Query 027726
Match_columns 219
No_of_seqs 113 out of 1223
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 14:15:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027726.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027726hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0406 Glutathione S-transfer 100.0 1.9E-40 4.1E-45 248.0 22.2 215 3-217 8-227 (231)
2 PRK09481 sspA stringent starva 100.0 5E-39 1.1E-43 245.3 20.5 196 3-204 9-205 (211)
3 PLN02473 glutathione S-transfe 100.0 1.7E-35 3.7E-40 226.4 18.5 194 4-200 2-210 (214)
4 PRK15113 glutathione S-transfe 100.0 2E-35 4.4E-40 225.9 18.3 194 1-204 1-211 (214)
5 TIGR00862 O-ClC intracellular 100.0 3.2E-34 6.9E-39 219.7 21.4 197 11-216 17-235 (236)
6 PLN02395 glutathione S-transfe 100.0 2E-34 4.4E-39 220.6 18.9 193 5-201 3-210 (215)
7 PRK10542 glutathionine S-trans 100.0 1.5E-34 3.3E-39 219.1 16.2 190 5-202 1-198 (201)
8 PRK13972 GSH-dependent disulfi 100.0 3.2E-34 7E-39 219.5 18.2 188 5-202 2-206 (215)
9 PRK10357 putative glutathione 100.0 1.2E-33 2.5E-38 214.4 18.8 192 5-201 1-200 (202)
10 COG0625 Gst Glutathione S-tran 100.0 1.1E-33 2.4E-38 215.9 18.5 185 5-196 1-199 (211)
11 TIGR01262 maiA maleylacetoacet 100.0 1.9E-33 4.1E-38 214.5 18.2 190 6-202 1-205 (210)
12 PRK11752 putative S-transferas 100.0 3.5E-32 7.5E-37 213.7 18.2 196 3-203 43-260 (264)
13 PLN02817 glutathione dehydroge 100.0 8.5E-32 1.8E-36 210.5 19.9 190 11-212 71-262 (265)
14 PLN02378 glutathione S-transfe 100.0 7.3E-32 1.6E-36 205.9 19.1 187 10-208 17-206 (213)
15 KOG0868 Glutathione S-transfer 100.0 3.2E-32 6.9E-37 192.2 15.7 195 2-203 3-209 (217)
16 PTZ00057 glutathione s-transfe 100.0 3.3E-31 7.1E-36 201.3 16.0 191 1-203 1-201 (205)
17 KOG0867 Glutathione S-transfer 100.0 1.3E-30 2.9E-35 200.0 18.4 195 4-201 2-209 (226)
18 PRK10387 glutaredoxin 2; Provi 100.0 4E-30 8.6E-35 196.2 14.9 179 5-196 1-208 (210)
19 KOG4420 Uncharacterized conser 100.0 6.4E-29 1.4E-33 185.3 13.0 205 4-210 26-296 (325)
20 TIGR02182 GRXB Glutaredoxin, G 100.0 8.5E-28 1.9E-32 182.9 15.4 177 6-196 1-207 (209)
21 KOG1695 Glutathione S-transfer 99.9 5.3E-26 1.2E-30 169.3 14.8 194 1-203 1-202 (206)
22 KOG1422 Intracellular Cl- chan 99.9 1.5E-25 3.2E-30 162.8 15.0 195 12-215 20-219 (221)
23 PLN02907 glutamate-tRNA ligase 99.9 6.4E-23 1.4E-27 178.7 16.4 158 1-194 1-159 (722)
24 PF13417 GST_N_3: Glutathione 99.8 4.1E-20 8.8E-25 117.8 7.8 72 7-79 1-72 (75)
25 cd03061 GST_N_CLIC GST_N famil 99.8 2.6E-19 5.6E-24 116.6 8.0 68 11-79 20-87 (91)
26 cd03059 GST_N_SspA GST_N famil 99.8 4.6E-19 1E-23 112.4 8.4 73 5-78 1-73 (73)
27 cd03052 GST_N_GDAP1 GST_N fami 99.8 4.2E-19 9.2E-24 112.3 7.6 70 5-75 1-73 (73)
28 cd03058 GST_N_Tau GST_N family 99.8 7.9E-19 1.7E-23 111.6 8.4 73 5-78 1-74 (74)
29 cd03041 GST_N_2GST_N GST_N fam 99.8 9.5E-19 2.1E-23 112.0 7.6 74 4-78 1-77 (77)
30 cd03060 GST_N_Omega_like GST_N 99.8 2.5E-18 5.4E-23 108.4 7.8 69 5-74 1-70 (71)
31 cd03045 GST_N_Delta_Epsilon GS 99.8 3.4E-18 7.4E-23 108.7 7.8 71 5-76 1-74 (74)
32 cd03053 GST_N_Phi GST_N family 99.7 6.8E-18 1.5E-22 107.8 8.3 72 5-77 2-76 (76)
33 cd03055 GST_N_Omega GST_N fami 99.7 6.4E-18 1.4E-22 111.2 8.2 73 2-75 16-89 (89)
34 cd03050 GST_N_Theta GST_N fami 99.7 9.5E-18 2E-22 107.2 8.5 73 5-78 1-76 (76)
35 cd03185 GST_C_Tau GST_C family 99.7 1.9E-17 4.1E-22 116.1 10.8 122 90-211 2-125 (126)
36 cd03076 GST_N_Pi GST_N family, 99.7 3.8E-18 8.3E-23 108.0 6.5 72 4-76 1-72 (73)
37 COG0435 ECM4 Predicted glutath 99.7 4.5E-17 9.8E-22 123.3 12.4 198 3-202 50-287 (324)
38 cd03048 GST_N_Ure2p_like GST_N 99.7 1.5E-17 3.3E-22 107.6 8.4 74 4-79 1-80 (81)
39 KOG4244 Failed axon connection 99.7 7.2E-17 1.6E-21 121.8 13.1 174 5-191 46-272 (281)
40 cd03056 GST_N_4 GST_N family, 99.7 2.2E-17 4.8E-22 104.5 7.7 70 5-75 1-73 (73)
41 cd03039 GST_N_Sigma_like GST_N 99.7 1.1E-17 2.3E-22 105.8 6.1 71 5-76 1-72 (72)
42 KOG3029 Glutathione S-transfer 99.7 1.1E-16 2.3E-21 121.5 12.3 182 4-191 90-354 (370)
43 cd03049 GST_N_3 GST_N family, 99.7 2.2E-17 4.7E-22 104.6 7.2 70 5-75 1-73 (73)
44 cd03044 GST_N_EF1Bgamma GST_N 99.7 2.8E-17 6E-22 104.7 7.6 70 6-76 2-74 (75)
45 cd03037 GST_N_GRX2 GST_N famil 99.7 2.9E-17 6.2E-22 103.5 7.2 70 5-76 1-71 (71)
46 cd03047 GST_N_2 GST_N family, 99.7 3.8E-17 8.1E-22 103.5 7.5 70 5-75 1-73 (73)
47 cd03051 GST_N_GTT2_like GST_N 99.7 3.7E-17 8E-22 103.8 7.1 70 5-75 1-74 (74)
48 cd03046 GST_N_GTT1_like GST_N 99.7 6.7E-17 1.5E-21 103.2 8.2 73 5-79 1-76 (76)
49 cd03057 GST_N_Beta GST_N famil 99.7 8.1E-17 1.7E-21 103.1 8.1 73 5-79 1-77 (77)
50 cd03042 GST_N_Zeta GST_N famil 99.7 6.9E-17 1.5E-21 102.3 7.6 70 5-75 1-73 (73)
51 cd03040 GST_N_mPGES2 GST_N fam 99.7 6.8E-17 1.5E-21 103.4 7.2 72 4-78 1-76 (77)
52 COG2999 GrxB Glutaredoxin 2 [P 99.7 3.4E-16 7.5E-21 111.1 11.3 178 5-195 1-207 (215)
53 cd03190 GST_C_ECM4_like GST_C 99.7 2.2E-16 4.8E-21 112.9 10.0 125 90-214 3-131 (142)
54 cd03186 GST_C_SspA GST_N famil 99.7 2.8E-16 6.1E-21 107.0 9.8 105 90-198 2-106 (107)
55 PF13409 GST_N_2: Glutathione 99.7 1.2E-16 2.6E-21 100.3 7.0 65 12-77 1-70 (70)
56 cd03080 GST_N_Metaxin_like GST 99.7 1.8E-16 3.9E-21 100.9 7.9 67 5-79 2-75 (75)
57 cd03077 GST_N_Alpha GST_N fami 99.7 5E-16 1.1E-20 99.8 8.2 72 4-79 1-77 (79)
58 cd03075 GST_N_Mu GST_N family, 99.7 4E-16 8.6E-21 100.9 7.3 73 5-78 1-82 (82)
59 cd03196 GST_C_5 GST_C family, 99.7 1.1E-15 2.3E-20 105.4 9.6 110 88-199 3-115 (115)
60 cd03184 GST_C_Omega GST_C fami 99.6 1E-15 2.2E-20 107.1 9.2 118 91-210 2-122 (124)
61 KOG2903 Predicted glutathione 99.6 2.2E-15 4.8E-20 113.2 11.0 198 3-203 36-290 (319)
62 cd03198 GST_C_CLIC GST_C famil 99.6 2E-15 4.3E-20 105.7 9.4 106 104-209 9-132 (134)
63 cd03038 GST_N_etherase_LigE GS 99.6 1E-15 2.2E-20 99.6 7.2 67 11-79 14-84 (84)
64 cd03188 GST_C_Beta GST_C famil 99.6 5.4E-15 1.2E-19 101.6 9.5 104 91-199 2-114 (114)
65 cd03043 GST_N_1 GST_N family, 99.6 4.2E-15 9.1E-20 94.0 8.0 66 9-75 6-73 (73)
66 PF02798 GST_N: Glutathione S- 99.6 4.6E-15 9.9E-20 94.6 8.1 71 6-76 2-76 (76)
67 cd00570 GST_N_family Glutathio 99.6 4.3E-15 9.3E-20 92.8 7.5 70 5-75 1-71 (71)
68 cd03203 GST_C_Lambda GST_C fam 99.6 1E-14 2.2E-19 101.3 9.6 114 88-209 1-119 (120)
69 cd03201 GST_C_DHAR GST_C famil 99.6 1.9E-14 4.1E-19 100.0 9.8 103 106-209 14-118 (121)
70 cd03054 GST_N_Metaxin GST_N fa 99.6 1.1E-14 2.4E-19 91.9 7.1 65 5-77 1-72 (72)
71 cd03191 GST_C_Zeta GST_C famil 99.6 2.1E-14 4.6E-19 99.9 9.2 108 90-202 2-120 (121)
72 cd03187 GST_C_Phi GST_C family 99.6 2.5E-14 5.4E-19 99.0 9.2 106 91-199 2-118 (118)
73 cd03178 GST_C_Ure2p_like GST_C 99.6 2E-14 4.2E-19 98.8 7.9 104 92-199 2-112 (113)
74 cd03182 GST_C_GTT2_like GST_C 99.6 5.3E-14 1.1E-18 97.2 10.0 104 88-195 1-117 (117)
75 cd03189 GST_C_GTT1_like GST_C 99.5 8E-14 1.7E-18 96.6 9.5 103 86-193 2-119 (119)
76 cd03209 GST_C_Mu GST_C family, 99.5 9.3E-14 2E-18 96.7 9.0 110 91-204 2-112 (121)
77 cd03181 GST_C_EFB1gamma GST_C 99.5 6.5E-14 1.4E-18 97.6 7.7 111 92-204 2-119 (123)
78 cd03177 GST_C_Delta_Epsilon GS 99.5 8.5E-14 1.9E-18 96.4 8.1 105 91-199 2-110 (118)
79 KOG3027 Mitochondrial outer me 99.5 1.6E-12 3.4E-17 94.7 13.0 169 13-192 34-248 (257)
80 cd03210 GST_C_Pi GST_C family, 99.5 2.2E-13 4.8E-18 95.5 8.2 109 91-203 3-114 (126)
81 cd03180 GST_C_2 GST_C family, 99.5 4.6E-13 1E-17 91.3 9.5 100 91-195 2-110 (110)
82 cd03207 GST_C_8 GST_C family, 99.5 1.1E-13 2.4E-18 93.4 6.0 77 119-201 26-102 (103)
83 cd03183 GST_C_Theta GST_C fami 99.5 2E-13 4.3E-18 95.7 7.3 104 92-199 2-120 (126)
84 cd03208 GST_C_Alpha GST_C fami 99.4 5.5E-13 1.2E-17 94.7 8.9 109 91-203 3-117 (137)
85 cd03195 GST_C_4 GST_C family, 99.4 4.7E-13 1E-17 92.1 8.1 103 90-200 2-112 (114)
86 cd03200 GST_C_JTV1 GST_C famil 99.4 6.4E-13 1.4E-17 88.5 8.0 95 71-191 1-95 (96)
87 cd03206 GST_C_7 GST_C family, 99.4 1.5E-12 3.2E-17 87.5 7.4 94 97-195 3-100 (100)
88 PF13410 GST_C_2: Glutathione 99.4 1.8E-12 3.8E-17 81.0 6.9 68 119-188 2-69 (69)
89 PF00043 GST_C: Glutathione S- 99.4 1.9E-12 4E-17 86.1 7.2 71 119-193 24-95 (95)
90 cd03204 GST_C_GDAP1 GST_C fami 99.4 2.9E-12 6.4E-17 87.0 7.7 77 118-195 24-111 (111)
91 cd03179 GST_C_1 GST_C family, 99.3 9.1E-12 2E-16 84.2 8.9 95 91-190 2-105 (105)
92 cd03079 GST_N_Metaxin2 GST_N f 99.3 5E-12 1.1E-16 79.2 6.6 59 12-77 16-74 (74)
93 cd00299 GST_C_family Glutathio 99.3 2.1E-11 4.5E-16 81.4 7.7 92 96-189 2-100 (100)
94 PF14497 GST_C_3: Glutathione 99.3 1.1E-11 2.4E-16 83.1 5.6 95 89-191 3-99 (99)
95 cd03194 GST_C_3 GST_C family, 99.2 6.3E-11 1.4E-15 81.5 8.0 72 121-200 39-113 (114)
96 KOG3028 Translocase of outer m 99.2 1.2E-09 2.6E-14 85.1 15.3 169 13-191 17-233 (313)
97 cd03202 GST_C_etherase_LigE GS 99.2 7.3E-11 1.6E-15 82.4 7.7 69 121-192 56-124 (124)
98 TIGR02190 GlrX-dom Glutaredoxi 99.2 7.6E-11 1.6E-15 75.6 7.0 72 3-75 8-79 (79)
99 cd03192 GST_C_Sigma_like GST_C 99.2 8.1E-11 1.8E-15 79.5 7.4 96 91-189 2-104 (104)
100 PRK10638 glutaredoxin 3; Provi 99.2 1.6E-10 3.4E-15 74.8 7.4 73 1-75 1-74 (83)
101 cd03078 GST_N_Metaxin1_like GS 99.1 3.7E-10 8E-15 71.0 7.2 57 13-77 16-72 (73)
102 cd03193 GST_C_Metaxin GST_C fa 99.1 1.7E-10 3.8E-15 75.5 5.7 67 123-190 19-88 (88)
103 cd03029 GRX_hybridPRX5 Glutare 99.1 7.6E-10 1.7E-14 69.6 7.5 71 4-75 2-72 (72)
104 cd03205 GST_C_6 GST_C family, 98.9 4.7E-09 1E-13 70.1 6.9 67 118-189 32-98 (98)
105 PF14834 GST_C_4: Glutathione 98.9 1.3E-08 2.9E-13 67.9 8.5 104 88-199 1-112 (117)
106 cd03211 GST_C_Metaxin2 GST_C f 98.9 3E-09 6.5E-14 74.4 5.5 72 119-190 53-126 (126)
107 cd03027 GRX_DEP Glutaredoxin ( 98.9 1.1E-08 2.3E-13 64.5 6.5 69 3-72 1-70 (73)
108 PRK10329 glutaredoxin-like pro 98.8 1.2E-08 2.5E-13 65.6 6.0 62 4-66 2-63 (81)
109 cd03212 GST_C_Metaxin1_3 GST_C 98.8 9.5E-09 2.1E-13 72.8 5.6 72 119-191 60-134 (137)
110 TIGR02196 GlrX_YruB Glutaredox 98.8 2.1E-08 4.7E-13 62.8 6.3 70 4-74 1-73 (74)
111 cd03197 GST_C_mPGES2 GST_C fam 98.8 2.5E-08 5.5E-13 70.7 6.8 66 122-191 78-145 (149)
112 cd02066 GRX_family Glutaredoxi 98.8 3.3E-08 7.1E-13 61.6 6.6 69 4-73 1-70 (72)
113 cd02976 NrdH NrdH-redoxin (Nrd 98.7 3.8E-08 8.1E-13 61.6 5.7 63 4-67 1-64 (73)
114 cd03418 GRX_GRXb_1_3_like Glut 98.7 1.1E-07 2.5E-12 60.0 6.7 71 4-75 1-73 (75)
115 TIGR02200 GlrX_actino Glutared 98.6 1.2E-07 2.6E-12 60.1 6.2 70 4-74 1-75 (77)
116 COG0695 GrxC Glutaredoxin and 98.6 3.4E-07 7.3E-12 58.6 6.9 69 4-73 2-73 (80)
117 TIGR02181 GRX_bact Glutaredoxi 98.5 3.1E-07 6.8E-12 58.6 6.4 71 5-76 1-72 (79)
118 TIGR02194 GlrX_NrdH Glutaredox 98.5 2.3E-07 4.9E-12 58.2 5.4 57 5-62 1-57 (72)
119 PF00462 Glutaredoxin: Glutare 98.4 3.3E-07 7.2E-12 55.3 4.0 59 5-64 1-60 (60)
120 cd03419 GRX_GRXh_1_2_like Glut 98.4 2.1E-06 4.6E-11 55.0 7.7 72 4-76 1-76 (82)
121 TIGR02189 GlrX-like_plant Glut 98.4 2.4E-06 5.3E-11 57.0 8.2 70 3-73 8-81 (99)
122 PRK11200 grxA glutaredoxin 1; 98.3 4.2E-06 9E-11 54.2 7.2 75 4-79 2-84 (85)
123 PHA03050 glutaredoxin; Provisi 98.3 7.4E-06 1.6E-10 55.5 7.9 69 3-72 13-88 (108)
124 TIGR02183 GRXA Glutaredoxin, G 98.1 1.5E-05 3.2E-10 51.7 7.2 74 5-79 2-83 (86)
125 TIGR02180 GRX_euk Glutaredoxin 98.1 2.1E-05 4.5E-10 50.5 7.7 71 5-76 1-77 (84)
126 TIGR00365 monothiol glutaredox 98.1 2E-05 4.3E-10 52.3 6.9 71 3-74 12-88 (97)
127 cd03028 GRX_PICOT_like Glutare 98.0 3.1E-05 6.8E-10 50.7 7.0 71 3-74 8-84 (90)
128 PF10568 Tom37: Outer mitochon 98.0 3E-05 6.5E-10 48.3 6.3 55 12-74 13-71 (72)
129 PRK12759 bifunctional gluaredo 97.7 0.00013 2.8E-09 61.2 7.5 70 1-72 1-79 (410)
130 KOG1147 Glutamyl-tRNA syntheta 97.5 7.4E-05 1.6E-09 62.8 2.8 117 60-197 44-160 (712)
131 PF04399 Glutaredoxin2_C: Glut 97.4 0.00064 1.4E-08 47.5 6.5 68 121-195 57-124 (132)
132 cd03031 GRX_GRX_like Glutaredo 97.4 0.0008 1.7E-08 48.1 6.8 69 4-73 1-80 (147)
133 PRK10824 glutaredoxin-4; Provi 97.4 0.0011 2.3E-08 45.3 6.8 71 3-74 15-91 (115)
134 KOG1752 Glutaredoxin and relat 97.2 0.0019 4.2E-08 43.2 6.8 72 3-75 14-89 (104)
135 cd03199 GST_C_GRX2 GST_C famil 97.1 0.0024 5.3E-08 44.3 6.8 67 122-195 59-125 (128)
136 COG4545 Glutaredoxin-related p 97.0 0.0035 7.5E-08 38.6 5.4 63 1-65 1-77 (85)
137 PTZ00062 glutaredoxin; Provisi 96.9 0.004 8.7E-08 47.0 6.8 70 3-73 113-188 (204)
138 cd02973 TRX_GRX_like Thioredox 96.8 0.0049 1.1E-07 37.5 5.6 58 4-65 2-64 (67)
139 cd03036 ArsC_like Arsenate Red 96.8 0.0015 3.2E-08 44.5 3.4 34 5-38 1-34 (111)
140 cd02977 ArsC_family Arsenate R 96.8 0.0018 3.9E-08 43.6 3.6 33 5-37 1-33 (105)
141 PRK01655 spxA transcriptional 96.8 0.002 4.4E-08 45.2 4.0 32 5-36 2-33 (131)
142 cd03032 ArsC_Spx Arsenate Redu 96.6 0.0028 6.1E-08 43.4 3.9 32 5-36 2-33 (115)
143 PF05768 DUF836: Glutaredoxin- 96.4 0.016 3.5E-07 36.9 6.1 55 4-61 1-57 (81)
144 PRK10026 arsenate reductase; P 96.3 0.0057 1.2E-07 43.3 4.0 35 1-36 1-35 (141)
145 PRK13344 spxA transcriptional 96.3 0.008 1.7E-07 42.2 4.7 33 5-37 2-34 (132)
146 TIGR01617 arsC_related transcr 96.3 0.0052 1.1E-07 42.2 3.6 32 5-36 1-32 (117)
147 PRK12559 transcriptional regul 96.3 0.0078 1.7E-07 42.2 4.4 33 5-37 2-34 (131)
148 cd03033 ArsC_15kD Arsenate Red 95.9 0.013 2.8E-07 40.0 3.8 33 4-36 1-33 (113)
149 cd03035 ArsC_Yffb Arsenate Red 95.8 0.012 2.6E-07 39.6 3.5 32 5-36 1-32 (105)
150 COG1393 ArsC Arsenate reductas 95.7 0.016 3.4E-07 39.8 3.8 33 4-36 2-34 (117)
151 PRK10853 putative reductase; P 95.2 0.029 6.3E-07 38.6 3.8 32 5-36 2-33 (118)
152 TIGR00412 redox_disulf_2 small 95.2 0.11 2.4E-06 32.5 6.0 56 4-65 2-61 (76)
153 TIGR00411 redox_disulf_1 small 95.1 0.19 4E-06 31.6 7.1 57 4-62 2-62 (82)
154 TIGR01616 nitro_assoc nitrogen 95.0 0.038 8.2E-07 38.4 3.9 33 4-36 2-34 (126)
155 cd03034 ArsC_ArsC Arsenate Red 94.4 0.055 1.2E-06 36.8 3.5 32 5-36 1-32 (112)
156 COG0278 Glutaredoxin-related p 94.4 0.16 3.4E-06 33.4 5.2 65 10-75 27-93 (105)
157 TIGR00014 arsC arsenate reduct 94.2 0.068 1.5E-06 36.5 3.5 32 5-36 1-32 (114)
158 cd01659 TRX_superfamily Thiore 94.0 0.12 2.6E-06 29.8 4.2 54 5-59 1-59 (69)
159 cd03030 GRX_SH3BGR Glutaredoxi 93.8 0.39 8.5E-06 31.4 6.4 67 5-72 2-79 (92)
160 PHA02125 thioredoxin-like prot 93.8 0.23 5.1E-06 30.9 5.2 51 5-59 2-52 (75)
161 PF04908 SH3BGR: SH3-binding, 93.0 0.42 9.2E-06 31.7 5.6 68 5-73 3-86 (99)
162 cd03026 AhpF_NTD_C TRX-GRX-lik 92.8 0.42 9.1E-06 31.0 5.4 58 4-65 15-77 (89)
163 PF11287 DUF3088: Protein of u 92.4 0.57 1.2E-05 31.6 5.6 68 12-79 23-108 (112)
164 PF11801 Tom37_C: Tom37 C-term 90.5 0.64 1.4E-05 34.1 4.8 39 127-165 112-154 (168)
165 PF13192 Thioredoxin_3: Thiore 90.4 1.2 2.7E-05 27.7 5.5 57 4-66 2-62 (76)
166 PF03960 ArsC: ArsC family; I 86.7 0.74 1.6E-05 31.0 2.8 29 8-36 1-29 (110)
167 KOG0911 Glutaredoxin-related p 82.2 3.4 7.3E-05 31.6 4.7 65 10-75 151-216 (227)
168 PF00085 Thioredoxin: Thioredo 81.8 11 0.00024 24.2 7.9 69 5-76 21-102 (103)
169 PF09635 MetRS-N: MetRS-N bind 81.1 2.8 6.1E-05 28.8 3.7 50 16-79 12-63 (122)
170 TIGR01295 PedC_BrcD bacterioci 77.2 12 0.00026 25.7 6.0 32 5-36 27-62 (122)
171 COG3019 Predicted metal-bindin 77.0 7.5 0.00016 27.4 4.8 76 3-78 26-104 (149)
172 cd02947 TRX_family TRX family; 72.7 19 0.00042 22.1 6.1 54 5-62 14-74 (93)
173 cd02953 DsbDgamma DsbD gamma f 71.3 14 0.0003 24.1 5.0 52 5-58 15-77 (104)
174 KOG1668 Elongation factor 1 be 71.0 3.7 8E-05 31.5 2.3 58 129-195 10-67 (231)
175 cd02949 TRX_NTR TRX domain, no 70.1 23 0.00049 22.8 5.8 58 5-64 17-80 (97)
176 cd02984 TRX_PICOT TRX domain, 70.0 25 0.00055 22.3 6.2 57 5-63 18-80 (97)
177 cd02963 TRX_DnaJ TRX domain, D 69.6 30 0.00065 23.0 6.9 57 5-63 28-91 (111)
178 PF09849 DUF2076: Uncharacteri 69.4 37 0.00081 26.6 7.6 66 67-139 6-71 (247)
179 TIGR03143 AhpF_homolog putativ 68.5 13 0.00029 32.8 5.6 57 4-65 479-541 (555)
180 TIGR02187 GlrX_arch Glutaredox 64.4 29 0.00063 26.3 6.2 54 4-59 136-192 (215)
181 PRK09381 trxA thioredoxin; Pro 64.2 38 0.00082 22.2 7.9 58 5-64 25-88 (109)
182 cd02975 PfPDO_like_N Pyrococcu 63.8 22 0.00048 23.9 4.9 52 5-58 25-80 (113)
183 cd02989 Phd_like_TxnDC9 Phosdu 61.6 46 0.001 22.3 6.2 57 5-65 26-89 (113)
184 PHA03075 glutaredoxin-like pro 59.9 17 0.00037 24.8 3.6 70 1-78 1-70 (123)
185 cd02951 SoxW SoxW family; SoxW 59.3 33 0.00071 23.2 5.2 16 5-20 18-33 (125)
186 PRK15317 alkyl hydroperoxide r 58.2 13 0.00027 32.5 3.6 72 4-77 119-197 (517)
187 PF04134 DUF393: Protein of un 58.0 36 0.00078 22.7 5.2 69 7-77 1-77 (114)
188 TIGR03140 AhpF alkyl hydropero 56.4 12 0.00027 32.5 3.3 72 4-77 120-198 (515)
189 TIGR01068 thioredoxin thioredo 52.8 56 0.0012 20.6 7.5 56 5-62 18-79 (101)
190 PRK10996 thioredoxin 2; Provis 52.2 79 0.0017 22.1 7.9 58 5-64 56-119 (139)
191 PTZ00051 thioredoxin; Provisio 50.2 64 0.0014 20.5 5.5 57 5-63 22-83 (98)
192 cd03003 PDI_a_ERdj5_N PDIa fam 49.8 68 0.0015 20.6 5.4 55 5-62 22-83 (101)
193 COG3011 Predicted thiol-disulf 48.1 97 0.0021 21.9 6.6 76 3-78 8-87 (137)
194 PF01323 DSBA: DSBA-like thior 46.2 32 0.00069 25.1 3.7 36 4-39 1-41 (193)
195 cd02959 ERp19 Endoplasmic reti 46.0 92 0.002 21.0 5.7 59 5-64 23-90 (117)
196 PHA02278 thioredoxin-like prot 45.7 87 0.0019 20.7 6.4 58 5-64 18-85 (103)
197 KOG2824 Glutaredoxin-related p 44.7 35 0.00076 27.1 3.7 58 15-73 149-211 (281)
198 cd02962 TMX2 TMX2 family; comp 44.7 1E+02 0.0022 22.1 5.9 60 5-65 51-122 (152)
199 cd02993 PDI_a_APS_reductase PD 42.0 99 0.0021 20.3 5.5 54 4-58 24-83 (109)
200 TIGR02187 GlrX_arch Glutaredox 41.8 92 0.002 23.6 5.7 52 5-58 23-82 (215)
201 cd02956 ybbN ybbN protein fami 39.5 98 0.0021 19.5 6.1 57 5-63 16-78 (96)
202 PF10673 DUF2487: Protein of u 39.4 40 0.00087 24.0 3.1 48 99-146 8-55 (142)
203 cd02957 Phd_like Phosducin (Ph 38.7 83 0.0018 20.9 4.5 57 5-66 28-91 (113)
204 TIGR02681 phage_pRha phage reg 38.6 32 0.0007 23.1 2.4 26 54-79 2-28 (108)
205 cd03004 PDI_a_ERdj5_C PDIa fam 38.0 1.1E+02 0.0024 19.6 5.9 52 5-58 23-78 (104)
206 cd02948 TRX_NDPK TRX domain, T 37.1 1.2E+02 0.0025 19.7 6.1 56 5-63 21-83 (102)
207 PF13728 TraF: F plasmid trans 36.5 1.1E+02 0.0024 23.4 5.3 52 5-58 124-188 (215)
208 PF13098 Thioredoxin_2: Thiore 36.4 41 0.00088 22.1 2.7 21 4-24 8-28 (112)
209 cd03020 DsbA_DsbC_DsbG DsbA fa 35.9 43 0.00094 24.9 3.0 22 4-25 80-101 (197)
210 cd02997 PDI_a_PDIR PDIa family 35.2 1.2E+02 0.0026 19.2 6.0 52 5-58 21-80 (104)
211 PRK10877 protein disulfide iso 34.7 31 0.00067 26.7 2.1 22 4-25 110-131 (232)
212 cd03021 DsbA_GSTK DsbA family, 34.7 53 0.0012 24.7 3.4 34 4-37 2-39 (209)
213 PF15608 PELOTA_1: PELOTA RNA 34.6 60 0.0013 21.6 3.1 29 5-33 58-86 (100)
214 KOG0912 Thiol-disulfide isomer 34.3 2.6E+02 0.0055 23.0 7.0 71 8-79 20-107 (375)
215 PF09413 DUF2007: Domain of un 34.3 42 0.00091 19.9 2.3 31 6-36 2-32 (67)
216 PF06110 DUF953: Eukaryotic pr 33.7 47 0.001 22.8 2.6 59 10-69 35-107 (119)
217 PRK03731 aroL shikimate kinase 32.8 66 0.0014 23.1 3.5 31 1-31 1-31 (171)
218 PF11417 Inhibitor_G39P: Loade 32.6 1.2E+02 0.0027 18.6 4.5 37 66-105 5-43 (71)
219 cd02994 PDI_a_TMX PDIa family, 32.5 1.4E+02 0.0029 19.1 5.2 52 5-58 20-76 (101)
220 PTZ00102 disulphide isomerase; 32.2 2.5E+02 0.0053 24.0 7.4 72 5-79 53-139 (477)
221 PRK15371 effector protein YopJ 31.3 1.7E+02 0.0037 23.5 5.7 65 123-190 23-87 (287)
222 PRK14531 adenylate kinase; Pro 30.8 73 0.0016 23.3 3.5 30 1-30 1-30 (183)
223 PF09314 DUF1972: Domain of un 30.5 38 0.00082 25.3 1.9 27 60-86 154-181 (185)
224 cd02954 DIM1 Dim1 family; Dim1 30.4 1.6E+02 0.0036 20.0 4.8 57 5-64 18-81 (114)
225 cd04911 ACT_AKiii-YclM-BS_1 AC 29.8 55 0.0012 20.5 2.2 23 13-35 15-37 (76)
226 PRK11657 dsbG disulfide isomer 29.6 53 0.0012 25.7 2.7 21 4-24 120-140 (251)
227 PF07728 AAA_5: AAA domain (dy 29.1 1.1E+02 0.0024 20.9 4.1 40 5-44 2-41 (139)
228 COG3118 Thioredoxin domain-con 28.8 2.1E+02 0.0045 23.2 5.7 73 5-79 47-131 (304)
229 KOG3425 Uncharacterized conser 28.8 2E+02 0.0044 19.9 5.0 68 10-77 42-122 (128)
230 cd02985 TRX_CDSP32 TRX family, 28.7 1.7E+02 0.0036 19.0 5.7 59 5-64 19-84 (103)
231 cd03005 PDI_a_ERp46 PDIa famil 28.1 1.6E+02 0.0035 18.6 5.7 56 5-62 20-84 (102)
232 cd02952 TRP14_like Human TRX-r 27.7 2E+02 0.0044 19.6 6.1 56 11-67 38-106 (119)
233 PRK09266 hypothetical protein; 27.5 95 0.0021 24.4 3.8 58 22-79 200-259 (266)
234 COG0703 AroK Shikimate kinase 27.2 1E+02 0.0022 22.7 3.6 30 2-31 2-31 (172)
235 PRK13949 shikimate kinase; Pro 27.0 95 0.0021 22.5 3.5 30 1-31 1-30 (169)
236 cd02970 PRX_like2 Peroxiredoxi 26.8 1.1E+02 0.0023 21.1 3.7 52 9-62 32-90 (149)
237 COG5515 Uncharacterized conser 26.7 57 0.0012 19.4 1.7 22 4-25 2-27 (70)
238 PTZ00443 Thioredoxin domain-co 26.7 3E+02 0.0065 21.2 7.7 72 5-79 56-140 (224)
239 cd02972 DsbA_family DsbA famil 26.4 68 0.0015 19.8 2.4 22 5-26 1-22 (98)
240 TIGR01126 pdi_dom protein disu 25.9 92 0.002 19.6 3.0 53 4-58 16-74 (102)
241 cd02955 SSP411 TRX domain, SSP 25.9 2.3E+02 0.0049 19.5 5.9 61 6-67 20-97 (124)
242 TIGR01764 excise DNA binding d 25.9 1.1E+02 0.0024 16.2 2.9 24 52-75 25-48 (49)
243 cd02996 PDI_a_ERp44 PDIa famil 25.7 1.9E+02 0.0041 18.7 4.5 56 5-62 22-89 (108)
244 cd03000 PDI_a_TMX3 PDIa family 25.6 1.9E+02 0.0042 18.6 5.2 51 5-58 19-77 (104)
245 PRK13947 shikimate kinase; Pro 25.0 1.1E+02 0.0023 21.9 3.4 29 1-30 1-29 (171)
246 KOG2501 Thioredoxin, nucleored 24.6 1.9E+02 0.0041 21.0 4.4 34 6-39 37-78 (157)
247 cd02950 TxlA TRX-like protein 24.6 2.5E+02 0.0054 19.6 6.1 58 5-64 24-90 (142)
248 cd02987 Phd_like_Phd Phosducin 24.1 2.9E+02 0.0064 20.2 6.2 58 5-66 87-150 (175)
249 PF04564 U-box: U-box domain; 24.0 1.8E+02 0.0039 17.7 4.3 24 53-77 15-38 (73)
250 PF03421 YopJ: YopJ Serine/Thr 23.8 2.5E+02 0.0055 20.7 5.2 72 126-200 2-77 (177)
251 PRK06217 hypothetical protein; 23.8 1.1E+02 0.0023 22.4 3.3 29 1-30 1-29 (183)
252 TIGR03759 conj_TIGR03759 integ 23.6 2.3E+02 0.005 21.5 4.9 44 14-58 146-192 (200)
253 PRK08118 topology modulation p 23.4 1.2E+02 0.0027 21.9 3.5 30 1-31 1-30 (167)
254 PF05496 RuvB_N: Holliday junc 23.1 2E+02 0.0043 22.4 4.6 32 4-35 52-83 (233)
255 TIGR01130 ER_PDI_fam protein d 23.1 3.9E+02 0.0085 22.5 7.0 73 5-79 22-110 (462)
256 COG3150 Predicted esterase [Ge 22.8 1.1E+02 0.0023 22.7 2.9 33 5-37 3-35 (191)
257 PRK14530 adenylate kinase; Pro 22.7 1.2E+02 0.0025 22.9 3.4 28 3-30 4-31 (215)
258 KOG0079 GTP-binding protein H- 22.6 92 0.002 22.5 2.5 43 177-219 94-145 (198)
259 PF00004 AAA: ATPase family as 22.4 1.4E+02 0.0031 19.8 3.6 28 5-32 1-28 (132)
260 cd03002 PDI_a_MPD1_like PDI fa 21.3 2.4E+02 0.0051 18.1 5.6 54 4-58 21-79 (109)
261 cd03006 PDI_a_EFP1_N PDIa fami 20.7 2E+02 0.0044 19.3 3.9 51 5-58 33-89 (113)
262 cd02961 PDI_a_family Protein D 20.7 2.2E+02 0.0047 17.5 5.2 53 4-58 18-76 (101)
263 cd02965 HyaE HyaE family; HyaE 20.6 2.6E+02 0.0057 18.9 4.3 60 5-66 31-98 (111)
264 COG4837 Uncharacterized protei 20.5 2.6E+02 0.0057 18.3 4.8 44 24-68 39-89 (106)
265 PF07862 Nif11: Nitrogen fixat 20.1 84 0.0018 17.4 1.6 24 180-203 4-27 (49)
No 1
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-40 Score=247.98 Aligned_cols=215 Identities=52% Similarity=0.868 Sum_probs=192.9
Q ss_pred cceEEecccCChhhHHHHHHHHhcCCCcceeecCCCCCchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHHhhcCCCC
Q 027726 3 ENVVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYIDEVWHHKS 82 (219)
Q Consensus 3 ~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~~~~~~~~ 82 (219)
+.++||++..|||++|++++|.+|||+|+.++.|+.++++++++.||.+++||||+++|.+|+||..|++|||+.+++++
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~~ 87 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSGP 87 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccCCC
Confidence 45999999999999999999999999999999999999999999996569999999999999999999999999999779
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcccccchhhhcc-CCchHHHHHHHHHHHHHHHHHHHhC-CCCcccCCCCChhHHHHHhh
Q 027726 83 PLMPSDSYLRSQARFWADYVDKNIYGIGKRIWS-GKGEDQEAAKKEMIGFLKNMEAELG-DKHFFGGESIGFVDVALVPF 160 (219)
Q Consensus 83 ~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~le~~L~-~~~~l~G~~~s~aD~~l~~~ 160 (219)
+++|.||.++++++.|..+++..+.......+. .+++..+...+.+.+.|..||+.|+ +++|+.|+++|+.|+++++.
T Consensus 88 ~iLP~DPy~Ra~arfwa~~id~~~~~~~~~~~~~~~~e~~~~~~~e~~e~l~~lE~el~k~k~~fgG~~~G~vDi~~~p~ 167 (231)
T KOG0406|consen 88 PILPSDPYERAQARFWAEYIDKKVFFVGRFVVAAKGGEEQEAAKEELREALKVLEEELGKGKDFFGGETIGFVDIAIGPS 167 (231)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCHhhhhHHhh
Confidence 999999999999999999999988777776666 3457888899999999999999998 78999999999999999977
Q ss_pred hhhhhhhh-hhc--CCcccccCchHHHHHHHHhcccchhccCCChhhHHHHHHHHHHHhc
Q 027726 161 TTWFYTYE-TFG--NLSVEAECPKLIAWAKRCSQKESVSASLADPHDIYDFALGLRMKYG 217 (219)
Q Consensus 161 l~~~~~~~-~~~--~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (219)
+.+..... ... .+.....+|+|.+|.+++.+++++++++++.+.+.+++++++.+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~P~L~~W~~~~~~~~~V~~~~p~~e~~~e~~~~~~~~~~ 227 (231)
T KOG0406|consen 168 FERWLAVLEKFGGVKFIIEEETPKLIKWIKRMKEDEAVKAVLPDSEKVVEFMKKYRQGSP 227 (231)
T ss_pred HHHHHHHHHHhcCcccCCCCCCccHHHHHHHHhcChhHHhhcCCHHHHHHHHHHHHHhcc
Confidence 65554443 333 2333488999999999999999999999999999999999998754
No 2
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=100.00 E-value=5e-39 Score=245.29 Aligned_cols=196 Identities=25% Similarity=0.434 Sum_probs=169.2
Q ss_pred cceEEecccCChhhHHHHHHHHhcCCCcceeecCCCCCchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHHhhcCCCC
Q 027726 3 ENVVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYIDEVWHHKS 82 (219)
Q Consensus 3 ~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~~~~~~~~ 82 (219)
++|+||+.+.||+|++|+++|+++|++|+.+.++..+++++|+++||. |+||+|+++|.+|+||.+|++||+++++ +.
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~-g~VPvL~~~g~~l~ES~AIl~YL~~~~~-~~ 86 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPY-QSVPTLVDRELTLYESRIIMEYLDERFP-HP 86 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCC-CCCCEEEECCEEeeCHHHHHHHHHHhCC-CC
Confidence 469999999999999999999999999999999988888899999999 9999999999999999999999999998 77
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcccccchhhhccCCchHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCChhHHHHHhhhh
Q 027726 83 PLMPSDSYLRSQARFWADYVDKNIYGIGKRIWSGKGEDQEAAKKEMIGFLKNMEAELGDKHFFGGESIGFVDVALVPFTT 162 (219)
Q Consensus 83 ~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~s~aD~~l~~~l~ 162 (219)
.++|.++.+++++++|..++...+..........++...+...+.+.+.+..+|++|++++|++|+++|+||+++++.+.
T Consensus 87 ~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~AD~~l~~~~~ 166 (211)
T PRK09481 87 PLMPVYPVARGESRLMMHRIEKDWYSLMNKIVNGSASEADAARKQLREELLAIAPVFGEKPYFMSEEFSLVDCYLAPLLW 166 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCccHHHHHHHHHHH
Confidence 89999999999999999887665544433333333445667788899999999999999999999999999999999987
Q ss_pred hhhhhhhhcCCccc-ccCchHHHHHHHHhcccchhccCCChhh
Q 027726 163 WFYTYETFGNLSVE-AECPKLIAWAKRCSQKESVSASLADPHD 204 (219)
Q Consensus 163 ~~~~~~~~~~~~~~-~~~p~l~~~~~~~~~~~~~~~~~~~~~~ 204 (219)
++... +..+. ..+|+|++|++++.++|+|++++.+.+.
T Consensus 167 ~~~~~----~~~~~~~~~p~l~~w~~~~~~rp~~~~~~~~~~~ 205 (211)
T PRK09481 167 RLPVL----GIELSGPGAKELKGYMTRVFERDSFLASLTEAER 205 (211)
T ss_pred HHHhc----CCCCCCCCChhHHHHHHHHhccHHHHHHcCHHHH
Confidence 76642 23333 5789999999999999999999876544
No 3
>PLN02473 glutathione S-transferase
Probab=100.00 E-value=1.7e-35 Score=226.41 Aligned_cols=194 Identities=19% Similarity=0.302 Sum_probs=160.8
Q ss_pred ceEEecccCChhhHHHHHHHHhcCCCcceeecCCC---CCchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHHhhcCC
Q 027726 4 NVVLLGFWPSSFAMRVKIALAEKGIKYESKEENLF---DKSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYIDEVWHH 80 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~~~~~~ 80 (219)
.|+||+++.||++++|+++|+++|++|+.+.++.. ...+++..+||. |+||+|+++|.+|+||.+|++||+++++.
