VL~~ 325 (344)
T PRK02290 250 RSGDEVLVVDADG----NTREAIVGRVKIEKRPLLLIEAEYGGKRIRTILQNAETIRLVTPDGKPVSVVDLKPGDEVLGY 325 (344)
T ss_pred cCCCEEEEEeCCC----CEEEEEeeEEEEeeccEEEEEEEeCCeEEEEEEecCcEEEEECCCCCEeeeeecCCCCEEEEE
Confidence 4466665554332 12235678889988887766655568999999999999999999886 456789999954 5
Q ss_pred ECCCCeEEEEe
Q 027725 148 FPKALVHFQKN 158 (219)
Q Consensus 148 ~P~g~~H~~~N 158 (219)
++.+--|+-..
T Consensus 326 ~~~~~RHfG~~ 336 (344)
T PRK02290 326 LEEAARHFGMA 336 (344)
T ss_pred ecCCcccccce
Confidence 66677777543
No 133
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=49.26 E-value=87 Score=24.53 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=38.7
Q ss_pred CCCCCCCCcEEEEEEeeEEEEEEEccC------------------CeEEEEEEcCCCEEEECCCCeEEEE
Q 027725 106 PPHTHPRATEMIFVLEGELDVGFISTA------------------DKLISKTVKKGEIYVFPKALVHFQK 157 (219)
Q Consensus 106 ~pH~H~~a~E~~~Vl~G~~~v~~~~~~------------------~~~~~~~L~~GDv~~~P~g~~H~~~ 157 (219)
.+-.|.+--.+-|+++|+-.+++.... +......|++|+.++|.++-+|...
T Consensus 58 ~~E~Hr~YiDIq~~l~G~E~i~~~~~~~~~~~~~y~~e~D~~f~~~~~~~v~l~~G~F~iffP~daH~P~ 127 (149)
T PRK10202 58 LFTGHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLKGCGETVEVHEGQIVICDIHEAYRFI 127 (149)
T ss_pred cccccccEEEEEEEEeCeEEEEEEEcccCccccccCcccCeeeccCCCcEEEeCCCeEEEECCcccccCC
Confidence 445666678899999999988886431 1112567899999999999999875
No 134
>COG1741 Pirin-related protein [General function prediction only]
Probab=46.17 E-value=2e+02 Score=25.07 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=29.1
Q ss_pred CCCCCccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEE
Q 027725 84 IPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDV 126 (219)
Q Consensus 84 ~P~l~~~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v 126 (219)
.|.-+.. +.+..+.+++|+..+.+ -..-.-++||++|++.+
T Consensus 166 ~pv~~~~-~~~~dl~l~~g~~~~l~-~~~~~~~l~v~~G~l~v 206 (276)
T COG1741 166 SPVRQDS-LHYVDLRLEAGARLQLP-PAGRRAYLYVIEGTLEV 206 (276)
T ss_pred cccccce-eEEEEEEeCCCceEecC-CCCceEEEEEEEeEEEE
Confidence 4444444 67788888999987766 22245689999998877
No 135
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=46.17 E-value=39 Score=23.74 Aligned_cols=62 Identities=24% Similarity=0.381 Sum_probs=35.5
Q ss_pred EEcCCCcCCCCCCC---CCcEEEEE--Ee-eE-----EEEEEEcc---CCeEEEEE-----EcCCCEEEECC-CCeEEEE
Q 027725 98 DYEAGGLNPPHTHP---RATEMIFV--LE-GE-----LDVGFIST---ADKLISKT-----VKKGEIYVFPK-ALVHFQK 157 (219)
Q Consensus 98 ~l~pg~~~~pH~H~---~a~E~~~V--l~-G~-----~~v~~~~~---~~~~~~~~-----L~~GDv~~~P~-g~~H~~~ 157 (219)
...+|+...||+.. ....+.++ ++ -. +...+... ++...... .++|++++|+. ...|...
T Consensus 5 ~y~~G~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F~~~~~~H~v~ 84 (100)
T PF13640_consen 5 RYPPGGFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIFPSDNSLHGVT 84 (100)
T ss_dssp EEETTEEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEEESCTCEEEEE
T ss_pred EECcCCEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEEeCCCCeecCc
Confidence 45788888888865 33333333 33 11 23333321 12212233 88999999999 9999987
Q ss_pred eC
Q 027725 158 NN 159 (219)
Q Consensus 158 N~ 159 (219)
-.