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~ES~aI~~YL~~~~~~ 80 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPF-GQVPAIEDGDLKLFESRAIARYYATKYAD 80 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCC-CCCCeEEECCEEEEehHHHHHHHHHHcCC
Confidence 38999999999999999999999999999998875 467888999999 99999999999999999999999999973
Q ss_pred C-CCCCCCCHHHHHHHHHHHHHHhcccccchh-----hhcc---CC---chHHHHHHHHHHHHHHHHHHHhCCCCcccCC
Q 027726 81 K-SPLMPSDSYLRSQARFWADYVDKNIYGIGK-----RIWS---GK---GEDQEAAKKEMIGFLKNMEAELGDKHFFGGE 148 (219)
Q Consensus 81 ~-~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~---~~---~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~ 148 (219)
. .+++|.++.+++++++|..+..+.+.+... ..+. .. ....+....++.+.++.+|++|++++|++|+
T Consensus 81 ~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd 160 (214)
T PLN02473 81 QGTDLLGKTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLATNRYLGGD 160 (214)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhccCCcccCC
Confidence 2 369999999999999999988776654321 1111 11 2345567788999999999999988999999
Q ss_pred CCChhHHHHHhhhhhhhhhhhhcCCcccccCchHHHHHHHHhcccchhccCC
Q 027726 149 SIGFVDVALVPFTTWFYTYETFGNLSVEAECPKLIAWAKRCSQKESVSASLA 200 (219)
Q Consensus 149 ~~s~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~ 200 (219)
++|+||+++++.+.++...... ..+..++|+|++|++++.++|+|++++.
T Consensus 161 ~~t~ADi~~~~~~~~~~~~~~~--~~~~~~~P~l~~w~~~~~~~p~~~~~~~ 210 (214)
T PLN02473 161 EFTLADLTHMPGMRYIMNETSL--SGLVTSRENLNRWWNEISARPAWKKLME 210 (214)
T ss_pred CCCHHHHHHHHHHHHHHhcccc--HHHHhcCHHHHHHHHHHhcChhhHHHHH
Confidence 9999999999998776532111 1223789999999999999999999864
No 4
>PRK15113 glutathione S-transferase; Provisional
Probab=100.00 E-value=2e-35 Score=225.87 Aligned_cols=194 Identities=24% Similarity=0.289 Sum_probs=160.3
Q ss_pred CC-cceEEeccc--CChhhHHHHHHHHhcCCCcceeecCCCC---CchhhhhhCCCCCccceEeeCCeeeehhHHHHHHH
Q 027726 1 MA-ENVVLLGFW--PSSFAMRVKIALAEKGIKYESKEENLFD---KSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYI 74 (219)
Q Consensus 1 M~-~~~~L~~~~--~s~~~~~v~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL 74 (219)
|+ ++++||+.+ .||+|++++++|+++||+|+.+.++... ..++|+++||. |+||+|++||.+|+||.+|++||
T Consensus 1 ~~~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~-g~VP~L~~~~~~l~ES~aI~~YL 79 (214)
T PRK15113 1 MSKPAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLT-RRVPTLQHDDFELSESSAIAEYL 79 (214)
T ss_pred CCCCeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCC-CCCCEEEECCEEEecHHHHHHHH
Confidence 66 679999976 6999999999999999999999999764 45899999999 99999999999999999999999
Q ss_pred HhhcCCCCC---CCCCCHHHHHHHHHHHHHHhcccccchhh-----hccC--CchHHHHHHHHHHHHHHHHHHHhCC-CC
Q 027726 75 DEVWHHKSP---LMPSDSYLRSQARFWADYVDKNIYGIGKR-----IWSG--KGEDQEAAKKEMIGFLKNMEAELGD-KH 143 (219)
Q Consensus 75 ~~~~~~~~~---l~p~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~l~~~l~~le~~L~~-~~ 143 (219)
+++++ ++. ++|.++.+++++++|+.+....+.+.... .+.. .....+...+++.+.++.+|.+|++ ++
T Consensus 80 ~~~~~-~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~ 158 (214)
T PRK15113 80 EERFA-PPAWERIYPADLQARARARQIQAWLRSDLMPLREERPTDVVFAGAKKAPLSEAGKAAAEKLFAVAERLLAPGQP 158 (214)
T ss_pred HHHcC-CCCccccCCCCHHHHHHHHHHHHHHHhhhHHHhccCccchhccCCCCCcccHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99998 554 99999999999999999987665543211 1111 1333566778899999999999975 57
Q ss_pred cccCCCCChhHHHHHhhhhhhhhhhhhcCCcccccCchHHHHHHHHhcccchhccCCChhh
Q 027726 144 FFGGESIGFVDVALVPFTTWFYTYETFGNLSVEAECPKLIAWAKRCSQKESVSASLADPHD 204 (219)
Q Consensus 144 ~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~ 204 (219)
|++|+ +|+||+++++++.++... +..+ .|+|.+|++++.++|+|++++++.+.
T Consensus 159 ~l~G~-~TlADi~l~~~l~~~~~~----~~~~---~p~l~~~~~r~~~rp~~~~~~~~~~~ 211 (214)
T PRK15113 159 NLFGE-WCIADTDLALMLNRLVLH----GDEV---PERLADYATFQWQRASVQRWLALSAK 211 (214)
T ss_pred EeeCC-ccHHHHHHHHHHHHHHHc----CCCC---CHHHHHHHHHHhcCHHHHHHHHHhhh
Confidence 99996 999999999999876542 2222 29999999999999999999866553
No 5
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=100.00 E-value=3.2e-34 Score=219.66 Aligned_cols=197 Identities=16% Similarity=0.229 Sum_probs=161.2
Q ss_pred cCChhhHHHHHHHHhcCCCcceeecCCCCCchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHHhhcCCC--CCCCCCC
Q 027726 11 WPSSFAMRVKIALAEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYIDEVWHHK--SPLMPSD 88 (219)
Q Consensus 11 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~~~~~~~--~~l~p~~ 88 (219)
..||+|++++++|.++||+|+.+.+++..++++|+++||. |++|+|+++|.+|+||.+|++||++.++.+ +.+.|.+
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~-g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~p~~ 95 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPG-THPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLSPKH 95 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcC-CCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCCCCC
Confidence 4599999999999999999999999999889999999998 999999999999999999999999999732 4566666
Q ss_pred HHHHHHHHHHHHHHhcccccchhhhccCC-chHHHHHHHHHHHHHHHHHHHhC------------------CCCcccCCC
Q 027726 89 SYLRSQARFWADYVDKNIYGIGKRIWSGK-GEDQEAAKKEMIGFLKNMEAELG------------------DKHFFGGES 149 (219)
Q Consensus 89 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~le~~L~------------------~~~~l~G~~ 149 (219)
+..++.... +...+..++.+. +...+...+++.+.+..||.+|. +++|+.|++
T Consensus 96 ~~~~~~~~~--------l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~~~~~~~f~~Gd~ 167 (236)
T TIGR00862 96 PESNTAGLD--------IFAKFSAYIKNSNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDEKVSRRKFLDGDE 167 (236)
T ss_pred HHHHHHHHH--------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCCcccCCc
Confidence 655543211 111111112222 23344566779999999999996 579999999
Q ss_pred CChhHHHHHhhhhhhhhh-hhhcCCcccccCchHHHHHHHHhcccchhccCCChhhHHHHHHHHHHHh
Q 027726 150 IGFVDVALVPFTTWFYTY-ETFGNLSVEAECPKLIAWAKRCSQKESVSASLADPHDIYDFALGLRMKY 216 (219)
Q Consensus 150 ~s~aD~~l~~~l~~~~~~-~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (219)
+|+|||++++.+.++... ..+.++.+..++|+|.+|++++.++|+|+++++..+++..++.+.++++
T Consensus 168 ~tlaD~~l~p~l~~l~~~~~~~~~~~i~~~~p~l~~w~~~~~~~~sf~~t~p~~~~i~~~~~~~~~~~ 235 (236)
T TIGR00862 168 LTLADCNLLPKLHIVKVVAKKYRNFDIPAEFTGVWRYLSNAYAREEFTNTCPDDKEIELAYADVAKRL 235 (236)
T ss_pred cchhhHHHHHHHHHHHHHHHHHhCcCccccCchHHHHHHHHhccchHHhhCCChHHHHHHHHHHhhcC
Confidence 999999999999998864 2455777678999999999999999999999999999999998886554
No 6
>PLN02395 glutathione S-transferase
Probab=100.00 E-value=2e-34 Score=220.58 Aligned_cols=193 Identities=21% Similarity=0.351 Sum_probs=157.8
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecCCC---CCchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHHhhcCC-
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEENLF---DKSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYIDEVWHH- 80 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~~~~~~- 80 (219)
++||+.+. ++++|++++|+++|++|+.+.++.. .++++|.++||. |+||+|+++|.+|+||.+|++||+++++.
T Consensus 3 ~~ly~~~~-~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~-g~vP~L~~~~~~l~ES~aI~~YL~~~~~~~ 80 (215)
T PLN02395 3 LKVYGPAF-ASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPF-GVVPVIVDGDYKIFESRAIMRYYAEKYRSQ 80 (215)
T ss_pred EEEEcCCc-CcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHHHHcCCC
Confidence 89999765 4699999999999999999999875 457899999999 99999999999999999999999999973
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhcccccchhhh-----c------cCCchHHHHHHHHHHHHHHHHHHHhCCCCcccCCC
Q 027726 81 KSPLMPSDSYLRSQARFWADYVDKNIYGIGKRI-----W------SGKGEDQEAAKKEMIGFLKNMEAELGDKHFFGGES 149 (219)
Q Consensus 81 ~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~------~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~ 149 (219)
+++++|.++.+++++++|+.+.+..+.+.+... + ..+....+...+++.+.++.||.+|++++|++|++
T Consensus 81 ~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~ 160 (215)
T PLN02395 81 GPDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLSKSKYLAGDF 160 (215)
T ss_pred CcCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCCccccCCC
Confidence 236999999999999999998877665443221 1 11223356678889999999999999889999999
Q ss_pred CChhHHHHHhhhhhhhhhhhhcCCcccccCchHHHHHHHHhcccchhccCCC
Q 027726 150 IGFVDVALVPFTTWFYTYETFGNLSVEAECPKLIAWAKRCSQKESVSASLAD 201 (219)
Q Consensus 150 ~s~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~ 201 (219)
+|+||+++++++.++... .........+|+|++|++++.++|+|++++..
T Consensus 161 ~s~ADi~l~~~~~~~~~~--~~~~~~~~~~p~L~~w~~~~~~rp~~k~~~~~ 210 (215)
T PLN02395 161 VSLADLAHLPFTEYLVGP--IGKAYLIKDRKHVSAWWDDISSRPAWKEVLAK 210 (215)
T ss_pred cCHHHHHHHHHHHHHhcc--cchhhhhccCchHHHHHHHHHcChHHHHHHHH
Confidence 999999999988765421 11111236789999999999999999998754
No 7
>PRK10542 glutathionine S-transferase; Provisional
Probab=100.00 E-value=1.5e-34 Score=219.09 Aligned_cols=190 Identities=19% Similarity=0.371 Sum_probs=158.3
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecCCCC----CchhhhhhCCCCCccceEe-eCCeeeehhHHHHHHHHhhcC
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFD----KSPLLLEMNPVDKKIPVLI-HDGKPICESLIIIQYIDEVWH 79 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~----~~~~~~~~~p~~~~vP~L~-~~g~~i~es~~I~~yL~~~~~ 79 (219)
|+||+.+.| ++++++++|+++||+|+.+.++... ..++|.++||. |+||+|+ +||.+|+||.+|++||+++++
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~-g~vPvL~~~~g~~l~eS~aI~~YL~~~~~ 78 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPK-GQVPALLLDDGTLLTEGVAIMQYLADSVP 78 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcC-CCCCeEEeCCCcEeecHHHHHHHHHHhCc
Confidence 589998765 7999999999999999999998753 34789999999 9999998 588899999999999999998
Q ss_pred CCCCCC-CCCHHHHHHHHHHHHHHhcccccchhhhccCC--chHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCChhHHH
Q 027726 80 HKSPLM-PSDSYLRSQARFWADYVDKNIYGIGKRIWSGK--GEDQEAAKKEMIGFLKNMEAELGDKHFFGGESIGFVDVA 156 (219)
Q Consensus 80 ~~~~l~-p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~s~aD~~ 156 (219)
+++++ |.++.+++++++|+.+..+.+.+.+...+... +...+.....+.+.++.+|++|++++||+|+++|+||++
T Consensus 79 -~~~l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~ADi~ 157 (201)
T PRK10542 79 -DRQLLAPVGSLSRYHTIEWLNYIATELHKGFTPLFRPDTPEEYKPTVRAQLEKKFQYVDEALADEQWICGQRFTIADAY 157 (201)
T ss_pred -ccccCCCCCcHHHHHHHHHHHHHHhhhhhhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCCcHHhHH
Confidence 56665 66788999999999988777666544444322 222456678899999999999998999999999999999
Q ss_pred HHhhhhhhhhhhhhcCCcccccCchHHHHHHHHhcccchhccCCCh
Q 027726 157 LVPFTTWFYTYETFGNLSVEAECPKLIAWAKRCSQKESVSASLADP 202 (219)
Q Consensus 157 l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~ 202 (219)
+++++.++... +... ..+|+|.+|++++.++|+|++++...
T Consensus 158 l~~~~~~~~~~----~~~~-~~~p~l~~w~~~~~~~p~~k~~~~~~ 198 (201)
T PRK10542 158 LFTVLRWAYAV----KLNL-EGLEHIAAYMQRVAERPAVAAALKAE 198 (201)
T ss_pred HHHHHHHhhcc----CCCc-ccchHHHHHHHHHHcCHHHHHHHHHc
Confidence 99998877542 2233 67999999999999999999987543
No 8
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=100.00 E-value=3.2e-34 Score=219.46 Aligned_cols=188 Identities=18% Similarity=0.267 Sum_probs=153.6
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecCCCC---CchhhhhhCCCCCccceEee-----CC--eeeehhHHHHHHH
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFD---KSPLLLEMNPVDKKIPVLIH-----DG--KPICESLIIIQYI 74 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~vP~L~~-----~g--~~i~es~~I~~yL 74 (219)
++||+.+ +++|++|+++|+++||+|+.+.+++.. ..++|+++||. |+||+|++ +| .+|+||.+|++||
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~-gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPN-NKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcC-CCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 7999886 799999999999999999999998763 36789999999 99999996 45 4799999999999
Q ss_pred HhhcCCCCCCCCCCHHHHHHHHHHHHHHhcccccchhhh--ccC-----CchHHHHHHHHHHHHHHHHHHHhCCCCcccC
Q 027726 75 DEVWHHKSPLMPSDSYLRSQARFWADYVDKNIYGIGKRI--WSG-----KGEDQEAAKKEMIGFLKNMEAELGDKHFFGG 147 (219)
Q Consensus 75 ~~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G 147 (219)
++.++ .+.|.++.+++++++|+.|....+.+.+... +.. +....+....++.+.+..||.+|++++|++|
T Consensus 80 ~~~~~---~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G 156 (215)
T PRK13972 80 AEKTG---LFLSHETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLENSPWLGG 156 (215)
T ss_pred HHhcC---CCCCCCHHHHHHHHHHHHHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHhccCccccC
Confidence 99986 3678889999999999999887776554321 111 1234556677899999999999998999999
Q ss_pred CCCChhHHHHHhhhhhhhhhhhhcCCcccccCchHHHHHHHHhcccchhccCCCh
Q 027726 148 ESIGFVDVALVPFTTWFYTYETFGNLSVEAECPKLIAWAKRCSQKESVSASLADP 202 (219)
Q Consensus 148 ~~~s~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~ 202 (219)
+++|+||+++++.+..... .+.. ...+|+|.+|++++.++|+|++++...
T Consensus 157 d~~t~ADi~l~~~~~~~~~----~~~~-~~~~P~l~~w~~r~~~rp~~~~~~~~~ 206 (215)
T PRK13972 157 ENYSIADIACWPWVNAWTR----QRID-LAMYPAVKNWHERIRSRPATGQALLKA 206 (215)
T ss_pred CCCCHHHHHHHHHHHHHhh----cCCc-chhCHHHHHHHHHHHhCHHHHHHHHHh
Confidence 9999999999887643322 1223 277999999999999999999887543
No 9
>PRK10357 putative glutathione S-transferase; Provisional
Probab=100.00 E-value=1.2e-33 Score=214.43 Aligned_cols=192 Identities=19% Similarity=0.291 Sum_probs=158.4
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecCCCCCchhhhhhCCCCCccceEe-eCCeeeehhHHHHHHHHhhcCCCCC
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLI-HDGKPICESLIIIQYIDEVWHHKSP 83 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~-~~g~~i~es~~I~~yL~~~~~~~~~ 83 (219)
|+||+.+.||++++|+++|+++|++|+.+.++...+++++..+||. |++|+|+ ++|.+++||.+|++||++.++ ++.
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~-g~vP~L~~~~g~~l~eS~aI~~yL~~~~~-~~~ 78 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPL-GKVPALVTEEGECWFDSPIIAEYIELLNV-APA 78 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCc-cCCCeEEeCCCCeeecHHHHHHHHHHhCC-CCC
Confidence 5899999999999999999999999999999887777788899999 9999998 678999999999999999987 677
Q ss_pred CCCCCHHHHHHHHHHHHHHhcccccchhhhc---c-C---CchHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCChhHHH
Q 027726 84 LMPSDSYLRSQARFWADYVDKNIYGIGKRIW---S-G---KGEDQEAAKKEMIGFLKNMEAELGDKHFFGGESIGFVDVA 156 (219)
Q Consensus 84 l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~-~---~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~s~aD~~ 156 (219)
++|.++.+++++++|..+....+........ . . .....+.....+.+.++.+|++|++++ ++|+++|+||++
T Consensus 79 l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~-l~Gd~~t~ADi~ 157 (202)
T PRK10357 79 MLPRDPLAALRVRQLEALADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLVDGT-LKTDTVNLATIA 157 (202)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhccCc-ccCCCcCHHHHH
Confidence 9999999999999998887665543321111 1 1 122345677889999999999998778 999999999999
Q ss_pred HHhhhhhhhhhhhhcCCcccccCchHHHHHHHHhcccchhccCCC
Q 027726 157 LVPFTTWFYTYETFGNLSVEAECPKLIAWAKRCSQKESVSASLAD 201 (219)
Q Consensus 157 l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~ 201 (219)
+++.+.++.... .+......+|++++|++++.+||+|+++.+.
T Consensus 158 l~~~l~~~~~~~--~~~~~~~~~p~l~~~~~~i~~rp~~~~~~~~ 200 (202)
T PRK10357 158 IACAVGYLNFRR--VAPGWCVDRPHLVKLVENLFQRESFARTEPP 200 (202)
T ss_pred HHHHHHHHHhcc--cCcchhhcChHHHHHHHHHhcChhhhhcCCC
Confidence 999988765421 1112236799999999999999999999865
No 10
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-33 Score=215.90 Aligned_cols=185 Identities=28% Similarity=0.472 Sum_probs=160.6
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecCCC--CCchhhhhhCCCCCccceEeeCCe-eeehhHHHHHHHHhhcCCC
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEENLF--DKSPLLLEMNPVDKKIPVLIHDGK-PICESLIIIQYIDEVWHHK 81 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~--~~~~~~~~~~p~~~~vP~L~~~g~-~i~es~~I~~yL~~~~~~~ 81 (219)
++||+.+.||+|+++++++.++|++|+.+.|+.. ..+++|..+||. |+||+|+++|. +|+||.+|++||+++++ +
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~-gkVPvL~~~~~~~l~ES~AI~~YL~~~~~-~ 78 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPL-GKVPALVDDDGEVLTESGAILEYLAERYP-G 78 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCC-CCCCEEeeCCCCeeecHHHHHHHHHhhCC-C
Confidence 5899999999999999999999999999999988 478999999999 99999997655 89999999999999999 4
Q ss_pred CCCCCCCHH---HHHHHHHHHHHHhcccccchhhhccC--------CchHHHHHHHHHHHHHHHHHHHhCCCCcccCCCC
Q 027726 82 SPLMPSDSY---LRSQARFWADYVDKNIYGIGKRIWSG--------KGEDQEAAKKEMIGFLKNMEAELGDKHFFGGESI 150 (219)
Q Consensus 82 ~~l~p~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~ 150 (219)
+.++|.++. +++.+..|+.+....+.+.+...... .....+.....+...++.+|..|++++|++|+++
T Consensus 79 ~~l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~ 158 (211)
T COG0625 79 PPLLPADPLARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLEALLADGPYLAGDRF 158 (211)
T ss_pred CCcCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCC
Confidence 449998775 78888899999988887776654432 2455778889999999999999999999999999
Q ss_pred ChhHHHHHhhhhhhhhhhhhcCCcccccCchHHHHHHHHhcccchh
Q 027726 151 GFVDVALVPFTTWFYTYETFGNLSVEAECPKLIAWAKRCSQKESVS 196 (219)
Q Consensus 151 s~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~ 196 (219)
|+||+++++.+.++... +..+ ..+|++.+|++++.++|+++
T Consensus 159 tiAD~~~~~~~~~~~~~----~~~~-~~~p~l~~w~~r~~~rp~~~ 199 (211)
T COG0625 159 TIADIALAPLLWRLALL----GEEL-ADYPALKAWYERVLARPAFR 199 (211)
T ss_pred CHHHHHHHHHHHHhhhc----Cccc-ccChHHHHHHHHHHcCCchh
Confidence 99999999999886542 2233 67999999999999999965
No 11
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=100.00 E-value=1.9e-33 Score=214.46 Aligned_cols=190 Identities=27% Similarity=0.393 Sum_probs=157.0
Q ss_pred EEecccCChhhHHHHHHHHhcCCCcceeecCCC----CCchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHHhhcCCC
Q 027726 6 VLLGFWPSSFAMRVKIALAEKGIKYESKEENLF----DKSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYIDEVWHHK 81 (219)
Q Consensus 6 ~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~----~~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~~~~~~~ 81 (219)
+||+...||++++++++|.++||+|+.+.++.. ...+++.++||. |++|+|+++|.+|+||.+|++||++.++ +
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~ES~aI~~yl~~~~~-~ 78 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQ-GLVPTLDIDGEVLTQSLAIIEYLEETYP-D 78 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCC-CcCCEEEECCEEeecHHHHHHHHHHhCC-C
Confidence 489898999999999999999999999999863 246789999998 9999999999999999999999999998 6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhcccccc----hhhhcc----CC-chHHHHHHHHHHHHHHHHHHHhCC--CCcccCCCC
Q 027726 82 SPLMPSDSYLRSQARFWADYVDKNIYGI----GKRIWS----GK-GEDQEAAKKEMIGFLKNMEAELGD--KHFFGGESI 150 (219)
Q Consensus 82 ~~l~p~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~----~~-~~~~~~~~~~l~~~l~~le~~L~~--~~~l~G~~~ 150 (219)
..++|.++.+++++++|..+....+.+. +...+. .+ ....+...+.+.+.|+.||++|++ ++|++|+++
T Consensus 79 ~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~ 158 (210)
T TIGR01262 79 PPLLPADPIKRARVRALALLIACDIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQPHAGAFCVGDTP 158 (210)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhcccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEeeCCCC
Confidence 7799999999999999999887655432 111111 11 222344566799999999999975 469999999
Q ss_pred ChhHHHHHhhhhhhhhhhhhcCCcccccCchHHHHHHHHhcccchhccCCCh
Q 027726 151 GFVDVALVPFTTWFYTYETFGNLSVEAECPKLIAWAKRCSQKESVSASLADP 202 (219)
Q Consensus 151 s~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~ 202 (219)
|+||+++++.+.++... +..+ ..+|+|++|++++.++|+|++++.+.
T Consensus 159 T~ADi~~~~~l~~~~~~----~~~~-~~~p~l~~~~~~~~~rp~~~~~~~~~ 205 (210)
T TIGR01262 159 TLADLCLVPQVYNAERF----GVDL-TPYPTLRRIAAALAALPAFQRAHPEN 205 (210)
T ss_pred CHHHHHHHHHHHHHHHc----CCCc-ccchHHHHHHHHHhcCHHHHHhCccc
Confidence 99999999999876532 2223 68999999999999999999998754
No 12
>PRK11752 putative S-transferase; Provisional
Probab=100.00 E-value=3.5e-32 Score=213.69 Aligned_cols=196 Identities=18% Similarity=0.252 Sum_probs=154.8
Q ss_pred cceEEecccCChhhHHHHHHHHhc------CCCcceeecCCCC---CchhhhhhCCCCCccceEeeC----CeeeehhHH
Q 027726 3 ENVVLLGFWPSSFAMRVKIALAEK------GIKYESKEENLFD---KSPLLLEMNPVDKKIPVLIHD----GKPICESLI 69 (219)
Q Consensus 3 ~~~~L~~~~~s~~~~~v~~~l~~~------gi~~~~~~v~~~~---~~~~~~~~~p~~~~vP~L~~~----g~~i~es~~ 69 (219)
.+|+||+.+ ||+|++|+++|+++ |++|+.+.++... ..++|.++||. |+||+|+++ |.+|+||.+
T Consensus 43 ~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~-GkVP~Lv~~dg~~~~~L~ES~A 120 (264)
T PRK11752 43 HPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPN-SKIPALLDRSGNPPIRVFESGA 120 (264)
T ss_pred CCeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCC-CCCCEEEeCCCCCCeEEEcHHH
Confidence 369999975 99999999999997 8999999988753 46899999999 999999974 368999999
Q ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHhccccc---chhhhc--cCC--chHHHHHHHHHHHHHHHHHHHhCCC
Q 027726 70 IIQYIDEVWHHKSPLMPSDSYLRSQARFWADYVDKNIYG---IGKRIW--SGK--GEDQEAAKKEMIGFLKNMEAELGDK 142 (219)
Q Consensus 70 I~~yL~~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~---~~~~~~--~~~--~~~~~~~~~~l~~~l~~le~~L~~~ 142 (219)
|++||+++++ +++|.++.+++++++|+.+....+.. .+...+ ..+ ....+....++.+.|+.+|++|+++
T Consensus 121 Il~YL~~~~~---~L~P~~~~era~v~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~le~~L~~~ 197 (264)
T PRK11752 121 ILLYLAEKFG---AFLPKDLAARTETLNWLFWQQGSAPFLGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVLDKQLAEH 197 (264)
T ss_pred HHHHHHHhcC---CcCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999987 39999999999999999987654311 111111 111 2234566678899999999999988
Q ss_pred CcccCCCCChhHHHHHhhhhhhhhhhhhc--CCcccccCchHHHHHHHHhcccchhccCCChh
Q 027726 143 HFFGGESIGFVDVALVPFTTWFYTYETFG--NLSVEAECPKLIAWAKRCSQKESVSASLADPH 203 (219)
Q Consensus 143 ~~l~G~~~s~aD~~l~~~l~~~~~~~~~~--~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~ 203 (219)
+||+|+++|+||+++++.+.++.....+. .......+|++++|++++.++|+|++++..+.
T Consensus 198 ~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~~P~L~~w~~rv~~rPs~k~~~~~~~ 260 (264)
T PRK11752 198 EYIAGDEYTIADIAIWPWYGNLVLGNLYDAAEFLDVGSYKHVQRWAKEIAERPAVKRGRIVNR 260 (264)
T ss_pred CCCCCCccCHHHHHHHHHHHHHhhccccccccccCcccCHHHHHHHHHHHhCHHHHHHHhccc
Confidence 99999999999999998887664321111 11113679999999999999999999876554
No 13
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=100.00 E-value=8.5e-32 Score=210.54 Aligned_cols=190 Identities=22% Similarity=0.253 Sum_probs=152.3
Q ss_pred cCChhhHHHHHHHHhcCCCcceeecCCCCCchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHHhhcCCCCCCCCCCHH
Q 027726 11 WPSSFAMRVKIALAEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYIDEVWHHKSPLMPSDSY 90 (219)
Q Consensus 11 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~~~~~~~~~l~p~~~~ 90 (219)
..||+|++++++|+++|++|+.+.+++.+++++|.++||. |++|+|+++|.+|+||.+|++||+++++ ++.+. ++.
T Consensus 71 g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~-GkVPvL~~d~~~L~ES~aI~~YL~e~~p-~~~L~--~~~ 146 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPE-GKVPVVKLDEKWVADSDVITQALEEKYP-DPPLA--TPP 146 (265)
T ss_pred CCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCC-CCCCEEEECCEEEecHHHHHHHHHHHCC-CCCCC--CHH
Confidence 3499999999999999999999999998889999999999 9999999988999999999999999999 55554 577
Q ss_pred HHHHHHHHHHHHhcccccchhhhccCCchHHHHHHHHHHHHHHHHHHHhCC-CCcccCCCCChhHHHHHhhhhhhhhhh-
Q 027726 91 LRSQARFWADYVDKNIYGIGKRIWSGKGEDQEAAKKEMIGFLKNMEAELGD-KHFFGGESIGFVDVALVPFTTWFYTYE- 168 (219)
Q Consensus 91 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~-~~~l~G~~~s~aD~~l~~~l~~~~~~~- 168 (219)
+++.+++++... +...+.... ........+.+.+..||++|++ ++|++|+++|+||+++++.+.++....
T Consensus 147 era~i~~~l~~~-------~~~~~~~~~-~~~~~~~~l~~~l~~LE~~L~~~g~yl~Gd~~SlADi~l~p~L~~l~~~~~ 218 (265)
T PLN02817 147 EKASVGSKIFST-------FIGFLKSKD-PGDGTEQALLDELTSFDDYIKENGPFINGEKISAADLSLGPKLYHLEIALG 218 (265)
T ss_pred HHHHHHHHHHHH-------HHHHhccCC-cchHHHHHHHHHHHHHHHHHhcCCCeeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 788877654321 111222111 1123345678889999999974 799999999999999999998776432
Q ss_pred hhcCCcccccCchHHHHHHHHhcccchhccCCChhhHHHHHHHH
Q 027726 169 TFGNLSVEAECPKLIAWAKRCSQKESVSASLADPHDIYDFALGL 212 (219)
Q Consensus 169 ~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (219)
.+.+..+...+|+|++|++++.++|+|+++++..+++.+.+...
T Consensus 219 ~~~~~~i~~~~P~L~~w~~ri~~rps~~~~~~~~~~~~~~~~~~ 262 (265)
T PLN02817 219 HYKNWSVPDSLPFVKSYMKNIFSMESFVKTRALPEDVIAGWRPK 262 (265)
T ss_pred HhcCCCccccCHHHHHHHHHHhcchhHhhcCCCHHHHHHHhHhh
Confidence 23334445789999999999999999999999988887776544
No 14
>PLN02378 glutathione S-transferase DHAR1
Probab=100.00 E-value=7.3e-32 Score=205.95 Aligned_cols=187 Identities=22% Similarity=0.291 Sum_probs=146.9
Q ss_pred ccCChhhHHHHHHHHhcCCCcceeecCCCCCchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHHhhcCCCCCCCCCCH
Q 027726 10 FWPSSFAMRVKIALAEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYIDEVWHHKSPLMPSDS 89 (219)
Q Consensus 10 ~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~~~~~~~~~l~p~~~ 89 (219)
...||||+|++++|+++|++|+.+.+++..++++|+++||. |+||+|++||.+|+||.+|++||+++++ +..+. ++
T Consensus 17 ~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~-G~VPvL~~~~~~l~ES~aI~~YL~~~~~-~~~l~--~~ 92 (213)
T PLN02378 17 LGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQ-GKVPVLKIDDKWVTDSDVIVGILEEKYP-DPPLK--TP 92 (213)
T ss_pred CCCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCC-CCCCEEEECCEEecCHHHHHHHHHHhCC-CCCCC--CH
Confidence 34599999999999999999999999998888999999999 9999999999999999999999999998 55553 56
Q ss_pred HHHHHHHHHHHHHhcccccchhhhccCCchHHHHHHHHHHHHHHHHHHHhC--CCCcccCCCCChhHHHHHhhhhhhhhh
Q 027726 90 YLRSQARFWADYVDKNIYGIGKRIWSGKGEDQEAAKKEMIGFLKNMEAELG--DKHFFGGESIGFVDVALVPFTTWFYTY 167 (219)
Q Consensus 90 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~--~~~~l~G~~~s~aD~~l~~~l~~~~~~ 167 (219)
.+++.+.+.... .+...+... .........+.+.++.+|++|+ +++|++|+++|+||+++++.+.++...
T Consensus 93 ~~~a~i~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~ADi~l~~~~~~l~~~ 164 (213)
T PLN02378 93 AEFASVGSNIFG-------TFGTFLKSK-DSNDGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLAPKLYHLQVA 164 (213)
T ss_pred HHHHHHHHHHHH-------HHHHHHhcC-ChhhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCchhhHHHHHHHHHHHHH
Confidence 667766543321 111111111 1122344677888999999997 479999999999999999998876543
Q ss_pred -hhhcCCcccccCchHHHHHHHHhcccchhccCCChhhHHHH
Q 027726 168 -ETFGNLSVEAECPKLIAWAKRCSQKESVSASLADPHDIYDF 208 (219)
Q Consensus 168 -~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (219)
..+........+|+|++|++++.++|+|++++.........
T Consensus 165 ~~~~~~~~~~~~~p~l~~w~~~~~~rpa~~~~~~~~~~~~~~ 206 (213)
T PLN02378 165 LGHFKSWSVPESFPHVHNYMKTLFSLDSFEKTKTEEKYVISG 206 (213)
T ss_pred HHHhcCCCchhHhHHHHHHHHHHhcCCCeecccCChHHHHHH
Confidence 22233334478999999999999999999999887666543
No 15
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-32 Score=192.17 Aligned_cols=195 Identities=28% Similarity=0.445 Sum_probs=168.3
Q ss_pred CcceEEecccCChhhHHHHHHHHhcCCCcceeecCCCC----CchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHHhh
Q 027726 2 AENVVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFD----KSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYIDEV 77 (219)
Q Consensus 2 ~~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~----~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~~~ 77 (219)
+++++||++..|..++|||++|+.+||+|+.++|++.. ...+|.++||. ++||+|++||.+|+||.||++||++.
T Consensus 3 ~~KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm-~kVP~L~i~g~tl~eS~AII~YLeEt 81 (217)
T KOG0868|consen 3 AAKPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPM-EKVPTLVIDGLTLTESLAIIEYLEET 81 (217)
T ss_pred cccchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCch-hhCCeEEECCEEeehHHHHHHHHHhc
Confidence 36899999999999999999999999999999999763 35689999999 99999999999999999999999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHhcccccchh----hhccCC--chHHHHHHHHHHHHHHHHHHHhC--CCCcccCCC
Q 027726 78 WHHKSPLMPSDSYLRSQARFWADYVDKNIYGIGK----RIWSGK--GEDQEAAKKEMIGFLKNMEAELG--DKHFFGGES 149 (219)
Q Consensus 78 ~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~l~~~l~~le~~L~--~~~~l~G~~ 149 (219)
+| +++|+|.|+..|+.+++....+...+.+.-. ..+..+ +.....+..-+.+.+..||+.|. .++|.+|++
T Consensus 82 ~P-~ppLLP~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~~~~~~W~q~~ItkGF~ALEklL~~~aGkycvGDe 160 (217)
T KOG0868|consen 82 YP-DPPLLPKDPHKRAKARAISLLIASGIQPLQNLSVLKMLNEKEPGYGDQWAQHFITKGFTALEKLLKSHAGKYCVGDE 160 (217)
T ss_pred CC-CCCCCCcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhcccccchhhHHHHHHHHHhHHHHHHHHHHccCCcccCce
Confidence 99 9999999999999999999999998866422 222222 33367888889999999999994 478999999
Q ss_pred CChhHHHHHhhhhhhhhhhhhcCCcccccCchHHHHHHHHhcccchhccCCChh
Q 027726 150 IGFVDVALVPFTTWFYTYETFGNLSVEAECPKLIAWAKRCSQKESVSASLADPH 203 (219)
Q Consensus 150 ~s~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~ 203 (219)
.|+||+++.+.+..... ...++ ..||-+.+..+.+...|+|+...++.+
T Consensus 161 vtiADl~L~pqv~nA~r----f~vdl-~PYPti~ri~e~l~elpaFq~ahP~nQ 209 (217)
T KOG0868|consen 161 VTIADLCLPPQVYNANR----FHVDL-TPYPTITRINEELAELPAFQAAHPDNQ 209 (217)
T ss_pred eehhhhccchhhhhhhh----ccccC-CcCchHHHHHHHHHhCHHHHhcCCCCC
Confidence 99999999999987654 22333 789999999999999999999887654
No 16
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.98 E-value=3.3e-31 Score=201.28 Aligned_cols=191 Identities=19% Similarity=0.237 Sum_probs=141.9
Q ss_pred CCcceEEecccCChhhHHHHHHHHhcCCCcceeecCCCCCchhhh--------hhCCCCCccceEeeCCeeeehhHHHHH
Q 027726 1 MAENVVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFDKSPLLL--------EMNPVDKKIPVLIHDGKPICESLIIIQ 72 (219)
Q Consensus 1 M~~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~--------~~~p~~~~vP~L~~~g~~i~es~~I~~ 72 (219)
|+++++||+++.+++++++|++|+++|++|+.+.++. .. .++. ..||. |++|+|++||.+|+||.+|++
T Consensus 1 m~~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~-~~-~~~~~~~~~~~~~~nP~-g~vP~L~~~~~~l~eS~AI~~ 77 (205)
T PTZ00057 1 MAEEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGE-NG-DAFIEFKNFKKEKDTPF-EQVPILEMDNIIFAQSQAIVR 77 (205)
T ss_pred CCCceEEEecCCCcchHHHHHHHHHcCCCeEEEeccc-cc-hHHHHHHhccccCCCCC-CCCCEEEECCEEEecHHHHHH
Confidence 7778999999999999999999999999999987743 22 2332 47999 999999999999999999999
Q ss_pred HHHhhcCCCCCCCCCCHHHHHHHHHHHHHHhcccccchhhhccCCchHHHHHHHHHHHHHHHHHHHhCCC--CcccCCCC
Q 027726 73 YIDEVWHHKSPLMPSDSYLRSQARFWADYVDKNIYGIGKRIWSGKGEDQEAAKKEMIGFLKNMEAELGDK--HFFGGESI 150 (219)
Q Consensus 73 yL~~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~--~~l~G~~~ 150 (219)
||+++++ +.+.+..+++.+........+........... .+...+.....+.+.+..||++|+++ +|++|+++
T Consensus 78 YLa~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~Gd~~ 152 (205)
T PTZ00057 78 YLSKKYK----ICGESELNEFYADMIFCGVQDIHYKFNNTNLF-KQNETTFLNEELPKWSGYFENILKKNHCNYFVGDNL 152 (205)
T ss_pred HHHHHcC----CCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCcc
Confidence 9999998 44555544444443332221111111110110 11223456678899999999999653 89999999
Q ss_pred ChhHHHHHhhhhhhhhhhhhcCCcccccCchHHHHHHHHhcccchhccCCChh
Q 027726 151 GFVDVALVPFTTWFYTYETFGNLSVEAECPKLIAWAKRCSQKESVSASLADPH 203 (219)
Q Consensus 151 s~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~ 203 (219)
|+||+++++.+.++... .+..+ ..+|+|.+|++++.++|+|++++.++.
T Consensus 153 T~AD~~l~~~~~~~~~~---~~~~l-~~~P~l~~~~~r~~~~P~~k~y~~~~~ 201 (205)
T PTZ00057 153 TYADLAVFNLYDDIETK---YPNSL-KNFPLLKAHNEFISNLPNIKNYISNRK 201 (205)
T ss_pred cHHHHHHHHHHHHHHHh---Chhhh-ccChhHHHHHHHHHhChHHHHHHHhCC
Confidence 99999999988776531 12222 789999999999999999999986554
No 17
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.3e-30 Score=199.97 Aligned_cols=195 Identities=23% Similarity=0.356 Sum_probs=168.4
Q ss_pred ceEEecccCChhhHHHHHHHHhcCCCcceeecCCC---CCchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHHhhcCC
Q 027726 4 NVVLLGFWPSSFAMRVKIALAEKGIKYESKEENLF---DKSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYIDEVWHH 80 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~~~~~~ 80 (219)
.++||+...|+.|+++.+++.++|++|+.+.++.. +..++|+++||. ++||+|+|+|..++||.+|+.||.++|..
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~-~kVP~l~d~~~~l~eS~AI~~Yl~~ky~~ 80 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPL-GKVPALEDGGLTLWESHAILRYLAEKYGP 80 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcC-CCCCeEecCCeEEeeHHHHHHHHHHHcCC
Confidence 48999999999999999999999999999988766 578999999999 99999999999999999999999999862
Q ss_pred -CCCCCCCCHHHHHHHHHHHHHHhcccccch--hhhccC-------CchHHHHHHHHHHHHHHHHHHHhCCCCcccCCCC
Q 027726 81 -KSPLMPSDSYLRSQARFWADYVDKNIYGIG--KRIWSG-------KGEDQEAAKKEMIGFLKNMEAELGDKHFFGGESI 150 (219)
Q Consensus 81 -~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~-------~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~ 150 (219)
+..++|.+..+++.+++|+.+..+.+.+.. ...+.. +..........+...++.+|..|.++.|+.|+++
T Consensus 81 ~~~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~yl~g~~~ 160 (226)
T KOG0867|consen 81 LGGILLPKDLKERAIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKTQVYLAGDQL 160 (226)
T ss_pred CCcccCCcCHHHHHHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHccCCcccCCcc
Confidence 344999999999999999999999888763 222221 3566789999999999999999999999999999
Q ss_pred ChhHHHHHhhhhhhhhhhhhcCCcccccCchHHHHHHHHhcccchhccCCC
Q 027726 151 GFVDVALVPFTTWFYTYETFGNLSVEAECPKLIAWAKRCSQKESVSASLAD 201 (219)
Q Consensus 151 s~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~ 201 (219)
|+||+.+.+.+..+.. ... ......++|++.+|++++.++|++++....
T Consensus 161 tlADl~~~~~~~~~~~-~~~-~~~~~~~~p~v~~W~~~~~~~P~~~e~~~~ 209 (226)
T KOG0867|consen 161 TLADLSLASTLSQFQG-KFA-TEKDFEKYPKVARWYERIQKRPAYEEANEK 209 (226)
T ss_pred cHHHHHHhhHHHHHhH-hhh-hhhhhhhChHHHHHHHHHHhCccHHHHHHH
Confidence 9999999999988742 112 234448999999999999999998887643
No 18
>PRK10387 glutaredoxin 2; Provisional
Probab=99.97 E-value=4e-30 Score=196.16 Aligned_cols=179 Identities=19% Similarity=0.185 Sum_probs=139.2
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecCCCCCchhhhhhCCCCCccceEe-eCCeeeehhHHHHHHHHhhcCCCCC
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLI-HDGKPICESLIIIQYIDEVWHHKSP 83 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~-~~g~~i~es~~I~~yL~~~~~~~~~ 83 (219)
|+||+++.||+|++++++|+++||+|+.+.++..+... -.+.||. ++||+|+ ++|.+|+||.+|++||+++++ ++.
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~-~~~~~p~-~~VPvL~~~~g~~l~eS~aI~~yL~~~~~-~~~ 77 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEAT-PIRMIGQ-KQVPILQKDDGSYMPESLDIVHYIDELDG-KPL 77 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhh-HHHhcCC-cccceEEecCCeEecCHHHHHHHHHHhCC-Ccc
Confidence 68999999999999999999999999998887554222 2578998 9999995 789999999999999999998 444
Q ss_pred CCCCCHHHHHHHHHHHHHHhcccccchhhhccC-------Cc---------------------hHHHHHHHHHHHHHHHH
Q 027726 84 LMPSDSYLRSQARFWADYVDKNIYGIGKRIWSG-------KG---------------------EDQEAAKKEMIGFLKNM 135 (219)
Q Consensus 84 l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-------~~---------------------~~~~~~~~~l~~~l~~l 135 (219)
+.+ ..++.++.|+.+....+...+...+.. .. .......+++.+.|+.+
T Consensus 78 l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 154 (210)
T PRK10387 78 LTG---KRSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLRAL 154 (210)
T ss_pred CCC---cccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHHHH
Confidence 431 256778888887765554333221110 00 00135677899999999
Q ss_pred HHHhCCCCcccCCCCChhHHHHHhhhhhhhhhhhhcCCcccccCchHHHHHHHHhcccchh
Q 027726 136 EAELGDKHFFGGESIGFVDVALVPFTTWFYTYETFGNLSVEAECPKLIAWAKRCSQKESVS 196 (219)
Q Consensus 136 e~~L~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~ 196 (219)
|.+|++ +|++|+++|+||+++++.+.++... .+. ..+|+|.+|++|+.++|.+.
T Consensus 155 e~~L~~-~~l~G~~~s~ADi~l~~~l~~~~~~---~~~---~~~p~l~~w~~r~~~r~~~~ 208 (210)
T PRK10387 155 DPLIVK-PNAVNGELSTDDIHLFPILRNLTLV---KGI---EWPPRVADYRDNMSKKTQVP 208 (210)
T ss_pred HHHhcC-ccccCCCCCHHHHHHHHHHhcceee---cCC---CCCHHHHHHHHHHHHHhCCC
Confidence 999987 9999999999999999999988753 122 23599999999999999763
No 19
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.96 E-value=6.4e-29 Score=185.27 Aligned_cols=205 Identities=23% Similarity=0.314 Sum_probs=156.5
Q ss_pred ceEEecccCChhhHHHHHHHHhcCCCcceeecCCC---CCchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHHhhcCC
Q 027726 4 NVVLLGFWPSSFAMRVKIALAEKGIKYESKEENLF---DKSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYIDEVWHH 80 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~~~~~~ 80 (219)
.+.||.++.|-.+||||++++++||+|+...|+++ ..++||.++||. |.||||++++.+|+++..|++|+++++..
T Consensus 26 ~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~-gevPVl~~g~~II~d~tqIIdYvErtf~g 104 (325)
T KOG4420|consen 26 SLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPG-GEVPVLIHGDNIISDYTQIIDYVERTFTG 104 (325)
T ss_pred cceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCC-CCCceEecCCeecccHHHHHHHHHHhhcc
Confidence 48999999999999999999999999999999988 368999999998 99999999999999999999999999986
Q ss_pred CCCCCCC-CHHHHHHHHHHHHH---------Hhccc----------ccchh---hhc------------cC---------
Q 027726 81 KSPLMPS-DSYLRSQARFWADY---------VDKNI----------YGIGK---RIW------------SG--------- 116 (219)
Q Consensus 81 ~~~l~p~-~~~~~a~~~~~~~~---------~~~~~----------~~~~~---~~~------------~~--------- 116 (219)
++.|+|. +.....++...... ..+++ .|... ... .+
T Consensus 105 er~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pdla~ay~ 184 (325)
T KOG4420|consen 105 ERVLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPDLAEAYL 184 (325)
T ss_pred cccccccccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCchhhHHHH
Confidence 7778883 22222222221111 11110 00000 000 00
Q ss_pred --------------CchHHHHHHHHHHHHHHHHHHHhCC----CCcccCCCCChhHHHHHhhhhhhhhhhhhcCCcc-cc
Q 027726 117 --------------KGEDQEAAKKEMIGFLKNMEAELGD----KHFFGGESIGFVDVALVPFTTWFYTYETFGNLSV-EA 177 (219)
Q Consensus 117 --------------~~~~~~~~~~~l~~~l~~le~~L~~----~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~-~~ 177 (219)
+....++....+...|+..|..|.+ ..||+|+.+|+||+.+.+.|+++..++ +....+ ++
T Consensus 185 akqkkl~~kl~~hdd~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL~G~efslADVsLg~~LhRL~~Lg-~e~~yw~~g 263 (325)
T KOG4420|consen 185 AKQKKLMAKLLEHDDVSYLKKILDELAMVLDQVETELEKRKLCELWLCGCEFSLADVSLGATLHRLKFLG-LEKKYWEDG 263 (325)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhccccceeeccccchHHHHHHHHHHHHHHHcc-cHHHhcccC
Confidence 0122466777888889999999965 679999999999999999999999887 333333 47
Q ss_pred cCchHHHHHHHHhcccchhccCCChhhHHHHHH
Q 027726 178 ECPKLIAWAKRCSQKESVSASLADPHDIYDFAL 210 (219)
Q Consensus 178 ~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (219)
..|+|..|++|+++|++|++++++...+--+..
T Consensus 264 srpnle~Yf~rvrrR~sf~kvlg~~fnilr~~~ 296 (325)
T KOG4420|consen 264 SRPNLESYFERVRRRFSFRKVLGDIFNILRFRL 296 (325)
T ss_pred CCccHHHHHHHHHhhhHHHHhhhhHHHHHHHHH
Confidence 899999999999999999999988776655333
No 20
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.96 E-value=8.5e-28 Score=182.94 Aligned_cols=177 Identities=19% Similarity=0.253 Sum_probs=133.3
Q ss_pred EEecccCChhhHHHHHHHHhcCCCcceeecCCCCCchhhhhhCCCCCccceEe-eCCeeeehhHHHHHHHHhhcCCCCCC
Q 027726 6 VLLGFWPSSFAMRVKIALAEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLI-HDGKPICESLIIIQYIDEVWHHKSPL 84 (219)
Q Consensus 6 ~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~-~~g~~i~es~~I~~yL~~~~~~~~~l 84 (219)
+||+...||+|+||+++|.++|++|+.+.+...+ .....+.||. |++|+|+ +||.+++||.+|++||+++++ .+.+
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~-~~~~~~~np~-g~vP~l~~~~g~~l~es~~I~~yL~~~~~-~~~~ 77 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDD-EETPIRMIGA-KQVPILQKDDGRAMPESLDIVAYFDKLDG-EPLL 77 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCc-chhHHHhcCC-CCcceEEeeCCeEeccHHHHHHHHHHhCC-CccC
Confidence 5899999999999999999999999988775543 2234789998 9999998 889999999999999999998 4433
Q ss_pred CCCCHHHHHHHHHHHHHHhcccccchhhhccC-----------------CchH-----------HHHHHHHHHHHHHHHH
Q 027726 85 MPSDSYLRSQARFWADYVDKNIYGIGKRIWSG-----------------KGED-----------QEAAKKEMIGFLKNME 136 (219)
Q Consensus 85 ~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~-----------~~~~~~~l~~~l~~le 136 (219)
.+. .++.+.+|+.++...+...+...+.. +.+. .+.....+.+.|+.+|
T Consensus 78 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~le 154 (209)
T TIGR02182 78 TGK---VSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEELD 154 (209)
T ss_pred CCC---ChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHHHH
Confidence 332 35566777766555443332211110 0000 0356678899999999
Q ss_pred HHhCCCCcccCCCCChhHHHHHhhhhhhhhhhhhcCCcccccCc-hHHHHHHHHhcccchh
Q 027726 137 AELGDKHFFGGESIGFVDVALVPFTTWFYTYETFGNLSVEAECP-KLIAWAKRCSQKESVS 196 (219)
Q Consensus 137 ~~L~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~~~~p-~l~~~~~~~~~~~~~~ 196 (219)
.+|++++|+.| ++|+||+++++.+.++...+ +. .+| +|.+|++|+++++++.
T Consensus 155 ~~L~~~~~l~g-~~TiADi~l~~~l~~~~~~~---~~----~~p~~l~~w~~Ri~ar~~~~ 207 (209)
T TIGR02182 155 KLIDGPNAVNG-ELSEDDILVFPLLRNLTLVA---GI----NWPSRVADYLDNMSKKSKVP 207 (209)
T ss_pred HHHhCccccCC-CCCHHHHHHHHHhcCeeeec---CC----CCChHHHHHHHHHHHHhCCC
Confidence 99999999955 69999999999998877421 11 246 9999999999988753
No 21
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.3e-26 Score=169.33 Aligned_cols=194 Identities=20% Similarity=0.250 Sum_probs=160.2
Q ss_pred CCcceEEecccCChhhHHHHHHHHhcCCCcceeecCCCCCchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHHhhcCC
Q 027726 1 MAENVVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYIDEVWHH 80 (219)
Q Consensus 1 M~~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~~~~~~ 80 (219)
|+ .++|++++..+++..+|++++..|++|+.+.+...+.........|+ |++|+|..||..|.+|.+|++||+++++
T Consensus 1 m~-~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~~~K~~~pf-gqlP~l~vDg~~i~QS~AI~RyLArk~g- 77 (206)
T KOG1695|consen 1 MP-PYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWEELKDKMPF-GQLPVLEVDGKKLVQSRAILRYLARKFG- 77 (206)
T ss_pred CC-ceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccchhhhcccCCC-CCCCEEeECCEeeccHHHHHHHHHHHhC-
Confidence 55 69999999999999999999999999999999877643444555798 9999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhcccccchhhhccCC-----chHHH-HHHHHHHHHHHHHHHHhC--CCCcccCCCCCh
Q 027726 81 KSPLMPSDSYLRSQARFWADYVDKNIYGIGKRIWSGK-----GEDQE-AAKKEMIGFLKNMEAELG--DKHFFGGESIGF 152 (219)
Q Consensus 81 ~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~l~~~l~~le~~L~--~~~~l~G~~~s~ 152 (219)
+.+.++.++++++...+...+.....+...+... ....+ .......+.+..++..|. ++.||+|+++|+
T Consensus 78 ---l~Gkt~~E~a~vD~i~d~~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~Pa~~~~~~~~~~~L~~~~sgflvGd~lT~ 154 (206)
T KOG1695|consen 78 ---LAGKTEEEEAWVDMIVDQFKDFRWEIFRQPYTAPEAGKSEEELDKLYLPAKPKYFKILEKILKKNKSGFLVGDKLTW 154 (206)
T ss_pred ---cCCCCHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhccchhhhhhhhccchHHHHHHHHHHHHhCCCCeeecCcccH
Confidence 9999999999999999888887766544444321 12222 566677788899999996 567999999999
Q ss_pred hHHHHHhhhhhhhhhhhhcCCcccccCchHHHHHHHHhcccchhccCCChh
Q 027726 153 VDVALVPFTTWFYTYETFGNLSVEAECPKLIAWAKRCSQKESVSASLADPH 203 (219)
Q Consensus 153 aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~ 203 (219)
||+.++..+..+... ........+|+|+++.+++..+|.++++++.+.
T Consensus 155 aDl~i~e~l~~l~~~---~~~~~~~~~P~L~a~~~kv~~~p~ik~~i~~r~ 202 (206)
T KOG1695|consen 155 ADLVIAEHLDTLEEL---LDPSALDHFPKLKAFKERVSSIPNIKKYLESRP 202 (206)
T ss_pred HHHHHHHHHHHHHHh---cCchhhccChHHHHHHHHHhcCchHHHHHhcCC
Confidence 999999999877752 222334678999999999999999999886654
No 22
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.5e-25 Score=162.81 Aligned_cols=195 Identities=18% Similarity=0.275 Sum_probs=162.5
Q ss_pred CChhhHHHHHHHHhcCCCcceeecCCCCCchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHHhhcCCCCCCCCCCHHH
Q 027726 12 PSSFAMRVKIALAEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYIDEVWHHKSPLMPSDSYL 91 (219)
Q Consensus 12 ~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~~~~~~~~~l~p~~~~~ 91 (219)
.||+||++.+.|..+|++|++..||+..++++|+.+.|. +++|+|..|+..++||..|.++|+++++ .+++---++.+
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~-~~~P~l~~d~~~~tDs~~Ie~~Lee~l~-~p~~~~~~~~E 97 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPG-GKPPVLKFDEKWVTDSDKIEEFLEEKLP-PPKLPTLAPPE 97 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCC-CCCCeEEeCCceeccHHHHHHHHHHhcC-CCCCcccCCHH
Confidence 499999999999999999999999999999999999997 9999999999999999999999999999 44432222333
Q ss_pred HHHHHHHHHHHhcccccchhhhccC-CchHHHHHHHHHHHHHHHHHHHhCC---CCcccCCCCChhHHHHHhhhhhhhhh
Q 027726 92 RSQARFWADYVDKNIYGIGKRIWSG-KGEDQEAAKKEMIGFLKNMEAELGD---KHFFGGESIGFVDVALVPFTTWFYTY 167 (219)
Q Consensus 92 ~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~le~~L~~---~~~l~G~~~s~aD~~l~~~l~~~~~~ 167 (219)
.+.+ ...+...+..++.+ ++...+.....+...|..|+.+|.. ++||.|+++|.|||.+++-|+.++..
T Consensus 98 ~asa-------g~diF~kF~~fi~ksk~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aDcsLlPKL~~i~va 170 (221)
T KOG1422|consen 98 SASA-------GSDIFAKFSAFIKKSKDAANDGLEKALLKELEKLDDYLKSPSRRKFLDGDKLTLADCSLLPKLHHIKVA 170 (221)
T ss_pred HHhh-------HHHHHHHHHHHHhCchhhccchHHHHHHHHHHHHHHHhcCccCCccccCCeeeeehhhhchhHHHHHHH
Confidence 3332 22333344444333 3445566777888889999999964 89999999999999999999999876
Q ss_pred h-hhcCCcccccCchHHHHHHHHhcccchhccCCChhhHHHHHHHHHHH
Q 027726 168 E-TFGNLSVEAECPKLIAWAKRCSQKESVSASLADPHDIYDFALGLRMK 215 (219)
Q Consensus 168 ~-~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (219)
. .+.++.++++.+++++|++...++++|..+++..+++...+...+.+
T Consensus 171 ~k~yk~~~IP~~lt~V~rYl~~~ya~d~F~~tcp~d~ei~~~y~~~~~~ 219 (221)
T KOG1422|consen 171 AKHYKNFEIPASLTGVWRYLKNAYARDEFTNTCPADQEIILAYAPVAKK 219 (221)
T ss_pred HHHhcCCCCchhhhHHHHHHHHHHhHHHhhcCCchHHHHHHhhhhhhhc
Confidence 5 88889999999999999999999999999999999999888766554
No 23
>PLN02907 glutamate-tRNA ligase
Probab=99.90 E-value=6.4e-23 Score=178.69 Aligned_cols=158 Identities=18% Similarity=0.209 Sum_probs=130.7
Q ss_pred CCcceEEecccCChhhHHHHHHHHhcCCCcceeecCCCCCchhhhhhCCCCCccceEe-eCCeeeehhHHHHHHHHhhcC
Q 027726 1 MAENVVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLI-HDGKPICESLIIIQYIDEVWH 79 (219)
Q Consensus 1 M~~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~-~~g~~i~es~~I~~yL~~~~~ 79 (219)
|+ ++||+.+.++ +.++.++|++.|++|+.+. .+|. |++|+|+ ++|.+++||.+|++||++.++
T Consensus 1 ~~--~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~------------~~p~-GkVPvLv~ddG~~L~ES~AIl~YLa~~~p 64 (722)
T PLN02907 1 ME--AKLSFPPDSP-PLAVIAAAKVAGVPLTIDP------------SLKS-GSAPTLLFSSGEKLTGTNVLLRYIARSAS 64 (722)
T ss_pred Ce--EEEEECCCCC-hHHHHHHHHHcCCCcEEee------------cCCC-CCCcEEEECCCCEEECHHHHHHHHHHhCC
Confidence 65 8999998775 7889999999999998864 2588 9999999 588999999999999999998
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhcccccchhhhccCCchHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCChhHHHHHh
Q 027726 80 HKSPLMPSDSYLRSQARFWADYVDKNIYGIGKRIWSGKGEDQEAAKKEMIGFLKNMEAELGDKHFFGGESIGFVDVALVP 159 (219)
Q Consensus 80 ~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~s~aD~~l~~ 159 (219)
+..|+|.++.+++++++|+.+...... ...+.+.++.||.+|++++||+|+++|+||+++++
T Consensus 65 -~~~L~p~d~~erAqV~qWL~~~~~~~~-----------------~~~l~~~L~~LE~~L~~rtYLvGd~lTLADIaL~~ 126 (722)
T PLN02907 65 -LPGFYGQDAFESSQVDEWLDYAPTFSS-----------------GSEFENACEYVDGYLASRTFLVGYSLTIADIAIWS 126 (722)
T ss_pred -CcCCCCCCHHHHHHHHHHHHHHhhccc-----------------HHHHHHHHHHHHHHhccCCeecCCCCCHHHHHHHH
Confidence 678999999999999999998754210 02456788999999999999999999999999999
Q ss_pred hhhhhhhhhhhcCCcccccCchHHHHHHHHhcccc
Q 027726 160 FTTWFYTYETFGNLSVEAECPKLIAWAKRCSQKES 194 (219)
Q Consensus 160 ~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~ 194 (219)
.+..+... .........+|+|.+|++++.++|+
T Consensus 127 ~L~~~~~~--~~~~~~~~~yPnL~RW~erI~arPs 159 (722)
T PLN02907 127 GLAGSGQR--WESLRKSKKYQNLVRWFNSISAEYS 159 (722)
T ss_pred HHHhhhhh--hhcccccccCHHHHHHHHHHHhCCC
Confidence 88654210 1112223789999999999999999
No 24
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.82 E-value=4.1e-20 Score=117.80 Aligned_cols=72 Identities=40% Similarity=0.705 Sum_probs=69.8
Q ss_pred EecccCChhhHHHHHHHHhcCCCcceeecCCCCCchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHHhhcC
Q 027726 7 LLGFWPSSFAMRVKIALAEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYIDEVWH 79 (219)
Q Consensus 7 L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~~~~~ 79 (219)
||+++.||||+|++++|+++||+|+.+.++..++.+++...||. +++|+|++||.+++||.+|++||++.++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~-~~vPvL~~~g~~l~dS~~I~~yL~~~~~ 72 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPK-GKVPVLVDDGEVLTDSAAIIEYLEERYP 72 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTT-SBSSEEEETTEEEESHHHHHHHHHHHST
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhccc-ccceEEEECCEEEeCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999988889999999998 9999999999999999999999999998
No 25
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.80 E-value=2.6e-19 Score=116.58 Aligned_cols=68 Identities=19% Similarity=0.307 Sum_probs=65.4
Q ss_pred cCChhhHHHHHHHHhcCCCcceeecCCCCCchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHHhhcC
Q 027726 11 WPSSFAMRVKIALAEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYIDEVWH 79 (219)
Q Consensus 11 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~~~~~ 79 (219)
..||||+++|++|+++||+|+.+.+++.+++++|.++||. |++|+|+++|.+++||.+|++||+++++
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~-g~vPvL~~~~~~i~eS~~I~eYLde~~~ 87 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPG-TQPPFLLYNGEVKTDNNKIEEFLEETLC 87 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCC-CCCCEEEECCEEecCHHHHHHHHHHHcc
Confidence 3599999999999999999999999999999999999998 9999999999999999999999999988
No 26
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.79 E-value=4.6e-19 Score=112.37 Aligned_cols=73 Identities=32% Similarity=0.462 Sum_probs=69.0
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecCCCCCchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHHhhc
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYIDEVW 78 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~~~~ 78 (219)
|+||+.+.||+|++++++|+++|++|+.+.++..+..+++.+.||. |++|+|+++|..++||.+|++||++++
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPY-GTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 6899999999999999999999999999999988878899999999 999999999999999999999999864
No 27
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.79 E-value=4.2e-19 Score=112.27 Aligned_cols=70 Identities=33% Similarity=0.644 Sum_probs=64.9
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecCCC---CCchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHH
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEENLF---DKSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYID 75 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~ 75 (219)
++||+++.|++|++++++|+++|++|+.+.++.. .+.++|.++||. |++|+|++||.+++||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~-g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPT-GEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 4799999999999999999999999999998874 356789999999 999999999999999999999985
No 28
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.79 E-value=7.9e-19 Score=111.60 Aligned_cols=73 Identities=67% Similarity=1.111 Sum_probs=68.1
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecCCCCCchhhhhhCC-CCCccceEeeCCeeeehhHHHHHHHHhhc
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFDKSPLLLEMNP-VDKKIPVLIHDGKPICESLIIIQYIDEVW 78 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p-~~~~vP~L~~~g~~i~es~~I~~yL~~~~ 78 (219)
|+||+++.||+|++++++|+++|++|+.+.++...+.+++.+.|| . +++|+|+++|.+++||.+|++||++.+
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~-~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVH-KKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCC-CCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 689999999999999999999999999999988877889999999 5 899999999999999999999999864
No 29
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.78 E-value=9.5e-19 Score=112.01 Aligned_cols=74 Identities=23% Similarity=0.236 Sum_probs=66.1
Q ss_pred ceEEecccCChhhHHHHHHHHhcCCCcceeecCCCC-CchhhhhhCCCCCccceEee--CCeeeehhHHHHHHHHhhc
Q 027726 4 NVVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFD-KSPLLLEMNPVDKKIPVLIH--DGKPICESLIIIQYIDEVW 78 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~--~g~~i~es~~I~~yL~~~~ 78 (219)
+++||+++.||+|++++++|.++||+|+.+.++..+ ..+++.+.||. +++|+|++ +|.+++||.+|++||++++
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~-~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGK-VQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCC-CcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 389999999999999999999999999999887543 45788999998 99999996 4689999999999999874
No 30
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.76 E-value=2.5e-18 Score=108.37 Aligned_cols=69 Identities=35% Similarity=0.539 Sum_probs=64.8
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecCCCCCchhhhhhCCCCCccceEee-CCeeeehhHHHHHHH
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLIH-DGKPICESLIIIQYI 74 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~-~g~~i~es~~I~~yL 74 (219)
++||+++.||+|++++++|+++|++|+.+.++..++.+++.++||. +++|+|++ ||..++||.+|++|+
T Consensus 1 ~~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~-~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 1 PILYSFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPK-GTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred CEEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCC-CCCCEEEECCCcEEecHHHHHHhh
Confidence 4799999999999999999999999999999988778899999998 99999997 599999999999996
No 31
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.76 E-value=3.4e-18 Score=108.65 Aligned_cols=71 Identities=28% Similarity=0.396 Sum_probs=65.5
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecCCCC---CchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHHh
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFD---KSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYIDE 76 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~~ 76 (219)
++||+++.||+|++++++|+++|++|+.+.++..+ ..+++.++||. +++|+|+++|.+++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQ-HTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcC-CCCCEEEECCEEEEcHHHHHHHHhC
Confidence 58999999999999999999999999999998653 45899999999 9999999999999999999999964
No 32
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.75 E-value=6.8e-18 Score=107.84 Aligned_cols=72 Identities=36% Similarity=0.459 Sum_probs=66.3
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecCCC---CCchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHHhh
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEENLF---DKSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYIDEV 77 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~~~ 77 (219)
++||+.+.||+|++++++|+++|++|+.+.++.. ...+++.++||. +++|+|+++|.+++||.+|++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~-~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPF-GQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 7999999999999999999999999999988865 356789999998 99999999999999999999999863
No 33
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.75 E-value=6.4e-18 Score=111.17 Aligned_cols=73 Identities=40% Similarity=0.531 Sum_probs=67.7
Q ss_pred CcceEEecccCChhhHHHHHHHHhcCCCcceeecCCCCCchhhhhhCCCCCccceEeeC-CeeeehhHHHHHHHH
Q 027726 2 AENVVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLIHD-GKPICESLIIIQYID 75 (219)
Q Consensus 2 ~~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~-g~~i~es~~I~~yL~ 75 (219)
+++++||+.+.||+|++++++|+++|++|+.+.++.....+++.+.||. +++|+|+++ |..++||.+|++||+
T Consensus 16 ~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~-~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 16 PGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQ-GKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred CCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCC-CCcCEEEECCCCEEECHHHHHHhhC
Confidence 3679999999999999999999999999999999887777789999998 999999976 899999999999985
No 34
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.75 E-value=9.5e-18 Score=107.16 Aligned_cols=73 Identities=23% Similarity=0.320 Sum_probs=66.6
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecCCCC---CchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHHhhc
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFD---KSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYIDEVW 78 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~~~~ 78 (219)
++||+++.|++|++++++|+++|++|+.+.++..+ ..+++.+.||. +++|+|+++|.+++||.+|++||++++
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPF-GKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcC-CCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 57999999999999999999999999999998753 34688999999 999999999999999999999999864
No 35
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=99.75 E-value=1.9e-17 Score=116.12 Aligned_cols=122 Identities=43% Similarity=0.833 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHhcccccchhhhccCCchHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCChhHHHHHhhhhhhhhhhh
Q 027726 90 YLRSQARFWADYVDKNIYGIGKRIWSGKGEDQEAAKKEMIGFLKNMEAELGDKHFFGGESIGFVDVALVPFTTWFYTYET 169 (219)
Q Consensus 90 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~ 169 (219)
.+++++++|+.+.+..+.+.+...+...+...+.....+.+.++.+|++|++++|++|+++|+||+++++.+.++.....
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~~~~~~~~~~~~ 81 (126)
T cd03185 2 YERAVARFWAAFIDDKLFPAGRKVLAAKGEEREKAKEEALEALKVLEEELGGKPFFGGDTIGYVDIALGSFLGWFRAYEE 81 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 46889999999998888777665555444556678889999999999999989999999999999999999988765433
Q ss_pred hcCCcc--cccCchHHHHHHHHhcccchhccCCChhhHHHHHHH
Q 027726 170 FGNLSV--EAECPKLIAWAKRCSQKESVSASLADPHDIYDFALG 211 (219)
Q Consensus 170 ~~~~~~--~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (219)
..+... ...+|++.+|++++.++|+++++++..+...+++++
T Consensus 82 ~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~ 125 (126)
T cd03185 82 VGGVKLLDEEKTPLLAAWAERFLELEAVKEVLPDRDKLVEFAKA 125 (126)
T ss_pred HcCccccCcccCchHHHHHHHHHhccHHHHhCCCHHHHHHHHHh
Confidence 333331 367999999999999999999999998887776554
No 36
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.74 E-value=3.8e-18 Score=108.04 Aligned_cols=72 Identities=17% Similarity=0.190 Sum_probs=66.1
Q ss_pred ceEEecccCChhhHHHHHHHHhcCCCcceeecCCCCCchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHHh
Q 027726 4 NVVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYIDE 76 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~~ 76 (219)
.++||+++.|++|++++++|.++|++|+.+.++..+..+++..+||. +++|+|+++|.+++||.+|++||++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~ 72 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLF-GQLPCFKDGDLTLVQSNAILRHLGR 72 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCC-CCCCEEEECCEEEEcHHHHHHHHhc
Confidence 37999999999999999999999999999999875555678899998 9999999999999999999999975
No 37
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=4.5e-17 Score=123.32 Aligned_cols=198 Identities=17% Similarity=0.190 Sum_probs=148.4
Q ss_pred cceEEecccCChhhHHHHHHHHhcCCC--cceeecCC--CCCch----------------------hhhhhCCCC---Cc
Q 027726 3 ENVVLLGFWPSSFAMRVKIALAEKGIK--YESKEENL--FDKSP----------------------LLLEMNPVD---KK 53 (219)
Q Consensus 3 ~~~~L~~~~~s~~~~~v~~~l~~~gi~--~~~~~v~~--~~~~~----------------------~~~~~~p~~---~~ 53 (219)
++..||.+-.|||++|..++-+.||+. ..+..|++ .+... -|..-.|.| -+
T Consensus 50 GRYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvT 129 (324)
T COG0435 50 GRYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVT 129 (324)
T ss_pred CeEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCcee
Confidence 578999999999999999999999995 22222221 11111 122223311 37
Q ss_pred cceEeeC--Cee-eehhHHHHHHHHhhcC----CCCCCCCCCHHHHHHHHHHHHHHhcccccchhhh-ccCCchHHHHHH
Q 027726 54 IPVLIHD--GKP-ICESLIIIQYIDEVWH----HKSPLMPSDSYLRSQARFWADYVDKNIYGIGKRI-WSGKGEDQEAAK 125 (219)
Q Consensus 54 vP~L~~~--g~~-i~es~~I~~yL~~~~~----~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 125 (219)
||||.|. .++ -.||..|++-+...+. ....++|. ..+.+++.+..++.+.+...+.+. |...+++-++..
T Consensus 130 VPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~--~Lr~eId~~n~~Iy~~vNNGVYk~GFA~tq~aYeea~ 207 (324)
T COG0435 130 VPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPE--ALRTEIDELNKWIYDTVNNGVYKAGFATTQEAYEEAV 207 (324)
T ss_pred EEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCH--HHHHHHHHHHhhhcccccCceeeecccchHHHHHHHH
Confidence 9999973 344 4599999999987654 24667874 468899999999888876655443 444577888999
Q ss_pred HHHHHHHHHHHHHhCCCCcccCCCCChhHHHHHhhhhhhhhhh-hhcCCccc--ccCchHHHHHHHHhcccchhccCCCh
Q 027726 126 KEMIGFLKNMEAELGDKHFFGGESIGFVDVALVPFTTWFYTYE-TFGNLSVE--AECPKLIAWAKRCSQKESVSASLADP 202 (219)
Q Consensus 126 ~~l~~~l~~le~~L~~~~~l~G~~~s~aD~~l~~~l~~~~~~~-~~~~~~~~--~~~p~l~~~~~~~~~~~~~~~~~~~~ 202 (219)
..+-+.|+.||..|+++.||+|+++|.||+-+++.|-++..+- ....+++. .+||+|..|...+.+.|.|++|..-.
T Consensus 208 ~~lF~~Ld~lE~~L~~~ryl~Gd~lTEAD~RLftTlvRFD~VYvgHFKCN~~rI~dypnL~~yLr~LYq~pg~~~T~df~ 287 (324)
T COG0435 208 KKLFEALDKLEQILSERRYLTGDQLTEADIRLFTTLVRFDPVYVGHFKCNLRRIRDYPNLWGYLRDLYQLPGFAETVDFD 287 (324)
T ss_pred HHHHHHHHHHHHHhhcCeeeccccchHhhhhhhheeEeecceEEeeeecccchhhcCchHHHHHHHHhcCcccccccchh
Confidence 9999999999999999999999999999999999998776542 22333432 67999999999999999999998443
No 38
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.74 E-value=1.5e-17 Score=107.56 Aligned_cols=74 Identities=27% Similarity=0.461 Sum_probs=67.1
Q ss_pred ceEEecccCChhhHHHHHHHHhcCCCcceeecCCC---CCchhhhhhCCCCCccceEeeC---CeeeehhHHHHHHHHhh
Q 027726 4 NVVLLGFWPSSFAMRVKIALAEKGIKYESKEENLF---DKSPLLLEMNPVDKKIPVLIHD---GKPICESLIIIQYIDEV 77 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~---g~~i~es~~I~~yL~~~ 77 (219)
+++||+++. |+|++++++|+++|++|+.+.++.. ...++|.++||. +++|+|+++ |..|+||.+|++||+++
T Consensus 1 ~~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~g~~l~eS~aI~~yL~~~ 78 (81)
T cd03048 1 MITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPN-GRIPAIVDHNGTPLTVFESGAILLYLAEK 78 (81)
T ss_pred CeEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcC-CCCCEEEeCCCCceEEEcHHHHHHHHHHH
Confidence 389999985 9999999999999999999999864 456889999998 999999986 88999999999999998
Q ss_pred cC
Q 027726 78 WH 79 (219)
Q Consensus 78 ~~ 79 (219)
++
T Consensus 79 ~~ 80 (81)
T cd03048 79 YD 80 (81)
T ss_pred hC
Confidence 86
No 39
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.74 E-value=7.2e-17 Score=121.76 Aligned_cols=174 Identities=21% Similarity=0.314 Sum_probs=128.4
Q ss_pred eEEecccC-------ChhhHHHHHHHHhcCCCcceeecCCCCCchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHHhh
Q 027726 5 VVLLGFWP-------SSFAMRVKIALAEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYIDEV 77 (219)
Q Consensus 5 ~~L~~~~~-------s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~~~ 77 (219)
+-||.++- ||||+|+..+|+..+|||+.+...+ ...++. |++|.++-||..++||.-|..+|.+.
T Consensus 46 VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~-------~~rSr~-G~lPFIELNGe~iaDS~~I~~~L~~h 117 (281)
T KOG4244|consen 46 VYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSL-------KRRSRN-GTLPFIELNGEHIADSDLIEDRLRKH 117 (281)
T ss_pred EEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccc-------eeeccC-CCcceEEeCCeeccccHHHHHHHHHH
Confidence 45666654 9999999999999999999875543 234566 89999999999999999999999998
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHhcccccchhh----------------------------hc-----cCC-------
Q 027726 78 WHHKSPLMPSDSYLRSQARFWADYVDKNIYGIGKR----------------------------IW-----SGK------- 117 (219)
Q Consensus 78 ~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~----------------------------~~-----~~~------- 117 (219)
+.-+.. + ++.++++.+.+...++.++.-.... ++ ..+
T Consensus 118 f~~~~~-L--~~e~~a~s~Al~rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~r~~g 194 (281)
T KOG4244|consen 118 FKIPDD-L--SAEQRAQSRALSRMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYKRSTG 194 (281)
T ss_pred cCCCCC-C--CHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHhhc
Confidence 882222 3 4556666666666555444222110 00 000
Q ss_pred ---chHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCChhHHHHHhhhhhhhhhhhhcCC---cccccCchHHHHHHHHhc
Q 027726 118 ---GEDQEAAKKEMIGFLKNMEAELGDKHFFGGESIGFVDVALVPFTTWFYTYETFGNL---SVEAECPKLIAWAKRCSQ 191 (219)
Q Consensus 118 ---~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~---~~~~~~p~l~~~~~~~~~ 191 (219)
.-..++..+.+++.|+.++..|++++||.|+++|-+|+++++.|..+.. ++... .+.+++|+|..|++|+++
T Consensus 195 ~IG~f~~~Ei~ell~rDlr~i~~~Lg~KkflfGdkit~~DatvFgqLa~v~Y--P~~~~i~d~le~d~p~l~eYceRIr~ 272 (281)
T KOG4244|consen 195 AIGDFESAEIDELLHRDLRAISDYLGDKKFLFGDKITPADATVFGQLAQVYY--PFRSHISDLLEGDFPNLLEYCERIRK 272 (281)
T ss_pred cccCcCHHHHHHHHHHHHHHHHHHhCCCccccCCCCCcceeeehhhhhheec--cCCCcHHHHHhhhchHHHHHHHHHHH
Confidence 0123557778899999999999999999999999999999999987764 11111 124899999999999985
No 40
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.72 E-value=2.2e-17 Score=104.54 Aligned_cols=70 Identities=36% Similarity=0.575 Sum_probs=64.6
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecCCC---CCchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHH
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEENLF---DKSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYID 75 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~ 75 (219)
++||+++.||+|++++++|+++|++|+.+.++.. .+.+++.+.||. +++|+|+++|.+++||.+|++||.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPN-GEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999864 356889999998 999999999999999999999984
No 41
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.72 E-value=1.1e-17 Score=105.79 Aligned_cols=71 Identities=25% Similarity=0.344 Sum_probs=63.8
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecCCCC-CchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHHh
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFD-KSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYIDE 76 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~~ 76 (219)
++||+++.|++|+++|++|+++|++|+.+.++..+ ...++.++||. +++|+|+++|.+++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~-~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPF-GQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcC-CCCCEEEECCEEEEecHHHHHHhhC
Confidence 58999999999999999999999999999988753 23447889999 9999999999999999999999974
No 42
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.72 E-value=1.1e-16 Score=121.49 Aligned_cols=182 Identities=18% Similarity=0.345 Sum_probs=126.8
Q ss_pred ceEEecccCChhhHHHHHHHHhcCCCcceeecCCCCCchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHHh-------
Q 027726 4 NVVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYIDE------- 76 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~~------- 76 (219)
+++||.+..||||.|||.+|-+.||+|++++|++-.+. ++ +.+. |.+||+|...|..+.||.+|+.-|..
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r~-eI-k~Ss-ykKVPil~~~Geqm~dSsvIIs~laTyLq~~~q 166 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLRQ-EI-KWSS-YKKVPILLIRGEQMVDSSVIISLLATYLQDKRQ 166 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhhh-hc-cccc-cccccEEEeccceechhHHHHHHHHHHhccCCC
Confidence 58999999999999999999999999999999977432 21 2334 48999999877789999999988733
Q ss_pred -------hcCC-------CCCC--C------------C-CCHHHHHHHHHHHHHHhcccccchhhh-cc-----------
Q 027726 77 -------VWHH-------KSPL--M------------P-SDSYLRSQARFWADYVDKNIYGIGKRI-WS----------- 115 (219)
Q Consensus 77 -------~~~~-------~~~l--~------------p-~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~----------- 115 (219)
.||. +... + | .+.......+.|..|+++.+.-.+..- +.
T Consensus 167 ~l~eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletFew 246 (370)
T KOG3029|consen 167 DLGEIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETFEW 246 (370)
T ss_pred CHHHHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHHHH
Confidence 2230 0000 0 0 012223345667777777653332210 00
Q ss_pred ----------------------------------CCchHHHHHHHHHHHHHHHHHHHh-CCCCcccCCCCChhHHHHHhh
Q 027726 116 ----------------------------------GKGEDQEAAKKEMIGFLKNMEAEL-GDKHFFGGESIGFVDVALVPF 160 (219)
Q Consensus 116 ----------------------------------~~~~~~~~~~~~l~~~l~~le~~L-~~~~~l~G~~~s~aD~~l~~~ 160 (219)
.+.......++.+-..++.+-..| .+++|+.|++|++||+.++++
T Consensus 247 f~q~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgknr~flGG~kPnLaDLsvfGv 326 (370)
T KOG3029|consen 247 FSQAGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGKNRPFLGGKKPNLADLSVFGV 326 (370)
T ss_pred HHHcCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCCCCCccCCCCCchhhhhhhhh
Confidence 001123446677778888888888 468999999999999999999
Q ss_pred hhhhhhhhhhcCCcccccCchHHHHHHHHhc
Q 027726 161 TTWFYTYETFGNLSVEAECPKLIAWAKRCSQ 191 (219)
Q Consensus 161 l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 191 (219)
|+.+.....+.+ .-+..+|..|+-++++
T Consensus 327 l~sm~gc~afkd---~~q~t~I~eW~~rmea 354 (370)
T KOG3029|consen 327 LRSMEGCQAFKD---CLQNTSIGEWYYRMEA 354 (370)
T ss_pred hhHhhhhhHHHH---HHhcchHHHHHHHHHH
Confidence 998887543322 2467999999999985
No 43
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.72 E-value=2.2e-17 Score=104.64 Aligned_cols=70 Identities=33% Similarity=0.487 Sum_probs=65.1
Q ss_pred eEEecccCChhhHHHHHHHHh--cCCCcceeecCCCCCchhhhhhCCCCCccceEe-eCCeeeehhHHHHHHHH
Q 027726 5 VVLLGFWPSSFAMRVKIALAE--KGIKYESKEENLFDKSPLLLEMNPVDKKIPVLI-HDGKPICESLIIIQYID 75 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~--~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~-~~g~~i~es~~I~~yL~ 75 (219)
++||+++.||+|++++++|++ +|++|+.+.++...+.+++.+.||. +++|+|+ +||..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPL-GKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCC-CCCCEEEECCCCEEECHHHHHhhhC
Confidence 589999999999999999999 8999999999887778899999998 9999998 58899999999999985
No 44
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.72 E-value=2.8e-17 Score=104.67 Aligned_cols=70 Identities=23% Similarity=0.300 Sum_probs=65.1
Q ss_pred EEecccCChhhHHHHHHHHhcCCCcceeecCCC--CCchhhhhhCCCCCccceEee-CCeeeehhHHHHHHHHh
Q 027726 6 VLLGFWPSSFAMRVKIALAEKGIKYESKEENLF--DKSPLLLEMNPVDKKIPVLIH-DGKPICESLIIIQYIDE 76 (219)
Q Consensus 6 ~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~--~~~~~~~~~~p~~~~vP~L~~-~g~~i~es~~I~~yL~~ 76 (219)
+||+++.||+|++++++|+++|++|+.+.++.. .+.++|.++||. +++|+|++ +|.+++||.+|++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~-~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPL-GKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCC-CCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 799999999999999999999999999999876 467899999999 99999996 68999999999999975
No 45
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.71 E-value=2.9e-17 Score=103.52 Aligned_cols=70 Identities=27% Similarity=0.353 Sum_probs=61.3
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecCCCCCchhhhhhCCCCCccceEeeC-CeeeehhHHHHHHHHh
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLIHD-GKPICESLIIIQYIDE 76 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~-g~~i~es~~I~~yL~~ 76 (219)
|+||+++.||+|+|+|++|+++|++|+.+.++... .....+.+|. +++|+|+++ |..++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~-~~~~~~~~~~-~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDD-EATPIRMIGA-KQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCc-hHHHHHhcCC-CccCEEEeCCCeEeehHHHHHHHHhC
Confidence 57999999999999999999999999998887543 2344578998 999999975 8999999999999974
No 46
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.71 E-value=3.8e-17 Score=103.54 Aligned_cols=70 Identities=29% Similarity=0.382 Sum_probs=64.0
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecCCC---CCchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHH
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEENLF---DKSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYID 75 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~ 75 (219)
++||+++.||++++++++|+++|++|+.+.++.. ...+++.++||. +++|+|+++|.+|+||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~-~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPN-GRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCC-CCCCEEEECCEEEECHHHHHHHhC
Confidence 5899999999999999999999999999988754 346889999999 999999999999999999999984
No 47
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.71 E-value=3.7e-17 Score=103.77 Aligned_cols=70 Identities=37% Similarity=0.504 Sum_probs=63.6
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecCCC---CCchhhhhhCCCCCccceEe-eCCeeeehhHHHHHHHH
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEENLF---DKSPLLLEMNPVDKKIPVLI-HDGKPICESLIIIQYID 75 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~-~~g~~i~es~~I~~yL~ 75 (219)
|+||+.+.||+|++++++|.++|++|+.+.++.. ...+++.+.||. +++|+|+ ++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPA-GTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCC-CCCCEEEeCCCCEEecHHHHHHHhC
Confidence 5899999999999999999999999999998864 346789999998 9999999 47889999999999985
No 48
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.71 E-value=6.7e-17 Score=103.17 Aligned_cols=73 Identities=30% Similarity=0.413 Sum_probs=66.2
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecCCC---CCchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHHhhcC
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEENLF---DKSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYIDEVWH 79 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~~~~~ 79 (219)
++||+++. +++++++++|+++|++|+.+.++.. .+.+++.+.||. +++|+|+++|.+++||.+|++||++.++
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPL-GKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCC-CCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 58999875 6899999999999999999998864 467889999998 9999999999999999999999999864
No 49
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.70 E-value=8.1e-17 Score=103.09 Aligned_cols=73 Identities=29% Similarity=0.420 Sum_probs=65.4
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecCCCC---CchhhhhhCCCCCccceEeeC-CeeeehhHHHHHHHHhhcC
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFD---KSPLLLEMNPVDKKIPVLIHD-GKPICESLIIIQYIDEVWH 79 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~vP~L~~~-g~~i~es~~I~~yL~~~~~ 79 (219)
++||+++.+ .+++++++|+++|++|+.+.++..+ +.+++.++||. +++|+|+++ |.+++||.+|++||++.+|
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~-~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPK-GQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCC-CCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 589999866 5999999999999999999888763 47899999998 999999976 8999999999999999875
No 50
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.70 E-value=6.9e-17 Score=102.29 Aligned_cols=70 Identities=40% Similarity=0.659 Sum_probs=64.7
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecCCC---CCchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHH
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEENLF---DKSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYID 75 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~ 75 (219)
|+||++..|++|++++++|+++|++|+.+.++.. ...+++.+.||. +++|+|+++|.+++||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQ-GLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999874 356889999998 999999999999999999999985
No 51
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.70 E-value=6.8e-17 Score=103.45 Aligned_cols=72 Identities=25% Similarity=0.440 Sum_probs=62.6
Q ss_pred ceEEecccCChhhHHHHHHHHhcCCCcceeecCCCCCchhhhhhCCCCCccceEeeC----CeeeehhHHHHHHHHhhc
Q 027726 4 NVVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLIHD----GKPICESLIIIQYIDEVW 78 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~----g~~i~es~~I~~yL~~~~ 78 (219)
+++||+.+.||+|++++++|.++|++|+.+.++.... .+ ...||. +++|+|+++ |.+++||.+|++||++..