T Consensus 85 ~v 86 (100)
T PF13640_consen 85 PV 86 (100)
T ss_dssp EE
T ss_pred cc
Confidence 66
No 136
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=44.82 E-value=24 Score=26.86 Aligned_cols=26 Identities=12% Similarity=0.367 Sum_probs=20.9
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHhhcC
Q 027725 190 PVPDNVLTKAFQVGTKEIEKIKSKLA 215 (219)
Q Consensus 190 ~~~~~vl~~af~~~~~~v~~l~~~~~ 215 (219)
|+++..+++..++++++|+++++..+
T Consensus 72 GFsD~~IA~l~~~~e~~vr~~R~~~~ 97 (123)
T PF02787_consen 72 GFSDRQIARLWGVSEEEVRELRKEHG 97 (123)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHHHHT
T ss_pred CCCHHHHHhccCCCHHHHHHHHHHcC
Confidence 79999999999999999999998754
No 137
>PF13994 PgaD: PgaD-like protein
Probab=44.80 E-value=28 Score=26.88 Aligned_cols=24 Identities=21% Similarity=0.639 Sum_probs=21.8
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHhh
Q 027725 190 PVPDNVLTKAFQVGTKEIEKIKSK 213 (219)
Q Consensus 190 ~~~~~vl~~af~~~~~~v~~l~~~ 213 (219)
+++++-+++.|++++++++++++.
T Consensus 100 ~~~~~elA~~f~l~~~~l~~lr~~ 123 (138)
T PF13994_consen 100 PVSDEELARSFGLSPEQLQQLRQA 123 (138)
T ss_pred CCCHHHHHHHcCCCHHHHHHHHhC
Confidence 389999999999999999999863
No 138
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=42.99 E-value=31 Score=27.44 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHcCCCHHHHHHHHhh
Q 027725 189 PPVPDNVLTKAFQVGTKEIEKIKSK 213 (219)
Q Consensus 189 ~~~~~~vl~~af~~~~~~v~~l~~~ 213 (219)
+.++++-+++.|+++++.++++++.
T Consensus 97 ~~l~~dElA~sF~l~~e~i~qLr~~ 121 (153)
T PRK14584 97 PDLDDDELASSFALSPELIAQLKSG 121 (153)
T ss_pred CCCChHHHHHHcCCCHHHHHHHHhC
Confidence 4699999999999999999999863
No 139
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=42.82 E-value=29 Score=27.03 Aligned_cols=25 Identities=0% Similarity=0.074 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHcCCCHHHHHHHHhh
Q 027725 189 PPVPDNVLTKAFQVGTKEIEKIKSK 213 (219)
Q Consensus 189 ~~~~~~vl~~af~~~~~~v~~l~~~ 213 (219)
+.++++.++++|++++|.++++++.
T Consensus 88 ~~~~~~eLA~Sf~is~el~~qL~~~ 112 (137)
T PRK14585 88 YQYTPQEYAESLAIPDELYQQLQKS 112 (137)
T ss_pred CCCChHHHHHHcCCCHHHHHHHhcC
Confidence 4789999999999999999999863
No 140
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=42.69 E-value=29 Score=31.63 Aligned_cols=63 Identities=22% Similarity=0.219 Sum_probs=45.2
Q ss_pred EEc-CCCcCCCC---CCCCCcEEEEEEeeEEEEEEEccCC-------------------------eEEEEEEcCCCEEEE
Q 027725 98 DYE-AGGLNPPH---THPRATEMIFVLEGELDVGFISTAD-------------------------KLISKTVKKGEIYVF 148 (219)
Q Consensus 98 ~l~-pg~~~~pH---~H~~a~E~~~Vl~G~~~v~~~~~~~-------------------------~~~~~~L~~GDv~~~ 148 (219)
-+. .|...+.| +| +.-+-..+.|.=+.-+..+.. +..+..-++|+.+.+
T Consensus 203 y~Gp~gSwtp~HaDVf~--s~swS~nicG~KrWl~~pP~qe~~l~dr~gnlp~~~~~~~ld~~~~~~lei~Qepge~VFv 280 (427)
T KOG2131|consen 203 YAGPAGSWTPFHADVFH--SPSWSVNICGRKRWLLYPPEQEQTLADRYGNLPLPSWITKLDLFRGPLLEIFQEPGETVFV 280 (427)
T ss_pred EeccCCCCCccchhhhc--CCcceeeeecceeEEEeChHHhhhhhhhccCcCCccccccccccccchhhhhccCCceeec
Confidence 344 45567888 66 466778888887777665421 112233479999999
Q ss_pred CCCCeEEEEeCCCC
Q 027725 149 PKALVHFQKNNGDK 162 (219)
Q Consensus 149 P~g~~H~~~N~g~~ 162 (219)
|.|..|...|.+++
T Consensus 281 PsGW~hQV~NL~dT 294 (427)
T KOG2131|consen 281 PSGWHHQVLNLGDT 294 (427)
T ss_pred cCccccccccccce
Confidence 99999999999875