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~~-~~-~~~~~~-~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVSR-KE-IKWSSY-KKVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchhH-HH-HHHhCC-CccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 5899999999999999999999999999998876442 23 356998 999999954 789999999999999874
No 52
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=3.4e-16 Score=111.08 Aligned_cols=178 Identities=18% Similarity=0.257 Sum_probs=129.0
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecCCCCCchhhhhhCCCCCccceEe-eCCeeeehhHHHHHHHHhhcCCCCC
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLI-HDGKPICESLIIIQYIDEVWHHKSP 83 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~-~~g~~i~es~~I~~yL~~~~~~~~~ 83 (219)
|+||-+..||||-|+|+++-.+|||++.....-++...-.+-+. . .+||+|+ +||..+.||..|+.|+++..+ .+
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~rmiG-~-KqVPiL~Kedg~~m~ESlDIV~y~d~~~~--~~ 76 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPIRMIG-Q-KQVPILQKEDGRAMPESLDIVHYVDELDG--KP 76 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccChhhhhc-c-cccceEEccccccchhhhHHHHHHHHhcC--ch
Confidence 68999999999999999999999999987776554333333343 4 7999999 789999999999999999987 34
Q ss_pred CCCCCHHHHHHHHHHHHHHhcccccchhhhcc-----------------CCc-----------hHHHHHHHHHHHHHHHH
Q 027726 84 LMPSDSYLRSQARFWADYVDKNIYGIGKRIWS-----------------GKG-----------EDQEAAKKEMIGFLKNM 135 (219)
Q Consensus 84 l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-----------------~~~-----------~~~~~~~~~l~~~l~~l 135 (219)
+.- ...+..+..|+..+...........+. .+. ...+....++...++.+
T Consensus 77 ~lt--~~~~pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~~dl~~l 154 (215)
T COG2999 77 LLT--GKVRPAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQADLRAL 154 (215)
T ss_pred hhc--cCcCHHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHHHHHHHH
Confidence 332 122444566666666555444333221 110 12456778888999999
Q ss_pred HHHhCCCCcccCCCCChhHHHHHhhhhhhhhhhhhcCCcccccCchHHHHHHHHhcccch
Q 027726 136 EAELGDKHFFGGESIGFVDVALVPFTTWFYTYETFGNLSVEAECPKLIAWAKRCSQKESV 195 (219)
Q Consensus 136 e~~L~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~ 195 (219)
+..+.+..=+- ..+|.-|+.+++.|+.+.. ..+..++ .++..|++++.+...+
T Consensus 155 ~~Li~~~s~~n-~~l~~ddi~vFplLRnlt~---v~gi~wp---s~v~dy~~~msektqV 207 (215)
T COG2999 155 DKLIVGPSAVN-GELSEDDILVFPLLRNLTL---VAGIQWP---SRVADYRDNMSEKTQV 207 (215)
T ss_pred HHHhcCcchhc-cccchhhhhhhHHhcccee---cccCCCc---HHHHHHHHHHHHhhCc
Confidence 99986644233 4599999999999988776 5566664 6799999999875443
No 53
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.69 E-value=2.2e-16 Score=112.92 Aligned_cols=125 Identities=19% Similarity=0.167 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHhcccccchhhhc-cCCchHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCChhHHHHHhhhhhhhhhh
Q 027726 90 YLRSQARFWADYVDKNIYGIGKRIW-SGKGEDQEAAKKEMIGFLKNMEAELGDKHFFGGESIGFVDVALVPFTTWFYTYE 168 (219)
Q Consensus 90 ~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~s~aD~~l~~~l~~~~~~~ 168 (219)
..++.+++|++|....+.+.+.... ..+++..+....++.+.|..+|++|++++|++|+++|+||+++++.+.++....
T Consensus 3 ~~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~LE~~L~~~~yl~Gd~~TlADi~l~~~l~~~~~~~ 82 (142)
T cd03190 3 ELRSEIDELNEWIYDNINNGVYKAGFATTQEAYDEAVDELFEALDRLEELLSDRRYLLGDRLTEADIRLFTTLIRFDAVY 82 (142)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHccCCeeeCCCccHHHHHHHHHHHHHHHHh
Confidence 4578899999999999887766653 344566778888999999999999998999999999999999999987654321
Q ss_pred -hhc--CCcccccCchHHHHHHHHhcccchhccCCChhhHHHHHHHHHH
Q 027726 169 -TFG--NLSVEAECPKLIAWAKRCSQKESVSASLADPHDIYDFALGLRM 214 (219)
Q Consensus 169 -~~~--~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (219)
... +......+|+|.+|++++.++|++++++...+.+.+++++++.
T Consensus 83 ~~~~~~~~~~~~~~P~L~~w~~r~~~~P~~k~~~~~~~~~~~~~~~~~~ 131 (142)
T cd03190 83 VQHFKCNLKRIRDYPNLWNYLRRLYQNPGVAETTNFDHIKQHYYGSHFP 131 (142)
T ss_pred hhhcccccchhhhCchHHHHHHHHhcCchHhhhcCHHHHHHHHHhhcCC
Confidence 011 1122368999999999999999999999988888888888754
No 54
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.69 E-value=2.8e-16 Score=107.01 Aligned_cols=105 Identities=21% Similarity=0.341 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHhcccccchhhhccCCchHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCChhHHHHHhhhhhhhhhhh
Q 027726 90 YLRSQARFWADYVDKNIYGIGKRIWSGKGEDQEAAKKEMIGFLKNMEAELGDKHFFGGESIGFVDVALVPFTTWFYTYET 169 (219)
Q Consensus 90 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~ 169 (219)
.++++++.|+.+++..+.+.+...+..++...+.....+.+.+..+|.+|++++|++|+++|+||+++++.+.++..
T Consensus 2 ~~ra~~r~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~~~--- 78 (107)
T cd03186 2 VARARSRLLMHRIEQDWYPLVDTIEKGRKKEAEKARKELRESLLALAPVFAHKPYFMSEEFSLVDCALAPLLWRLPA--- 78 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCcHHHHHHHHHHHHHHH---
Confidence 46899999999999988877666554445556778889999999999999999999999999999999999865542
Q ss_pred hcCCcccccCchHHHHHHHHhcccchhcc
Q 027726 170 FGNLSVEAECPKLIAWAKRCSQKESVSAS 198 (219)
Q Consensus 170 ~~~~~~~~~~p~l~~~~~~~~~~~~~~~~ 198 (219)
.+..+...+|++++|++++.++|+++++
T Consensus 79 -~~~~~~~~~p~l~~w~~~~~~rpa~~~~ 106 (107)
T cd03186 79 -LGIELPKQAKPLKDYMERVFARDSFQKS 106 (107)
T ss_pred -cCCCCcccchHHHHHHHHHHCCHHHHHh
Confidence 2333335799999999999999999875
No 55
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.68 E-value=1.2e-16 Score=100.25 Aligned_cols=65 Identities=51% Similarity=0.758 Sum_probs=56.2
Q ss_pred CChhhHHHHHHHHhcCCCcceeecCC----CCCchhhhhhCCCCCccceEee-CCeeeehhHHHHHHHHhh
Q 027726 12 PSSFAMRVKIALAEKGIKYESKEENL----FDKSPLLLEMNPVDKKIPVLIH-DGKPICESLIIIQYIDEV 77 (219)
Q Consensus 12 ~s~~~~~v~~~l~~~gi~~~~~~v~~----~~~~~~~~~~~p~~~~vP~L~~-~g~~i~es~~I~~yL~~~ 77 (219)
.|||++|++++|+++|++|+...+.. ..++++|.++||. ++||+|++ +|.+++||.+|++||++.
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~-~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPR-GKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT--SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcC-eEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 48999999999999999999888843 2456899999998 99999997 889999999999999873
No 56
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.68 E-value=1.8e-16 Score=100.90 Aligned_cols=67 Identities=31% Similarity=0.502 Sum_probs=60.9
Q ss_pred eEEeccc-------CChhhHHHHHHHHhcCCCcceeecCCCCCchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHHhh
Q 027726 5 VVLLGFW-------PSSFAMRVKIALAEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYIDEV 77 (219)
Q Consensus 5 ~~L~~~~-------~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~~~ 77 (219)
++||+++ .||+|++++++|+++|++|+.+.++. .+.||. +++|+|+++|.+++||.+|++||+++
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~-------~~~~p~-g~vPvl~~~g~~l~eS~~I~~yL~~~ 73 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL-------AKRSPK-GKLPFIELNGEKIADSELIIDHLEEK 73 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc-------ccCCCC-CCCCEEEECCEEEcCHHHHHHHHHHH
Confidence 7899998 58999999999999999999987764 268898 99999999999999999999999998
Q ss_pred cC
Q 027726 78 WH 79 (219)
Q Consensus 78 ~~ 79 (219)
++
T Consensus 74 ~~ 75 (75)
T cd03080 74 YG 75 (75)
T ss_pred cC
Confidence 74
No 57
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.66 E-value=5e-16 Score=99.76 Aligned_cols=72 Identities=21% Similarity=0.278 Sum_probs=62.2
Q ss_pred ceEEecccCChhhHHHHHHHHhcCCCcceeecCCCCCchhhhhh-----CCCCCccceEeeCCeeeehhHHHHHHHHhhc
Q 027726 4 NVVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFDKSPLLLEM-----NPVDKKIPVLIHDGKPICESLIIIQYIDEVW 78 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~-----~p~~~~vP~L~~~g~~i~es~~I~~yL~~~~ 78 (219)
+++||+++.++.+++++++|+++|++|+.+.++.. +++.+. .|. +++|+|++||.+++||.||++||.+++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~---~~~~~~~~~~~~~~-g~vP~L~~~g~~l~ES~AI~~YL~~~~ 76 (79)
T cd03077 1 KPVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA---EDLEKLKKDGSLMF-QQVPMVEIDGMKLVQTRAILNYIAGKY 76 (79)
T ss_pred CCEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH---HHHHhhccccCCCC-CCCCEEEECCEEEeeHHHHHHHHHHHc
Confidence 46899999999999999999999999999988753 233333 357 899999999999999999999999988
Q ss_pred C
Q 027726 79 H 79 (219)
Q Consensus 79 ~ 79 (219)
+
T Consensus 77 ~ 77 (79)
T cd03077 77 N 77 (79)
T ss_pred C
Confidence 7
No 58
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.66 E-value=4e-16 Score=100.89 Aligned_cols=73 Identities=23% Similarity=0.250 Sum_probs=62.1
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecCCCCC----chhhhh-h----CCCCCccceEeeCCeeeehhHHHHHHHH
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFDK----SPLLLE-M----NPVDKKIPVLIHDGKPICESLIIIQYID 75 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~----~~~~~~-~----~p~~~~vP~L~~~g~~i~es~~I~~yL~ 75 (219)
.+||++..++.|++++++|+++|++|+.+.++.... .+++.. . +|. +++|+|++||.+++||.||++||.
T Consensus 1 ~~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~-g~vP~L~~~g~~l~ES~AIl~YLa 79 (82)
T cd03075 1 PTLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDF-PNLPYYIDGDVKLTQSNAILRYIA 79 (82)
T ss_pred CEEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcC-CCCCEEEECCEEEeehHHHHHHHh
Confidence 479999999999999999999999999999987642 234432 2 298 999999999999999999999998
Q ss_pred hhc
Q 027726 76 EVW 78 (219)
Q Consensus 76 ~~~ 78 (219)
+++
T Consensus 80 ~~~ 82 (82)
T cd03075 80 RKH 82 (82)
T ss_pred hcC
Confidence 764
No 59
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.65 E-value=1.1e-15 Score=105.42 Aligned_cols=110 Identities=19% Similarity=0.246 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHHHHhcccccchhhhccCC---chHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCChhHHHHHhhhhhh
Q 027726 88 DSYLRSQARFWADYVDKNIYGIGKRIWSGK---GEDQEAAKKEMIGFLKNMEAELGDKHFFGGESIGFVDVALVPFTTWF 164 (219)
Q Consensus 88 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~s~aD~~l~~~l~~~ 164 (219)
++..++.+++|+.+.+..+.+.+....... .+..+....++.+.++.+|++|++++|++|+++|+||+++++.+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~le~~L~~~~yl~Gd~~tlADi~l~~~l~~~ 82 (115)
T cd03196 3 DPAALKEMLALIAENDNEFKHHLDRYKYADRYPEESEEEYRQQAEAFLKDLEARLQQHSYLLGDKPSLADWAIFPFVRQF 82 (115)
T ss_pred chHHHHHHHHHHHHcchhhHHHHHhccchhhcCcccHHHHHHHHHHHHHHHHHHHccCCccCCCCccHHHHHHHHHHHHH
Confidence 688999999999999999887777643221 22477888999999999999999999999999999999999988765
Q ss_pred hhhhhhcCCcccccCchHHHHHHHHhcccchhccC
Q 027726 165 YTYETFGNLSVEAECPKLIAWAKRCSQKESVSASL 199 (219)
Q Consensus 165 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~ 199 (219)
.... ..... ..++|+|.+|++++.++|+|++++
T Consensus 83 ~~~~-~~~~~-~~~~P~L~~w~~r~~~rpa~~~~~ 115 (115)
T cd03196 83 AHVD-PKWFD-QSPYPRLRRWLNGFLASPLFSKIM 115 (115)
T ss_pred HHhh-hcccC-cccCHHHHHHHHHHHcChHHHhhC
Confidence 5321 11111 278999999999999999999863
No 60
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=99.65 E-value=1e-15 Score=107.06 Aligned_cols=118 Identities=24% Similarity=0.338 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHhcccccchhhhccCCchHHHHHHHHHHHHHHHHHHHhCC--CCcccCCCCChhHHHHHhhhhhhhhhh
Q 027726 91 LRSQARFWADYVDKNIYGIGKRIWSGKGEDQEAAKKEMIGFLKNMEAELGD--KHFFGGESIGFVDVALVPFTTWFYTYE 168 (219)
Q Consensus 91 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~--~~~l~G~~~s~aD~~l~~~l~~~~~~~ 168 (219)
++++.+.|.++++.. .+.+...+.. ++......+.+.+.+..+|+.|++ ++|++|+++|+||+++++.+.++..++
T Consensus 2 ~ra~~r~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~~~~~~~~~ 79 (124)
T cd03184 2 EKAQQKLLLERFSKV-VSAFYKLLGA-PSDREEKKAELRSALENLEEELTKRGTPFFGGDSPGMVDYMIWPWFERLEALK 79 (124)
T ss_pred hHHHHHHHHHHHhhh-hHHHHHHHhc-cccchhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccHHHHHhhHHHHHHHHHH
Confidence 488899999998744 3333344333 555678888999999999999975 899999999999999999998877654
Q ss_pred hhcCCc-ccccCchHHHHHHHHhcccchhccCCChhhHHHHHH
Q 027726 169 TFGNLS-VEAECPKLIAWAKRCSQKESVSASLADPHDIYDFAL 210 (219)
Q Consensus 169 ~~~~~~-~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (219)
...+.. ....+|+|++|++++.++|++++++.+.+.+.+++.
T Consensus 80 ~~~~~~~~~~~~p~l~~w~~r~~~~p~v~~~~~~~~~~~~~~~ 122 (124)
T cd03184 80 LLLGYEFPLDRFPKLKKWMDAMKEDPAVQAFYTDTEIHAEFLK 122 (124)
T ss_pred hhccccCCcccChHHHHHHHHhccChHHHHHhCCHHHHHHHHh
Confidence 221111 237899999999999999999999999887777664
No 61
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.2e-15 Score=113.20 Aligned_cols=198 Identities=23% Similarity=0.199 Sum_probs=144.8
Q ss_pred cceEEecccCChhhHHHHHHHHhcCCC----cceeecCCCCCchhh------------------------------hhhC
Q 027726 3 ENVVLLGFWPSSFAMRVKIALAEKGIK----YESKEENLFDKSPLL------------------------------LEMN 48 (219)
Q Consensus 3 ~~~~L~~~~~s~~~~~v~~~l~~~gi~----~~~~~v~~~~~~~~~------------------------------~~~~ 48 (219)
+++.||..-.|||++|..++++.||+. +..+.--..++...| ...+
T Consensus 36 gryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~ 115 (319)
T KOG2903|consen 36 GRYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIAS 115 (319)
T ss_pred ceEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcC
Confidence 578999999999999999999999994 222211001111111 1112
Q ss_pred C----CCCccceEeeC---CeeeehhHHHHHHHHhhcCC--------CCCCCCCCHHHHHHHHHHHHHHhcccccchhhh
Q 027726 49 P----VDKKIPVLIHD---GKPICESLIIIQYIDEVWHH--------KSPLMPSDSYLRSQARFWADYVDKNIYGIGKRI 113 (219)
Q Consensus 49 p----~~~~vP~L~~~---g~~i~es~~I~~yL~~~~~~--------~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~ 113 (219)
| . -+||||.|- ..+-.||..|++.+.+.+.. .-.|+| +..+++++.+..|+.+.+...+...
T Consensus 116 p~Y~gr-fTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P--~~L~~~Ide~N~wvy~~INNGVYk~ 192 (319)
T KOG2903|consen 116 PNYTGR-FTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYP--SSLRAQIDETNSWVYDKINNGVYKC 192 (319)
T ss_pred CCCCce-EEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCC--HHHHHHHhhhhceecccccCceeee
Confidence 2 2 279999973 23445999999999843321 344565 5579999999999988876655543
Q ss_pred -ccCCchHHHHHHHHHHHHHHHHHHHhCCCC--cccCCCCChhHHHHHhhhhhhhhhh-hhcCCcc---cccCchHHHHH
Q 027726 114 -WSGKGEDQEAAKKEMIGFLKNMEAELGDKH--FFGGESIGFVDVALVPFTTWFYTYE-TFGNLSV---EAECPKLIAWA 186 (219)
Q Consensus 114 -~~~~~~~~~~~~~~l~~~l~~le~~L~~~~--~l~G~~~s~aD~~l~~~l~~~~~~~-~~~~~~~---~~~~p~l~~~~ 186 (219)
|..+++.-+...+++-+.|+.+|..|+++. |++|+++|.||+.+++.+.++..+- ....... ..+||+|-.|.
T Consensus 193 GFA~~~e~Ye~~V~~lfe~LDr~E~vL~~~~~~f~~G~~LTeaDirLy~TiIRFD~VY~~hFKCn~~~ir~~Yp~l~~~l 272 (319)
T KOG2903|consen 193 GFAEKQEAYEEEVNQLFEALDRCEDVLGKNRKYFLCGDTLTEADIRLYTTIIRFDEVYVQHFKCNKKTIRDEYPNLHNWL 272 (319)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHhcccceEeeccccchhheeeeeeEEeehhhhheeeecchhhhhccCcHHHHHH
Confidence 455678888889999999999999999876 9999999999999999998776543 2222322 36999999999
Q ss_pred HHHhc-ccchhccCCChh
Q 027726 187 KRCSQ-KESVSASLADPH 203 (219)
Q Consensus 187 ~~~~~-~~~~~~~~~~~~ 203 (219)
+.+.+ .|.|+.|..-..
T Consensus 273 k~iY~~~~~~~~Ttd~~h 290 (319)
T KOG2903|consen 273 KNIYWNIPGFSSTTDFNH 290 (319)
T ss_pred HHHHhhccchhhccchhH
Confidence 99999 999999884433
No 62
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=99.63 E-value=2e-15 Score=105.66 Aligned_cols=106 Identities=17% Similarity=0.265 Sum_probs=84.7
Q ss_pred cccccchhhhccCC-chHHHHHHHHHHHHHHHHHHHhCC----------------CCcccCCCCChhHHHHHhhhhhhhh
Q 027726 104 KNIYGIGKRIWSGK-GEDQEAAKKEMIGFLKNMEAELGD----------------KHFFGGESIGFVDVALVPFTTWFYT 166 (219)
Q Consensus 104 ~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~le~~L~~----------------~~~l~G~~~s~aD~~l~~~l~~~~~ 166 (219)
..+++.+..++.++ ++..+...+++...|..||.+|++ ++|++|+++|+|||++++.+.++..
T Consensus 9 ~~~f~~~~~~~~~~~~~~~e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~~~ 88 (134)
T cd03198 9 EDIFAKFSAYIKNSNPALNENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIVKV 88 (134)
T ss_pred HHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 34555555555543 455678888999999999999976 7899999999999999999987754
Q ss_pred hh-hhcCCcccccCchHHHHHHHHhcccchhccCCChhhHHHHH
Q 027726 167 YE-TFGNLSVEAECPKLIAWAKRCSQKESVSASLADPHDIYDFA 209 (219)
Q Consensus 167 ~~-~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (219)
.. ...++.+...+|+|.+|++++.+||+|+++++..+.+..++
T Consensus 89 ~~~~~~g~~i~~~~P~L~aw~~ri~aRPsfk~t~~~~~~i~~~~ 132 (134)
T cd03198 89 VAKKYRNFEIPADLTGLWRYLKNAYQREEFTNTCPADQEIELAY 132 (134)
T ss_pred HHHhhcCCCccccCHHHHHHHHHHHCCHHHHHHcCCHHHHHHHh
Confidence 32 12345545789999999999999999999999998887665
No 63
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.63 E-value=1e-15 Score=99.60 Aligned_cols=67 Identities=24% Similarity=0.413 Sum_probs=58.4
Q ss_pred cCChhhHHHHHHHHhcCCCcceeecCCCCCc---hhhhhhCCCCCccceEeeC-CeeeehhHHHHHHHHhhcC
Q 027726 11 WPSSFAMRVKIALAEKGIKYESKEENLFDKS---PLLLEMNPVDKKIPVLIHD-GKPICESLIIIQYIDEVWH 79 (219)
Q Consensus 11 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~---~~~~~~~p~~~~vP~L~~~-g~~i~es~~I~~yL~~~~~ 79 (219)
+.||+|++++++|.++|++|+.+.++..... .++ ++||. +++|+|+++ |.+++||.+|++||+++++
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~-~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGF-YTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCC-ceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 5599999999999999999999998866432 334 78998 999999988 8999999999999999875
No 64
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=99.61 E-value=5.4e-15 Score=101.64 Aligned_cols=104 Identities=19% Similarity=0.348 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHhcccccchhhhccCC---------chHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCChhHHHHHhhh
Q 027726 91 LRSQARFWADYVDKNIYGIGKRIWSGK---------GEDQEAAKKEMIGFLKNMEAELGDKHFFGGESIGFVDVALVPFT 161 (219)
Q Consensus 91 ~~a~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~s~aD~~l~~~l 161 (219)
+++++++|+.+..+.+.+.+...+... +...+.....+.+.+..+|+.|++++|++|+++|+||+++++.+
T Consensus 2 ~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aDi~~~~~~ 81 (114)
T cd03188 2 ERARLLEWLNFLSSELHKAFGPLFYPARWATDEAAQEEVKAAARERLAARLAYLDAQLAGGPYLLGDRFSVADAYLFVVL 81 (114)
T ss_pred cHHHHHHHHHHHhhhhchhhhhcccccccccChhhHHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCcchHHHHHHHHH
Confidence 478999999999988887765443221 23356778889999999999999889999999999999999998
Q ss_pred hhhhhhhhhcCCcccccCchHHHHHHHHhcccchhccC
Q 027726 162 TWFYTYETFGNLSVEAECPKLIAWAKRCSQKESVSASL 199 (219)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~ 199 (219)
.++... +... .++|++.+|++++.++|+|++++
T Consensus 82 ~~~~~~----~~~~-~~~p~l~~w~~~~~~~p~~k~~~ 114 (114)
T cd03188 82 RWAPGV----GLDL-SDWPNLAAYLARVAARPAVQAAL 114 (114)
T ss_pred HHHhhc----CCCh-hhChHHHHHHHHHHhCHHhHhhC
Confidence 876542 2222 57999999999999999999864
No 65
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.61 E-value=4.2e-15 Score=93.98 Aligned_cols=66 Identities=30% Similarity=0.490 Sum_probs=59.6
Q ss_pred cccCChhhHHHHHHHHhcCCCcceeecCCCC--CchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHH
Q 027726 9 GFWPSSFAMRVKIALAEKGIKYESKEENLFD--KSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYID 75 (219)
Q Consensus 9 ~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~--~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~ 75 (219)
....|++|++++++|+++|++|+.+.++... ..+++.++||. +++|+|+++|.+++||.+|++||.
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPT-GKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCC-CcCCEEEECCEEEEcHHHHHHHhC
Confidence 4567999999999999999999999988753 45889999999 999999999999999999999984
No 66
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.61 E-value=4.6e-15 Score=94.55 Aligned_cols=71 Identities=32% Similarity=0.502 Sum_probs=58.0
Q ss_pred EEecccCChhhHHHHHHHHhcCCCcceeecCCCC---CchhhhhhCCCCCccceEeeC-CeeeehhHHHHHHHHh
Q 027726 6 VLLGFWPSSFAMRVKIALAEKGIKYESKEENLFD---KSPLLLEMNPVDKKIPVLIHD-GKPICESLIIIQYIDE 76 (219)
Q Consensus 6 ~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~vP~L~~~-g~~i~es~~I~~yL~~ 76 (219)
+|++++..+++.++|++|+++|++|+.+.++... +.+++.+.||..|++|+|+++ |.+++||.+|++||++
T Consensus 2 ~l~l~~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 2 TLTLYNGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEESSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 3444444559999999999999999999999753 348999999942799999998 9999999999999975
No 67
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.60 E-value=4.3e-15 Score=92.82 Aligned_cols=70 Identities=37% Similarity=0.559 Sum_probs=63.1
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecCCCCCch-hhhhhCCCCCccceEeeCCeeeehhHHHHHHHH
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFDKSP-LLLEMNPVDKKIPVLIHDGKPICESLIIIQYID 75 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~-~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~ 75 (219)
++||+++.||+|++++++|+++|++|+.+.++..+... ++.+.+|. +++|+|+++|.+++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPL-GKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 58999999999999999999999999999998765333 47889998 999999999999999999999984
No 68
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=99.59 E-value=1e-14 Score=101.33 Aligned_cols=114 Identities=27% Similarity=0.437 Sum_probs=82.5
Q ss_pred CHHHHHHHHHHHHHHhcccccch-hhhccCCchHHHHHHHHHHHHHHHHHHHhC---CCCcccCCCCChhHHHHHhhhhh
Q 027726 88 DSYLRSQARFWADYVDKNIYGIG-KRIWSGKGEDQEAAKKEMIGFLKNMEAELG---DKHFFGGESIGFVDVALVPFTTW 163 (219)
Q Consensus 88 ~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~le~~L~---~~~~l~G~~~s~aD~~l~~~l~~ 163 (219)
|+.+++.+++|+.+.. .+...+ ...+.+. ....+.+.++.||+.|+ +++|++| ++|+||+++++.+.+
T Consensus 1 d~~~ra~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~l~~Le~~L~~~~~~~fl~G-~~tlADi~l~~~~~~ 72 (120)
T cd03203 1 DPAKREFADELLAYTD-AFTKALYSSLIKGD------PSAEAAAALDYIENALSKFDDGPFFLG-QFSLVDIAYVPFIER 72 (120)
T ss_pred CHHHHHHHHHHHHHHH-HHHHHHHHHHhcCC------chHHHHHHHHHHHHHHHhcCCCCCcCC-CccHHHHHHHHHHHH
Confidence 4678999999998832 233222 2223221 12234667788888886 5899999 999999999999987
Q ss_pred hhhh-hhhcCCcccccCchHHHHHHHHhcccchhccCCChhhHHHHH
Q 027726 164 FYTY-ETFGNLSVEAECPKLIAWAKRCSQKESVSASLADPHDIYDFA 209 (219)
Q Consensus 164 ~~~~-~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (219)
+... ....++.+..++|+|.+|++++.++|+|+++.++.+.+.+++
T Consensus 73 ~~~~~~~~~~~~~~~~~P~l~~W~~~~~~rp~~~~~~~~~~~~~~~~ 119 (120)
T cd03203 73 FQIFLSELFNYDITEGRPNLAAWIEEMNKIEAYTQTKQDPQELLDLA 119 (120)
T ss_pred HHHHHHHhcCccccccCcHHHHHHHHHhcchHHHhHcCCHHHHHhhh
Confidence 6531 123445554689999999999999999999999888776643
No 69
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=99.58 E-value=1.9e-14 Score=99.96 Aligned_cols=103 Identities=20% Similarity=0.278 Sum_probs=78.0
Q ss_pred cccchhhhccCCchHHHHHHHHHHHHHHHHHHHhCC-CCcccCCCCChhHHHHHhhhhhhhhh-hhhcCCcccccCchHH
Q 027726 106 IYGIGKRIWSGKGEDQEAAKKEMIGFLKNMEAELGD-KHFFGGESIGFVDVALVPFTTWFYTY-ETFGNLSVEAECPKLI 183 (219)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~-~~~l~G~~~s~aD~~l~~~l~~~~~~-~~~~~~~~~~~~p~l~ 183 (219)
+.+.+...+.+++.. +...+.+.+.+..||.+|++ ++|++|+++|+||+++++.+.++... +.+.++.+...+|+|.
T Consensus 14 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~Le~~L~~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~P~l~ 92 (121)
T cd03201 14 IFSTFVGFLKSKDSN-DGTEQALLDELEALEDHLKENGPFINGEKISAVDLSLAPKLYHLEIALGHYKNWSVPESLTSVK 92 (121)
T ss_pred HHHHHHHHHHCCcHH-HHHHHHHHHHHHHHHHHHhcCCCccCCCCCCHHhHHHHHHHHHHHHHHHHhcCCCCcccchHHH
Confidence 333334444433333 55667899999999999984 79999999999999999988776642 2223443447899999
Q ss_pred HHHHHHhcccchhccCCChhhHHHHH
Q 027726 184 AWAKRCSQKESVSASLADPHDIYDFA 209 (219)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (219)
+|++++.+||+|+++++..+.+.+.+
T Consensus 93 ~w~~rl~~rps~~~t~~~~~~~~~~~ 118 (121)
T cd03201 93 SYMKALFSRESFVKTKAEKEDVIAGW 118 (121)
T ss_pred HHHHHHHCCchhhhcCCCHHHHHHHh
Confidence 99999999999999999888776554
No 70
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.57 E-value=1.1e-14 Score=91.91 Aligned_cols=65 Identities=28% Similarity=0.333 Sum_probs=57.6
Q ss_pred eEEeccc-------CChhhHHHHHHHHhcCCCcceeecCCCCCchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHHhh
Q 027726 5 VVLLGFW-------PSSFAMRVKIALAEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYIDEV 77 (219)
Q Consensus 5 ~~L~~~~-------~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~~~ 77 (219)
++||.++ .||+|++++++|+++|++|+.+.++... .||. +++|+|+++|..++||.+|++||+++
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~-------~~p~-g~vP~l~~~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNPW-------RSPT-GKLPFLELNGEKIADSEKIIEYLKKK 72 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCcc-------cCCC-cccCEEEECCEEEcCHHHHHHHHhhC
Confidence 3577776 6999999999999999999999887532 7898 99999999999999999999999874
No 71
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=99.57 E-value=2.1e-14 Score=99.88 Aligned_cols=108 Identities=16% Similarity=0.169 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHhcccccchhhhcc-------CC--chHHHHHHHHHHHHHHHHHHHhC--CCCcccCCCCChhHHHHH
Q 027726 90 YLRSQARFWADYVDKNIYGIGKRIWS-------GK--GEDQEAAKKEMIGFLKNMEAELG--DKHFFGGESIGFVDVALV 158 (219)
Q Consensus 90 ~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~~~~l~~~l~~le~~L~--~~~~l~G~~~s~aD~~l~ 158 (219)
.+++++++|+.+++..+.+.+...+. .. ....+.....+.+.|..+|++|+ +++|++|+++|+||++++
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~~~ 81 (121)
T cd03191 2 KKRARVRALALIIACDIHPLNNLRVLKYLTEELGLDEEAKNAWYRHWIARGFAALEKLLAQTAGKFCFGDEPTLADICLV 81 (121)
T ss_pred hhHHHHHHHHHHHHccCCccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecCCcCCHHHHHHH
Confidence 46899999999999888765322111 11 12234455678999999999997 458999999999999999
Q ss_pred hhhhhhhhhhhhcCCcccccCchHHHHHHHHhcccchhccCCCh
Q 027726 159 PFTTWFYTYETFGNLSVEAECPKLIAWAKRCSQKESVSASLADP 202 (219)
Q Consensus 159 ~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~ 202 (219)
+.+.++... +..+ ..+|+|++|++++.++|+|+++++.+
T Consensus 82 ~~~~~~~~~----~~~~-~~~p~l~~w~~~~~~~p~~~~~~~~~ 120 (121)
T cd03191 82 PQVYNARRF----GVDL-SPYPTIARINEACLELPAFQAAHPDN 120 (121)
T ss_pred HHHHHHHHh----CCCc-ccCcHHHHHHHHHHhChhHHHhCcCc
Confidence 998776542 2333 78999999999999999999988654
No 72
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=99.56 E-value=2.5e-14 Score=98.95 Aligned_cols=106 Identities=15% Similarity=0.280 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhcccccchhhh-----cc------CCchHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCChhHHHHHh
Q 027726 91 LRSQARFWADYVDKNIYGIGKRI-----WS------GKGEDQEAAKKEMIGFLKNMEAELGDKHFFGGESIGFVDVALVP 159 (219)
Q Consensus 91 ~~a~~~~~~~~~~~~~~~~~~~~-----~~------~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~s~aD~~l~~ 159 (219)
+++++.+|+.+....+.+.+... +. .+....+.....+.+.++.||.+|++++|++|+++|+||+++++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~ 81 (118)
T cd03187 2 ERAIVEQWLEVESHQFDPPASALAFELVFKPMLGLPTDEAVVEENEEKLKKVLDVYEARLSKSKYLAGDSFTLADLSHLP 81 (118)
T ss_pred chHHHHHHHHHHHhhcchhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHcccCcccCCCCccHHHHHHHH
Confidence 46778888888777776554321 11 12344566788999999999999998999999999999999999
Q ss_pred hhhhhhhhhhhcCCcccccCchHHHHHHHHhcccchhccC
Q 027726 160 FTTWFYTYETFGNLSVEAECPKLIAWAKRCSQKESVSASL 199 (219)
Q Consensus 160 ~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~ 199 (219)
.+.++...+ . ......+|++++|++++.++|++++++
T Consensus 82 ~~~~~~~~~--~-~~~~~~~p~l~~~~~~~~~~p~~~~~~ 118 (118)
T cd03187 82 YLQYLMATP--F-AKLFDSRPHVKAWWEDISARPAWKKVL 118 (118)
T ss_pred HHHHHHHcc--c-hhhhhcCchHHHHHHHHHhCHHHHhhC
Confidence 987765321 1 112367999999999999999998864
No 73
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=99.55 E-value=2e-14 Score=98.78 Aligned_cols=104 Identities=13% Similarity=0.236 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhcccccchhhhc-----c--CCchHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCChhHHHHHhhhhhh
Q 027726 92 RSQARFWADYVDKNIYGIGKRIW-----S--GKGEDQEAAKKEMIGFLKNMEAELGDKHFFGGESIGFVDVALVPFTTWF 164 (219)
Q Consensus 92 ~a~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~s~aD~~l~~~l~~~ 164 (219)
++++.+|+.+.+..+.+.+...+ . .++........++.+.++.+|..|++++|++|+++|+||+++++.+.+.
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~~~~~ 81 (113)
T cd03178 2 RYEVLQWLFFQMGGLGPMFGQAGHFSRYAPEKIPYAIERYTNEAKRLYGVLDKRLAGRDYLAGDEYSIADIAIFPWVRRL 81 (113)
T ss_pred hHHHHHHHHHHHccCCCcchHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHccCCcccCCCCCeeeeeHHHHHHHH
Confidence 67889999999888877644321 1 1244566788899999999999999899999999999999999999887
Q ss_pred hhhhhhcCCcccccCchHHHHHHHHhcccchhccC
Q 027726 165 YTYETFGNLSVEAECPKLIAWAKRCSQKESVSASL 199 (219)
Q Consensus 165 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~ 199 (219)
...+ ......+|++.+|++++.++|+|++++
T Consensus 82 ~~~~----~~~~~~~p~l~~w~~~~~~~p~~~~~~ 112 (113)
T cd03178 82 EWIG----IDDLDDFPNVKRWLDRIAARPAVQRGL 112 (113)
T ss_pred Hhcc----ccchhhchHHHHHHHHHhhCHHHHHhc
Confidence 6432 222467999999999999999999875
No 74
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=99.55 E-value=5.3e-14 Score=97.22 Aligned_cols=104 Identities=18% Similarity=0.241 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHHHHhcccccchhhhccC-------------CchHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCChhH
Q 027726 88 DSYLRSQARFWADYVDKNIYGIGKRIWSG-------------KGEDQEAAKKEMIGFLKNMEAELGDKHFFGGESIGFVD 154 (219)
Q Consensus 88 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~s~aD 154 (219)
|+.+++.+++|+.+++..+.+.+...+.. +....+....++.+.+..||.+|++++|++|+++|+||
T Consensus 1 d~~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~gd~~t~aD 80 (117)
T cd03182 1 TPLERAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYLDTRLAGSPYVAGDRFTIAD 80 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHH
Confidence 46789999999999888876554433211 13446778889999999999999988999999999999
Q ss_pred HHHHhhhhhhhhhhhhcCCcccccCchHHHHHHHHhcccch
Q 027726 155 VALVPFTTWFYTYETFGNLSVEAECPKLIAWAKRCSQKESV 195 (219)
Q Consensus 155 ~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~ 195 (219)
+++++.+.++... +..+...+|+|.+|++++.++|++
T Consensus 81 i~l~~~~~~~~~~----~~~~~~~~p~l~~w~~~~~~~p~~ 117 (117)
T cd03182 81 ITAFVGLDFAKVV----KLRVPEELTHLRAWYDRMAARPSA 117 (117)
T ss_pred HHHHHHhHHHHhc----CCCCccccHHHHHHHHHHHhccCC
Confidence 9999999887642 334446899999999999999974
No 75
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=99.53 E-value=8e-14 Score=96.64 Aligned_cols=103 Identities=15% Similarity=0.188 Sum_probs=81.3
Q ss_pred CCCHHHHHHHHHHHHHHhcccccchhhh-cc---CC-----------chHHHHHHHHHHHHHHHHHHHhCCCCcccCCCC
Q 027726 86 PSDSYLRSQARFWADYVDKNIYGIGKRI-WS---GK-----------GEDQEAAKKEMIGFLKNMEAELGDKHFFGGESI 150 (219)
Q Consensus 86 p~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~---~~-----------~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~ 150 (219)
|.++.+++++++|+.+....+.+.+... +. .. ....+....++.+.++.+|++|++++|++|+++
T Consensus 2 ~~~~~~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~ 81 (119)
T cd03189 2 PPDTAEYADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDRLAKKGYFVGDKL 81 (119)
T ss_pred CCCHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHccCCCCCCCCC
Confidence 4678899999999999988887664321 11 11 223445667899999999999999999999999
Q ss_pred ChhHHHHHhhhhhhhhhhhhcCCcccccCchHHHHHHHHhccc
Q 027726 151 GFVDVALVPFTTWFYTYETFGNLSVEAECPKLIAWAKRCSQKE 193 (219)
Q Consensus 151 s~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~ 193 (219)
|+||+++++.+.++...+ . ....+|+|.+|++++.++|
T Consensus 82 t~ADi~l~~~~~~~~~~~----~-~~~~~p~l~~w~~~~~~~p 119 (119)
T cd03189 82 TAADIMMSFPLEAALARG----P-LLEKYPNIAAYLERIEARP 119 (119)
T ss_pred CHHHHHHHHHHHHHHHcC----c-ccccCchHHHHHHHHhcCC
Confidence 999999999988876422 2 2378999999999999986
No 76
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=99.52 E-value=9.3e-14 Score=96.68 Aligned_cols=110 Identities=18% Similarity=0.209 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHhcccccchhhhccCC-chHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCChhHHHHHhhhhhhhhhhh
Q 027726 91 LRSQARFWADYVDKNIYGIGKRIWSGK-GEDQEAAKKEMIGFLKNMEAELGDKHFFGGESIGFVDVALVPFTTWFYTYET 169 (219)
Q Consensus 91 ~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~ 169 (219)
+++++++.++.+.+.........+..+ ....+.....+.+.+..||.+|++++|++|+++|+||+++++.+.++....
T Consensus 2 e~~~id~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T~aDi~l~~~~~~~~~~~- 80 (121)
T cd03209 2 ERIRVDMLEQQAMDLRMGLARICYSPDFEKLKPDYLAKLPDKLKLFSDFLGDRPWFAGDKITYVDFLLYEALDQHRIFE- 80 (121)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHhCCCCCcCCCCccHHHHHHHHHHHHHHHhC-
Confidence 366777777766654433322222222 334556778889999999999998899999999999999999998876532
Q ss_pred hcCCcccccCchHHHHHHHHhcccchhccCCChhh
Q 027726 170 FGNLSVEAECPKLIAWAKRCSQKESVSASLADPHD 204 (219)
Q Consensus 170 ~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~ 204 (219)
......+|+|.+|++++.++|+++++++++..
T Consensus 81 ---~~~~~~~P~l~~~~~rv~~~p~vk~~~~~~~~ 112 (121)
T cd03209 81 ---PDCLDAFPNLKDFLERFEALPKISAYMKSDRF 112 (121)
T ss_pred ---ccccccChHHHHHHHHHHHCHHHHHHHhcccC
Confidence 12236899999999999999999999877643
No 77
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=99.51 E-value=6.5e-14 Score=97.63 Aligned_cols=111 Identities=16% Similarity=0.235 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhcccccchhhhcc-------CCchHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCChhHHHHHhhhhhh
Q 027726 92 RSQARFWADYVDKNIYGIGKRIWS-------GKGEDQEAAKKEMIGFLKNMEAELGDKHFFGGESIGFVDVALVPFTTWF 164 (219)
Q Consensus 92 ~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~s~aD~~l~~~l~~~ 164 (219)
++++++|+.+.+..+.+.+...+. .+....+....++.+.++.+|+.|++++|++|+++|+||+++++.+.++
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~siaDi~l~~~~~~~ 81 (123)
T cd03181 2 EAQVLQWVSFANTELLPAVAAWFLPLLGIAPYNKKSVEAALEELDRVLGVLEERLLKRTYLVGERLTLADIFVAGALLLG 81 (123)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHccCceeccCCccHHHHHHHHHHHHH
Confidence 677889999988887765543221 1234567788899999999999999899999999999999999999886
Q ss_pred hhhhhhcCCcccccCchHHHHHHHHhcccchhccCCChhh
Q 027726 165 YTYETFGNLSVEAECPKLIAWAKRCSQKESVSASLADPHD 204 (219)
Q Consensus 165 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~ 204 (219)
.... .+......+|++.+|++++.++|+|++++++.+.
T Consensus 82 ~~~~--~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~ 119 (123)
T cd03181 82 FTYV--FDKEWRAKYPNVTRWFNTVVNQPIFKAVFGEVKL 119 (123)
T ss_pred HHHH--cCHHHHHhChHHHHHHHHHHcCHHHHHHcCCCCc
Confidence 4321 1112236799999999999999999999876653
No 78
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=99.51 E-value=8.5e-14 Score=96.42 Aligned_cols=105 Identities=16% Similarity=0.247 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhcccccchhhhcc----CCchHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCChhHHHHHhhhhhhhh
Q 027726 91 LRSQARFWADYVDKNIYGIGKRIWS----GKGEDQEAAKKEMIGFLKNMEAELGDKHFFGGESIGFVDVALVPFTTWFYT 166 (219)
Q Consensus 91 ~~a~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~s~aD~~l~~~l~~~~~ 166 (219)
+++++.+|+.+....+.+.....+. .+....+....++.+.++.||.+|++++|++|+++|+||+++++.+.++..
T Consensus 2 ~~a~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~aDi~l~~~~~~~~~ 81 (118)
T cd03177 2 KRAIVNQRLHFDSGTLYQRLRDYYYPILFGGAEPPEEKLDKLEEALDFLETFLEGSDYVAGDQLTIADLSLVATVSTLEA 81 (118)
T ss_pred hHHHHHHHHHhhhchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHccCCeeCCCCcCHHHHHHHHHHHHHHH
Confidence 4678888988887777655433321 223445677889999999999999988999999999999999999988764
Q ss_pred hhhhcCCcccccCchHHHHHHHHhcccchhccC
Q 027726 167 YETFGNLSVEAECPKLIAWAKRCSQKESVSASL 199 (219)
Q Consensus 167 ~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~ 199 (219)
. .+... ..+|+|.+|++++.++|+|++..