No 141
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=42.51 E-value=47 Score=33.05 Aligned_cols=48 Identities=17% Similarity=0.355 Sum_probs=35.4
Q ss_pred EEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEE
Q 027725 98 DYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIY 146 (219)
Q Consensus 98 ~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~ 146 (219)
.+.||..+--.-.+ -+|+.||++|++++.-.+..+......|++||.+
T Consensus 446 ~f~pge~iireGd~-v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~ 493 (727)
T KOG0498|consen 446 YFTPGEYIIREGDP-VTDMYFIVRGSLESITTDGGGFFVVAILGPGDFF 493 (727)
T ss_pred ccCCCCeEEecCCc-cceeEEEEeeeEEEEEccCCceEEEEEecCCCcc
Confidence 45666666555566 7999999999998765543344557899999986
No 142
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=42.50 E-value=93 Score=24.75 Aligned_cols=59 Identities=12% Similarity=0.131 Sum_probs=42.7
Q ss_pred CcCCCCCCCCCcEEEEEEeeEEEEEEEccCC--------------------eEEEEEEcCCCEEEECCCCeEEEEeCCC
Q 027725 103 GLNPPHTHPRATEMIFVLEGELDVGFISTAD--------------------KLISKTVKKGEIYVFPKALVHFQKNNGD 161 (219)
Q Consensus 103 ~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~--------------------~~~~~~L~~GDv~~~P~g~~H~~~N~g~ 161 (219)
....+-.|.+--++-++++|+=.+++....+ .....+|.+|+..+|=+|-+|.......
T Consensus 59 ~~~~~E~HrkYiDiqill~G~E~i~~s~~~~~~~~e~y~~e~Di~~~~~~~~e~~v~L~~G~faiFfP~e~H~P~c~~~ 137 (154)
T COG2731 59 EEKKFELHRKYIDIQILLKGQEGIEYSPKETAQVKEDYDEEKDIIFYKGIEDESTVELNPGMFAIFFPGEPHRPGCNVG 137 (154)
T ss_pred hhcchhhhhheEEEEEEEeceeeeEEccCcCCccccccccccCEEeecCCccceEEEeCCCCEEEECCCCccccccccC
Confidence 3344555666789999999998888765421 1235789999999999999998754443
No 143
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=42.02 E-value=57 Score=21.28 Aligned_cols=31 Identities=10% Similarity=0.163 Sum_probs=20.8
Q ss_pred EEEEEccCCeEEEEEEcCCCEEEECCCCeEE
Q 027725 125 DVGFISTADKLISKTVKKGEIYVFPKALVHF 155 (219)
Q Consensus 125 ~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~ 155 (219)
++++-++.++.++..|++|..+.--+|.++.
T Consensus 11 rVQlTD~Kgr~~Ti~L~~G~~fhThrG~i~H 41 (54)
T PF14801_consen 11 RVQLTDPKGRKHTITLEPGGEFHTHRGAIRH 41 (54)
T ss_dssp EEEEEETT--EEEEE--TT-EEEETTEEEEH
T ss_pred EEEEccCCCCeeeEEECCCCeEEcCccccch
Confidence 4677788888889999999999888877654
No 144
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=41.28 E-value=27 Score=23.19 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=17.1
Q ss_pred CHHHHHHHcCCCHHHHHHHHhhc
Q 027725 192 PDNVLTKAFQVGTKEIEKIKSKL 214 (219)
Q Consensus 192 ~~~vl~~af~~~~~~v~~l~~~~ 214 (219)
.+.-|.+.+|++++++++||+++
T Consensus 45 ~e~Yl~~~lgl~~~~i~~Lr~~l 67 (68)
T PF13348_consen 45 VENYLREELGLSEEDIERLRERL 67 (68)
T ss_dssp HHHHHHHT-T--HHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHc
Confidence 56788888999999999999875
No 145
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=41.21 E-value=61 Score=32.45 Aligned_cols=52 Identities=12% Similarity=0.137 Sum_probs=34.7
Q ss_pred EEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEE
Q 027725 94 LSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIY 146 (219)
Q Consensus 94 ~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~ 146 (219)
+....++||..+-..-.. ++++.+|++|++.+.......+.....+++||++
T Consensus 397 ~~~~~~~pge~I~~qge~-~~~lY~I~~G~V~i~~~~~~~e~~l~~l~~Gd~F 448 (823)