T Consensus 82 ~---~~~~~-~~~p~l~~w~~~~~~~p~~~~~~ 110 (118)
T cd03177 82 L---LPLDL-SKYPNVRAWLERLKALPPYEEAN 110 (118)
T ss_pred h---cCCCh-hhCchHHHHHHHHHcccchHHHH
Confidence 1 22232 57999999999999999999865
No 79
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=1.6e-12 Score=94.74 Aligned_cols=169 Identities=14% Similarity=0.217 Sum_probs=129.6
Q ss_pred ChhhHHHHHHHHhcCCCcceeecCCCCCchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHHhhcCCCCCCCC-CCHHH
Q 027726 13 SSFAMRVKIALAEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYIDEVWHHKSPLMP-SDSYL 91 (219)
Q Consensus 13 s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~~~~~~~~~l~p-~~~~~ 91 (219)
...|..|..+|+..++||.++..+ ..+ -++|. |++|.|..+.++++|-..|+.+...+.- .|-. -+..+
T Consensus 34 ~ascLAVqtfLrMcnLPf~v~~~~----Nae--fmSP~-G~vPllr~g~~~~aef~pIV~fVeak~~---~l~s~lsE~q 103 (257)
T KOG3027|consen 34 NASCLAVQTFLRMCNLPFNVRQRA----NAE--FMSPG-GKVPLLRIGKTLFAEFEPIVDFVEAKGV---TLTSWLSEDQ 103 (257)
T ss_pred chhHHHHHHHHHHcCCCceeeecC----Ccc--ccCCC-CCCceeeecchhhhhhhHHHHHHHHhcc---chhhhhhhHH
Confidence 456999999999999999987554 333 36896 9999999999999999999999999854 2322 35567
Q ss_pred HHHHHHHHHHHhcccccchhhh-----------------------------cc-------------CCchHHHHHHHHHH
Q 027726 92 RSQARFWADYVDKNIYGIGKRI-----------------------------WS-------------GKGEDQEAAKKEMI 129 (219)
Q Consensus 92 ~a~~~~~~~~~~~~~~~~~~~~-----------------------------~~-------------~~~~~~~~~~~~l~ 129 (219)
++.++..+.+++..+..+-... +. =+....+.+.+++.
T Consensus 104 kadmra~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqVie~vd 183 (257)
T KOG3027|consen 104 KADMRAYVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQVIEQVD 183 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHH
Confidence 8888888887777654331110 00 01233678888999
Q ss_pred HHHHHHHHHhCCCCcccCCCCChhHHHHHhhhhhhhhhhhhcCCcc---cccCchHHHHHHHHhcc
Q 027726 130 GFLKNMEAELGDKHFFGGESIGFVDVALVPFTTWFYTYETFGNLSV---EAECPKLIAWAKRCSQK 192 (219)
Q Consensus 130 ~~l~~le~~L~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~---~~~~p~l~~~~~~~~~~ 192 (219)
..++.|+.+|+.++|+.|++|+-+|..+++.+..+.++. .+..++ .+.|++|-++.+|+.+.
T Consensus 184 kc~~aLsa~L~~q~yf~g~~P~elDAlvFGHlytilTt~-Lpn~ela~~lkkys~LlefcrrIeq~ 248 (257)
T KOG3027|consen 184 KCCRALSAQLGSQPYFTGDQPTELDALVFGHLYTILTTR-LPNMELANILKKYSNLLEFCRRIEQQ 248 (257)
T ss_pred HHHHHHHHHhcCCCccCCCCccHHHHHHHhhhHHhhhhc-CCcHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988776543 344433 37899999999999863
No 80
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=99.47 E-value=2.2e-13 Score=95.47 Aligned_cols=109 Identities=20% Similarity=0.213 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHhcccccchhhhccCCchHHHHHHHHHHHHHHHHHHHhCC---CCcccCCCCChhHHHHHhhhhhhhhh
Q 027726 91 LRSQARFWADYVDKNIYGIGKRIWSGKGEDQEAAKKEMIGFLKNMEAELGD---KHFFGGESIGFVDVALVPFTTWFYTY 167 (219)
Q Consensus 91 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~---~~~l~G~~~s~aD~~l~~~l~~~~~~ 167 (219)
+++.+++..+.+.+.........+.......+.....+.+.+..||.+|++ ++|++|+++|+||+++++.+.++...
T Consensus 3 e~~~vd~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~l~~~~~~~~~~ 82 (126)
T cd03210 3 EAALIDMVNDGVEDLRLKYVRMIYQNYEAGKDDYIKDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYNLFDLLDIHLVL 82 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHHHHHHHHHHHHh
Confidence 466677766665544333222222222334456677789999999999974 58999999999999999999887642
Q ss_pred hhhcCCcccccCchHHHHHHHHhcccchhccCCChh
Q 027726 168 ETFGNLSVEAECPKLIAWAKRCSQKESVSASLADPH 203 (219)
Q Consensus 168 ~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~ 203 (219)
. . .....+|+|.+|++++.++|+|+++++...
T Consensus 83 ~---~-~~~~~~P~l~~~~~rv~~~p~v~~~~~~~~ 114 (126)
T cd03210 83 A---P-GCLDAFPLLKAFVERLSARPKLKAYLESDA 114 (126)
T ss_pred C---h-HhhhcChHHHHHHHHHHhCcHHHHHHhCcC
Confidence 1 1 123789999999999999999999886654
No 81
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.47 E-value=4.6e-13 Score=91.35 Aligned_cols=100 Identities=14% Similarity=0.305 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHhcccccchhhhc----c-C----CchHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCChhHHHHHhhh
Q 027726 91 LRSQARFWADYVDKNIYGIGKRIW----S-G----KGEDQEAAKKEMIGFLKNMEAELGDKHFFGGESIGFVDVALVPFT 161 (219)
Q Consensus 91 ~~a~~~~~~~~~~~~~~~~~~~~~----~-~----~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~s~aD~~l~~~l 161 (219)
+++++.+|+.+..+.+.+.+...+ . . +....+....++.+.++.+|++|++++|++|+++|+||+++++++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~l~g~~~t~aDi~~~~~~ 81 (110)
T cd03180 2 ARARADRWMDWQTSTLNPAFRYAFWGLVRTPPEQRDPAAIAASLAAWAKLMAILDAQLAGRPYLAGDRFTLADIPLGCSA 81 (110)
T ss_pred chhHHHHHHHHHHhhcChHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHHH
Confidence 477889999998888877654332 1 1 123355678899999999999999899999999999999999887
Q ss_pred hhhhhhhhhcCCcccccCchHHHHHHHHhcccch
Q 027726 162 TWFYTYETFGNLSVEAECPKLIAWAKRCSQKESV 195 (219)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~ 195 (219)
..... . +.. ...+|+|++|++++.++|+|
T Consensus 82 ~~~~~---~-~~~-~~~~p~l~~~~~~~~~~p~~ 110 (110)
T cd03180 82 YRWFE---L-PIE-RPPLPHLERWYARLRARPAF 110 (110)
T ss_pred HHHHH---c-ccc-cccCchHHHHHHHHHhCCCC
Confidence 53322 1 122 37899999999999999986
No 82
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.46 E-value=1.1e-13 Score=93.45 Aligned_cols=77 Identities=18% Similarity=0.215 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCChhHHHHHhhhhhhhhhhhhcCCcccccCchHHHHHHHHhcccchhcc
Q 027726 119 EDQEAAKKEMIGFLKNMEAELGDKHFFGGESIGFVDVALVPFTTWFYTYETFGNLSVEAECPKLIAWAKRCSQKESVSAS 198 (219)
Q Consensus 119 ~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~ 198 (219)
...+....++.+.++.+|.+|++++|++|+++|+||+++++.+.++... + ....+|+|++|++++.++|+++++
T Consensus 26 ~~~~~~~~~~~~~l~~le~~l~~~~~l~g~~~t~aDi~~~~~~~~~~~~----~--~~~~~p~l~~w~~~~~~~p~~~~~ 99 (103)
T cd03207 26 PARMAGFGSYDDVLAALEQALAKGPYLLGERFTAADVLVGSPLGWGLQF----G--LLPERPAFDAYIARITDRPAFQRA 99 (103)
T ss_pred chhhhhhhhHHHHHHHHHHHHccCCcccCCccCHHHHHHHHHHHHHHHc----C--CCCCChHHHHHHHHHHcCHHHHHH
Confidence 3456677889999999999999899999999999999999999887642 2 236799999999999999999998
Q ss_pred CCC
Q 027726 199 LAD 201 (219)
Q Consensus 199 ~~~ 201 (219)
.+.
T Consensus 100 ~~~ 102 (103)
T cd03207 100 AAI 102 (103)
T ss_pred hcc
Confidence 753
No 83
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=99.46 E-value=2e-13 Score=95.68 Aligned_cols=104 Identities=21% Similarity=0.262 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhcccccchhh---------hccC---CchHHHHHHHHHHHHHHHHHHHh-CCCCcccCCCCChhHHHHH
Q 027726 92 RSQARFWADYVDKNIYGIGKR---------IWSG---KGEDQEAAKKEMIGFLKNMEAEL-GDKHFFGGESIGFVDVALV 158 (219)
Q Consensus 92 ~a~~~~~~~~~~~~~~~~~~~---------~~~~---~~~~~~~~~~~l~~~l~~le~~L-~~~~~l~G~~~s~aD~~l~ 158 (219)
++++++|+.+....+.+.+.. .+.+ .+...+....++.+.++.+|++| ++++|++|+++|+||++++
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~l~Gd~~t~ADi~l~ 81 (126)
T cd03183 2 RARVDEYLAWQHTNLRLGCAKYFWQKVLLPLLGGKPVSPEKVKKAEENLEESLDLLENYFLKDKPFLAGDEISIADLSAV 81 (126)
T ss_pred cccHHHHHHHHHhhhHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHH
Confidence 456777877777666543221 1111 24456677888999999999985 5579999999999999999
Q ss_pred hhhhhhhhhhhhcCCcccccCchHHHHHHHHhc--ccchhccC
Q 027726 159 PFTTWFYTYETFGNLSVEAECPKLIAWAKRCSQ--KESVSASL 199 (219)
Q Consensus 159 ~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~--~~~~~~~~ 199 (219)
+.+.+.... +.+....+|+|.+|++++.+ +|+|+++.
T Consensus 82 ~~~~~~~~~----~~~~~~~~p~l~~w~~~~~~~~~p~~~~~~ 120 (126)
T cd03183 82 CEIMQPEAA----GYDVFEGRPKLAAWRKRVKEAGNPLFDEAH 120 (126)
T ss_pred HHHHHHHhc----CCcccccCchHHHHHHHHHHhcchhHHHHH
Confidence 988766532 33334789999999999999 99999864
No 84
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=99.45 E-value=5.5e-13 Score=94.71 Aligned_cols=109 Identities=16% Similarity=0.136 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhcccccchhhhccCCchH----HHHHHHHHHHHHHHHHHHhC--CCCcccCCCCChhHHHHHhhhhhh
Q 027726 91 LRSQARFWADYVDKNIYGIGKRIWSGKGED----QEAAKKEMIGFLKNMEAELG--DKHFFGGESIGFVDVALVPFTTWF 164 (219)
Q Consensus 91 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~l~~le~~L~--~~~~l~G~~~s~aD~~l~~~l~~~ 164 (219)
+++.+++.++.+.+.+...+...+..+.+. .......+.+.+..||.+|+ +++|++|+++|+||+++++.+.++
T Consensus 3 e~a~iD~i~~~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~~~l~G~~~T~ADi~l~~~l~~~ 82 (137)
T cd03208 3 ERALIDMYVEGTADLMEMILMLPFLPPEEKEAKLALIKEKAKNRYFPVFEKVLKSHGQDFLVGNKLSRADIHLLEAILMV 82 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCCCCHHHHHHHHHHHHH
Confidence 567778887777666554443333322111 12333456789999999997 678999999999999999999887
Q ss_pred hhhhhhcCCcccccCchHHHHHHHHhcccchhccCCChh
Q 027726 165 YTYETFGNLSVEAECPKLIAWAKRCSQKESVSASLADPH 203 (219)
Q Consensus 165 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~ 203 (219)
.... ......+|+|.+|++++.++|++++++....
T Consensus 83 ~~~~----~~~l~~~P~l~~~~~rv~~~P~vk~~~~~~~ 117 (137)
T cd03208 83 EELD----PSLLSDFPLLQAFKTRISNLPTIKKFLQPGS 117 (137)
T ss_pred HHhc----hhhhccChHHHHHHHHHHcCHHHHHHHhcCC
Confidence 6421 1223689999999999999999999986544
No 85
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.45 E-value=4.7e-13 Score=92.12 Aligned_cols=103 Identities=23% Similarity=0.197 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHhcccccchhhh-----ccCC--chHHHHHHHHHHHHHHHHHHHhC-CCCcccCCCCChhHHHHHhhh
Q 027726 90 YLRSQARFWADYVDKNIYGIGKRI-----WSGK--GEDQEAAKKEMIGFLKNMEAELG-DKHFFGGESIGFVDVALVPFT 161 (219)
Q Consensus 90 ~~~a~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~l~~~l~~le~~L~-~~~~l~G~~~s~aD~~l~~~l 161 (219)
.+++++++|+.++++.+.+..... +... ....+...+.+.+.+..+|..|+ +++||+| ++|+||+++++++
T Consensus 2 ~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~l~G-~fSiAD~~l~~~~ 80 (114)
T cd03195 2 RQRARARQVQAWLRSDLLPIRVERSTEVVFAGAKAEPLSEAAQAAAEKLIAVAEALLPPGAANLFG-EWCIADTDLALML 80 (114)
T ss_pred HhhHHHHHHHHHHHhhHHHHHHhCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcccC-CccHHHHHHHHHH
Confidence 468999999999999988652211 1111 22456788888999999999995 5589999 5999999999999
Q ss_pred hhhhhhhhhcCCcccccCchHHHHHHHHhcccchhccCC
Q 027726 162 TWFYTYETFGNLSVEAECPKLIAWAKRCSQKESVSASLA 200 (219)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~ 200 (219)
.|+... +..+ . |++.+|++++.+||+|+++++
T Consensus 81 ~~~~~~----g~~l-~--p~l~ay~~r~~~rPa~~~~~~ 112 (114)
T cd03195 81 NRLVLN----GDPV-P--ERLRDYARRQWQRPSVQAWLA 112 (114)
T ss_pred HHHHHc----CCCC-C--HHHHHHHHHHHCCHHHHHHHh
Confidence 998763 3444 2 999999999999999999764
No 86
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=99.44 E-value=6.4e-13 Score=88.45 Aligned_cols=95 Identities=16% Similarity=0.260 Sum_probs=74.8
Q ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHhcccccchhhhccCCchHHHHHHHHHHHHHHHHHHHhCCCCcccCCCC
Q 027726 71 IQYIDEVWHHKSPLMPSDSYLRSQARFWADYVDKNIYGIGKRIWSGKGEDQEAAKKEMIGFLKNMEAELGDKHFFGGESI 150 (219)
Q Consensus 71 ~~yL~~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~ 150 (219)
++||.+..+ ++|.++.+.+.+++|++.....+.. ....++.+.++.+|++|++++|++|+++
T Consensus 1 ~r~~~~~~~----~~~~~~~~~~~vd~~~d~~~~~l~~--------------~~~~~~~~~l~~le~~L~~~~fl~Gd~~ 62 (96)
T cd03200 1 ARFLYRLLG----PAPNAPNAATNIDSWVDTAIFQLAE--------------GSSKEKAAVLRALNSALGRSPWLVGSEF 62 (96)
T ss_pred CchHHHHhc----ccCCCchHHHHHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHHHcCCCccCCCCC
Confidence 368888744 9999999999999999976533320 1444566788899999999999999999
Q ss_pred ChhHHHHHhhhhhhhhhhhhcCCcccccCchHHHHHHHHhc
Q 027726 151 GFVDVALVPFTTWFYTYETFGNLSVEAECPKLIAWAKRCSQ 191 (219)
Q Consensus 151 s~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 191 (219)
|+||+++++.+.+.. .. ...+|+|.+|++++..
T Consensus 63 tiADi~l~~~l~~~~-------~~-~~~~p~l~~w~~r~~~ 95 (96)
T cd03200 63 TVADIVSWCALLQTG-------LA-SAAPANVQRWLKSCEN 95 (96)
T ss_pred CHHHHHHHHHHHHcc-------cc-cccChHHHHHHHHHHh
Confidence 999999998876431 12 2679999999999975
No 87
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.39 E-value=1.5e-12 Score=87.52 Aligned_cols=94 Identities=19% Similarity=0.317 Sum_probs=68.9
Q ss_pred HHHHHHhcccccchhhh----ccCCchHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCChhHHHHHhhhhhhhhhhhhcC
Q 027726 97 FWADYVDKNIYGIGKRI----WSGKGEDQEAAKKEMIGFLKNMEAELGDKHFFGGESIGFVDVALVPFTTWFYTYETFGN 172 (219)
Q Consensus 97 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~ 172 (219)
+|+.+..+.+.+..... ........+....++.+.++.+|++|++++|++|+++|+||+++++.+.+... .+
T Consensus 3 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~~~----~~ 78 (100)
T cd03206 3 RWLSVAAGEIANGPAAARLITLFGAPLDKETAIARAHRLLRLLEEHLAGRDWLAGDRPTIADVAVYPYVALAPE----GG 78 (100)
T ss_pred eehhhhhhhcccchhHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHccCCccCCCCCCHHHHHHHHHHHHHhc----cC
Confidence 45666666554332211 11122345677889999999999999999999999999999999988865432 22
Q ss_pred CcccccCchHHHHHHHHhcccch
Q 027726 173 LSVEAECPKLIAWAKRCSQKESV 195 (219)
Q Consensus 173 ~~~~~~~p~l~~~~~~~~~~~~~ 195 (219)
.. ..++|+|++|++++.++|+|
T Consensus 79 ~~-~~~~p~l~~~~~~~~~~p~~ 100 (100)
T cd03206 79 VD-LEDYPAIRRWLARIEALPGF 100 (100)
T ss_pred CC-hhhCcHHHHHHHHHHhCcCC
Confidence 22 26799999999999999975
No 88
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=99.38 E-value=1.8e-12 Score=80.99 Aligned_cols=68 Identities=26% Similarity=0.435 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCChhHHHHHhhhhhhhhhhhhcCCcccccCchHHHHHHH
Q 027726 119 EDQEAAKKEMIGFLKNMEAELGDKHFFGGESIGFVDVALVPFTTWFYTYETFGNLSVEAECPKLIAWAKR 188 (219)
Q Consensus 119 ~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~ 188 (219)
...+...+++.+.++.||.+|++++|++|++||+||+++++.+.++..... +..+...+|+|.+|++|
T Consensus 2 ~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~--~~~~~~~~p~l~~w~~r 69 (69)
T PF13410_consen 2 AAVERARAQLEAALDALEDHLADGPFLFGDRPSLADIALAPFLWRLRFVGP--DFDLLEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSBTTBSS--HHHHHHHHHHHHHHHCTH--TCCHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhCc--CcCccccCHHHHHHHhC
Confidence 456788999999999999999999999999999999999999999987642 22444899999999986
No 89
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=99.38 E-value=1.9e-12 Score=86.06 Aligned_cols=71 Identities=24% Similarity=0.468 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCChhHHHHHhhhhhhhhhhhhcCCccc-ccCchHHHHHHHHhccc
Q 027726 119 EDQEAAKKEMIGFLKNMEAELGDKHFFGGESIGFVDVALVPFTTWFYTYETFGNLSVE-AECPKLIAWAKRCSQKE 193 (219)
Q Consensus 119 ~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~-~~~p~l~~~~~~~~~~~ 193 (219)
...+.....+.+.|+.+|+.|++++|++|+++|+||+++++.+.++...+. ... .++|+|.+|++++.++|
T Consensus 24 ~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~~~----~~~~~~~P~l~~w~~~~~~~P 95 (95)
T PF00043_consen 24 EMVEEARAKVPRYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDWLERLGP----DFLFEKFPKLKKWYERMFARP 95 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHHTT----TTTHTTSHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHHHHHhCC----CcccccCHHHHHHHHHHHcCC
Confidence 356788899999999999999999999999999999999999999887542 333 78999999999999987
No 90
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.37 E-value=2.9e-12 Score=86.99 Aligned_cols=77 Identities=21% Similarity=0.231 Sum_probs=62.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHhCCC----------CcccCCCCChhHHHHHhhhhhhhhhhhhcCCcc-cccCchHHHHH
Q 027726 118 GEDQEAAKKEMIGFLKNMEAELGDK----------HFFGGESIGFVDVALVPFTTWFYTYETFGNLSV-EAECPKLIAWA 186 (219)
Q Consensus 118 ~~~~~~~~~~l~~~l~~le~~L~~~----------~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~-~~~~p~l~~~~ 186 (219)
....+....++.+.++.+|.+|+++ +||+|+++|+||+++++.+.++...+ .....+ ...+|+|.+|+
T Consensus 24 ~~~i~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~~~~-~~~~~~~~~~~P~l~~w~ 102 (111)
T cd03204 24 VEYLKKILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLKFLG-LSRRYWGNGKRPNLEAYF 102 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHHHcC-ccccccccccChHHHHHH
Confidence 4456788999999999999999754 59999999999999999999877532 110001 25799999999
Q ss_pred HHHhcccch
Q 027726 187 KRCSQKESV 195 (219)
Q Consensus 187 ~~~~~~~~~ 195 (219)
+++.+||+|
T Consensus 103 ~rv~aRpsf 111 (111)
T cd03204 103 ERVLQRESF 111 (111)
T ss_pred HHHHcCCCC
Confidence 999999986
No 91
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.34 E-value=9.1e-12 Score=84.22 Aligned_cols=95 Identities=20% Similarity=0.259 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHhcccccchhhhc---------cCCchHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCChhHHHHHhhh
Q 027726 91 LRSQARFWADYVDKNIYGIGKRIW---------SGKGEDQEAAKKEMIGFLKNMEAELGDKHFFGGESIGFVDVALVPFT 161 (219)
Q Consensus 91 ~~a~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~s~aD~~l~~~l 161 (219)
+++++++|+.+....+.+.+.... ..+++..+....++.+.++.+|..|++++|++|+++|+||+++++.+
T Consensus 2 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~g~~~slaDi~~~~~~ 81 (105)
T cd03179 2 ERAQVLRWLFFEQYSHEPYIATLRFLRVYLGLGEADAEVLAFLRERGHAALAVLEAHLAGRDFLVGDALTIADIALAAYT 81 (105)
T ss_pred cHHHHHHHHHHhhcccCccceeeeeeEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHccCccccCCCCCHHHHHHHHHH
Confidence 478899999998777776544321 11244567889999999999999998889999999999999999999
Q ss_pred hhhhhhhhhcCCcccccCchHHHHHHHHh
Q 027726 162 TWFYTYETFGNLSVEAECPKLIAWAKRCS 190 (219)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~~ 190 (219)
.++... +.. ...+|++.+|++++.
T Consensus 82 ~~~~~~----~~~-~~~~p~l~~~~~~~~ 105 (105)
T cd03179 82 HVADEG----GFD-LADYPAIRAWLARIE 105 (105)
T ss_pred Hhcccc----CCC-hHhCccHHHHHHhhC
Confidence 887642 223 367999999999873
No 92
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.33 E-value=5e-12 Score=79.15 Aligned_cols=59 Identities=15% Similarity=0.219 Sum_probs=49.1
Q ss_pred CChhhHHHHHHHHhcCCCcceeecCCCCCchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHHhh
Q 027726 12 PSSFAMRVKIALAEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYIDEV 77 (219)
Q Consensus 12 ~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~~~ 77 (219)
.+++|.+++++|++.|+||+.+.+.. . ...+|. |++|+|++||.+|+||.+|+.||.++
T Consensus 16 ~~~~~~kv~~~L~elglpye~~~~~~----~--~~~~P~-GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 16 DNASCLAVQTFLKMCNLPFNVRCRAN----A--EFMSPS-GKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCHHHHHHHHHHcCCCcEEEecCC----c--cccCCC-CcccEEEECCEEEeCHHHHHHHHhcC
Confidence 36789999999999999999874321 1 126787 99999999999999999999999763
No 93
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=99.28 E-value=2.1e-11 Score=81.37 Aligned_cols=92 Identities=23% Similarity=0.446 Sum_probs=70.3
Q ss_pred HHHHHHHhcccccchhhhccC-------CchHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCChhHHHHHhhhhhhhhhh
Q 027726 96 RFWADYVDKNIYGIGKRIWSG-------KGEDQEAAKKEMIGFLKNMEAELGDKHFFGGESIGFVDVALVPFTTWFYTYE 168 (219)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~s~aD~~l~~~l~~~~~~~ 168 (219)
+.|+.+....+.+.+...... ++...+...+++.+.++.+|++|++++|++|+++|+||+++++++.++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~t~aDi~~~~~l~~~~~~~ 81 (100)
T cd00299 2 RAWEEWADTTLEPAARRLLLLAFVGPEVDEAALEEAREELAAALAALEKLLAGRPYLAGDRFSLADIALAPVLARLDLLG 81 (100)
T ss_pred hHHHHHHHhhcCCcccceeeeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcCHHHHHHHHHHHHHHHhh
Confidence 456666666665554443322 2455678888999999999999999999999999999999999999988754
Q ss_pred hhcCCcccccCchHHHHHHHH
Q 027726 169 TFGNLSVEAECPKLIAWAKRC 189 (219)
Q Consensus 169 ~~~~~~~~~~~p~l~~~~~~~ 189 (219)
...+ ....+|++.+|++++
T Consensus 82 ~~~~--~~~~~p~l~~~~~~~ 100 (100)
T cd00299 82 PLLG--LLDEYPRLAAWYDRL 100 (100)
T ss_pred hhhh--hhccCccHHHHHHhC
Confidence 2111 236799999999874
No 94
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=99.26 E-value=1.1e-11 Score=83.08 Aligned_cols=95 Identities=20% Similarity=0.374 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHhcccccchhhhccCCchHHHHHHHHHHHHHHHHHHHhCCCC--cccCCCCChhHHHHHhhhhhhhh
Q 027726 89 SYLRSQARFWADYVDKNIYGIGKRIWSGKGEDQEAAKKEMIGFLKNMEAELGDKH--FFGGESIGFVDVALVPFTTWFYT 166 (219)
Q Consensus 89 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~--~l~G~~~s~aD~~l~~~l~~~~~ 166 (219)
+...+.+++|+++.. ............+...+.....+.+.+..++++|+++. |++|++||+||+++++.+..+..
T Consensus 3 ~~~~a~i~~W~~f~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~AD~~v~~~l~~~~~ 80 (99)
T PF14497_consen 3 PYWRALIDRWLDFSV--AFRRRKARLEKDEASGDFSREELPKALKILEKHLAERGGDFLVGDKPTLADIAVFGFLASLRW 80 (99)
T ss_dssp -TTHHHHHHHHH-GH--CCHCCHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--HHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHhccc--hhhhHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCHHHHHHHHHHHHHhh
Confidence 345677778888541 00000000111244577888999999999999998766 99999999999999999866553
Q ss_pred hhhhcCCcccccCchHHHHHHHHhc
Q 027726 167 YETFGNLSVEAECPKLIAWAKRCSQ 191 (219)
Q Consensus 167 ~~~~~~~~~~~~~p~l~~~~~~~~~ 191 (219)
. .+++.+|+|.+|++||++
T Consensus 81 ~------~~~~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 81 A------DFPKDYPNLVRWYERIEE 99 (99)
T ss_dssp C------HHTTTCHHHHHHHHHHHT
T ss_pred c------ccccccHHHHHHHHhhcC
Confidence 1 122689999999999974
No 95
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.22 E-value=6.3e-11 Score=81.45 Aligned_cols=72 Identities=21% Similarity=0.304 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHh---CCCCcccCCCCChhHHHHHhhhhhhhhhhhhcCCcccccCchHHHHHHHHhcccchhc
Q 027726 121 QEAAKKEMIGFLKNMEAEL---GDKHFFGGESIGFVDVALVPFTTWFYTYETFGNLSVEAECPKLIAWAKRCSQKESVSA 197 (219)
Q Consensus 121 ~~~~~~~l~~~l~~le~~L---~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~ 197 (219)
.+...+.+.+.++.+|..| ++++|++|+ +|+||+++++.+.++... +... .|+|.+|++++.++|+|++
T Consensus 39 ~~~~~~~~~~~~~~le~~l~~~~~~~yl~Gd-~T~ADi~l~~~~~~~~~~----~~~~---~P~l~~~~~rv~~rPsv~~ 110 (114)
T cd03194 39 SEAVQADIARIEAIWAECLARFQGGPFLFGD-FSIADAFFAPVVTRFRTY----GLPL---SPAAQAYVDALLAHPAMQE 110 (114)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CcHHHHHHHHHHHHHHHc----CCCC---CHHHHHHHHHHHCCHHHHH
Confidence 3455555666666666655 567899999 999999999999887542 2222 2999999999999999998
Q ss_pred cCC
Q 027726 198 SLA 200 (219)
Q Consensus 198 ~~~ 200 (219)
.++
T Consensus 111 ~~~ 113 (114)
T cd03194 111 WIA 113 (114)
T ss_pred HHh
Confidence 764
No 96
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=1.2e-09 Score=85.05 Aligned_cols=169 Identities=18% Similarity=0.242 Sum_probs=121.9
Q ss_pred ChhhHHHHHHHHhcCCCcceeecCCCCCchhhhhhCCCCCccceEee-CCeeeehhHHHHHHHHhhcCCCCCCCCC-CHH
Q 027726 13 SSFAMRVKIALAEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLIH-DGKPICESLIIIQYIDEVWHHKSPLMPS-DSY 90 (219)
Q Consensus 13 s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~-~g~~i~es~~I~~yL~~~~~~~~~l~p~-~~~ 90 (219)
++-|..+.+++++.+-|.+++..+- ++ .+|. |++|+|++ +|..+++-..|+.+|..... +..+-+. ...
T Consensus 17 d~~sL~~l~y~kl~~~~l~v~~ssN----~~---~s~s-g~LP~l~~~ng~~va~~~~iv~~L~k~~~-ky~~d~dl~~k 87 (313)
T KOG3028|consen 17 DPDSLAALIYLKLAGAPLKVVVSSN----PW---RSPS-GKLPYLITDNGTKVAGPVKIVQFLKKNTK-KYNLDADLSAK 87 (313)
T ss_pred ChhHHHHHHHHHHhCCCceeEeecC----CC---CCCC-CCCCeEEecCCceeccHHHHHHHHHHhcc-cCCcCccHHHH
Confidence 8899999999999996665544432 12 3576 89999995 67999999999999988522 2223232 245
Q ss_pred HHHHHHHHHHHHhcccccchhhhcc------------------------------------------C-CchHHHHHHHH
Q 027726 91 LRSQARFWADYVDKNIYGIGKRIWS------------------------------------------G-KGEDQEAAKKE 127 (219)
Q Consensus 91 ~~a~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~-~~~~~~~~~~~ 127 (219)
+.+....|..+++..+.++....+. + ......+....
T Consensus 88 q~a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~~i~~~ 167 (313)
T KOG3028|consen 88 QLADTLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTEREDQIYKD 167 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHHHHHHH
Confidence 6777778888888877666443210 0 01234566777
Q ss_pred HHHHHHHHHHHhCCCCcccCCCCChhHHHHHhhhhhhhhhhhhcCCcc---cccCchHHHHHHHHhc
Q 027726 128 MIGFLKNMEAELGDKHFFGGESIGFVDVALVPFTTWFYTYETFGNLSV---EAECPKLIAWAKRCSQ 191 (219)
Q Consensus 128 l~~~l~~le~~L~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~---~~~~p~l~~~~~~~~~ 191 (219)
..+++..|.+.|+.++|++|++||..|+.++..+..+-... .+.-.+ ...++||.+|++++..
T Consensus 168 Aska~~~LS~~Lgs~kffFgd~psslDa~lfs~la~~~~~~-Lp~~~Lq~~l~~~~NL~~~~~~i~s 233 (313)
T KOG3028|consen 168 ASKALNLLSTLLGSKKFFFGDKPSSLDALLFSYLAILLQVA-LPNDSLQVHLLAHKNLVRYVERIRS 233 (313)
T ss_pred HHHHHHHHHHHhcCceEeeCCCCchHHHHHHHHHHHHHhcc-CCchhHHHHHHhcchHHHHHHHHHH
Confidence 88899999999999999999999999999999998744322 222211 1459999999999986
No 97
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.20 E-value=7.3e-11 Score=82.37 Aligned_cols=69 Identities=22% Similarity=0.369 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcccCCCCChhHHHHHhhhhhhhhhhhhcCCcccccCchHHHHHHHHhcc
Q 027726 121 QEAAKKEMIGFLKNMEAELGDKHFFGGESIGFVDVALVPFTTWFYTYETFGNLSVEAECPKLIAWAKRCSQK 192 (219)
Q Consensus 121 ~~~~~~~l~~~l~~le~~L~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~ 192 (219)
.+.....+.+.++.+|++|++++|++|+++|+||+++++.+.++... .+..+...+|+|.+|++|+.+.
T Consensus 56 ~~~~~~~~~~~l~~l~~~L~~~~fl~Gd~~t~AD~~l~~~l~~~~~~---~~~~~~~~~p~l~~W~~r~~~~ 124 (124)
T cd03202 56 REAALANFRAALEPLRATLKGQPFLGGAAPNYADYIVFGGFQWARIV---SPFPLLEEDDPVYDWFERCLDL 124 (124)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCccCCCCCchhHHHHHHHHHHHHHc---CcccccccCChHHHHHHHHhcC
Confidence 45778889999999999999999999999999999999999888753 2334447899999999999763
No 98
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.20 E-value=7.6e-11 Score=75.57 Aligned_cols=72 Identities=24% Similarity=0.266 Sum_probs=63.2
Q ss_pred cceEEecccCChhhHHHHHHHHhcCCCcceeecCCCCCchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHH
Q 027726 3 ENVVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYID 75 (219)
Q Consensus 3 ~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~ 75 (219)
.+++||+.+.||+|.+++.+|...|++|+.+.++......++...+.. .++|++..||..+.++..|.+||.
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~-~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGA-TTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCC-CCcCeEEECCEEEcCHHHHHHHhC
Confidence 479999999999999999999999999999888765444566666776 789999999999999999999984
No 99
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=99.20 E-value=8.1e-11 Score=79.47 Aligned_cols=96 Identities=16% Similarity=0.257 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHhcccccchhhhccCC-----chHHHHHHHHHHHHHHHHHHHhCC--CCcccCCCCChhHHHHHhhhhh
Q 027726 91 LRSQARFWADYVDKNIYGIGKRIWSGK-----GEDQEAAKKEMIGFLKNMEAELGD--KHFFGGESIGFVDVALVPFTTW 163 (219)
Q Consensus 91 ~~a~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~l~~le~~L~~--~~~l~G~~~s~aD~~l~~~l~~ 163 (219)
++++++++++...+.........+..+ ........+.+.+.++.+|.+|++ ++|++|+++|+||+++++.+.+
T Consensus 2 e~~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~G~~~s~aDi~l~~~~~~ 81 (104)
T cd03192 2 EAARVDALVDTIADLRAEFAKYFYEKDGEEKKEKKKEFLKEAIPKYLKKLEKILKENGGGYLVGDKLTWADLVVFDVLDY 81 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCeeeCCCccHHHHHHHHHHHH
Confidence 466777887776554444444333222 455677888899999999999977 8999999999999999999988
Q ss_pred hhhhhhhcCCcccccCchHHHHHHHH
Q 027726 164 FYTYETFGNLSVEAECPKLIAWAKRC 189 (219)
Q Consensus 164 ~~~~~~~~~~~~~~~~p~l~~~~~~~ 189 (219)
+..... ......+|++.+|++++
T Consensus 82 ~~~~~~---~~~~~~~p~l~~~~~~~ 104 (104)
T cd03192 82 LLYLDP---KLLLKKYPKLKALRERV 104 (104)
T ss_pred HHhhCc---hhhHHhChhHHHHHHhC
Confidence 865321 11146799999999875
No 100
>PRK10638 glutaredoxin 3; Provisional
Probab=99.17 E-value=1.6e-10 Score=74.85 Aligned_cols=73 Identities=19% Similarity=0.190 Sum_probs=63.8
Q ss_pred CCcceEEecccCChhhHHHHHHHHhcCCCcceeecCCCC-CchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHH
Q 027726 1 MAENVVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFD-KSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYID 75 (219)
Q Consensus 1 M~~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~ 75 (219)
|+ ++++|+.+.||+|++++.+|..+|++|+.+.++... ..+++.+.++. .++|++..+|..|.+...+..+-.
T Consensus 1 m~-~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~-~~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 1 MA-NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGR-TTVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred CC-cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEeCHHHHHHHHH
Confidence 66 799999999999999999999999999999887653 45677888997 899999999999999888777643
No 101
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.12 E-value=3.7e-10 Score=71.04 Aligned_cols=57 Identities=23% Similarity=0.270 Sum_probs=49.1
Q ss_pred ChhhHHHHHHHHhcCCCcceeecCCCCCchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHHhh
Q 027726 13 SSFAMRVKIALAEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYIDEV 77 (219)
Q Consensus 13 s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~~~ 77 (219)
||+|.++.++|+..|++|+.+..+- ...+|. |++|+|+++|..+.||..|++||.++
T Consensus 16 sp~clk~~~~Lr~~~~~~~v~~~~n-------~~~sp~-gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 16 DPECLAVLAYLKFAGAPLKVVPSNN-------PWRSPT-GKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CHHHHHHHHHHHcCCCCEEEEecCC-------CCCCCC-CccCEEEECCEEecChHHHHHHHHHc
Confidence 8999999999999999998764431 134687 99999999999999999999999864
No 102
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=99.11 E-value=1.7e-10 Score=75.48 Aligned_cols=67 Identities=22% Similarity=0.256 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccCCCCChhHHHHHhhhhhhhhhhhhcCC---cccccCchHHHHHHHHh
Q 027726 123 AAKKEMIGFLKNMEAELGDKHFFGGESIGFVDVALVPFTTWFYTYETFGNL---SVEAECPKLIAWAKRCS 190 (219)
Q Consensus 123 ~~~~~l~~~l~~le~~L~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~---~~~~~~p~l~~~~~~~~ 190 (219)
...+++.+.++.+|++|++++|++|+++|+||+++++.+.++.... .... .....+|+|++|++++.
T Consensus 19 ~~~~~~~~~l~~le~~L~~~~yl~Gd~~t~aDi~l~~~l~~~~~~~-~~~~~~~~~~~~~p~l~~~~~r~~ 88 (88)
T cd03193 19 EIYSLAKKDLKALSDLLGDKKFFFGDKPTSLDATVFGHLASILYAP-LPNSALQLILKEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHHHHHHHhcC-CCChHHHHHHHhCcHHHHHHHHhC
Confidence 6778899999999999999999999999999999999998765421 1110 11267999999999874
No 103
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.08 E-value=7.6e-10 Score=69.59 Aligned_cols=71 Identities=27% Similarity=0.258 Sum_probs=60.9
Q ss_pred ceEEecccCChhhHHHHHHHHhcCCCcceeecCCCCCchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHH
Q 027726 4 NVVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYID 75 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~ 75 (219)
+++||..+.||+|.+++-+|...|++|+.+.++.......+...... .++|++..||..+.++..|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~-~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGA-MTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCC-CCcCeEEECCEEEeCHHHHHHHhC
Confidence 68999999999999999999999999999888765433445555565 689999999999999999999974
No 104
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.92 E-value=4.7e-09 Score=70.06 Aligned_cols=67 Identities=22% Similarity=0.291 Sum_probs=54.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCChhHHHHHhhhhhhhhhhhhcCCcccccCchHHHHHHHH
Q 027726 118 GEDQEAAKKEMIGFLKNMEAELGDKHFFGGESIGFVDVALVPFTTWFYTYETFGNLSVEAECPKLIAWAKRC 189 (219)
Q Consensus 118 ~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~ 189 (219)
+...+....++.+.+..+|++|++++| +++|+||+++++.+.++... ..+.....++|+|.+|++++
T Consensus 32 ~~~~~~~~~~~~~~l~~le~~L~~~~~---d~~TlADi~l~~~l~~~~~~--~~~~~~~~~~p~l~~w~~rm 98 (98)
T cd03205 32 QPWLERQRGKIERALDALEAELAKLPL---DPLDLADIAVACALGYLDFR--HPDLDWRAAHPALAAWYARF 98 (98)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhCCC---CCCCHHHHHHHHHHHHHHhH--ccCcchhhhChHHHHHHHhC
Confidence 455788899999999999999998888 88999999999999887642 12223237899999999875
No 105
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=98.91 E-value=1.3e-08 Score=67.91 Aligned_cols=104 Identities=25% Similarity=0.287 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHHHhcccccchhh-----hccC--CchHHHHHHHHHHHHHHHHHHHhCC-CCcccCCCCChhHHHHHh
Q 027726 88 DSYLRSQARFWADYVDKNIYGIGKR-----IWSG--KGEDQEAAKKEMIGFLKNMEAELGD-KHFFGGESIGFVDVALVP 159 (219)
Q Consensus 88 ~~~~~a~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~l~~~l~~le~~L~~-~~~l~G~~~s~aD~~l~~ 159 (219)
|..++++.++...|+.+.|.++-.. .|.+ .....+.....+.+.+...+..|+. ++||+|+ .|+||..+++
T Consensus 1 D~~~RArAR~vqAwlrSdf~~lR~Erpt~vvf~~~~~~pLs~~a~~~a~kL~~~a~~ll~~g~~~LFGe-wsIAD~dlA~ 79 (117)
T PF14834_consen 1 DRQERARARQVQAWLRSDFMALRQERPTNVVFRGARKPPLSEAAQAAAQKLIAVAERLLADGGPNLFGE-WSIADADLAL 79 (117)
T ss_dssp SHHHHHHHHHHHHHHHHS-HHHHHHS-THHHHS--------HHHHHHHHHHHHHHHHHTTT--SSTTSS---HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcccHHHHhhCChhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCcccc-chHHHHHHHH
Confidence 4678999999999999998776443 2232 2445677888888889999998864 7899997 9999999999
Q ss_pred hhhhhhhhhhhcCCcccccCchHHHHHHHHhcccchhccC
Q 027726 160 FTTWFYTYETFGNLSVEAECPKLIAWAKRCSQKESVSASL 199 (219)
Q Consensus 160 ~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~ 199 (219)
+++++... +.+++ +.++.|.++.-++|++++++
T Consensus 80 ml~Rl~~~----gd~vP---~~l~~Ya~~qwqrpsVQ~Wl 112 (117)
T PF14834_consen 80 MLNRLVTY----GDPVP---ERLADYAERQWQRPSVQRWL 112 (117)
T ss_dssp HHHHHHTT----T-------HHHHHHHHHHHT-HHHHHHH
T ss_pred HHHHHHHc----CCCCC---HHHHHHHHHHHCCHHHHHHH
Confidence 99998863 23333 78999999999999999875
No 106
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.90 E-value=3e-09 Score=74.35 Aligned_cols=72 Identities=15% Similarity=0.216 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCChhHHHHHhhhhhhhhhh-hhcCCc-ccccCchHHHHHHHHh
Q 027726 119 EDQEAAKKEMIGFLKNMEAELGDKHFFGGESIGFVDVALVPFTTWFYTYE-TFGNLS-VEAECPKLIAWAKRCS 190 (219)
Q Consensus 119 ~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~s~aD~~l~~~l~~~~~~~-~~~~~~-~~~~~p~l~~~~~~~~ 190 (219)
...++....+.+.++.|+..|++++||+|++||.+|+++++++..+.... +..... ...++|+|.+|++|+.