T PLN03192 397 MKAEYIPPREDVIMQNEA-PDDVYIVVSGEVEIIDSEGEKERVVGTLGCGDIF 448 (823)
T ss_pred hheeeeCCCCEEEECCCC-CceEEEEEecEEEEEEecCCcceeeEEccCCCEe
Confidence 444567888765433333 6889999999999864332223345678999987
No 146
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=39.21 E-value=82 Score=28.56 Aligned_cols=85 Identities=14% Similarity=0.185 Sum_probs=60.2
Q ss_pred CCCcEEEEecccCCCCCCccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCe-EEEEEEcCCCEE--E
Q 027725 71 SVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADK-LISKTVKKGEIY--V 147 (219)
Q Consensus 71 ~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~-~~~~~L~~GDv~--~ 147 (219)
..|..+..++... ++.-+.+.|++++..-+..-+...++.++-.++|...++.+.+++|+ .-...|++||-+ +
T Consensus 260 ~sG~~VlvVd~~G----~tR~~~VGRvKIE~RPLllIeA~~~g~~~svilQnaetIRlv~p~G~~vsVt~Lk~GD~vL~~ 335 (354)
T PF01959_consen 260 RSGDEVLVVDADG----RTRTAIVGRVKIERRPLLLIEAEADGKRISVILQNAETIRLVGPDGEPVSVTELKPGDEVLVY 335 (354)
T ss_pred cCCCEEEEEeCCC----CEEEEEeeEEEEeecceEEEEEEeCCeEEEEEEecCcEEEEECCCCCEeeeeecCCCCEEEEE
Confidence 3455555554322 12235688889988887655555568999999999999999999886 345789999954 5
Q ss_pred ECCCCeEEEEeC
Q 027725 148 FPKALVHFQKNN 159 (219)
Q Consensus 148 ~P~g~~H~~~N~ 159 (219)
++.+--|+-.-.
T Consensus 336 ~~~~~RHfG~~I 347 (354)
T PF01959_consen 336 LEEAGRHFGMKI 347 (354)
T ss_pred ecCCCcccceEe
Confidence 677777776544
No 147
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=38.76 E-value=46 Score=32.43 Aligned_cols=58 Identities=21% Similarity=0.353 Sum_probs=38.4
Q ss_pred eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEe
Q 027725 92 VSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKN 158 (219)
Q Consensus 92 is~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N 158 (219)
+.+......||.+. .|.-..-+-+.||++|++++.-.+ + ....|.+||++ |-..|-.|
T Consensus 569 m~f~~~H~APGDLl-YHtGESvDaLcFvVsGSLEVIQDD---E-VVAILGKGDVF----GD~FWK~~ 626 (971)
T KOG0501|consen 569 MEFQTNHCAPGDLL-YHTGESVDALCFVVSGSLEVIQDD---E-VVAILGKGDVF----GDEFWKEN 626 (971)
T ss_pred HHHHhccCCCccee-eecCCccceEEEEEecceEEeecC---c-EEEEeecCccc----hhHHhhhh
Confidence 33444455666543 455555678999999999987544 3 36789999997 44444444
No 148
>KOG4281 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.13 E-value=20 Score=30.19 Aligned_cols=84 Identities=18% Similarity=0.216 Sum_probs=53.1
Q ss_pred CccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEcc---C-----Ce---EEEEEEcC--------CCEEEE
Q 027725 88 NTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIST---A-----DK---LISKTVKK--------GEIYVF 148 (219)
Q Consensus 88 ~~~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~---~-----~~---~~~~~L~~--------GDv~~~ 148 (219)
++-++|+....++|++++|.|-||.=.-+.=++=|++.+-..+- + .. ++...|+. +-.+.-
T Consensus 71 EcD~FSigiFclp~ss~IPLHdHPgM~v~sKllyGtmhVksyDw~ePd~~~~~dp~q~~r~akl~~d~~~T~~s~~~~Ly 150 (236)
T KOG4281|consen 71 ECDRFSIGIFCLPPSSVIPLHDHPGMTVLSKLLYGTMHVKSYDWVEPDEPQTEDPHQPVRPAKLVSDKEFTAASPASTLY 150 (236)
T ss_pred ecCceeEEEEEcCCCCeeecCCCcchHHHHHhhhceeEeeeccccCCCCcccCCCCcceeeeeEeccceecCCCCCcEee
Confidence 34478899999999999999999965555557779888765431 1 11 11222222 223444
Q ss_pred CC--CCeEEEEeCCCCCEEEEEEecCC
Q 027725 149 PK--ALVHFQKNNGDKPASVISAFNSQ 173 (219)
Q Consensus 149 P~--g~~H~~~N~g~~~a~~l~~~~s~ 173 (219)
|+ |..|.+...+ ++.++-+++..
T Consensus 151 P~~ggn~h~f~a~t--~cAvlDILsPP 175 (236)
T KOG4281|consen 151 PKTGGNHHCFTAIT--PCAVLDILSPP 175 (236)
T ss_pred ecCCCcEeeeeecc--ceeEEeeccCC
Confidence 43 6677765543 77777777654
No 149
>PLN02288 mannose-6-phosphate isomerase
Probab=36.95 E-value=25 Score=32.29 Aligned_cols=21 Identities=14% Similarity=0.031 Sum_probs=19.2
Q ss_pred EEEEcCCCEEEECCCCeEEEE
Q 027725 137 SKTVKKGEIYVFPKALVHFQK 157 (219)
Q Consensus 137 ~~~L~~GDv~~~P~g~~H~~~ 157 (219)
...|++|+.+++|+|.+|...
T Consensus 252 ~v~L~PGeaifl~ag~~HAYl 272 (394)
T PLN02288 252 YVKLNPGEALYLGANEPHAYL 272 (394)
T ss_pred eEecCCCCEEEecCCCCceec
Confidence 578999999999999999874
No 150
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=35.86 E-value=1.2e+02 Score=23.60 Aligned_cols=53 Identities=23% Similarity=0.320 Sum_probs=32.7
Q ss_pred CCCCCCCCCcEEEEEEeeEEEEEEEc-cC-------------------C-eEEEEEEcCCCEEEECCCCeEEEE
Q 027725 105 NPPHTHPRATEMIFVLEGELDVGFIS-TA-------------------D-KLISKTVKKGEIYVFPKALVHFQK 157 (219)
Q Consensus 105 ~~pH~H~~a~E~~~Vl~G~~~v~~~~-~~-------------------~-~~~~~~L~~GDv~~~P~g~~H~~~ 157 (219)
..+-.|.+--.+-|+++|+=++++.. .. + ......|++|+.++|-++-+|.-.
T Consensus 61 ~~~E~HrkyiDiq~~l~G~E~i~~~~~~~~~~~~~~yd~~~D~~f~~~~~~~~~i~l~~g~f~iffP~d~H~p~ 134 (153)
T PF04074_consen 61 RRFESHRKYIDIQYVLEGEERIGWSADIEDLEVVQPYDEEKDIAFYEDGKNESFITLKPGDFAIFFPEDAHRPG 134 (153)
T ss_dssp S-EEE-SSEEEEEEEEES-EEEEEE-S---GGGS---BTTTTBEEES--TTEEEEEE-TTEEEEE-TT--EEEE
T ss_pred cceeeeccEEEEEeeccccEEEEEEcCcccCcccccCCCCCCEEEecCCCCceEEEEcCCEEEEECCCcccccc
Confidence 44556777789999999999998832 11 1 112457999999999999999954
No 151
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=35.75 E-value=42 Score=19.39 Aligned_cols=25 Identities=12% Similarity=0.251 Sum_probs=19.1
Q ss_pred CCHHHHHHHcCCCHHHHHHHHhhcC
Q 027725 191 VPDNVLTKAFQVGTKEIEKIKSKLA 215 (219)
Q Consensus 191 ~~~~vl~~af~~~~~~v~~l~~~~~ 215 (219)
++.+-+++.+|+..+++.++.++|.
T Consensus 3 mtr~diA~~lG~t~ETVSR~l~~l~ 27 (32)
T PF00325_consen 3 MTRQDIADYLGLTRETVSRILKKLE 27 (32)
T ss_dssp --HHHHHHHHTS-HHHHHHHHHHHH
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 6778899999999999999877764
No 152
>TIGR00022 uncharacterized protein, YhcH/YjgK/YiaL family. This family consists of conserved hypothetical proteins, about 150 amino acids in length. Members with limited information include YhcH, a possible sugar isomerase of sialic acid catabolism, and YjgK.
Probab=34.59 E-value=2.1e+02 Score=21.95 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=20.3
Q ss_pred cCCCCCCCCCcEEEEEEeeEEEEEEE
Q 027725 104 LNPPHTHPRATEMIFVLEGELDVGFI 129 (219)
Q Consensus 104 ~~~pH~H~~a~E~~~Vl~G~~~v~~~ 129 (219)
-..+-.|.+--.+-|+++|+=++++.