T Consensus 53 ~~~ee~~~~~~~~l~aLs~~Lg~~~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~~~~~~pnL~~y~~Ri~ 126 (126)
T cd03211 53 KTLDQVIEEVDQCCQALSQRLGTQPYFFGDQPTELDALVFGHLFTILTTQLPNDELAEKVKKYSNLLAFCRRIE 126 (126)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCcHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHhcC
Confidence 35678888899999999999999999999999999999999987775321 000111 1378999999999973
No 107
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.86 E-value=1.1e-08 Score=64.50 Aligned_cols=69 Identities=17% Similarity=0.229 Sum_probs=58.4
Q ss_pred cceEEecccCChhhHHHHHHHHhcCCCcceeecCCC-CCchhhhhhCCCCCccceEeeCCeeeehhHHHHH
Q 027726 3 ENVVLLGFWPSSFAMRVKIALAEKGIKYESKEENLF-DKSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQ 72 (219)
Q Consensus 3 ~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~ 72 (219)
++++||+.+.||+|++++.+|..+||+|+.+.++.. +..+++.+.++. .++|++..||..|.+.....+
T Consensus 1 ~~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~-~~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 1 GRVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGS-SVVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred CEEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEeCHHHHHh
Confidence 368999999999999999999999999999888754 235677788887 899999999998887766554
No 108
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.83 E-value=1.2e-08 Score=65.57 Aligned_cols=62 Identities=13% Similarity=0.183 Sum_probs=50.2
Q ss_pred ceEEecccCChhhHHHHHHHHhcCCCcceeecCCCCCchhhhhhCCCCCccceEeeCCeeeeh
Q 027726 4 NVVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLIHDGKPICE 66 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~i~e 66 (219)
+++||..+.||+|.+++.+|..+||+|+.+.++-.....+....++. .++|+++.+|..+.+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~-~~vPvv~i~~~~~~G 63 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQGF-RQLPVVIAGDLSWSG 63 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCC-CCcCEEEECCEEEec
Confidence 68999999999999999999999999999888754333333444676 799999988776554
No 109
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=98.81 E-value=9.5e-09 Score=72.83 Aligned_cols=72 Identities=18% Similarity=0.301 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCChhHHHHHhhhhhhhhhhhhcCC---cccccCchHHHHHHHHhc
Q 027726 119 EDQEAAKKEMIGFLKNMEAELGDKHFFGGESIGFVDVALVPFTTWFYTYETFGNL---SVEAECPKLIAWAKRCSQ 191 (219)
Q Consensus 119 ~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~---~~~~~~p~l~~~~~~~~~ 191 (219)
...++...++.+.+..|+..|++++|++|++||.+|+++++.+..+.... .... .....+|+|.+|++|+.+
T Consensus 60 ~~~~~~~~~a~~~l~~l~~~L~~~~~~~Gd~~t~~D~~~~~~l~~~~~~~-~~~~~l~~~~~~~pnL~~~~~ri~~ 134 (137)
T cd03212 60 EVEAEIYRDAKECLNLLSQRLGESQFFFGDTPTSLDALVFGYLAPLLKAP-LPNNKLQNHLKQCPNLCRFCDRILS 134 (137)
T ss_pred hhHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcHHHHHHHHHHHHHHhcc-CCChHHHHHHHHCcHHHHHHHHHHH
Confidence 35677888899999999999999999999999999999999987665321 1110 113789999999999985
No 110
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.79 E-value=2.1e-08 Score=62.84 Aligned_cols=70 Identities=19% Similarity=0.153 Sum_probs=56.2
Q ss_pred ceEEecccCChhhHHHHHHHHhcCCCcceeecCCCC-CchhhhhhCCCCCccceEeeCCeee--ehhHHHHHHH
Q 027726 4 NVVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFD-KSPLLLEMNPVDKKIPVLIHDGKPI--CESLIIIQYI 74 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~~g~~i--~es~~I~~yL 74 (219)
+++||+.+.||+|++++.+|...|++|..+.++... ..+++.+.++. ..+|++..+|..+ +++..|.++|
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~-~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQ-RGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCC-CcccEEEECCEEEeeCCHHHHHHHh
Confidence 489999999999999999999999999887776442 23456677787 8999999888877 5666666655
No 111
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=98.77 E-value=2.5e-08 Score=70.67 Aligned_cols=66 Identities=21% Similarity=0.332 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHhC-CCCcccCCCCChhHHHHHhhhhhhhhhhhhcCC-cccccCchHHHHHHHHhc
Q 027726 122 EAAKKEMIGFLKNMEAELG-DKHFFGGESIGFVDVALVPFTTWFYTYETFGNL-SVEAECPKLIAWAKRCSQ 191 (219)
Q Consensus 122 ~~~~~~l~~~l~~le~~L~-~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~-~~~~~~p~l~~~~~~~~~ 191 (219)
...+..|...++.+-+.++ +++|+.|++||+||+++++.+..+..+ .++ .+ .++|+|.+|++++.+
T Consensus 78 ~D~r~~L~~a~~~w~~~~~~~~~FlaGd~ptIADisvyg~l~s~e~~---~~~~Dl-~~~p~I~~W~eRm~~ 145 (149)
T cd03197 78 DDVREWLYDALNTWVAALGKDRQFHGGSKPNLADLAVYGVLRSVEGH---PAFKDM-VEETKIGEWYERMDA 145 (149)
T ss_pred chHHHHHHHHHHHHHHHhcCCCCccCCCCCCHHHHHHHHHHHHHHHh---ccccch-hhCcCHHHHHHHHHH
Confidence 4456666666666655564 568999999999999999999888763 344 33 689999999999985
No 112
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.77 E-value=3.3e-08 Score=61.60 Aligned_cols=69 Identities=19% Similarity=0.160 Sum_probs=59.2
Q ss_pred ceEEecccCChhhHHHHHHHHhcCCCcceeecCCCC-CchhhhhhCCCCCccceEeeCCeeeehhHHHHHH
Q 027726 4 NVVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFD-KSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQY 73 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~y 73 (219)
++++|+.+.||+|++++.+|..+|++|+.+.++... ...++...++. .++|++..+|..+.++..|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~-~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGW-PTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEecHHHHHHh
Confidence 478999999999999999999999999988776553 34666778887 8999999999999999888764
No 113
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.72 E-value=3.8e-08 Score=61.58 Aligned_cols=63 Identities=17% Similarity=0.238 Sum_probs=53.2
Q ss_pred ceEEecccCChhhHHHHHHHHhcCCCcceeecCCC-CCchhhhhhCCCCCccceEeeCCeeeehh
Q 027726 4 NVVLLGFWPSSFAMRVKIALAEKGIKYESKEENLF-DKSPLLLEMNPVDKKIPVLIHDGKPICES 67 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~L~~~g~~i~es 67 (219)
.+++|+.+.||+|.+++.+|..+|++|..+.++.. +..+++.+.+|. +.+|++.++|..+.+.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~-~~vP~i~~~~~~i~g~ 64 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGY-RSVPVVVIGDEHLSGF 64 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCC-cccCEEEECCEEEecC
Confidence 37899999999999999999999999998888754 234567788897 8999999988777654
No 114
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.66 E-value=1.1e-07 Score=59.99 Aligned_cols=71 Identities=14% Similarity=0.137 Sum_probs=56.6
Q ss_pred ceEEecccCChhhHHHHHHHHhcCCCcceeecCCC-CCchhhhhhCCCCC-ccceEeeCCeeeehhHHHHHHHH
Q 027726 4 NVVLLGFWPSSFAMRVKIALAEKGIKYESKEENLF-DKSPLLLEMNPVDK-KIPVLIHDGKPICESLIIIQYID 75 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~-~vP~L~~~g~~i~es~~I~~yL~ 75 (219)
+++||+.+.||+|.+++-+|..+|++|+.+.++.. +...++...... . .+|++..+|..+.+...+.++-.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~-~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGG-RRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCC-CCccCEEEECCEEEeChHHHHHHHh
Confidence 47899999999999999999999999999888754 222344444332 3 89999999999999988887643
No 115
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.63 E-value=1.2e-07 Score=60.10 Aligned_cols=70 Identities=13% Similarity=0.183 Sum_probs=53.8
Q ss_pred ceEEecccCChhhHHHHHHHHhcCCCcceeecCCCCC-chhhhhhC-CCCCccceEe-eCCeeeehh--HHHHHHH
Q 027726 4 NVVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFDK-SPLLLEMN-PVDKKIPVLI-HDGKPICES--LIIIQYI 74 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~-~~~~~~~~-p~~~~vP~L~-~~g~~i~es--~~I~~yL 74 (219)
+++||+.++||+|++++-+|...|++|+.+.++.... ...+..+| +. ..+|+++ ++|..+.++ ..|..+|
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~-~~vP~i~~~~g~~l~~~~~~~~~~~l 75 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGN-MTVPTVKFADGSFLTNPSAAQVKAKL 75 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCC-ceeCEEEECCCeEecCCCHHHHHHHh
Confidence 4899999999999999999999999999877765432 34555666 76 7999997 577777655 4455554
No 116
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=3.4e-07 Score=58.59 Aligned_cols=69 Identities=17% Similarity=0.214 Sum_probs=55.2
Q ss_pred ceEEecccCChhhHHHHHHHHhcCCCcceeecCCCC--Cchhhh-hhCCCCCccceEeeCCeeeehhHHHHHH
Q 027726 4 NVVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFD--KSPLLL-EMNPVDKKIPVLIHDGKPICESLIIIQY 73 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~--~~~~~~-~~~p~~~~vP~L~~~g~~i~es~~I~~y 73 (219)
++++|..+.||||.++.-+|..+|++|+.+.++..+ ...++. ..++. .++|++..||..+.......++
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~-~tvP~I~i~~~~igg~~d~~~~ 73 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQ-RTVPQIFIGGKHVGGCDDLDAL 73 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCC-CCcCEEEECCEEEeCcccHHHH
Confidence 589999999999999999999999999999888775 443444 44477 8999999988777655444443
No 117
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.55 E-value=3.1e-07 Score=58.65 Aligned_cols=71 Identities=11% Similarity=0.095 Sum_probs=58.4
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecCCCC-CchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHHh
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFD-KSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYIDE 76 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~~ 76 (219)
+++|+.+.||+|.+++-+|..+|++|+.+.++... ...++...... ..+|++..+|..+.+...+.++-.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~-~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGR-RTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCC-CCcCEEEECCEEEcChHHHHHHHHc
Confidence 57999999999999999999999999999887552 23455555555 7899999999999888887776554
No 118
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.53 E-value=2.3e-07 Score=58.21 Aligned_cols=57 Identities=19% Similarity=0.275 Sum_probs=44.9
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecCCCCCchhhhhhCCCCCccceEeeCCe
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLIHDGK 62 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~ 62 (219)
++||+.+.||+|++++-+|..+|++|+.+.++-.....+....... ..+|++..+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~-~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGF-RQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCC-cccCEEEECCC
Confidence 5899999999999999999999999999888755333333333465 68999998654
No 119
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.43 E-value=3.3e-07 Score=55.26 Aligned_cols=59 Identities=31% Similarity=0.377 Sum_probs=49.1
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecCCC-CCchhhhhhCCCCCccceEeeCCeee
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEENLF-DKSPLLLEMNPVDKKIPVLIHDGKPI 64 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~L~~~g~~i 64 (219)
+++|+.+.||+|.+++-+|..+|++|+.+.++.. +..+++.+.+.. .++|++..||..|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~-~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGV-RTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSS-SSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCC-CccCEEEECCEEC
Confidence 5899999999999999999999999999999876 344555565454 6899999988754
No 120
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.41 E-value=2.1e-06 Score=55.05 Aligned_cols=72 Identities=21% Similarity=0.223 Sum_probs=60.3
Q ss_pred ceEEecccCChhhHHHHHHHHhcCCCcceeecCCCCCc----hhhhhhCCCCCccceEeeCCeeeehhHHHHHHHHh
Q 027726 4 NVVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFDKS----PLLLEMNPVDKKIPVLIHDGKPICESLIIIQYIDE 76 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~----~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~~ 76 (219)
++++|+.+.||+|.+++-+|...+++|+...++..+.. ..+.+.+.. ..+|++..+|..+.++..|.++..+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~-~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQ-RTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCC-CCCCeEEECCEEEcCHHHHHHHHHc
Confidence 47899999999999999999999999999988876542 234455555 6899999999999999999888754
No 121
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.41 E-value=2.4e-06 Score=56.98 Aligned_cols=70 Identities=16% Similarity=0.138 Sum_probs=57.4
Q ss_pred cceEEecccCChhhHHHHHHHHhcCCCcceeecCCCCCch----hhhhhCCCCCccceEeeCCeeeehhHHHHHH
Q 027726 3 ENVVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFDKSP----LLLEMNPVDKKIPVLIHDGKPICESLIIIQY 73 (219)
Q Consensus 3 ~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~----~~~~~~p~~~~vP~L~~~g~~i~es~~I~~y 73 (219)
.++++|+.+.||||.+++-+|...|++|+.+.++-.+... .+...+.. .++|.+..+|..|.+...+...
T Consensus 8 ~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~-~tvP~Vfi~g~~iGG~ddl~~l 81 (99)
T TIGR02189 8 KAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCS-PAVPAVFVGGKLVGGLENVMAL 81 (99)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCC-CCcCeEEECCEEEcCHHHHHHH
Confidence 5799999999999999999999999999998888553322 34455565 7899999999999888777664
No 122
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.30 E-value=4.2e-06 Score=54.22 Aligned_cols=75 Identities=20% Similarity=0.225 Sum_probs=60.2
Q ss_pred ceEEecccCChhhHHHHHHHHh-----cCCCcceeecCCCC-CchhhhhhC--CCCCccceEeeCCeeeehhHHHHHHHH
Q 027726 4 NVVLLGFWPSSFAMRVKIALAE-----KGIKYESKEENLFD-KSPLLLEMN--PVDKKIPVLIHDGKPICESLIIIQYID 75 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~-----~gi~~~~~~v~~~~-~~~~~~~~~--p~~~~vP~L~~~g~~i~es~~I~~yL~ 75 (219)
.+++|+.+.||+|.+++-+|.. .|++|+.+.++... ..+++.... +. ..+|++..||..+.+...|.+++.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~-~~vP~ifi~g~~igg~~~~~~~~~ 80 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPV-ETVPQIFVDQKHIGGCTDFEAYVK 80 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCC-CcCCEEEECCEEEcCHHHHHHHHH
Confidence 5999999999999999999999 89999988887432 123343322 22 469999999999999999999998
Q ss_pred hhcC
Q 027726 76 EVWH 79 (219)
Q Consensus 76 ~~~~ 79 (219)
+.++
T Consensus 81 ~~~~ 84 (85)
T PRK11200 81 ENLG 84 (85)
T ss_pred Hhcc
Confidence 8765
No 123
>PHA03050 glutaredoxin; Provisional
Probab=98.26 E-value=7.4e-06 Score=55.47 Aligned_cols=69 Identities=12% Similarity=0.175 Sum_probs=56.6
Q ss_pred cceEEecccCChhhHHHHHHHHhcCC---CcceeecCCCCC----chhhhhhCCCCCccceEeeCCeeeehhHHHHH
Q 027726 3 ENVVLLGFWPSSFAMRVKIALAEKGI---KYESKEENLFDK----SPLLLEMNPVDKKIPVLIHDGKPICESLIIIQ 72 (219)
Q Consensus 3 ~~~~L~~~~~s~~~~~v~~~l~~~gi---~~~~~~v~~~~~----~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~ 72 (219)
.++++|..++||||.+++-+|...|+ +|+.+.++-... ..++.+.+-. .+||.+..+|..|-+...+..
T Consensus 13 ~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~-~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 13 NKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGG-RTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCC-CCcCEEEECCEEEeChHHHHH
Confidence 57999999999999999999999999 788888874322 3455666666 689999999999888877666
No 124
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.14 E-value=1.5e-05 Score=51.75 Aligned_cols=74 Identities=16% Similarity=0.186 Sum_probs=56.2
Q ss_pred eEEecccCChhhHHHHHHHHhcC-----CCcceeecCCCC-CchhhhhhCC--CCCccceEeeCCeeeehhHHHHHHHHh
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKG-----IKYESKEENLFD-KSPLLLEMNP--VDKKIPVLIHDGKPICESLIIIQYIDE 76 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~g-----i~~~~~~v~~~~-~~~~~~~~~p--~~~~vP~L~~~g~~i~es~~I~~yL~~ 76 (219)
+++|+.++||+|.+++-+|...+ ++|+.+.++... ...++....- . ..+|++..||..+.++..|.+++.+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~-~tVP~ifi~g~~igG~~dl~~~~~~ 80 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPV-ETVPQIFVDEKHVGGCTDFEQLVKE 80 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCC-CCcCeEEECCEEecCHHHHHHHHHh
Confidence 68999999999999999999985 567666665322 1233433322 1 4799999999999999999999988
Q ss_pred hcC
Q 027726 77 VWH 79 (219)
Q Consensus 77 ~~~ 79 (219)
.+.
T Consensus 81 ~~~ 83 (86)
T TIGR02183 81 NFD 83 (86)
T ss_pred ccc
Confidence 764
No 125
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.13 E-value=2.1e-05 Score=50.54 Aligned_cols=71 Identities=21% Similarity=0.290 Sum_probs=57.4
Q ss_pred eEEecccCChhhHHHHHHHHhcCCC--cceeecCCCCCch----hhhhhCCCCCccceEeeCCeeeehhHHHHHHHHh
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIK--YESKEENLFDKSP----LLLEMNPVDKKIPVLIHDGKPICESLIIIQYIDE 76 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~--~~~~~v~~~~~~~----~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~~ 76 (219)
+++|+.++||+|.+++-+|...+++ |+...++..+... .+.+.... ..+|++..+|..+.++..+.+...+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~-~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQ-RTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCC-CCCCeEEECCEEEcCHHHHHHHHHc
Confidence 4789999999999999999999999 8888887654332 24455554 6799999999999999888887654
No 126
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.08 E-value=2e-05 Score=52.34 Aligned_cols=71 Identities=20% Similarity=0.116 Sum_probs=54.6
Q ss_pred cceEEecc-----cCChhhHHHHHHHHhcCCCcceeecCCCC-CchhhhhhCCCCCccceEeeCCeeeehhHHHHHHH
Q 027726 3 ENVVLLGF-----WPSSFAMRVKIALAEKGIKYESKEENLFD-KSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYI 74 (219)
Q Consensus 3 ~~~~L~~~-----~~s~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL 74 (219)
.++.+|.. +.||||.+++-+|..+|++|+.+.++-.. ...++...+.. .++|.+..+|..|-+...+.+..
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~-~tvP~vfi~g~~iGG~ddl~~l~ 88 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNW-PTIPQLYVKGEFVGGCDIIMEMY 88 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCC-CCCCEEEECCEEEeChHHHHHHH
Confidence 46888865 78999999999999999999988775321 12344455665 68999999999888887776643
No 127
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.02 E-value=3.1e-05 Score=50.68 Aligned_cols=71 Identities=18% Similarity=0.141 Sum_probs=55.6
Q ss_pred cceEEecc-----cCChhhHHHHHHHHhcCCCcceeecCCCC-CchhhhhhCCCCCccceEeeCCeeeehhHHHHHHH
Q 027726 3 ENVVLLGF-----WPSSFAMRVKIALAEKGIKYESKEENLFD-KSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYI 74 (219)
Q Consensus 3 ~~~~L~~~-----~~s~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL 74 (219)
.++++|.. +.||||.+++-+|...|++|+.+.++... ...++.+.+.. .++|.+..+|..|.+...+.+..
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~-~tvP~vfi~g~~iGG~~~l~~l~ 84 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNW-PTFPQLYVNGELVGGCDIVKEMH 84 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCC-CCCCEEEECCEEEeCHHHHHHHH
Confidence 46788865 58999999999999999999998886442 12344455555 68999999999998888877754
No 128
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=98.00 E-value=3e-05 Score=48.35 Aligned_cols=55 Identities=20% Similarity=0.256 Sum_probs=47.1
Q ss_pred CChhhHHHHHHHHhcCCC---cceeecCCCCCchhhhhhCCCCCccceEee-CCeeeehhHHHHHHH
Q 027726 12 PSSFAMRVKIALAEKGIK---YESKEENLFDKSPLLLEMNPVDKKIPVLIH-DGKPICESLIIIQYI 74 (219)
Q Consensus 12 ~s~~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~-~g~~i~es~~I~~yL 74 (219)
.+|-|..+.++|...+.+ |+.+..+-. ..+|. |++|+|.+ ++..+.+-..|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n~-------~~Spt-g~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNNP-------WLSPT-GELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCCC-------CcCCC-CCCCEEEECCCcEEECHHHHHHhh
Confidence 389999999999999999 776655421 35787 99999999 899999999999998
No 129
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.72 E-value=0.00013 Score=61.16 Aligned_cols=70 Identities=13% Similarity=0.092 Sum_probs=54.6
Q ss_pred CCcceEEecccCChhhHHHHHHHHhcCCCcceeecCCCCCchhhh-hh--------CCCCCccceEeeCCeeeehhHHHH
Q 027726 1 MAENVVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFDKSPLLL-EM--------NPVDKKIPVLIHDGKPICESLIII 71 (219)
Q Consensus 1 M~~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~-~~--------~p~~~~vP~L~~~g~~i~es~~I~ 71 (219)
|. ++++|+.+.||+|.++.-+|..+||+|+.+.++-.....++. .. ... ..||++..||..|.+-..+.
T Consensus 1 m~-~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~-~tvP~ifi~~~~igGf~~l~ 78 (410)
T PRK12759 1 MV-EVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHI-RTVPQIFVGDVHIGGYDNLM 78 (410)
T ss_pred CC-cEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCC-CccCeEEECCEEEeCchHHH
Confidence 55 799999999999999999999999999998887433222322 21 344 57999999999888887766
Q ss_pred H
Q 027726 72 Q 72 (219)
Q Consensus 72 ~ 72 (219)
.
T Consensus 79 ~ 79 (410)
T PRK12759 79 A 79 (410)
T ss_pred H
Confidence 5
No 130
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=7.4e-05 Score=62.79 Aligned_cols=117 Identities=16% Similarity=0.211 Sum_probs=80.6
Q ss_pred CCeeeehhHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHhcccccchhhhccCCchHHHHHHHHHHHHHHHHHHHh
Q 027726 60 DGKPICESLIIIQYIDEVWHHKSPLMPSDSYLRSQARFWADYVDKNIYGIGKRIWSGKGEDQEAAKKEMIGFLKNMEAEL 139 (219)
Q Consensus 60 ~g~~i~es~~I~~yL~~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L 139 (219)
+|..+.++..+..|..+.....+.+++.+ .++.+++.|+++.... ....+...+..++.+|
T Consensus 44 d~~~l~~a~~~~~~~~~~~~~~~~lf~~~-~d~~~vd~w~~~s~~~------------------~~~~~s~~~~~ld~~l 104 (712)
T KOG1147|consen 44 DGRKLNGATEPVVYSAALAKADPKLFGNN-IDRSQVDHWVSFSSTF------------------SFDEISSSLSELDKFL 104 (712)
T ss_pred ccccccCCccchhhhhhhcccCHhHcCCc-ccHHHHHHHHHHhhhc------------------chHHHHHHHHHHHhhh
Confidence 45556666666677665544355688876 7899999999987652 3345677788999999
Q ss_pred CCCCcccCCCCChhHHHHHhhhhhhhhhhhhcCCcccccCchHHHHHHHHhcccchhc
Q 027726 140 GDKHFFGGESIGFVDVALVPFTTWFYTYETFGNLSVEAECPKLIAWAKRCSQKESVSA 197 (219)
Q Consensus 140 ~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~ 197 (219)
.-..||+|.++|+||+++++.++.-.... ......+.+-++.+|++-....++.++
T Consensus 105 ~~~t~lvg~sls~Ad~aiw~~l~~n~~~~--~~lk~~k~~~~v~Rw~~~~~~~~a~~~ 160 (712)
T KOG1147|consen 105 VLRTFLVGNSLSIADFAIWGALHSNGMRQ--EQLKAKKDYQNVERWYDLPEFQEAHNK 160 (712)
T ss_pred hHHHHhhccchhHHHHHHHHHHhcccchH--HHHHhhCCchhhhhhcCcHhHHHHHHH
Confidence 88899999999999999999986532111 011112567889999884443333333
No 131
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=97.42 E-value=0.00064 Score=47.49 Aligned_cols=68 Identities=21% Similarity=0.287 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcccCCCCChhHHHHHhhhhhhhhhhhhcCCcccccCchHHHHHHHHhcccch
Q 027726 121 QEAAKKEMIGFLKNMEAELGDKHFFGGESIGFVDVALVPFTTWFYTYETFGNLSVEAECPKLIAWAKRCSQKESV 195 (219)
Q Consensus 121 ~~~~~~~l~~~l~~le~~L~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~ 195 (219)
......+++..|..+|..|.......| ++|+-|+.+++.|+.+.. ..+..++ |+|++|++++.+...+
T Consensus 57 t~~~i~~l~~~L~~Le~ll~~~~~~n~-~LS~dDi~lFp~LR~Lti---vkgi~~P---~~V~~Y~~~~s~~t~V 124 (132)
T PF04399_consen 57 TPELIAELNADLEELEPLLASPNAVNG-ELSIDDIILFPILRSLTI---VKGIQWP---PKVRAYMDRMSKATGV 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHHH-SCTTBTTS-S--HHHHHHHHHHHHHCT---CTTS------HHHHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHHHHHHhccccccCC-CCCHHHHHHHHHHhhhhh---ccCCcCC---HHHHHHHHHHHHHcCC
Confidence 457788899999999999985554444 899999999999998776 5566664 8999999999876443
No 132
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.40 E-value=0.0008 Score=48.07 Aligned_cols=69 Identities=16% Similarity=0.178 Sum_probs=54.6
Q ss_pred ceEEeccc------CChhhHHHHHHHHhcCCCcceeecCCCC-CchhhhhhCC----CCCccceEeeCCeeeehhHHHHH
Q 027726 4 NVVLLGFW------PSSFAMRVKIALAEKGIKYESKEENLFD-KSPLLLEMNP----VDKKIPVLIHDGKPICESLIIIQ 72 (219)
Q Consensus 4 ~~~L~~~~------~s~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p----~~~~vP~L~~~g~~i~es~~I~~ 72 (219)
+++||..+ ++|+|.+++-+|..+||+|+++.++... ..+++.+... . ..+|.+-.+|..|-+...+.+
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~-~tvPqVFI~G~~IGG~del~~ 79 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKA-VSLPRVFVDGRYLGGAEEVLR 79 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCC-CCCCEEEECCEEEecHHHHHH
Confidence 47899998 8999999999999999999998887652 2344444321 2 579999999999988888777
Q ss_pred H
Q 027726 73 Y 73 (219)
Q Consensus 73 y 73 (219)
.
T Consensus 80 L 80 (147)
T cd03031 80 L 80 (147)
T ss_pred H
Confidence 4
No 133
>PRK10824 glutaredoxin-4; Provisional
Probab=97.36 E-value=0.0011 Score=45.30 Aligned_cols=71 Identities=18% Similarity=0.155 Sum_probs=54.9
Q ss_pred cceEEecc-----cCChhhHHHHHHHHhcCCCcceeecCCC-CCchhhhhhCCCCCccceEeeCCeeeehhHHHHHHH
Q 027726 3 ENVVLLGF-----WPSSFAMRVKIALAEKGIKYESKEENLF-DKSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYI 74 (219)
Q Consensus 3 ~~~~L~~~-----~~s~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL 74 (219)
.++.+|.. +.||||.++.-+|...|++|..+.++-. +-...+...+-. .++|-+-.+|..|-++..+....
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~-~TVPQIFI~G~~IGG~ddl~~l~ 91 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANW-PTFPQLWVDGELVGGCDIVIEMY 91 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCC-CCCCeEEECCEEEcChHHHHHHH
Confidence 46788876 4899999999999999999998777643 223344555655 68999999999998887777643
No 134
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0019 Score=43.17 Aligned_cols=72 Identities=15% Similarity=0.201 Sum_probs=59.2
Q ss_pred cceEEecccCChhhHHHHHHHHhcCCCcceeecCCCCCchhh----hhhCCCCCccceEeeCCeeeehhHHHHHHHH
Q 027726 3 ENVVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFDKSPLL----LEMNPVDKKIPVLIHDGKPICESLIIIQYID 75 (219)
Q Consensus 3 ~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~----~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~ 75 (219)
.++.+|.-++||||.++.-+|...|+++.++++|-.+...++ .++.-. .++|.+-.+|..|-++..+..+-.
T Consensus 14 ~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~-~tvP~vFI~Gk~iGG~~dl~~lh~ 89 (104)
T KOG1752|consen 14 NPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQ-RTVPNVFIGGKFIGGASDLMALHK 89 (104)
T ss_pred CCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCC-CCCCEEEECCEEEcCHHHHHHHHH
Confidence 578999999999999999999999999999999877544343 344545 589999999999988888877543
No 135
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=97.14 E-value=0.0024 Score=44.26 Aligned_cols=67 Identities=16% Similarity=0.188 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCcccCCCCChhHHHHHhhhhhhhhhhhhcCCcccccCchHHHHHHHHhcccch
Q 027726 122 EAAKKEMIGFLKNMEAELGDKHFFGGESIGFVDVALVPFTTWFYTYETFGNLSVEAECPKLIAWAKRCSQKESV 195 (219)
Q Consensus 122 ~~~~~~l~~~l~~le~~L~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~ 195 (219)
.....++...|..++..+..... +++.+|+-|+.+++.|+.+.. ..+..++ |+|..|++++.+...+
T Consensus 59 ~~~i~~l~~~L~~l~~ll~~~~~-~n~~ls~DDi~lFp~LR~Lt~---vkgi~~P---~~V~~Y~~~~s~~t~V 125 (128)
T cd03199 59 PQYIAALNALLEELDPLILSSEA-VNGQLSTDDIILFPILRNLTL---VKGLVFP---PKVKAYLERMSALTKV 125 (128)
T ss_pred HHHHHHHHHHHHHHHHHHcCccc-cCCcCCHHHHHHHHHHhhhhh---hcCCCCC---HHHHHHHHHHHHHhCC
Confidence 36777888899999999954343 456799999999999998776 4556654 8899999999876443
No 136
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0035 Score=38.61 Aligned_cols=63 Identities=24% Similarity=0.221 Sum_probs=47.8
Q ss_pred CCcceEEecccCChhhHHHHHHHHhcCCCcceeecCCC-----------CCchhhh--hhCCCCCccceEe-eCCeeee
Q 027726 1 MAENVVLLGFWPSSFAMRVKIALAEKGIKYESKEENLF-----------DKSPLLL--EMNPVDKKIPVLI-HDGKPIC 65 (219)
Q Consensus 1 M~~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~-----------~~~~~~~--~~~p~~~~vP~L~-~~g~~i~ 65 (219)
|+ +++||+...||-|-...-.|+-.++.|+.+.+... +..++|- +.|-. --+|+|. +||.++.
T Consensus 1 ms-kp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gy-iGIPall~~d~~vVl 77 (85)
T COG4545 1 MS-KPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGY-IGIPALLTDDGKVVL 77 (85)
T ss_pred CC-CceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCc-ccceEEEeCCCcEEE
Confidence 66 67999999999999999999999999999888533 3445553 23443 4589998 4666655
No 137
>PTZ00062 glutaredoxin; Provisional
Probab=96.92 E-value=0.004 Score=47.05 Aligned_cols=70 Identities=21% Similarity=0.120 Sum_probs=53.1
Q ss_pred cceEEecc-----cCChhhHHHHHHHHhcCCCcceeecCCCC-CchhhhhhCCCCCccceEeeCCeeeehhHHHHHH
Q 027726 3 ENVVLLGF-----WPSSFAMRVKIALAEKGIKYESKEENLFD-KSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQY 73 (219)
Q Consensus 3 ~~~~L~~~-----~~s~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~y 73 (219)
.++.||.. +.||||.++.-+|...|++|....++-.+ ....+...+-. ..+|.+-.+|..|-+...+.+.
T Consensus 113 ~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~-~TvPqVfI~G~~IGG~d~l~~l 188 (204)
T PTZ00062 113 HKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNW-PTYPQLYVNGELIGGHDIIKEL 188 (204)
T ss_pred CCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCC-CCCCeEEECCEEEcChHHHHHH
Confidence 46788855 57999999999999999999987776432 12344455555 6799999999988887766663
No 138
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=96.82 E-value=0.0049 Score=37.54 Aligned_cols=58 Identities=17% Similarity=0.157 Sum_probs=39.5
Q ss_pred ceEEecccCChhhHHHHHHHHhc-----CCCcceeecCCCCCchhhhhhCCCCCccceEeeCCeeee
Q 027726 4 NVVLLGFWPSSFAMRVKIALAEK-----GIKYESKEENLFDKSPLLLEMNPVDKKIPVLIHDGKPIC 65 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~i~ 65 (219)
++++|+.++||+|.++.-++... +++|..+.+ .+ .+++...... ..+|++..+|..++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~--~~-~~~l~~~~~i-~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDA--AE-FPDLADEYGV-MSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEc--cc-CHhHHHHcCC-cccCEEEECCEEEE
Confidence 47899999999999998888765 455544443 33 2333333333 46999998887654
No 139
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=96.81 E-value=0.0015 Score=44.49 Aligned_cols=34 Identities=18% Similarity=0.158 Sum_probs=30.9
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecCCC
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEENLF 38 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~ 38 (219)
++||+.+.||+|.+++-+|..+|++|+.+.+.-.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~ 34 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEE 34 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCC
Confidence 5899999999999999999999999999887543
No 140
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=96.77 E-value=0.0018 Score=43.57 Aligned_cols=33 Identities=24% Similarity=0.211 Sum_probs=30.4
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecCC
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEENL 37 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~ 37 (219)
+++|+.+.||+|++++-+|..+|++|+++.+.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLK 33 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeecc
Confidence 589999999999999999999999999988753
No 141
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=96.77 E-value=0.002 Score=45.17 Aligned_cols=32 Identities=19% Similarity=0.156 Sum_probs=30.4
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecC
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEEN 36 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 36 (219)
+++|+.+.|++|++++-+|..+||+|+++.+.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~ 33 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIF 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeecc
Confidence 89999999999999999999999999998875
No 142
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=96.65 E-value=0.0028 Score=43.39 Aligned_cols=32 Identities=22% Similarity=0.136 Sum_probs=30.3
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecC
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEEN 36 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 36 (219)
+++|+.+.|++|++++-+|..+|++|+.+.+.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~ 33 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLF 33 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 89999999999999999999999999998874
No 143
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.42 E-value=0.016 Score=36.93 Aligned_cols=55 Identities=24% Similarity=0.274 Sum_probs=41.0
Q ss_pred ceEEecccCChhhHHHHHHHHhcC--CCcceeecCCCCCchhhhhhCCCCCccceEeeCC
Q 027726 4 NVVLLGFWPSSFAMRVKIALAEKG--IKYESKEENLFDKSPLLLEMNPVDKKIPVLIHDG 61 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~g--i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g 61 (219)
+++||+.+.|+.|..+.-.|+... .+|+...+|..+.+..+.+.+. .+|||..+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l~~~Y~~---~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPELFEKYGY---RIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHHHHHSCT---STSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHhcC---CCCEEEEcC
Confidence 489999999999999999999654 4566777777765555555553 599999776
No 144
>PRK10026 arsenate reductase; Provisional
Probab=96.35 E-value=0.0057 Score=43.32 Aligned_cols=35 Identities=9% Similarity=-0.032 Sum_probs=32.1
Q ss_pred CCcceEEecccCChhhHHHHHHHHhcCCCcceeecC
Q 027726 1 MAENVVLLGFWPSSFAMRVKIALAEKGIKYESKEEN 36 (219)
Q Consensus 1 M~~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 36 (219)
|+ ++++|+.+.|.-|++++-+|..+|++|+++.+-
T Consensus 1 m~-~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~ 35 (141)
T PRK10026 1 MS-NITIYHNPACGTSRNTLEMIRNSGTEPTIIHYL 35 (141)
T ss_pred CC-EEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeee
Confidence 64 799999999999999999999999999988764
No 145
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=96.34 E-value=0.008 Score=42.23 Aligned_cols=33 Identities=9% Similarity=0.145 Sum_probs=30.9
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecCC
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEENL 37 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~ 37 (219)
+++|+.+.|+.|++++-+|..+|++|+++.+.-
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~ 34 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGK 34 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 899999999999999999999999999988753
No 146
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.31 E-value=0.0052 Score=42.21 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=29.8
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecC
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEEN 36 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 36 (219)
+++|+.+.||+|++++-+|..+|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecC
Confidence 58999999999999999999999999988775
No 147
>PRK12559 transcriptional regulator Spx; Provisional
Probab=96.29 E-value=0.0078 Score=42.22 Aligned_cols=33 Identities=27% Similarity=0.204 Sum_probs=30.8
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecCC
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEENL 37 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~ 37 (219)
+++|+.+.|+.|+++.-+|..+|++|+.+.+.-
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~ 34 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeC
Confidence 899999999999999999999999999988753
No 148
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=95.86 E-value=0.013 Score=40.00 Aligned_cols=33 Identities=15% Similarity=0.118 Sum_probs=30.4
Q ss_pred ceEEecccCChhhHHHHHHHHhcCCCcceeecC
Q 027726 4 NVVLLGFWPSSFAMRVKIALAEKGIKYESKEEN 36 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 36 (219)
.++||+.+.|+.|++++-+|..+|++|+++.+.
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~ 33 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLL 33 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehh
Confidence 378999999999999999999999999988764
No 149
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=95.83 E-value=0.012 Score=39.58 Aligned_cols=32 Identities=16% Similarity=0.304 Sum_probs=29.9
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecC
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEEN 36 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 36 (219)
+++|+.+.|+.|++++-+|..+|++|+++.+.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~ 32 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYR 32 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecc
Confidence 58999999999999999999999999998775
No 150
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=95.75 E-value=0.016 Score=39.77 Aligned_cols=33 Identities=21% Similarity=0.167 Sum_probs=30.6
Q ss_pred ceEEecccCChhhHHHHHHHHhcCCCcceeecC
Q 027726 4 NVVLLGFWPSSFAMRVKIALAEKGIKYESKEEN 36 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 36 (219)
++++|+.+.|.-|++++-.|+.+||+|+++.+.
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~ 34 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYL 34 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEee
Confidence 599999999999999999999999999987664
No 151
>PRK10853 putative reductase; Provisional
Probab=95.24 E-value=0.029 Score=38.56 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=29.8
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecC
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEEN 36 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 36 (219)
+++|+.+.|.-|++++-+|+.+|++|+++.+-
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~ 33 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYR 33 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehc
Confidence 89999999999999999999999999987764
No 152
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=95.15 E-value=0.11 Score=32.51 Aligned_cols=56 Identities=21% Similarity=0.204 Sum_probs=40.9
Q ss_pred ceEEecccCChhhHHH----HHHHHhcCCCcceeecCCCCCchhhhhhCCCCCccceEeeCCeeee
Q 027726 4 NVVLLGFWPSSFAMRV----KIALAEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLIHDGKPIC 65 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v----~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~i~ 65 (219)
.+.+|. ++||.|..+ .-++++.|++++.+.++- .++..+.+- ..+|++..||..+.
T Consensus 2 ~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~---~~~a~~~~v--~~vPti~i~G~~~~ 61 (76)
T TIGR00412 2 KIQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD---MNEILEAGV--TATPGVAVDGELVI 61 (76)
T ss_pred EEEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC---HHHHHHcCC--CcCCEEEECCEEEE
Confidence 367777 899999988 668888999888888872 233344444 46999998876553
No 153
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=95.11 E-value=0.19 Score=31.58 Aligned_cols=57 Identities=16% Similarity=0.254 Sum_probs=38.7
Q ss_pred ceEEecccCChhhHHHHHHHHh----cCCCcceeecCCCCCchhhhhhCCCCCccceEeeCCe
Q 027726 4 NVVLLGFWPSSFAMRVKIALAE----KGIKYESKEENLFDKSPLLLEMNPVDKKIPVLIHDGK 62 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~ 62 (219)
++++|+.++||+|..+.-.++. .+..+....+|..+....... ... ..+|++..+|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~-~~v-~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAME-YGI-MAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHH-cCC-ccCCEEEECCE
Confidence 4789999999999988777653 454466666776543333333 333 56999997665
No 154
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=95.05 E-value=0.038 Score=38.45 Aligned_cols=33 Identities=18% Similarity=0.120 Sum_probs=30.5
Q ss_pred ceEEecccCChhhHHHHHHHHhcCCCcceeecC
Q 027726 4 NVVLLGFWPSSFAMRVKIALAEKGIKYESKEEN 36 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 36 (219)
.+++|+.+.|.-|++++-+|..+|++|+++.+.
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~ 34 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDIL 34 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEecc
Confidence 589999999999999999999999999988764
No 155
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=94.44 E-value=0.055 Score=36.80 Aligned_cols=32 Identities=22% Similarity=0.045 Sum_probs=29.4
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecC
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEEN 36 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 36 (219)
+++|+.+.|.-|++++-.|..+|++|+++.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYL 32 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999987763
No 156
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.36 E-value=0.16 Score=33.42 Aligned_cols=65 Identities=15% Similarity=0.146 Sum_probs=45.8
Q ss_pred ccCChhhHHHHHHHHhcC-CCcceeecCCC-CCchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHH
Q 027726 10 FWPSSFAMRVKIALAEKG-IKYESKEENLF-DKSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYID 75 (219)
Q Consensus 10 ~~~s~~~~~v~~~l~~~g-i~~~~~~v~~~-~~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~ 75 (219)
.|.|+||.++--+|...| ++|..+.|=-+ +-.+.+.+.+-. .++|=|-.+|..+-+|..|.+...
T Consensus 27 ~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~W-PT~PQLyi~GEfvGG~DIv~Em~q 93 (105)
T COG0278 27 FPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNW-PTFPQLYVNGEFVGGCDIVREMYQ 93 (105)
T ss_pred CCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCC-CCCceeeECCEEeccHHHHHHHHH
Confidence 566999999999999999 55554443222 223344455555 679999999999999887776543
No 157
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=94.15 E-value=0.068 Score=36.47 Aligned_cols=32 Identities=22% Similarity=0.059 Sum_probs=29.4
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecC
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEEN 36 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 36 (219)
+++|+.+.|.-|++++-+|..+|++|+++.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYL 32 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999987764
No 158
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=94.04 E-value=0.12 Score=29.81 Aligned_cols=54 Identities=24% Similarity=0.245 Sum_probs=35.5
Q ss_pred eEEecccCChhhHHHHHHHH-----hcCCCcceeecCCCCCchhhhhhCCCCCccceEee
Q 027726 5 VVLLGFWPSSFAMRVKIALA-----EKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLIH 59 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~-----~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~ 59 (219)
+.+|+...|++|.+....+. ..++.+..+.++............+. ..+|+++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~~~~ 59 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGV-GGVPTLVV 59 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCC-ccccEEEE
Confidence 46788889999999999999 45555555444433322222234565 78999984
No 159
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=93.78 E-value=0.39 Score=31.38 Aligned_cols=67 Identities=12% Similarity=0.035 Sum_probs=47.9
Q ss_pred eEEecccCCh------hhHHHHHHHHhcCCCcceeecCCCC-CchhhhhhC----CCCCccceEeeCCeeeehhHHHHH
Q 027726 5 VVLLGFWPSS------FAMRVKIALAEKGIKYESKEENLFD-KSPLLLEMN----PVDKKIPVLIHDGKPICESLIIIQ 72 (219)
Q Consensus 5 ~~L~~~~~s~------~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~----p~~~~vP~L~~~g~~i~es~~I~~ 72 (219)
++||....++ .|+.+..+|.-+||+|+++.++..+ ...+..... +. ..+|-+-.+|..+-+...+..
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~-~tvPQIFi~~~~iGg~ddl~~ 79 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGK-PLPPQIFNGDEYCGDYEAFFE 79 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCC-CCCCEEEECCEEeeCHHHHHH
Confidence 5777776654 3578889999999999999998653 223433332 33 578988888888888766555
No 160
>PHA02125 thioredoxin-like protein
Probab=93.77 E-value=0.23 Score=30.91 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=36.1
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecCCCCCchhhhhhCCCCCccceEee
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLIH 59 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~ 59 (219)
+.+|+.++|+.|..+.-.|+ ++.+....++..+ ..++....-. ..+|++..