T Consensus 60 ~~~~E~Hr~YiDIq~~l~G~E~i~~~ 85 (142)
T TIGR00022 60 SKKAELHHRYLDIQLLLRGEENIEVG 85 (142)
T ss_pred hcchhhhhheEEEEEeecceEEEEEe
Confidence 34455666678999999999999885
No 153
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=32.66 E-value=84 Score=29.80 Aligned_cols=47 Identities=23% Similarity=0.340 Sum_probs=32.6
Q ss_pred EEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEE
Q 027725 97 IDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIY 146 (219)
Q Consensus 97 ~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~ 146 (219)
..+.||-.+---- .-+.|+.+|.+|.+.+ ++.+|...-.+|++|+++
T Consensus 333 qvfSPgDyICrKG-dvgkEMyIVk~G~L~V--v~dDg~t~~~~L~~G~~F 379 (536)
T KOG0500|consen 333 QVFSPGDYICRKG-DVGKEMYIVKEGKLAV--VADDGVTVFVTLKAGSVF 379 (536)
T ss_pred eeeCCCCeEEecC-cccceEEEEEccEEEE--EecCCcEEEEEecCCcee
Confidence 3455665443322 2389999999999977 445676567889999876
No 154
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=32.62 E-value=55 Score=19.95 Aligned_cols=26 Identities=8% Similarity=0.038 Sum_probs=19.0
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHhhcC
Q 027725 190 PVPDNVLTKAFQVGTKEIEKIKSKLA 215 (219)
Q Consensus 190 ~~~~~vl~~af~~~~~~v~~l~~~~~ 215 (219)
+.+..-+++.++++..+|.+..++|.
T Consensus 17 G~s~~~ia~~lgvs~~Tv~~w~kr~~ 42 (50)
T PF13384_consen 17 GWSIREIAKRLGVSRSTVYRWIKRYR 42 (50)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHT---
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHcc
Confidence 68899999999999999999998874
No 155
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=32.34 E-value=53 Score=26.69 Aligned_cols=33 Identities=18% Similarity=0.408 Sum_probs=22.0
Q ss_pred CcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECC
Q 027725 113 ATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPK 150 (219)
Q Consensus 113 a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~ 150 (219)
..-++|+++|++.+... ++ ...|.+||.+++-.
T Consensus 135 ~~~l~~~~~G~~~i~~~---~~--~~~L~~~d~l~~~~ 167 (184)
T PF05962_consen 135 STVLVYVLEGAWSITEG---GN--CISLSAGDLLLIDD 167 (184)
T ss_dssp SEEEEEESSS-EEECCC---EE--EEEE-TT-EEEEES
T ss_pred CEEEEEEeeCcEEEecC---CC--ceEcCCCCEEEEeC
Confidence 56778999998765422 12 68999999998876
No 156
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=28.39 E-value=2e+02 Score=22.21 Aligned_cols=65 Identities=15% Similarity=0.284 Sum_probs=43.1
Q ss_pred CCCCccceEEEEEEEcCCCcCCCCCCCCCcEEEEEE----eeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEe
Q 027725 85 PGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVL----EGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKN 158 (219)
Q Consensus 85 P~l~~~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl----~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N 158 (219)
|+++ .+.+.++.+++|...... +..|+...+ .|++.+++-++.+ ..+++||++-+-.|....+++
T Consensus 12 P~~k--N~~v~fIvl~~g~~tkTk---dg~~v~~~kVaD~TgsI~isvW~e~~----~~~~PGDIirLt~Gy~Si~qg 80 (134)
T KOG3416|consen 12 PGLK--NINVTFIVLEYGRATKTK---DGHEVRSCKVADETGSINISVWDEEG----CLIQPGDIIRLTGGYASIFQG 80 (134)
T ss_pred hhhh--cceEEEEEEeeceeeecc---CCCEEEEEEEecccceEEEEEecCcC----cccCCccEEEecccchhhhcC
Confidence 4444 456777888888765442 244544443 3667776666434 368999999999998877764
No 157
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=26.14 E-value=2.1e+02 Score=19.29 Aligned_cols=48 Identities=23% Similarity=0.185 Sum_probs=32.2
Q ss_pred EeeEEEEEEEccCC-eEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEE
Q 027725 120 LEGELDVGFISTAD-KLISKTVKKGEIYVFPKALVHFQKNNGDKPASVIS 168 (219)
Q Consensus 120 l~G~~~v~~~~~~~-~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~ 168 (219)
..|...+.+.+.+| .++...+++||..-+.....-.+ ..|.-.++-+.
T Consensus 5 a~~~sWv~V~d~dG~~~~~~~l~~G~~~~~~~~~~~~i-~iGna~~v~v~ 53 (77)
T PF13464_consen 5 ATGDSWVEVTDADGKVLFSGTLKAGETKTFEGKEPFRI-RIGNAGAVEVT 53 (77)
T ss_pred EeCCeEEEEEeCCCcEeeeeeeCCCcEEEEeCCCCEEE-EEeCCCcEEEE
Confidence 44777777775566 56788999999998855555443 45665555443
No 158
>PF01987 AIM24: Mitochondrial biogenesis AIM24; InterPro: IPR002838 The proteins in this family have no known function.; PDB: 1PG6_A 1YOX_D.
Probab=25.27 E-value=1.3e+02 Score=24.55 Aligned_cols=44 Identities=11% Similarity=0.057 Sum_probs=34.2
Q ss_pred cEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEEEe
Q 027725 114 TEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKN 158 (219)
Q Consensus 114 ~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N 158 (219)
.-+..-++|+..+.+.. .|..+..+|.+|+-+++.++.+-.+..
T Consensus 130 g~~~~~l~G~G~v~l~~-~G~i~~i~L~~ge~~~Vd~~~lVA~~~ 173 (215)
T PF01987_consen 130 GLFMLKLSGRGTVFLSG-YGAIYEIDLAPGEEIIVDPGHLVAWSG 173 (215)
T ss_dssp -EEEEEEESSCEEEEEE-CCSEEEEEEE-EEEEEEEGGGEEEEET
T ss_pred CcEEEEEEEEEEEEEEe-CCcEEEEEccCCceEEEcCCCEEEECC
Confidence 34556788999998876 677888999999999999988877754
No 159
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=23.55 E-value=30 Score=34.73 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=20.5
Q ss_pred EEEEcCCCEEEECCCCeEEEEeCCC
Q 027725 137 SKTVKKGEIYVFPKALVHFQKNNGD 161 (219)
Q Consensus 137 ~~~L~~GDv~~~P~g~~H~~~N~g~ 161 (219)
+..=.-||.++||+|.+|..+|.-.
T Consensus 800 tfvQ~LGdAVfIPAGaPHQVrNLkS 824 (889)
T KOG1356|consen 800 TFVQFLGDAVFIPAGAPHQVRNLKS 824 (889)
T ss_pred chhhcccceEEecCCCcHHhhhhhh
Confidence 3445779999999999999998643
No 160
>PF05777 Acp26Ab: Drosophila accessory gland-specific peptide 26Ab (Acp26Ab); InterPro: IPR008392 This family consists of accessory gland-specific 26Ab peptides or male accessory gland secretory protein 355B from different Drosophila species. Drosophila males, like males of most other insects, transfer a group of specific proteins (Acp26Ab and Acp26Aa in Drosophila) to the females during mating. These proteins are produced primarily in the accessory gland and are likely to influence the female's reproduction [].; GO: 0007617 mating behavior, 0005576 extracellular region
Probab=23.47 E-value=73 Score=22.56 Aligned_cols=25 Identities=32% Similarity=0.259 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHhhhccCCCCCcc
Q 027725 4 NLFSTYLLIFSIIAGVLAVDPDTLQD 29 (219)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~d 29 (219)
|-++ ++|||.|+|+-..+|.+|.--
T Consensus 2 nyf~-~l~if~cicl~~~sdAaP~is 26 (90)
T PF05777_consen 2 NYFV-VLCIFSCICLWQFSDAAPYIS 26 (90)
T ss_pred cchh-hHHHHHHHHHHHhccCCceEE
Confidence 3444 678999999976777777543
No 161
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=23.39 E-value=39 Score=34.41 Aligned_cols=61 Identities=21% Similarity=0.294 Sum_probs=44.4
Q ss_pred CCCCccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeE-EEEEEcCCCEE
Q 027725 85 PGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKL-ISKTVKKGEIY 146 (219)
Q Consensus 85 P~l~~~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~-~~~~L~~GDv~ 146 (219)
|.+..+..++-++.+.||...--.--. ++++.+|+.|+++...-...++. ...++.+||++
T Consensus 499 p~lr~~D~AldWv~l~~g~alyrqgD~-Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~i 560 (1158)
T KOG2968|consen 499 PFLRKLDFALDWVRLEPGQALYRQGDS-SDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLI 560 (1158)
T ss_pred HHHhhhhhhcceEEeccccHHHhcCCc-cCcEEEEecCeehhhhhccCccchhhhhccCccee
Confidence 445566778888999999887665444 89999999999987554333332 44567888887
No 162
>smart00153 VHP Villin headpiece domain.
Probab=22.84 E-value=93 Score=18.43 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=17.4
Q ss_pred CCHHHHHHHcCCCHHHHHHHH
Q 027725 191 VPDNVLTKAFQVGTKEIEKIK 211 (219)
Q Consensus 191 ~~~~vl~~af~~~~~~v~~l~ 211 (219)
++++-....|+++.++..+|.
T Consensus 2 LsdeeF~~vfgmsr~eF~~LP 22 (36)
T smart00153 2 LSDEDFEEVFGMTREEFYKLP 22 (36)
T ss_pred CCHHHHHHHHCCCHHHHHhCc
Confidence 567888899999999988764
No 163
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=22.45 E-value=93 Score=18.48 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=15.5
Q ss_pred CCHHHHHHHcCCCHHHHHHHH
Q 027725 191 VPDNVLTKAFQVGTKEIEKIK 211 (219)
Q Consensus 191 ~~~~vl~~af~~~~~~v~~l~ 211 (219)
++++--.+.|+++.++..+|.