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~--~~~~~~~~vd~~~-~~~l~~~~~v-~~~PT~~~ 52 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLA--NVEYTYVDVDTDE-GVELTAKHHI-RSLPTLVN 52 (75)
T ss_pred EEEEECCCCHhHHHHHHHHH--HHhheEEeeeCCC-CHHHHHHcCC-ceeCeEEC
Confidence 78999999999998877775 4566666666544 3444444444 57999983
No 161
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=92.98 E-value=0.42 Score=31.67 Aligned_cols=68 Identities=13% Similarity=0.034 Sum_probs=40.9
Q ss_pred eEEecccCChh------hHHHHHHHHhcCCCcceeecCCCCCc-hhhhhhC---------CCCCccceEeeCCeeeehhH
Q 027726 5 VVLLGFWPSSF------AMRVKIALAEKGIKYESKEENLFDKS-PLLLEMN---------PVDKKIPVLIHDGKPICESL 68 (219)
Q Consensus 5 ~~L~~~~~s~~------~~~v~~~l~~~gi~~~~~~v~~~~~~-~~~~~~~---------p~~~~vP~L~~~g~~i~es~ 68 (219)
+++|.+..++. .+++..+|..++|+|+.+.+...+.. .+.++.. +. ...|-+..||..+-+-.
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~-~lpPqiF~~~~Y~Gdye 81 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGK-PLPPQIFNGDEYCGDYE 81 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT---S-EEEETTEEEEEHH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCC-CCCCEEEeCCEEEeeHH
Confidence 88999877664 36899999999999999888876322 2223222 32 33467777887777666
Q ss_pred HHHHH
Q 027726 69 IIIQY 73 (219)
Q Consensus 69 ~I~~y 73 (219)
.+.+.
T Consensus 82 ~f~ea 86 (99)
T PF04908_consen 82 DFEEA 86 (99)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 162
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=92.84 E-value=0.42 Score=30.98 Aligned_cols=58 Identities=16% Similarity=0.002 Sum_probs=37.6
Q ss_pred ceEEecccCChhhHHHHHHHHhc-----CCCcceeecCCCCCchhhhhhCCCCCccceEeeCCeeee
Q 027726 4 NVVLLGFWPSSFAMRVKIALAEK-----GIKYESKEENLFDKSPLLLEMNPVDKKIPVLIHDGKPIC 65 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~i~ 65 (219)
.+.+|..++|++|..+.-++... ++.+..+.+ .+.+....+.+= ..+|+++.||..+.
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~--~~~~e~a~~~~V--~~vPt~vidG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDG--ALFQDEVEERGI--MSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEh--HhCHHHHHHcCC--ccCCEEEECCEEEE
Confidence 47899999999999887766543 455544443 333333334443 46999997776544
No 163
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=92.43 E-value=0.57 Score=31.56 Aligned_cols=68 Identities=16% Similarity=0.249 Sum_probs=45.3
Q ss_pred CChhhHHHHHHHHhcC---CCcceeecCCCCCchhhh-hhCCCCCccceEe-eCCe-------------eeehhHHHHHH
Q 027726 12 PSSFAMRVKIALAEKG---IKYESKEENLFDKSPLLL-EMNPVDKKIPVLI-HDGK-------------PICESLIIIQY 73 (219)
Q Consensus 12 ~s~~~~~v~~~l~~~g---i~~~~~~v~~~~~~~~~~-~~~p~~~~vP~L~-~~g~-------------~i~es~~I~~y 73 (219)
.||.|..+.=+|+..= -..+++.|+..-...... .+......+|+|+ .+|. .|.++..|++|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~ 102 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRY 102 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHH
Confidence 4888998888877432 235666677664333332 2222125699999 3333 68999999999
Q ss_pred HHhhcC
Q 027726 74 IDEVWH 79 (219)
Q Consensus 74 L~~~~~ 79 (219)
|.++++
T Consensus 103 La~r~g 108 (112)
T PF11287_consen 103 LAERHG 108 (112)
T ss_pred HHHHcC
Confidence 999987
No 164
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=90.53 E-value=0.64 Score=34.07 Aligned_cols=39 Identities=21% Similarity=0.310 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhCCC---CcccCCC-CChhHHHHHhhhhhhh
Q 027726 127 EMIGFLKNMEAELGDK---HFFGGES-IGFVDVALVPFTTWFY 165 (219)
Q Consensus 127 ~l~~~l~~le~~L~~~---~~l~G~~-~s~aD~~l~~~l~~~~ 165 (219)
...+.+..|++.|++. +|++|++ +|-+||.+++.+.-+.
T Consensus 112 ~a~~~l~~L~~~L~~~~~~~~~f~~~~psslD~L~~ayL~l~l 154 (168)
T PF11801_consen 112 LAMECLSLLEELLGEWEEARYFFGDSKPSSLDCLAFAYLALLL 154 (168)
T ss_pred HHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHh
Confidence 3567888889999887 9999977 9999999999987655
No 165
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=90.36 E-value=1.2 Score=27.68 Aligned_cols=57 Identities=16% Similarity=0.199 Sum_probs=36.5
Q ss_pred ceEEecccCChhhHHHHH----HHHhcCCCcceeecCCCCCchhhhhhCCCCCccceEeeCCeeeeh
Q 027726 4 NVVLLGFWPSSFAMRVKI----ALAEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLIHDGKPICE 66 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~----~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~i~e 66 (219)
+++++ .+.||+|..+.- ++...|+.++.+.+ ...++..+.+= ..+|++..||..++.
T Consensus 2 ~I~v~-~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~---~~~~~~~~ygv--~~vPalvIng~~~~~ 62 (76)
T PF13192_consen 2 KIKVF-SPGCPYCPELVQLLKEAAEELGIEVEIIDI---EDFEEIEKYGV--MSVPALVINGKVVFV 62 (76)
T ss_dssp EEEEE-CSSCTTHHHHHHHHHHHHHHTTEEEEEEET---TTHHHHHHTT---SSSSEEEETTEEEEE
T ss_pred EEEEe-CCCCCCcHHHHHHHHHHHHhcCCeEEEEEc---cCHHHHHHcCC--CCCCEEEECCEEEEE
Confidence 36774 556999985555 55667877766554 22444444443 579999988876543
No 166
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=86.74 E-value=0.74 Score=31.04 Aligned_cols=29 Identities=28% Similarity=0.220 Sum_probs=22.7
Q ss_pred ecccCChhhHHHHHHHHhcCCCcceeecC
Q 027726 8 LGFWPSSFAMRVKIALAEKGIKYESKEEN 36 (219)
Q Consensus 8 ~~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 36 (219)
|+.+.|.-|++++-+|..+|++|+.+.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~ 29 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYK 29 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhh
Confidence 78899999999999999999999987764
No 167
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.15 E-value=3.4 Score=31.58 Aligned_cols=65 Identities=15% Similarity=0.063 Sum_probs=48.6
Q ss_pred ccCChhhHHHHHHHHhcCCCcceeecCCCC-CchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHH
Q 027726 10 FWPSSFAMRVKIALAEKGIKYESKEENLFD-KSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYID 75 (219)
Q Consensus 10 ~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~ 75 (219)
.|-|++++++--+|...|++|....|-.++ -...+...+-. .++|=|=.+|..+-++..|.+-+.
T Consensus 151 ~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdW-PTfPQlyI~GEFiGGlDIl~~m~~ 216 (227)
T KOG0911|consen 151 EPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDW-PTFPQLYVKGEFIGGLDILKEMHE 216 (227)
T ss_pred cccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCC-CCccceeECCEeccCcHHHHHHhh
Confidence 455999999999999999999887775542 23334456666 679999999998887776665443
No 168
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=81.82 E-value=11 Score=24.16 Aligned_cols=69 Identities=20% Similarity=0.199 Sum_probs=42.2
Q ss_pred eEEecccCChhhHHHHHHH-----HhcCCCcceeecCCCCCchhhhhhCCCCCccceEe--eCCeee------ehhHHHH
Q 027726 5 VVLLGFWPSSFAMRVKIAL-----AEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLI--HDGKPI------CESLIII 71 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l-----~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~i------~es~~I~ 71 (219)
+..|+.++|+.|+...=.+ .+.+ ++....+|.... ..+.+.--. ..+|++. .+|..+ .+...|.
T Consensus 21 vv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~-~~l~~~~~v-~~~Pt~~~~~~g~~~~~~~g~~~~~~l~ 97 (103)
T PF00085_consen 21 VVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDEN-KELCKKYGV-KSVPTIIFFKNGKEVKRYNGPRNAESLI 97 (103)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTS-HHHHHHTTC-SSSSEEEEEETTEEEEEEESSSSHHHHH
T ss_pred EEEEeCCCCCccccccceeccccccccc-ccccchhhhhcc-chhhhccCC-CCCCEEEEEECCcEEEEEECCCCHHHHH
Confidence 5677888899999877443 2333 555666666543 444433334 5799999 466533 2445677
Q ss_pred HHHHh
Q 027726 72 QYIDE 76 (219)
Q Consensus 72 ~yL~~ 76 (219)
++|.+
T Consensus 98 ~~i~~ 102 (103)
T PF00085_consen 98 EFIEK 102 (103)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 77654
No 169
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=81.13 E-value=2.8 Score=28.75 Aligned_cols=50 Identities=20% Similarity=0.333 Sum_probs=22.3
Q ss_pred hHHHHHHHHhcCCCcceeecCCCCCchhhhhhCCCCCccceEee--CCeeeehhHHHHHHHHhhcC
Q 027726 16 AMRVKIALAEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLIH--DGKPICESLIIIQYIDEVWH 79 (219)
Q Consensus 16 ~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~--~g~~i~es~~I~~yL~~~~~ 79 (219)
..|+-++++...-.++. ..|.. ..-|-|.+ +|..++|++||++|+..-|.
T Consensus 12 NLKlalA~~~~~~~lk~-------------~v~ed-~~~~~L~~~~~gF~L~e~NAIvrYl~nDF~ 63 (122)
T PF09635_consen 12 NLKLALALEYAQKDLKL-------------EVNED-ESGPLLKDKKSGFELFEPNAIVRYLANDFE 63 (122)
T ss_dssp HHHHHHHHHH--STT---------------EE-SS---S--EEE-S--S----HHHHHHHHTT--T
T ss_pred HHHHHHHHHHhCCCCee-------------eeCCc-cccceeeecCCceEEecccHHHHHHHhhcC
Confidence 45666666665433322 22333 44588864 67899999999999988776
No 170
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=77.24 E-value=12 Score=25.70 Aligned_cols=32 Identities=6% Similarity=0.088 Sum_probs=21.0
Q ss_pred eEEecccCChhhHHHHHH----HHhcCCCcceeecC
Q 027726 5 VVLLGFWPSSFAMRVKIA----LAEKGIKYESKEEN 36 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~----l~~~gi~~~~~~v~ 36 (219)
+.-|+.++||+|+.+.=. ....++++..+.++
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd 62 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSE 62 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECC
Confidence 566888899999985444 34445555555554
No 171
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=76.96 E-value=7.5 Score=27.41 Aligned_cols=76 Identities=11% Similarity=-0.012 Sum_probs=48.5
Q ss_pred cceEEecccCChhhHHHHHHHHhcCCCcceeecCCCCCchhhhhhCCCCCccceEeeCCeeeeh---hHHHHHHHHhhc
Q 027726 3 ENVVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLIHDGKPICE---SLIIIQYIDEVW 78 (219)
Q Consensus 3 ~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~i~e---s~~I~~yL~~~~ 78 (219)
-++.+|.+|.|+-|....-.|+.+|..++.+..+....-..-..+-+.....=+.+.+|..+=+ ..+|.+.|++..
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll~~~p 104 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLLAEKP 104 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcHHHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHHhCCC
Confidence 3689999999999999999999999988776655332111101111101234445556655433 478999998876
No 172
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=72.68 E-value=19 Score=22.06 Aligned_cols=54 Identities=24% Similarity=0.261 Sum_probs=33.0
Q ss_pred eEEecccCChhhHHHHHHHHh-----cCCCcceeecCCCCCchhhhhhCCCCCccceEe--eCCe
Q 027726 5 VVLLGFWPSSFAMRVKIALAE-----KGIKYESKEENLFDKSPLLLEMNPVDKKIPVLI--HDGK 62 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~ 62 (219)
+..|+.+.|+.|+...-.+.. .++.+-. ++... ...+...-.. ..+|++. .+|.
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~--i~~~~-~~~~~~~~~v-~~~P~~~~~~~g~ 74 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVK--VDVDE-NPELAEEYGV-RSIPTFLFFKNGK 74 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEEE--EECCC-ChhHHHhcCc-ccccEEEEEECCE
Confidence 667888889999988777765 5554443 33333 2333333233 4689887 3555
No 173
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=71.26 E-value=14 Score=24.15 Aligned_cols=52 Identities=13% Similarity=-0.104 Sum_probs=30.5
Q ss_pred eEEecccCChhhHHHHHHH--------HhcCCCcceeecCCCCC---chhhhhhCCCCCccceEe
Q 027726 5 VVLLGFWPSSFAMRVKIAL--------AEKGIKYESKEENLFDK---SPLLLEMNPVDKKIPVLI 58 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l--------~~~gi~~~~~~v~~~~~---~~~~~~~~p~~~~vP~L~ 58 (219)
+..|+.++|++|++..-.+ ...+ .+....++.... ..++...... ..+|++.
T Consensus 15 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i-~~~Pti~ 77 (104)
T cd02953 15 FVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGV-FGPPTYL 77 (104)
T ss_pred EEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCC-CCCCEEE
Confidence 5678888899999875332 2232 455555665432 2344433333 5699888
No 174
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=70.97 E-value=3.7 Score=31.48 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhCCCCcccCCCCChhHHHHHhhhhhhhhhhhhcCCcccccCchHHHHHHHHhcccch
Q 027726 129 IGFLKNMEAELGDKHFFGGESIGFVDVALVPFTTWFYTYETFGNLSVEAECPKLIAWAKRCSQKESV 195 (219)
Q Consensus 129 ~~~l~~le~~L~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~ 195 (219)
.+.+..++..|.+++|.-|.+++-+|+.++..+.- .+....+++..+|+..+...-.+
T Consensus 10 ~~glk~l~~sLA~ks~~~g~~~s~edv~vf~al~~---------ep~s~~~v~~~~w~~~l~a~~~~ 67 (231)
T KOG1668|consen 10 PAGLKKLNKSLAEKSYIEGYQLSKEDVVVFAALGV---------EPQSARLVNAERWYSKLEALLRL 67 (231)
T ss_pred hhhhhhhhHhhhcccCCCCCCcccccceeehhccc---------CcchhhhhHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999877521 12235667778888777765444
No 175
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=70.14 E-value=23 Score=22.82 Aligned_cols=58 Identities=12% Similarity=0.001 Sum_probs=33.8
Q ss_pred eEEecccCChhhHHHHHHHHh----cCCCcceeecCCCCCchhhhhhCCCCCccceEe--eCCeee
Q 027726 5 VVLLGFWPSSFAMRVKIALAE----KGIKYESKEENLFDKSPLLLEMNPVDKKIPVLI--HDGKPI 64 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~i 64 (219)
+.+|+.++|+.|....-.+.. .+-.+....+|..+.+.-.....- ..+|++. .+|..+
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v--~~vPt~~i~~~g~~v 80 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGI--MGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCC--eeccEEEEEECCeEE
Confidence 567788899999987766643 221344555665543332223333 4689888 466543
No 176
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=70.02 E-value=25 Score=22.32 Aligned_cols=57 Identities=7% Similarity=-0.037 Sum_probs=35.2
Q ss_pred eEEecccCChhhHHHHHHHHh---c-CCCcceeecCCCCCchhhhhhCCCCCccceEe--eCCee
Q 027726 5 VVLLGFWPSSFAMRVKIALAE---K-GIKYESKEENLFDKSPLLLEMNPVDKKIPVLI--HDGKP 63 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~---~-gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~ 63 (219)
+..|+.++|+.|++..-.+.. . +..+....++..+...-..+.+. ..+|++. .+|..
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i--~~~Pt~~~~~~g~~ 80 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEI--TAVPTFVFFRNGTI 80 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCC--ccccEEEEEECCEE
Confidence 456778889999987665543 1 33455566665543333345555 4599988 46654
No 177
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=69.60 E-value=30 Score=23.02 Aligned_cols=57 Identities=7% Similarity=-0.003 Sum_probs=31.6
Q ss_pred eEEecccCChhhHHHHHHH-----HhcCCCcceeecCCCCCchhhhhhCCCCCccceEe--eCCee
Q 027726 5 VVLLGFWPSSFAMRVKIAL-----AEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLI--HDGKP 63 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l-----~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~ 63 (219)
+..|+.++|+.|+...-.+ .+.|..+....++... .+.+.....- ..+|++. .+|..
T Consensus 28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~-~~~l~~~~~V-~~~Pt~~i~~~g~~ 91 (111)
T cd02963 28 LIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH-ERRLARKLGA-HSVPAIVGIINGQV 91 (111)
T ss_pred EEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc-cHHHHHHcCC-ccCCEEEEEECCEE
Confidence 5567888899997554332 2333334445555543 2333333333 5799988 46643
No 178
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=69.44 E-value=37 Score=26.60 Aligned_cols=66 Identities=17% Similarity=0.157 Sum_probs=43.8
Q ss_pred hHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHhcccccchhhhccCCchHHHHHHHHHHHHHHHHHHHh
Q 027726 67 SLIIIQYIDEVWHHKSPLMPSDSYLRSQARFWADYVDKNIYGIGKRIWSGKGEDQEAAKKEMIGFLKNMEAEL 139 (219)
Q Consensus 67 s~~I~~yL~~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L 139 (219)
-..|-..+.+...... -|+|+...+.|...+...-...+.....++ ..+.+++++...+..||.+|
T Consensus 6 ~qLI~~lf~RL~~ae~--~prD~eAe~lI~~~~~~qP~A~Y~laQ~vl-----vQE~AL~~a~~ri~eLe~ql 71 (247)
T PF09849_consen 6 RQLIDDLFSRLKQAEA--QPRDPEAEALIAQALARQPDAPYYLAQTVL-----VQEQALKQAQARIQELEAQL 71 (247)
T ss_pred HHHHHHHHHHHHhccC--CCCCHHHHHHHHHHHHhCCchHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 3455555555544222 289999998887777665555444444433 35678888888889999997
No 179
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=68.47 E-value=13 Score=32.76 Aligned_cols=57 Identities=16% Similarity=0.226 Sum_probs=37.7
Q ss_pred ceEEecccCChhhHHHHH----HHHhc-CCCcceeecCCCCCchhhh-hhCCCCCccceEeeCCeeee
Q 027726 4 NVVLLGFWPSSFAMRVKI----ALAEK-GIKYESKEENLFDKSPLLL-EMNPVDKKIPVLIHDGKPIC 65 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~----~l~~~-gi~~~~~~v~~~~~~~~~~-~~~p~~~~vP~L~~~g~~i~ 65 (219)
.+++|..+.||||-.+.- ++.+. +|..+.+.+... +++. +.+= ..+|.++.||.++.
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~---~~~~~~~~v--~~vP~~~i~~~~~~ 541 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHF---PDLKDEYGI--MSVPAIVVDDQQVY 541 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECccc---HHHHHhCCc--eecCEEEECCEEEE
Confidence 478999999999976554 44555 677766655433 3444 4443 56999998776543
No 180
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=64.43 E-value=29 Score=26.32 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=33.1
Q ss_pred ceEEecccCChhhHHHHHHHHhcCC---CcceeecCCCCCchhhhhhCCCCCccceEee
Q 027726 4 NVVLLGFWPSSFAMRVKIALAEKGI---KYESKEENLFDKSPLLLEMNPVDKKIPVLIH 59 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~ 59 (219)
.+++|+.++||+|..+.-++...-- .+....+|.... ++.....-- ..+|++..
T Consensus 136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~-~~~~~~~~V-~~vPtl~i 192 (215)
T TIGR02187 136 RIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANEN-PDLAEKYGV-MSVPKIVI 192 (215)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCC-HHHHHHhCC-ccCCEEEE
Confidence 3667899999999988877664321 233344555543 334333333 56999994
No 181
>PRK09381 trxA thioredoxin; Provisional
Probab=64.18 E-value=38 Score=22.18 Aligned_cols=58 Identities=16% Similarity=0.033 Sum_probs=33.5
Q ss_pred eEEecccCChhhHHHHHHHH----hcCCCcceeecCCCCCchhhhhhCCCCCccceEe--eCCeee
Q 027726 5 VVLLGFWPSSFAMRVKIALA----EKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLI--HDGKPI 64 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~----~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~i 64 (219)
+..|+.++||.|+...-.++ ..+-.+....++......-..+.+. ..+|++. .+|..+
T Consensus 25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v--~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGI--RGIPTLLLFKNGEVA 88 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCC--CcCCEEEEEeCCeEE
Confidence 45677778999987653332 2222355556665543333334554 5799988 466543
No 182
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=63.76 E-value=22 Score=23.86 Aligned_cols=52 Identities=15% Similarity=0.094 Sum_probs=30.8
Q ss_pred eEEe-cccCChhhHHHHHHHHhcCCC---cceeecCCCCCchhhhhhCCCCCccceEe
Q 027726 5 VVLL-GFWPSSFAMRVKIALAEKGIK---YESKEENLFDKSPLLLEMNPVDKKIPVLI 58 (219)
Q Consensus 5 ~~L~-~~~~s~~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~~vP~L~ 58 (219)
++++ +.++||+|+.+.-++....-. ++...++... .+++...-.. ..+|++.
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~-~~~l~~~~~v-~~vPt~~ 80 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDE-DKEKAEKYGV-ERVPTTI 80 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCc-CHHHHHHcCC-CcCCEEE
Confidence 4444 667899999877766533321 2344455443 4455544344 6799999
No 183
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=61.56 E-value=46 Score=22.31 Aligned_cols=57 Identities=19% Similarity=0.129 Sum_probs=35.4
Q ss_pred eEEecccCChhhHHHHHHHHh-----cCCCcceeecCCCCCchhhhhhCCCCCccceEe--eCCeeee
Q 027726 5 VVLLGFWPSSFAMRVKIALAE-----KGIKYESKEENLFDKSPLLLEMNPVDKKIPVLI--HDGKPIC 65 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~i~ 65 (219)
+..|+.+.|+-|+.+.-.+.. .++ ....+|... .+++.+...- ..+|++. .+|..+.
T Consensus 26 vV~f~a~~c~~C~~~~p~l~~la~~~~~i--~f~~Vd~~~-~~~l~~~~~v-~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 26 VCHFYHPEFFRCKIMDKHLEILAKKHLET--KFIKVNAEK-APFLVEKLNI-KVLPTVILFKNGKTVD 89 (113)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCCC--EEEEEEccc-CHHHHHHCCC-ccCCEEEEEECCEEEE
Confidence 456777889999977765543 333 455566554 3344443344 6799999 4777654
No 184
>PHA03075 glutaredoxin-like protein; Provisional
Probab=59.92 E-value=17 Score=24.76 Aligned_cols=70 Identities=17% Similarity=0.159 Sum_probs=48.3
Q ss_pred CCcceEEecccCChhhHHHHHHHHhcCCCcceeecCCCCCchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHHhhc
Q 027726 1 MAENVVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYIDEVW 78 (219)
Q Consensus 1 M~~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~~~~ 78 (219)
|-..+.|+|-|.|+-|.-+.-+|....=+|+...|+... |.. -. |++=+|-.|+.. .=-+.+.+|+...+
T Consensus 1 mK~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlS----fFs--K~-g~v~~lg~d~~y-~lInn~~~~lgne~ 70 (123)
T PHA03075 1 MKKTLILFGKPLCSVCESISEALKELEDEYDILRVNILS----FFS--KD-GQVKVLGMDKGY-TLINNFFKHLGNEY 70 (123)
T ss_pred CCceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEeee----eec--cC-CceEEEecccce-ehHHHHHHhhcccE
Confidence 556789999999999999999998888889998887542 111 22 667777654321 11245667766544
No 185
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=59.26 E-value=33 Score=23.23 Aligned_cols=16 Identities=13% Similarity=0.243 Sum_probs=12.9
Q ss_pred eEEecccCChhhHHHH
Q 027726 5 VVLLGFWPSSFAMRVK 20 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~ 20 (219)
+..|+.++|++|++..
T Consensus 18 lv~f~a~wC~~C~~~~ 33 (125)
T cd02951 18 LLLFSQPGCPYCDKLK 33 (125)
T ss_pred EEEEeCCCCHHHHHHH
Confidence 5677888899999865
No 186
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=58.25 E-value=13 Score=32.53 Aligned_cols=72 Identities=11% Similarity=-0.027 Sum_probs=42.6
Q ss_pred ceEEecccCChhhHHHHHHHHhcCC---CcceeecCCCCCchhhhhhCCCCCccceEeeCCeeeehh----HHHHHHHHh
Q 027726 4 NVVLLGFWPSSFAMRVKIALAEKGI---KYESKEENLFDKSPLLLEMNPVDKKIPVLIHDGKPICES----LIIIQYIDE 76 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~i~es----~~I~~yL~~ 76 (219)
.+++|..+.||||-.+..++...-+ .++...++-.+.++...+.+= ..||.+..||..+.+. ..+++.+.+
T Consensus 119 ~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v--~~VP~~~i~~~~~~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 119 HFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNI--MAVPTVFLNGEEFGQGRMTLEEILAKLDT 196 (517)
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCC--cccCEEEECCcEEEecCCCHHHHHHHHhc
Confidence 4789999999999887666544333 223333333333333333433 5799999877655542 345566654
Q ss_pred h
Q 027726 77 V 77 (219)
Q Consensus 77 ~ 77 (219)
.
T Consensus 197 ~ 197 (517)
T PRK15317 197 G 197 (517)
T ss_pred c
Confidence 3
No 187
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=58.04 E-value=36 Score=22.67 Aligned_cols=69 Identities=9% Similarity=0.057 Sum_probs=40.6
Q ss_pred EecccCChhhHHHHHHHHhcCCCcceeecCCC-CCchh---hhhhC---CCCCccceEeeCCe-eeehhHHHHHHHHhh
Q 027726 7 LLGFWPSSFAMRVKIALAEKGIKYESKEENLF-DKSPL---LLEMN---PVDKKIPVLIHDGK-PICESLIIIQYIDEV 77 (219)
Q Consensus 7 L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~---~~~~~---p~~~~vP~L~~~g~-~i~es~~I~~yL~~~ 77 (219)
|++...||+|....-.+...+..=....++.. +...+ ...++ .. ..+-+ ..+|. ...++.++..-+...
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~-~~~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDAD-SRLHL-IDDGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHc-CeeEE-ecCCCEEEEcHHHHHHHHHHc
Confidence 46777899999998888887763333444432 11111 11222 22 23333 55665 899999988875543
No 188
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=56.41 E-value=12 Score=32.55 Aligned_cols=72 Identities=8% Similarity=0.030 Sum_probs=42.6
Q ss_pred ceEEecccCChhhHHHHHHHHhcCCC---cceeecCCCCCchhhhhhCCCCCccceEeeCCeeeehh----HHHHHHHHh
Q 027726 4 NVVLLGFWPSSFAMRVKIALAEKGIK---YESKEENLFDKSPLLLEMNPVDKKIPVLIHDGKPICES----LIIIQYIDE 76 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~i~es----~~I~~yL~~ 76 (219)
.+++|..+.||||-.+..++...-+. ++...++-...++...+.+= ..||.+..||..+.+. ..+++.+.+
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v--~~VP~~~i~~~~~~~g~~~~~~~~~~l~~ 197 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGI--QGVPAVFLNGEEFHNGRMDLAELLEKLEE 197 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCC--cccCEEEECCcEEEecCCCHHHHHHHHhh
Confidence 47899999999998877766544432 22223443333333334443 5799999777655542 334455543
Q ss_pred h
Q 027726 77 V 77 (219)
Q Consensus 77 ~ 77 (219)
.
T Consensus 198 ~ 198 (515)
T TIGR03140 198 T 198 (515)
T ss_pred c
Confidence 3
No 189
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=52.77 E-value=56 Score=20.56 Aligned_cols=56 Identities=18% Similarity=0.091 Sum_probs=31.1
Q ss_pred eEEecccCChhhHHHHHHHH----hcCCCcceeecCCCCCchhhhhhCCCCCccceEe--eCCe
Q 027726 5 VVLLGFWPSSFAMRVKIALA----EKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLI--HDGK 62 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~----~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~ 62 (219)
+..|+.++|+.|+...-.+. ..+-.+....++.........+.+- ..+|++. .+|.
T Consensus 18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v--~~~P~~~~~~~g~ 79 (101)
T TIGR01068 18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGI--RSIPTLLLFKNGK 79 (101)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCC--CcCCEEEEEeCCc
Confidence 45667777999987654443 2222345555555443332334444 4699888 3554
No 190
>PRK10996 thioredoxin 2; Provisional
Probab=52.17 E-value=79 Score=22.06 Aligned_cols=58 Identities=14% Similarity=0.076 Sum_probs=33.8
Q ss_pred eEEecccCChhhHHHHHHHH----hcCCCcceeecCCCCCchhhhhhCCCCCccceEe--eCCeee
Q 027726 5 VVLLGFWPSSFAMRVKIALA----EKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLI--HDGKPI 64 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~----~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~i 64 (219)
+..|+.++|+.|+...-.+. ..+-.+....++..+...-..+.+- ..+|++. .+|..+
T Consensus 56 vv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V--~~~Ptlii~~~G~~v 119 (139)
T PRK10996 56 VIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRI--RSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCC--CccCEEEEEECCEEE
Confidence 55777888999987543332 2233355555665543333334444 5699988 466543
No 191
>PTZ00051 thioredoxin; Provisional
Probab=50.20 E-value=64 Score=20.45 Aligned_cols=57 Identities=12% Similarity=0.030 Sum_probs=31.5
Q ss_pred eEEecccCChhhHHHHHHHHh---cCCCcceeecCCCCCchhhhhhCCCCCccceEe--eCCee
Q 027726 5 VVLLGFWPSSFAMRVKIALAE---KGIKYESKEENLFDKSPLLLEMNPVDKKIPVLI--HDGKP 63 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~---~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~ 63 (219)
+..|+.++|+.|+...-.+.. ....+....++..+ ...+.+.-.. ..+|++. .+|..
T Consensus 22 li~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~-~~~~~~~~~v-~~~Pt~~~~~~g~~ 83 (98)
T PTZ00051 22 IVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDE-LSEVAEKENI-TSMPTFKVFKNGSV 83 (98)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcc-hHHHHHHCCC-ceeeEEEEEeCCeE
Confidence 457788889999877554443 11123444455443 2334333233 5699888 35544
No 192
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=49.77 E-value=68 Score=20.61 Aligned_cols=55 Identities=18% Similarity=0.064 Sum_probs=31.2
Q ss_pred eEEecccCChhhHHHHHHHH-----hcCCCcceeecCCCCCchhhhhhCCCCCccceEe--eCCe
Q 027726 5 VVLLGFWPSSFAMRVKIALA-----EKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLI--HDGK 62 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~-----~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~ 62 (219)
+..|+.++|+.|+...-.+. +.| .+....++..+. +.+.+..-- ..+|++. .+|.
T Consensus 22 ~v~f~a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~~-~~~~~~~~v-~~~Pt~~~~~~g~ 83 (101)
T cd03003 22 FVNFYSPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGDD-RMLCRSQGV-NSYPSLYVFPSGM 83 (101)
T ss_pred EEEEECCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCcc-HHHHHHcCC-CccCEEEEEcCCC
Confidence 55678888999986554442 223 244555665543 334332233 5689987 3554
No 193
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=48.11 E-value=97 Score=21.91 Aligned_cols=76 Identities=16% Similarity=0.071 Sum_probs=45.2
Q ss_pred cceEEecccCChhhHHHHHHHHhcCCCcceeecCCC-CCchhhhhhCCCC-Cc--cceEeeCCeeeehhHHHHHHHHhhc
Q 027726 3 ENVVLLGFWPSSFAMRVKIALAEKGIKYESKEENLF-DKSPLLLEMNPVD-KK--IPVLIHDGKPICESLIIIQYIDEVW 78 (219)
Q Consensus 3 ~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~-~~--vP~L~~~g~~i~es~~I~~yL~~~~ 78 (219)
+++++++..-|++|...--+|..++-.=..+..+.. +.........+.. .. .=+++.+|..+.+|.|+++-+-..-
T Consensus 8 p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~~i~~~L~ 87 (137)
T COG3011 8 PDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAIRILRLLP 87 (137)
T ss_pred CCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceEeccHHHHHHHHHCC
Confidence 567788888899998766666666555333444333 2233333332220 11 1122358899999999998776653
No 194
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=46.23 E-value=32 Score=25.15 Aligned_cols=36 Identities=11% Similarity=0.036 Sum_probs=26.0
Q ss_pred ceEEecccCChhhHH----HHHHHHhc-CCCcceeecCCCC
Q 027726 4 NVVLLGFWPSSFAMR----VKIALAEK-GIKYESKEENLFD 39 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~----v~~~l~~~-gi~~~~~~v~~~~ 39 (219)
++++|....||||.. ++-+++.. |+.++..++.+..
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~ 41 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRP 41 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSST
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccccc
Confidence 478999999999964 44445555 8888777776543
No 195
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=45.96 E-value=92 Score=21.03 Aligned_cols=59 Identities=17% Similarity=0.113 Sum_probs=30.6
Q ss_pred eEEecccCChhhHHHHHHHHh------cCCCcceeecCCCCCchhhhhhCCCCCccceEe--e-CCeee
Q 027726 5 VVLLGFWPSSFAMRVKIALAE------KGIKYESKEENLFDKSPLLLEMNPVDKKIPVLI--H-DGKPI 64 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~------~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~-~g~~i 64 (219)
+.-|+.++|+.|+...-.+.. .+..|..+.++-.. .+.-...+..++.+|++. + +|..+
T Consensus 23 lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~-~~~~~~~~~~g~~vPt~~f~~~~Gk~~ 90 (117)
T cd02959 23 MLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDE-EPKDEEFSPDGGYIPRILFLDPSGDVH 90 (117)
T ss_pred EEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCC-CchhhhcccCCCccceEEEECCCCCCc
Confidence 455677889999877554443 22334444444322 111123444312499988 3 55543
No 196
>PHA02278 thioredoxin-like protein
Probab=45.66 E-value=87 Score=20.68 Aligned_cols=58 Identities=21% Similarity=0.153 Sum_probs=30.9
Q ss_pred eEEecccCChhhHHHHHHHHhc----CCCcceeecCCCCC---chhhh-hhCCCCCccceEe--eCCeee
Q 027726 5 VVLLGFWPSSFAMRVKIALAEK----GIKYESKEENLFDK---SPLLL-EMNPVDKKIPVLI--HDGKPI 64 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~----gi~~~~~~v~~~~~---~~~~~-~~~p~~~~vP~L~--~~g~~i 64 (219)
+.-|+.++|+.|+...=.+... +.......++.... .+++. +.+- ..+|++. .+|..+
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I--~~iPT~i~fk~G~~v 85 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDI--MSTPVLIGYKDGQLV 85 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCC--ccccEEEEEECCEEE
Confidence 4456677799998665433221 22223344444421 23444 3444 5699999 477654
No 197
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=44.72 E-value=35 Score=27.09 Aligned_cols=58 Identities=14% Similarity=0.175 Sum_probs=43.1
Q ss_pred hhHHHHHHHHhcCCCcceeecCCCC-Cchhhhhh----CCCCCccceEeeCCeeeehhHHHHHH
Q 027726 15 FAMRVKIALAEKGIKYESKEENLFD-KSPLLLEM----NPVDKKIPVLIHDGKPICESLIIIQY 73 (219)
Q Consensus 15 ~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~----~p~~~~vP~L~~~g~~i~es~~I~~y 73 (219)
.|..||.+|+-.++.|+++.|++.. ...++..+ .-. ..+|.+-.+|..|-+...|.+-
T Consensus 149 ~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~-~~LPrVFV~GryIGgaeeV~~L 211 (281)
T KOG2824|consen 149 DCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKA-VSLPRVFVKGRYIGGAEEVVRL 211 (281)
T ss_pred HHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhccccc-CccCeEEEccEEeccHHHhhhh
Confidence 4789999999999999999999883 23343322 112 5799666899988888877764
No 198
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=44.70 E-value=1e+02 Score=22.09 Aligned_cols=60 Identities=13% Similarity=0.081 Sum_probs=33.8
Q ss_pred eEEecccCChhhHHHHHHHH-----hcCCCcceeecCCCCCchhhh-hhCCCC----CccceEe--eCCeeee
Q 027726 5 VVLLGFWPSSFAMRVKIALA-----EKGIKYESKEENLFDKSPLLL-EMNPVD----KKIPVLI--HDGKPIC 65 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~-----~~gi~~~~~~v~~~~~~~~~~-~~~p~~----~~vP~L~--~~g~~i~ 65 (219)
+..|+.++||.|+...-.++ +.+-.++...||..+.+ +.. +.+-.. .++|++. .+|..+.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~-~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFP-NVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCH-HHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 56778888999986654332 22233556666665432 332 223210 2389988 4776554
No 199
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=42.04 E-value=99 Score=20.29 Aligned_cols=54 Identities=15% Similarity=0.110 Sum_probs=30.8
Q ss_pred ceEEecccCChhhHHHHHHHH-----hcCCCcceeecCCCCCchhhh-hhCCCCCccceEe
Q 027726 4 NVVLLGFWPSSFAMRVKIALA-----EKGIKYESKEENLFDKSPLLL-EMNPVDKKIPVLI 58 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~-----~~gi~~~~~~v~~~~~~~~~~-~~~p~~~~vP~L~ 58 (219)
-+..|+.++||.|+...-.+. +.|..+....++.......+. +.... ..+|++.
T Consensus 24 vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v-~~~Pti~ 83 (109)
T cd02993 24 TLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQL-KSFPTIL 83 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCC-CcCCEEE
Confidence 366788889999986654332 333345555555543223332 22333 5689887
No 200
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=41.77 E-value=92 Score=23.55 Aligned_cols=52 Identities=17% Similarity=0.153 Sum_probs=30.4
Q ss_pred eEEecc---cCChhhHHHHHHHHhc-----CCCcceeecCCCCCchhhhhhCCCCCccceEe
Q 027726 5 VVLLGF---WPSSFAMRVKIALAEK-----GIKYESKEENLFDKSPLLLEMNPVDKKIPVLI 58 (219)
Q Consensus 5 ~~L~~~---~~s~~~~~v~~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~ 58 (219)
+.+|.. ++||.|..+.=.+... ++.+..+.++..+ .+++....-- ..+|++.
T Consensus 23 i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~-~~~l~~~~~V-~~~Pt~~ 82 (215)
T TIGR02187 23 IVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPE-DKEEAEKYGV-ERVPTTI 82 (215)
T ss_pred EEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcc-cHHHHHHcCC-CccCEEE
Confidence 567777 7899998776666443 2333344444333 3444433333 5699998
No 201
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=39.48 E-value=98 Score=19.49 Aligned_cols=57 Identities=18% Similarity=0.105 Sum_probs=32.3
Q ss_pred eEEecccCChhhHHHHHHHHhc----CCCcceeecCCCCCchhhhhhCCCCCccceEe--eCCee
Q 027726 5 VVLLGFWPSSFAMRVKIALAEK----GIKYESKEENLFDKSPLLLEMNPVDKKIPVLI--HDGKP 63 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~ 63 (219)
+..|+.++|+.|+...-.+... +-.+....++... ...+.+.-.. ..+|+++ .+|..
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-~~~l~~~~~i-~~~Pt~~~~~~g~~ 78 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA-QPQIAQQFGV-QALPTVYLFAAGQP 78 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC-CHHHHHHcCC-CCCCEEEEEeCCEE
Confidence 4566777799998765554422 2134445555544 3444433233 5699999 46654
No 202
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=39.44 E-value=40 Score=23.97 Aligned_cols=48 Identities=6% Similarity=0.119 Sum_probs=33.3
Q ss_pred HHHHhcccccchhhhccCCchHHHHHHHHHHHHHHHHHHHhCCCCccc
Q 027726 99 ADYVDKNIYGIGKRIWSGKGEDQEAAKKEMIGFLKNMEAELGDKHFFG 146 (219)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~ 146 (219)
-.++++.+.|.+.-.+..+........+.+......+|.++.|+-++.
T Consensus 8 k~YiDTaliPL~~i~~~~~~k~~a~~~E~~~~l~~~lErqfKGRv~l~ 55 (142)
T PF10673_consen 8 KEYIDTALIPLIPIDFGEDMKEAASQGEFLRLLADELERQFKGRVLLF 55 (142)
T ss_pred hcccceeeeeccccCccccHHHHHHHHHHHHHHHHHHHHhcCceEEec
Confidence 345666666666655555555566777788888889999998875444
No 203
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=38.74 E-value=83 Score=20.86 Aligned_cols=57 Identities=18% Similarity=0.079 Sum_probs=32.6
Q ss_pred eEEecccCChhhHHHHHHHH-----hcCCCcceeecCCCCCchhhhhhCCCCCccceEe--eCCeeeeh
Q 027726 5 VVLLGFWPSSFAMRVKIALA-----EKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLI--HDGKPICE 66 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~-----~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~i~e 66 (219)
+..|+.++|+.|+.+.-.++ +.++ ....++..+. .+.+..-. ..+|++. .+|..+..
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v--~f~~vd~~~~--~l~~~~~i-~~~Pt~~~f~~G~~v~~ 91 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPET--KFVKINAEKA--FLVNYLDI-KVLPTLLVYKNGELIDN 91 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCc--EEEEEEchhh--HHHHhcCC-CcCCEEEEEECCEEEEE
Confidence 44677888999986655443 2333 3344554432 44433233 5799999 47765543
No 204
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=38.56 E-value=32 Score=23.15 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=21.4
Q ss_pred cceEe-eCCeeeehhHHHHHHHHhhcC
Q 027726 54 IPVLI-HDGKPICESLIIIQYIDEVWH 79 (219)
Q Consensus 54 vP~L~-~~g~~i~es~~I~~yL~~~~~ 79 (219)
+|.+. .+|.++++|..|+++..+.+.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 45555 699999999999999988765
No 205
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=38.01 E-value=1.1e+02 Score=19.64 Aligned_cols=52 Identities=10% Similarity=-0.102 Sum_probs=29.1
Q ss_pred eEEecccCChhhHHHHHHHH----hcCCCcceeecCCCCCchhhhhhCCCCCccceEe
Q 027726 5 VVLLGFWPSSFAMRVKIALA----EKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLI 58 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~----~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~ 58 (219)
+..|+.++|+.|+...-.+. ..+-.+....+|... ..++.+...- ..+|++.
T Consensus 23 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~i-~~~Pt~~ 78 (104)
T cd03004 23 LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK-YESLCQQANI-RAYPTIR 78 (104)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc-hHHHHHHcCC-CcccEEE
Confidence 55778888999986544332 222124445555544 3344332233 5689988
No 206
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=37.14 E-value=1.2e+02 Score=19.68 Aligned_cols=56 Identities=16% Similarity=-0.032 Sum_probs=29.7
Q ss_pred eEEecccCChhhHHHHHHHH----hcC-CCcceeecCCCCCchhhhhhCCCCCccceEe--eCCee
Q 027726 5 VVLLGFWPSSFAMRVKIALA----EKG-IKYESKEENLFDKSPLLLEMNPVDKKIPVLI--HDGKP 63 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~----~~g-i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~ 63 (219)
+..|+.++|+.|+...-.+. ..+ -.+....++..+ .......+- ..+|++. .+|..
T Consensus 21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~-~~~~~~~~v--~~~Pt~~~~~~g~~ 83 (102)
T cd02948 21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADT-IDTLKRYRG--KCEPTFLFYKNGEL 83 (102)
T ss_pred EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCC-HHHHHHcCC--CcCcEEEEEECCEE
Confidence 45677888999986654433 222 123344444442 222233333 5689887 46654
No 207
>PF13728 TraF: F plasmid transfer operon protein
Probab=36.48 E-value=1.1e+02 Score=23.36 Aligned_cols=52 Identities=8% Similarity=-0.012 Sum_probs=33.6
Q ss_pred eEEecccCChhhH----HHHHHHHhcCCCcceeecCCC---------CCchhhhhhCCCCCccceEe
Q 027726 5 VVLLGFWPSSFAM----RVKIALAEKGIKYESKEENLF---------DKSPLLLEMNPVDKKIPVLI 58 (219)
Q Consensus 5 ~~L~~~~~s~~~~----~v~~~l~~~gi~~~~~~v~~~---------~~~~~~~~~~p~~~~vP~L~ 58 (219)
+.+|+...||+|+ .++.+....|+++..+.+|-. ....-....+. ..+|+|.