T Consensus 2 Lsd~dF~~vFgm~~~eF~~lP 22 (36)
T PF02209_consen 2 LSDEDFEKVFGMSREEFYKLP 22 (36)
T ss_dssp S-HHHHHHHHSS-HHHHHHS-
T ss_pred cCHHHHHHHHCCCHHHHHHCh
Confidence 567888899999999988764
No 164
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=22.29 E-value=1.4e+02 Score=23.12 Aligned_cols=28 Identities=25% Similarity=0.482 Sum_probs=20.9
Q ss_pred EEEEEEcCCCEEEECCCCeEEEE-eCCCC
Q 027725 135 LISKTVKKGEIYVFPKALVHFQK-NNGDK 162 (219)
Q Consensus 135 ~~~~~L~~GDv~~~P~g~~H~~~-N~g~~ 162 (219)
.....+++||++++...++|.-. |.++.
T Consensus 179 ~~~~~~~~Gdvl~~~~~~~H~s~~N~s~~ 207 (211)
T PF05721_consen 179 WVPVPMKAGDVLFFHSRLIHGSGPNTSDD 207 (211)
T ss_dssp CEEE-BSTTEEEEEETTSEEEEE-B-SSS
T ss_pred eEEeecCCCeEEEEcCCccccCCCCCCcC
Confidence 34677999999999999999874 44443
No 165
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=22.28 E-value=2.1e+02 Score=28.10 Aligned_cols=51 Identities=20% Similarity=0.328 Sum_probs=38.5
Q ss_pred EEEEEEcCCCcCCCCCCCCCcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEE
Q 027725 94 LSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIY 146 (219)
Q Consensus 94 ~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~ 146 (219)
..-+.+-||.++------ +.|+.+|-.|.+.+ +++++|...-.+|++|.+|
T Consensus 550 LRsV~yLPgDfVCkKGei-GkEMYIIk~GqvQV-lGGp~~~~Vl~tL~~GsVF 600 (815)
T KOG0499|consen 550 LRSVLYLPGDFVCKKGEI-GKEMYIIKHGQVQV-LGGPDGTKVLVTLKAGSVF 600 (815)
T ss_pred hhceeecCCceeeecccc-cceeEEeecceEEE-ecCCCCCEEEEEeccccee
Confidence 344567788776554443 78999999999987 4677787777899999987
No 166
>PHA02699 hypothetical protein; Provisional
Probab=22.02 E-value=2.8e+02 Score=25.49 Aligned_cols=76 Identities=18% Similarity=0.281 Sum_probs=42.7
Q ss_pred EEEEEcCCCc-CCCCCCCC--CcEEEEEEeeEEEEEEEccCCeEEEEEEcCCCEEEECCCCeEEE-EeCCCCCEEEEEEe
Q 027725 95 SRIDYEAGGL-NPPHTHPR--ATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQ-KNNGDKPASVISAF 170 (219)
Q Consensus 95 ~~~~l~pg~~-~~pH~H~~--a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~-~N~g~~~a~~l~~~ 170 (219)
..++++-|-. ..-|+++. +--.+++++-++..++.-++-+...+.++.||++++|+-.--.+ -..|.+-..++..+
T Consensus 146 ~LVKLkHGN~fm~~~m~~~sagFvAtICIKNeGiSgI~Vp~T~~lktnmqeGD~IVsRSsRGI~FLPQIGGeAiYLIVsL 225 (466)
T PHA02699 146 QALKLKHDEWYMRHHMAPDMAAFVAIICIKNEGMAAIAVNNTKFLKTNIQEGDAIVFPAARGMFFLPHIGGDAEYIILTL 225 (466)
T ss_pred EEEEeeccchhhcccccCcccceEEEEEEcCCCeeEEEecCCcceeeeeecCCEEEEehhchhhhhhhcCCceEEEEEEE
Confidence 3455555542 22233433 44456677777766666544455688999999999998443332 23444433333333
No 167
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=21.00 E-value=2.7e+02 Score=23.48 Aligned_cols=23 Identities=13% Similarity=0.338 Sum_probs=20.4
Q ss_pred EEEEcCCCEEEECCCCeEEEEeC
Q 027725 137 SKTVKKGEIYVFPKALVHFQKNN 159 (219)
Q Consensus 137 ~~~L~~GDv~~~P~g~~H~~~N~ 159 (219)
...+++|+++++|...+|...-+
T Consensus 142 ~Vkp~aG~~vlfps~~lH~v~pV 164 (226)
T PRK05467 142 RVKLPAGDLVLYPSTSLHRVTPV 164 (226)
T ss_pred EEecCCCeEEEECCCCceeeeec
Confidence 67889999999999999998754
Done!