T Consensus 124 L~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v--~~~Pal~ 188 (215)
T PF13728_consen 124 LFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGV--KVTPALF 188 (215)
T ss_pred EEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCC--CcCCEEE
Confidence 6677888999997 456667788887766666521 11122234555 4689888
No 208
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=36.39 E-value=41 Score=22.07 Aligned_cols=21 Identities=14% Similarity=0.037 Sum_probs=14.2
Q ss_pred ceEEecccCChhhHHHHHHHH
Q 027726 4 NVVLLGFWPSSFAMRVKIALA 24 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~ 24 (219)
.+.+|+.+.||+|++..-.+.
T Consensus 8 ~v~~F~~~~C~~C~~~~~~~~ 28 (112)
T PF13098_consen 8 IVVVFTDPWCPYCKKLEKELF 28 (112)
T ss_dssp EEEEEE-TT-HHHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHH
Confidence 466788899999998765554
No 209
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=35.92 E-value=43 Score=24.89 Aligned_cols=22 Identities=9% Similarity=0.058 Sum_probs=18.4
Q ss_pred ceEEecccCChhhHHHHHHHHh
Q 027726 4 NVVLLGFWPSSFAMRVKIALAE 25 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~ 25 (219)
.+.+|..+.||||++..-.+..
T Consensus 80 ~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 80 VVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred EEEEEECCCCccHHHHHHHHhh
Confidence 4678888899999999887764
No 210
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=35.21 E-value=1.2e+02 Score=19.25 Aligned_cols=52 Identities=19% Similarity=0.032 Sum_probs=27.8
Q ss_pred eEEecccCChhhHHHHH----HHHhcC--CCcceeecCCCC-Cchhhh-hhCCCCCccceEe
Q 027726 5 VVLLGFWPSSFAMRVKI----ALAEKG--IKYESKEENLFD-KSPLLL-EMNPVDKKIPVLI 58 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~----~l~~~g--i~~~~~~v~~~~-~~~~~~-~~~p~~~~vP~L~ 58 (219)
+.+|+.++|+.|+...= +..... -.+....++... ....+. +.+- ..+|+++
T Consensus 21 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i--~~~Pt~~ 80 (104)
T cd02997 21 LVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNV--KGFPTFK 80 (104)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCC--ccccEEE
Confidence 56778888999987642 222221 223344444433 133443 3343 4689887
No 211
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=34.69 E-value=31 Score=26.69 Aligned_cols=22 Identities=0% Similarity=0.146 Sum_probs=18.0
Q ss_pred ceEEecccCChhhHHHHHHHHh
Q 027726 4 NVVLLGFWPSSFAMRVKIALAE 25 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~ 25 (219)
.+.+|..+.||||++..--+..
T Consensus 110 ~I~vFtDp~CpyCkkl~~~l~~ 131 (232)
T PRK10877 110 VITVFTDITCGYCHKLHEQMKD 131 (232)
T ss_pred EEEEEECCCChHHHHHHHHHHH
Confidence 4778999999999998766654
No 212
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=34.68 E-value=53 Score=24.69 Aligned_cols=34 Identities=9% Similarity=-0.120 Sum_probs=24.0
Q ss_pred ceEEecccCChhhHH----HHHHHHhcCCCcceeecCC
Q 027726 4 NVVLLGFWPSSFAMR----VKIALAEKGIKYESKEENL 37 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~----v~~~l~~~gi~~~~~~v~~ 37 (219)
+|.+|+...||||.- ++-++...+++++.+++.+
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L 39 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFL 39 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 688999999999964 4445556677666666544
No 213
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=34.63 E-value=60 Score=21.58 Aligned_cols=29 Identities=21% Similarity=0.080 Sum_probs=23.9
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCccee
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESK 33 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~ 33 (219)
-.|......|...-++.+++++|+|+++.
T Consensus 58 ~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~ 86 (100)
T PF15608_consen 58 KVLVRDPDDPDLAHLLLLAEEKGVPVEVY 86 (100)
T ss_pred EEEECCCCCccHHHHHHHHHHcCCcEEEe
Confidence 45666777899999999999999998764
No 214
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=34.31 E-value=2.6e+02 Score=22.97 Aligned_cols=71 Identities=15% Similarity=0.150 Sum_probs=43.3
Q ss_pred ecccCChhhHHHHHHHHhcCCCcc-------eeecCCCC-CchhhhhhCCCCCccceEe--eCCeeee-------hhHHH
Q 027726 8 LGFWPSSFAMRVKIALAEKGIKYE-------SKEENLFD-KSPLLLEMNPVDKKIPVLI--HDGKPIC-------ESLII 70 (219)
Q Consensus 8 ~~~~~s~~~~~v~~~l~~~gi~~~-------~~~v~~~~-~~~~~~~~~p~~~~vP~L~--~~g~~i~-------es~~I 70 (219)
|+..+|+||++..=..+++--.|+ +++...+. +...+...--- .+.|+|. .+|..+. ...+.
T Consensus 20 FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I-~KyPTlKvfrnG~~~~rEYRg~RsVeaL 98 (375)
T KOG0912|consen 20 FYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHI-NKYPTLKVFRNGEMMKREYRGQRSVEAL 98 (375)
T ss_pred eehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhcc-ccCceeeeeeccchhhhhhccchhHHHH
Confidence 556679999998877776655443 23323332 23333333333 5789998 4776554 22578
Q ss_pred HHHHHhhcC
Q 027726 71 IQYIDEVWH 79 (219)
Q Consensus 71 ~~yL~~~~~ 79 (219)
++|+.....
T Consensus 99 ~efi~kq~s 107 (375)
T KOG0912|consen 99 IEFIEKQLS 107 (375)
T ss_pred HHHHHHHhc
Confidence 888888765
No 215
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=34.27 E-value=42 Score=19.95 Aligned_cols=31 Identities=29% Similarity=0.087 Sum_probs=19.9
Q ss_pred EEecccCChhhHHHHHHHHhcCCCcceeecC
Q 027726 6 VLLGFWPSSFAMRVKIALAEKGIKYESKEEN 36 (219)
Q Consensus 6 ~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 36 (219)
+||......-+..++-+|+..||++....-.
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~ 32 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENGIPAFVKNEH 32 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT--EE--S--
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEECCc
Confidence 6777777778899999999999998775443
No 216
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=33.71 E-value=47 Score=22.80 Aligned_cols=59 Identities=14% Similarity=0.001 Sum_probs=27.3
Q ss_pred ccCChhhHHHHHHH----HhcCCCcceeecCCCC------Cchhhhh--hCCCCCccceEe--eCCeeeehhHH
Q 027726 10 FWPSSFAMRVKIAL----AEKGIKYESKEENLFD------KSPLLLE--MNPVDKKIPVLI--HDGKPICESLI 69 (219)
Q Consensus 10 ~~~s~~~~~v~~~l----~~~gi~~~~~~v~~~~------~~~~~~~--~~p~~~~vP~L~--~~g~~i~es~~ 69 (219)
.++||.|..+.-.+ ....-....+.+...+ ..-.|+. .--. ..||+|+ .++..+.|...
T Consensus 35 ~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l-~~IPTLi~~~~~~rL~e~e~ 107 (119)
T PF06110_consen 35 QSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKL-KGIPTLIRWETGERLVEEEC 107 (119)
T ss_dssp -BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC----SSSEEEECTSS-EEEHHHH
T ss_pred CcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeee-eecceEEEECCCCccchhhh
Confidence 34599998776443 3322234444444332 2223433 1123 4699999 35566766544
No 217
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=32.82 E-value=66 Score=23.07 Aligned_cols=31 Identities=13% Similarity=0.124 Sum_probs=27.4
Q ss_pred CCcceEEecccCChhhHHHHHHHHhcCCCcc
Q 027726 1 MAENVVLLGFWPSSFAMRVKIALAEKGIKYE 31 (219)
Q Consensus 1 M~~~~~L~~~~~s~~~~~v~~~l~~~gi~~~ 31 (219)
|+..+.|.|.+.|+-+...+.+.+..|++|-
T Consensus 1 ~~~~i~~~G~~GsGKst~~~~la~~lg~~~~ 31 (171)
T PRK03731 1 MTQPLFLVGARGCGKTTVGMALAQALGYRFV 31 (171)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 6667889999999999999999999999863
No 218
>PF11417 Inhibitor_G39P: Loader and inhibitor of phage G40P; InterPro: IPR024424 G39P inhibits the initiation of DNA replication by blocking G40P replicative helicase. G39P has a bipartite stricture consisting of a folded N-terminal domain and an unfolded C-terminal domain. The C-terminal is essential for helicase interaction [].; PDB: 1NO1_B.
Probab=32.58 E-value=1.2e+02 Score=18.63 Aligned_cols=37 Identities=16% Similarity=0.473 Sum_probs=23.0
Q ss_pred hhHHHHHHHHhhcCCC--CCCCCCCHHHHHHHHHHHHHHhcc
Q 027726 66 ESLIIIQYIDEVWHHK--SPLMPSDSYLRSQARFWADYVDKN 105 (219)
Q Consensus 66 es~~I~~yL~~~~~~~--~~l~p~~~~~~a~~~~~~~~~~~~ 105 (219)
|...|+.+|...|| . ..+-+.+ .+..++.|...+.+.
T Consensus 5 E~~~ll~~I~~aYP-~~~~~f~~~~--~k~~v~~W~~~L~d~ 43 (71)
T PF11417_consen 5 ETAKLLKLIKAAYP-QWAGNFKPTD--SKETVDLWYDMLKDY 43 (71)
T ss_dssp HHHHHHHHHHHHST----TT---ST--HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCC-cchhccchhh--HHHHHHHHHHHHHhC
Confidence 56678888888888 2 2333333 356788888877653
No 219
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=32.47 E-value=1.4e+02 Score=19.06 Aligned_cols=52 Identities=8% Similarity=0.013 Sum_probs=29.6
Q ss_pred eEEecccCChhhHHHHHHHH-----hcCCCcceeecCCCCCchhhhhhCCCCCccceEe
Q 027726 5 VVLLGFWPSSFAMRVKIALA-----EKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLI 58 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~-----~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~ 58 (219)
+..|+.++|+.|+...=.+. ..+..+....++..+ .+.+.+.-.. ..+|++.
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~-~~~~~~~~~i-~~~Pt~~ 76 (101)
T cd02994 20 MIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ-EPGLSGRFFV-TALPTIY 76 (101)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC-CHhHHHHcCC-cccCEEE
Confidence 56778888999986554332 223344555555543 3334332233 5689988
No 220
>PTZ00102 disulphide isomerase; Provisional
Probab=32.19 E-value=2.5e+02 Score=24.01 Aligned_cols=72 Identities=15% Similarity=0.123 Sum_probs=42.9
Q ss_pred eEEecccCChhhHHHHHHH-------HhcCCCcceeecCCCCCchhhh-hhCCCCCccceEe--eCCeee-----ehhHH
Q 027726 5 VVLLGFWPSSFAMRVKIAL-------AEKGIKYESKEENLFDKSPLLL-EMNPVDKKIPVLI--HDGKPI-----CESLI 69 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l-------~~~gi~~~~~~v~~~~~~~~~~-~~~p~~~~vP~L~--~~g~~i-----~es~~ 69 (219)
+..|+.++|+.|++..=.+ ...+-++....++... ..++. +.+- ..+|++. .+|..+ .....
T Consensus 53 lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~-~~~l~~~~~i--~~~Pt~~~~~~g~~~~y~g~~~~~~ 129 (477)
T PTZ00102 53 LVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATE-EMELAQEFGV--RGYPTIKFFNKGNPVNYSGGRTADG 129 (477)
T ss_pred EEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCC-CHHHHHhcCC--CcccEEEEEECCceEEecCCCCHHH
Confidence 5678888999998664211 2223345555565543 33343 3343 4589887 354321 24577
Q ss_pred HHHHHHhhcC
Q 027726 70 IIQYIDEVWH 79 (219)
Q Consensus 70 I~~yL~~~~~ 79 (219)
|.+|+.+...
T Consensus 130 l~~~l~~~~~ 139 (477)
T PTZ00102 130 IVSWIKKLTG 139 (477)
T ss_pred HHHHHHHhhC
Confidence 9999988765
No 221
>PRK15371 effector protein YopJ; Provisional
Probab=31.35 E-value=1.7e+02 Score=23.54 Aligned_cols=65 Identities=8% Similarity=0.199 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccCCCCChhHHHHHhhhhhhhhhhhhcCCcccccCchHHHHHHHHh
Q 027726 123 AAKKEMIGFLKNMEAELGDKHFFGGESIGFVDVALVPFTTWFYTYETFGNLSVEAECPKLIAWAKRCS 190 (219)
Q Consensus 123 ~~~~~l~~~l~~le~~L~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~ 190 (219)
...+++...++.||..++++.|+- ..++..|+-+.+.+...... .+++.++ .-+..-...++.+.
T Consensus 23 ~~~~~L~~~i~~le~~~~~G~~~~-~~~~~~Di~~lp~lv~~~N~-r~P~LNL-~~f~s~~~f~~aik 87 (287)
T PRK15371 23 ISNEELKNIITQLEDDIADGSWIH-KNYARTDLEVMPALVAQANN-KYPEMNL-KLVTSPLDLSIEIK 87 (287)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCCC-chhHHhhHHhhHHHHHHHhc-cCCCCCe-eecCCHHHHHHHHH
Confidence 466778999999999999888884 56999999999998765532 3666666 33334444444444
No 222
>PRK14531 adenylate kinase; Provisional
Probab=30.84 E-value=73 Score=23.34 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=27.0
Q ss_pred CCcceEEecccCChhhHHHHHHHHhcCCCc
Q 027726 1 MAENVVLLGFWPSSFAMRVKIALAEKGIKY 30 (219)
Q Consensus 1 M~~~~~L~~~~~s~~~~~v~~~l~~~gi~~ 30 (219)
|..++.+.|.|+|+-+...+.+.+..|+++
T Consensus 1 ~~~~i~i~G~pGsGKsT~~~~la~~~g~~~ 30 (183)
T PRK14531 1 MKQRLLFLGPPGAGKGTQAARLCAAHGLRH 30 (183)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 666799999999999999999999999875
No 223
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=30.52 E-value=38 Score=25.27 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=21.1
Q ss_pred CCeeeehhHHHHHHHHhhcC-CCCCCCC
Q 027726 60 DGKPICESLIIIQYIDEVWH-HKSPLMP 86 (219)
Q Consensus 60 ~g~~i~es~~I~~yL~~~~~-~~~~l~p 86 (219)
.+..|+||..|-+|+.++|+ .+..+.|
T Consensus 154 ad~lIaDs~~I~~y~~~~y~~~~s~~Ia 181 (185)
T PF09314_consen 154 ADRLIADSKGIQDYIKERYGRKKSTFIA 181 (185)
T ss_pred CCEEEEcCHHHHHHHHHHcCCCCcEEec
Confidence 45789999999999999998 4444443
No 224
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=30.40 E-value=1.6e+02 Score=19.96 Aligned_cols=57 Identities=16% Similarity=0.149 Sum_probs=31.7
Q ss_pred eEEecccCChhhHHHHHHHHh-----cCCCcceeecCCCCCchhhhhhCCCCCccceEe--eCCeee
Q 027726 5 VVLLGFWPSSFAMRVKIALAE-----KGIKYESKEENLFDKSPLLLEMNPVDKKIPVLI--HDGKPI 64 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~i 64 (219)
+.-|+.++||.|+.+.=.+.. .|. .....||..+ .+++....-- ..+|++. .+|..+
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD~-~~~la~~~~V-~~iPTf~~fk~G~~v 81 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDE-VPDFNKMYEL-YDPPTVMFFFRNKHM 81 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCc-eEEEEEECCC-CHHHHHHcCC-CCCCEEEEEECCEEE
Confidence 334777889999866544432 222 2344555554 3344433233 4699999 466543
No 225
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.85 E-value=55 Score=20.50 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=19.9
Q ss_pred ChhhHHHHHHHHhcCCCcceeec
Q 027726 13 SSFAMRVKIALAEKGIKYESKEE 35 (219)
Q Consensus 13 s~~~~~v~~~l~~~gi~~~~~~v 35 (219)
-+|++|+.-.++..|++|+..+-
T Consensus 15 vGF~rk~L~I~E~~~is~Eh~PS 37 (76)
T cd04911 15 VGFGRKLLSILEDNGISYEHMPS 37 (76)
T ss_pred hcHHHHHHHHHHHcCCCEeeecC
Confidence 57999999999999999987543
No 226
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=29.55 E-value=53 Score=25.73 Aligned_cols=21 Identities=5% Similarity=-0.119 Sum_probs=17.3
Q ss_pred ceEEecccCChhhHHHHHHHH
Q 027726 4 NVVLLGFWPSSFAMRVKIALA 24 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~ 24 (219)
.+.+|..+.||||++..--+.
T Consensus 120 ~I~vFtDp~CpyC~kl~~~l~ 140 (251)
T PRK11657 120 IVYVFADPNCPYCKQFWQQAR 140 (251)
T ss_pred EEEEEECCCChhHHHHHHHHH
Confidence 377888999999999977654
No 227
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=29.07 E-value=1.1e+02 Score=20.89 Aligned_cols=40 Identities=15% Similarity=-0.095 Sum_probs=32.2
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecCCCCCchhh
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEENLFDKSPLL 44 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~ 44 (219)
+.|+|.++++-+..++.+++..+.++..+.++......++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl 41 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDL 41 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccc
Confidence 6799999999999999999999999888877765434333
No 228
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=28.80 E-value=2.1e+02 Score=23.23 Aligned_cols=73 Identities=18% Similarity=0.160 Sum_probs=47.3
Q ss_pred eEEecccCChhhHHHHHH----HHhcCCCcceeecCCCCCchhhhhhCCCCCccceEe--eCCeeeeh------hHHHHH
Q 027726 5 VVLLGFWPSSFAMRVKIA----LAEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLI--HDGKPICE------SLIIIQ 72 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~----l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~i~e------s~~I~~ 72 (219)
+.+|+.+.|+-|....=. .++.+=.|....|+.+..+.--..... ..+|+.. -+|..+.+ -..|-+
T Consensus 47 lV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgi--qsIPtV~af~dGqpVdgF~G~qPesqlr~ 124 (304)
T COG3118 47 LVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGV--QSIPTVYAFKDGQPVDGFQGAQPESQLRQ 124 (304)
T ss_pred EEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCc--CcCCeEEEeeCCcCccccCCCCcHHHHHH
Confidence 566777778888754433 334455678888887764333334555 5799988 36655432 357889
Q ss_pred HHHhhcC
Q 027726 73 YIDEVWH 79 (219)
Q Consensus 73 yL~~~~~ 79 (219)
||++..+
T Consensus 125 ~ld~~~~ 131 (304)
T COG3118 125 FLDKVLP 131 (304)
T ss_pred HHHHhcC
Confidence 9998877
No 229
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.80 E-value=2e+02 Score=19.91 Aligned_cols=68 Identities=10% Similarity=-0.032 Sum_probs=39.9
Q ss_pred ccCChhhHHHH----HHHHhcCCCcceeecCCCCCchhhhhhCCC-----C-CccceEee-C--CeeeehhHHHHHHHHh
Q 027726 10 FWPSSFAMRVK----IALAEKGIKYESKEENLFDKSPLLLEMNPV-----D-KKIPVLIH-D--GKPICESLIIIQYIDE 76 (219)
Q Consensus 10 ~~~s~~~~~v~----~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~-----~-~~vP~L~~-~--g~~i~es~~I~~yL~~ 76 (219)
.++||.|.++. =++.+....+..+.+...+.+.|.-.-||+ . .-||+|.. + +..+.+...--..|.+
T Consensus 42 qSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~Lve 121 (128)
T KOG3425|consen 42 QSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKRQPQRLDGLQCLNDHLVE 121 (128)
T ss_pred CcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcCccccchHhHhhHHHHHH
Confidence 34599998654 445666777777777766554443332332 0 24788883 3 3456666666666655
Q ss_pred h
Q 027726 77 V 77 (219)
Q Consensus 77 ~ 77 (219)
.
T Consensus 122 ~ 122 (128)
T KOG3425|consen 122 M 122 (128)
T ss_pred H
Confidence 4
No 230
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=28.72 E-value=1.7e+02 Score=18.97 Aligned_cols=59 Identities=14% Similarity=0.104 Sum_probs=30.6
Q ss_pred eEEecccCChhhHHHHHHHHhc---CCCcceeecCCCCCc--hhhhhhCCCCCccceEe--eCCeee
Q 027726 5 VVLLGFWPSSFAMRVKIALAEK---GIKYESKEENLFDKS--PLLLEMNPVDKKIPVLI--HDGKPI 64 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~---gi~~~~~~v~~~~~~--~~~~~~~p~~~~vP~L~--~~g~~i 64 (219)
+..|+.++|+.|+...=.+... --.+....++..+.. .++.+..-- ..+|++. .+|..+
T Consensus 19 vv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V-~~~Pt~~~~~~G~~v 84 (103)
T cd02985 19 VLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKI-IEVPHFLFYKDGEKI 84 (103)
T ss_pred EEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCC-CcCCEEEEEeCCeEE
Confidence 4456677799888654433321 012344555544322 244433333 4699888 366543
No 231
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=28.14 E-value=1.6e+02 Score=18.56 Aligned_cols=56 Identities=14% Similarity=0.077 Sum_probs=30.6
Q ss_pred eEEecccCChhhHHHHHHH-----HhcC--CCcceeecCCCCCchhhhhhCCCCCccceEe--eCCe
Q 027726 5 VVLLGFWPSSFAMRVKIAL-----AEKG--IKYESKEENLFDKSPLLLEMNPVDKKIPVLI--HDGK 62 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l-----~~~g--i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~ 62 (219)
+..|+.++|+.|+...-.+ ...+ -.+....++......-....+. ..+|++. .+|.
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v--~~~Pt~~~~~~g~ 84 (102)
T cd03005 20 FVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQV--RGYPTLLLFKDGE 84 (102)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCC--CcCCEEEEEeCCC
Confidence 5567788899998653322 3333 2355555665432222223443 5689877 3544
No 232
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=27.75 E-value=2e+02 Score=19.62 Aligned_cols=56 Identities=9% Similarity=-0.008 Sum_probs=28.5
Q ss_pred cCChhhHHHHHH----HHhcCCCcceeecCCCC------CchhhhhhCCCCC-ccceEe--eCCeeeehh
Q 027726 11 WPSSFAMRVKIA----LAEKGIKYESKEENLFD------KSPLLLEMNPVDK-KIPVLI--HDGKPICES 67 (219)
Q Consensus 11 ~~s~~~~~v~~~----l~~~gi~~~~~~v~~~~------~~~~~~~~~p~~~-~vP~L~--~~g~~i~es 67 (219)
++||.|+...-. .....-.+.+..|+..+ ....+...--. . .+|++. .++..+.|.
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I-~~~iPT~~~~~~~~~l~~~ 106 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL-TTGVPTLLRWKTPQRLVED 106 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc-ccCCCEEEEEcCCceecch
Confidence 689999866433 33333224445555432 22344332121 3 599999 355555443
No 233
>PRK09266 hypothetical protein; Provisional
Probab=27.51 E-value=95 Score=24.37 Aligned_cols=58 Identities=16% Similarity=0.196 Sum_probs=39.2
Q ss_pred HHHhcCCCcceeecCCCC--CchhhhhhCCCCCccceEeeCCeeeehhHHHHHHHHhhcC
Q 027726 22 ALAEKGIKYESKEENLFD--KSPLLLEMNPVDKKIPVLIHDGKPICESLIIIQYIDEVWH 79 (219)
Q Consensus 22 ~l~~~gi~~~~~~v~~~~--~~~~~~~~~p~~~~vP~L~~~g~~i~es~~I~~yL~~~~~ 79 (219)
.+...|+++++..+++.+ ..++..-.|...|-+||-..|+..+.+...|.+.|.+.|.
T Consensus 200 ~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i~~~~~~~~~~~~~~l~~~~~ 259 (266)
T PRK09266 200 GLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAIDDVALPDSHALLELLRRAYE 259 (266)
T ss_pred HHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEECCEECCCCchHHHHHHHHHH
Confidence 456779999998888653 2333333444338899999887777655677777766654
No 234
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=27.18 E-value=1e+02 Score=22.74 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=27.1
Q ss_pred CcceEEecccCChhhHHHHHHHHhcCCCcc
Q 027726 2 AENVVLLGFWPSSFAMRVKIALAEKGIKYE 31 (219)
Q Consensus 2 ~~~~~L~~~~~s~~~~~v~~~l~~~gi~~~ 31 (219)
..++.|.|+++++-|.--+.++...|++|-
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~ 31 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFI 31 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcc
Confidence 346899999999999999999999999983
No 235
>PRK13949 shikimate kinase; Provisional
Probab=27.04 E-value=95 Score=22.52 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=26.3
Q ss_pred CCcceEEecccCChhhHHHHHHHHhcCCCcc
Q 027726 1 MAENVVLLGFWPSSFAMRVKIALAEKGIKYE 31 (219)
Q Consensus 1 M~~~~~L~~~~~s~~~~~v~~~l~~~gi~~~ 31 (219)
|. ++.|.|.++|+-+.-.+.+....|++|-
T Consensus 1 m~-~I~liG~~GsGKstl~~~La~~l~~~~i 30 (169)
T PRK13949 1 MA-RIFLVGYMGAGKTTLGKALARELGLSFI 30 (169)
T ss_pred Cc-EEEEECCCCCCHHHHHHHHHHHcCCCee
Confidence 54 6899999999999999999999998753
No 236
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=26.84 E-value=1.1e+02 Score=21.09 Aligned_cols=52 Identities=12% Similarity=-0.029 Sum_probs=26.4
Q ss_pred cccCChhhHHHHHHHH-----hcCCCcceeecCCCCC--chhhhhhCCCCCccceEeeCCe
Q 027726 9 GFWPSSFAMRVKIALA-----EKGIKYESKEENLFDK--SPLLLEMNPVDKKIPVLIHDGK 62 (219)
Q Consensus 9 ~~~~s~~~~~v~~~l~-----~~gi~~~~~~v~~~~~--~~~~~~~~p~~~~vP~L~~~g~ 62 (219)
...+||.|+.-.-.|. +.+..++.+-|+..+. ...+.+... -.+|++.|.+.
T Consensus 32 ~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~--~~~p~~~D~~~ 90 (149)
T cd02970 32 RGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKF--LPFPVYADPDR 90 (149)
T ss_pred CCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcC--CCCeEEECCch
Confidence 3567999976433332 2122344555554432 223444443 34788887543
No 237
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=26.73 E-value=57 Score=19.40 Aligned_cols=22 Identities=41% Similarity=0.520 Sum_probs=16.6
Q ss_pred ceEEecccC----ChhhHHHHHHHHh
Q 027726 4 NVVLLGFWP----SSFAMRVKIALAE 25 (219)
Q Consensus 4 ~~~L~~~~~----s~~~~~v~~~l~~ 25 (219)
+++||.+-. |.||+||-.+|..
T Consensus 2 ~mKLYRfiTGpDDssFChrvta~LN~ 27 (70)
T COG5515 2 KMKLYRFITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred cceeeEeecCCchHHHHHHHHHHHhC
Confidence 477877643 7899999988864
No 238
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=26.70 E-value=3e+02 Score=21.21 Aligned_cols=72 Identities=15% Similarity=0.074 Sum_probs=40.2
Q ss_pred eEEecccCChhhHHHHHHHH-----hcCCCcceeecCCCCCchhhhhhCCCCCccceEe--eCCeee------ehhHHHH
Q 027726 5 VVLLGFWPSSFAMRVKIALA-----EKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLI--HDGKPI------CESLIII 71 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~-----~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~i------~es~~I~ 71 (219)
+..|+.++|+.|+...-.+. +.| .+....+|..+ .+.+.+..-- ..+|++. .+|..+ .....|.
T Consensus 56 lV~FyApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~-~~~l~~~~~I-~~~PTl~~f~~G~~v~~~~G~~s~e~L~ 132 (224)
T PTZ00443 56 FVKFYAPWCSHCRKMAPAWERLAKALKG-QVNVADLDATR-ALNLAKRFAI-KGYPTLLLFDKGKMYQYEGGDRSTEKLA 132 (224)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCcc-cHHHHHHcCC-CcCCEEEEEECCEEEEeeCCCCCHHHHH
Confidence 56778888999986544332 222 24444455443 3344433233 5689888 466543 2345666
Q ss_pred HHHHhhcC
Q 027726 72 QYIDEVWH 79 (219)
Q Consensus 72 ~yL~~~~~ 79 (219)
+|+.+.+.
T Consensus 133 ~fi~~~~~ 140 (224)
T PTZ00443 133 AFALGDFK 140 (224)
T ss_pred HHHHHHHH
Confidence 77766654
No 239
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=26.39 E-value=68 Score=19.81 Aligned_cols=22 Identities=9% Similarity=-0.085 Sum_probs=17.3
Q ss_pred eEEecccCChhhHHHHHHHHhc
Q 027726 5 VVLLGFWPSSFAMRVKIALAEK 26 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~ 26 (219)
+.+|..+.||+|....-.+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 4678888999999887777654
No 240
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=25.93 E-value=92 Score=19.64 Aligned_cols=53 Identities=11% Similarity=-0.093 Sum_probs=28.8
Q ss_pred ceEEecccCChhhHHHHHHH-----HhcCC-CcceeecCCCCCchhhhhhCCCCCccceEe
Q 027726 4 NVVLLGFWPSSFAMRVKIAL-----AEKGI-KYESKEENLFDKSPLLLEMNPVDKKIPVLI 58 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l-----~~~gi-~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~ 58 (219)
-+..|+.++|+.|+...-.+ ...+- .+....++... ...+...... ..+|++.
T Consensus 16 ~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~i-~~~P~~~ 74 (102)
T TIGR01126 16 VLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA-EKDLASRFGV-SGFPTIK 74 (102)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc-hHHHHHhCCC-CcCCEEE
Confidence 36788888999998753333 22321 13334444332 3444433233 5699886
No 241
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=25.90 E-value=2.3e+02 Score=19.50 Aligned_cols=61 Identities=11% Similarity=0.180 Sum_probs=34.8
Q ss_pred EEecccCChhhHHHHH-------HHHhcCCCcceeecCCCCCchh---hhh----hCCCCCccceEe--e-CCeeeehh
Q 027726 6 VLLGFWPSSFAMRVKI-------ALAEKGIKYESKEENLFDKSPL---LLE----MNPVDKKIPVLI--H-DGKPICES 67 (219)
Q Consensus 6 ~L~~~~~s~~~~~v~~-------~l~~~gi~~~~~~v~~~~~~~~---~~~----~~p~~~~vP~L~--~-~g~~i~es 67 (219)
..++...|++|++..- +.....-.|..+.+|..+.++- +.. ..-. +-+|+++ + +|..+..+
T Consensus 20 l~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~-~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 20 LSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQ-GGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred EEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCC-CCCCEEEEECCCCCEEeee
Confidence 3466777999987742 2223333677777776543221 111 1122 4589988 3 67777665
No 242
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=25.87 E-value=1.1e+02 Score=16.21 Aligned_cols=24 Identities=8% Similarity=0.090 Sum_probs=19.4
Q ss_pred CccceEeeCCeeeehhHHHHHHHH
Q 027726 52 KKIPVLIHDGKPICESLIIIQYID 75 (219)
Q Consensus 52 ~~vP~L~~~g~~i~es~~I~~yL~ 75 (219)
|.+|....++..+.....|.+|+.
T Consensus 25 g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 25 GELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred CCCCeEEeCCeEEEeHHHHHHHHh
Confidence 678887777788888888888875
No 243
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=25.65 E-value=1.9e+02 Score=18.75 Aligned_cols=56 Identities=14% Similarity=0.068 Sum_probs=31.1
Q ss_pred eEEecccCChhhHHHHHHHHhc-----C-C----CcceeecCCCCCchhhhhhCCCCCccceEe--eCCe
Q 027726 5 VVLLGFWPSSFAMRVKIALAEK-----G-I----KYESKEENLFDKSPLLLEMNPVDKKIPVLI--HDGK 62 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~-----g-i----~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~ 62 (219)
+..|+.++|+.|+...-.+... + . .+....+|.... ..+....-. ..+|++. .+|.
T Consensus 22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~-~~l~~~~~v-~~~Ptl~~~~~g~ 89 (108)
T cd02996 22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE-SDIADRYRI-NKYPTLKLFRNGM 89 (108)
T ss_pred EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-HHHHHhCCC-CcCCEEEEEeCCc
Confidence 4577788899998776555321 1 1 234444555443 344333233 5689988 3554
No 244
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=25.57 E-value=1.9e+02 Score=18.58 Aligned_cols=51 Identities=10% Similarity=-0.008 Sum_probs=27.8
Q ss_pred eEEecccCChhhHHHHHHH-----Hhc--CCCcceeecCCCCCchhhh-hhCCCCCccceEe
Q 027726 5 VVLLGFWPSSFAMRVKIAL-----AEK--GIKYESKEENLFDKSPLLL-EMNPVDKKIPVLI 58 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l-----~~~--gi~~~~~~v~~~~~~~~~~-~~~p~~~~vP~L~ 58 (219)
+..|+.++||.|++..-.+ .+. |..+....++.... +.+. ..+. ..+|++.
T Consensus 19 lv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~I--~~~Pt~~ 77 (104)
T cd03000 19 LVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY-SSIASEFGV--RGYPTIK 77 (104)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC-HhHHhhcCC--ccccEEE
Confidence 4567777899998554333 221 33344444554432 2333 3444 4689988
No 245
>PRK13947 shikimate kinase; Provisional
Probab=24.99 E-value=1.1e+02 Score=21.92 Aligned_cols=29 Identities=24% Similarity=0.332 Sum_probs=26.3
Q ss_pred CCcceEEecccCChhhHHHHHHHHhcCCCc
Q 027726 1 MAENVVLLGFWPSSFAMRVKIALAEKGIKY 30 (219)
Q Consensus 1 M~~~~~L~~~~~s~~~~~v~~~l~~~gi~~ 30 (219)
|. .+.|.|.++|+-+.-.+.+++..|++|
T Consensus 1 m~-~I~l~G~~GsGKst~a~~La~~lg~~~ 29 (171)
T PRK13947 1 MK-NIVLIGFMGTGKTTVGKRVATTLSFGF 29 (171)
T ss_pred CC-eEEEEcCCCCCHHHHHHHHHHHhCCCE
Confidence 55 589999999999999999999999987
No 246
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=24.64 E-value=1.9e+02 Score=21.03 Aligned_cols=34 Identities=9% Similarity=-0.204 Sum_probs=21.3
Q ss_pred EEecccC-ChhhH-------HHHHHHHhcCCCcceeecCCCC
Q 027726 6 VLLGFWP-SSFAM-------RVKIALAEKGIKYESKEENLFD 39 (219)
Q Consensus 6 ~L~~~~~-s~~~~-------~v~~~l~~~gi~~~~~~v~~~~ 39 (219)
.||.+.. ||-|+ +..-.+...+-+|+++.|+.+.
T Consensus 37 ~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~ 78 (157)
T KOG2501|consen 37 GLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDR 78 (157)
T ss_pred EEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCC
Confidence 3444332 66665 3344466667789999998773
No 247
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=24.63 E-value=2.5e+02 Score=19.60 Aligned_cols=58 Identities=12% Similarity=-0.032 Sum_probs=30.3
Q ss_pred eEEecccCChhhHHHHHHHH----hcCCCcceeecCCCCC-chhh-hhhCCCCCccceEe--e-CCeee
Q 027726 5 VVLLGFWPSSFAMRVKIALA----EKGIKYESKEENLFDK-SPLL-LEMNPVDKKIPVLI--H-DGKPI 64 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~----~~gi~~~~~~v~~~~~-~~~~-~~~~p~~~~vP~L~--~-~g~~i 64 (219)
+..|+.++|+.|+...=.+. ..+-.+.++.++.... ...+ ...+- ..+|++. + +|.++
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V--~~iPt~v~~~~~G~~v 90 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRV--DGIPHFVFLDREGNEE 90 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCC--CCCCEEEEECCCCCEE
Confidence 45667778999986654443 2222234454554422 1233 23343 4589887 3 46543
No 248
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=24.07 E-value=2.9e+02 Score=20.19 Aligned_cols=58 Identities=16% Similarity=-0.007 Sum_probs=32.1
Q ss_pred eEEecccCChhhHHHHHHH----HhcCCCcceeecCCCCCchhhhhhCCCCCccceEe--eCCeeeeh
Q 027726 5 VVLLGFWPSSFAMRVKIAL----AEKGIKYESKEENLFDKSPLLLEMNPVDKKIPVLI--HDGKPICE 66 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l----~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~i~e 66 (219)
+..|+.++|+.|..+--.| .... .+....|+.... ......+. ..+|++. .+|..+..
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~--~l~~~f~v-~~vPTlllyk~G~~v~~ 150 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT--GASDEFDT-DALPALLVYKGGELIGN 150 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch--hhHHhCCC-CCCCEEEEEECCEEEEE
Confidence 3456677899897554322 2221 234455554432 34444454 6799999 47766543
No 249
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=24.02 E-value=1.8e+02 Score=17.70 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=20.0
Q ss_pred ccceEeeCCeeeehhHHHHHHHHhh
Q 027726 53 KIPVLIHDGKPICESLIIIQYIDEV 77 (219)
Q Consensus 53 ~vP~L~~~g~~i~es~~I~~yL~~~ 77 (219)
+=||+..+| ..+|-.+|.+||.+.
T Consensus 15 ~dPVi~~~G-~tyer~~I~~~l~~~ 38 (73)
T PF04564_consen 15 RDPVILPSG-HTYERSAIERWLEQN 38 (73)
T ss_dssp SSEEEETTS-EEEEHHHHHHHHCTT
T ss_pred hCceeCCcC-CEEcHHHHHHHHHcC
Confidence 458888777 789999999999883
No 250
>PF03421 YopJ: YopJ Serine/Threonine acetyltransferase; InterPro: IPR005083 The infection of mammalian host cells by Yersinia sp. causes a rapid induction of the mitogen-activated protein kinase (MAPK; including the ERK, JNK and p38 pathways) and nuclear factor kappaB (NF-kappaB) signalling pathways that would typically result in cytokine production and initiation of the innate immune response. However, these pathways are rapidly inhibited promoting apoptosis. YopJ has been shown to block phosphorylation of active site residues []. It has also been shown that YopJ acetyltransferase is activated by eukaryotic host cell inositol hexakisphosphate []. Serine and threonine acetylation is yet another complication to the control of signalling pathways and may be a may be a widespread mode of biochemical regulation of endogenous processes in eukaryotic cells. It has been shown that YopJ is a serine/threonine acetyltransferase []. It acetylates the serine and threonine residues in the phosphorylation sites of MAPK kinases and nuclear factor kappaB, preventing their activation by phosphorylation and the inhibition of these signalling pathways []. This entry contains YopJ and related proteins.
Probab=23.85 E-value=2.5e+02 Score=20.72 Aligned_cols=72 Identities=11% Similarity=0.180 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHhCCCCcccCCCCChhHHHHHhhhhhhhhhhhhcCCcccccCchHHHHHHHHhc----ccchhccCC
Q 027726 126 KEMIGFLKNMEAELGDKHFFGGESIGFVDVALVPFTTWFYTYETFGNLSVEAECPKLIAWAKRCSQ----KESVSASLA 200 (219)
Q Consensus 126 ~~l~~~l~~le~~L~~~~~l~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~----~~~~~~~~~ 200 (219)
+.+......++..+..+.|+ .+.++..|+-+.+.+...... .+++.++ .-+..-....+.+.+ ..+||.++.
T Consensus 2 ~~L~~y~~~~~~~~~~g~~~-~~~~~~~D~~~lp~lv~~~N~-r~P~LnL-~~~~~~~~~~~~i~~~~~~~~s~R~Iv~ 77 (177)
T PF03421_consen 2 ESLKEYIERLEDDIKNGSWP-NESYAELDIKMLPALVAAENA-RYPGLNL-HFFDSPEDFVQAIKEINSGPQSWRAIVN 77 (177)
T ss_pred hHHHHHHHHHHHHHHhCCCC-CcchhhhhHHHHHHHHHHHhh-cCCCCce-EEcCCcHHHHHHHHhhcCCCCceEEEEe
Confidence 34667778889999888888 677999999999998765532 3566665 233333455555532 455555543
No 251
>PRK06217 hypothetical protein; Validated
Probab=23.78 E-value=1.1e+02 Score=22.42 Aligned_cols=29 Identities=14% Similarity=-0.034 Sum_probs=25.7
Q ss_pred CCcceEEecccCChhhHHHHHHHHhcCCCc
Q 027726 1 MAENVVLLGFWPSSFAMRVKIALAEKGIKY 30 (219)
Q Consensus 1 M~~~~~L~~~~~s~~~~~v~~~l~~~gi~~ 30 (219)
|. ++.+.|.++|+-+...+.+.+..|+++
T Consensus 1 ~~-~I~i~G~~GsGKSTla~~L~~~l~~~~ 29 (183)
T PRK06217 1 MM-RIHITGASGSGTTTLGAALAERLDIPH 29 (183)
T ss_pred Ce-EEEEECCCCCCHHHHHHHHHHHcCCcE
Confidence 44 689999999999999999999999874
No 252
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=23.60 E-value=2.3e+02 Score=21.45 Aligned_cols=44 Identities=11% Similarity=0.120 Sum_probs=25.6
Q ss_pred hhhHHHHHHHHhcCCCccee---ecCCCCCchhhhhhCCCCCccceEe
Q 027726 14 SFAMRVKIALAEKGIKYESK---EENLFDKSPLLLEMNPVDKKIPVLI 58 (219)
Q Consensus 14 ~~~~~v~~~l~~~gi~~~~~---~v~~~~~~~~~~~~~p~~~~vP~L~ 58 (219)
..-.+||..+..+|||.+.+ .|.+....-.+..+.-. |++|+++
T Consensus 146 ~dD~~Ir~WA~~~~Idp~~V~~~~ITLNHD~G~w~~lg~~-g~lP~~l 192 (200)
T TIGR03759 146 GDDERIRQWANRHQIDPAKVRSRQITLNHDNGRWLQLGLQ-GQLPAVV 192 (200)
T ss_pred CCHHHHHHHHHHcCCCHHHeecCeeEEecCcchHHHccCC-CCCCEEE
Confidence 34466777777777764333 34444334444555534 7888887
No 253
>PRK08118 topology modulation protein; Reviewed
Probab=23.43 E-value=1.2e+02 Score=21.88 Aligned_cols=30 Identities=17% Similarity=0.124 Sum_probs=26.6
Q ss_pred CCcceEEecccCChhhHHHHHHHHhcCCCcc
Q 027726 1 MAENVVLLGFWPSSFAMRVKIALAEKGIKYE 31 (219)
Q Consensus 1 M~~~~~L~~~~~s~~~~~v~~~l~~~gi~~~ 31 (219)
|. ++.+.|.++|+-+...+.+....|+++.
T Consensus 1 m~-rI~I~G~~GsGKSTlak~L~~~l~~~~~ 30 (167)
T PRK08118 1 MK-KIILIGSGGSGKSTLARQLGEKLNIPVH 30 (167)
T ss_pred Cc-EEEEECCCCCCHHHHHHHHHHHhCCCce
Confidence 54 7899999999999999999999999853
No 254
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=23.14 E-value=2e+02 Score=22.42 Aligned_cols=32 Identities=13% Similarity=0.170 Sum_probs=26.2
Q ss_pred ceEEecccCChhhHHHHHHHHhcCCCcceeec
Q 027726 4 NVVLLGFWPSSFAMRVKIALAEKGIKYESKEE 35 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v 35 (219)
.+.|||.|+++-+.-.++++.+.|.+|.....
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg 83 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANELGVNFKITSG 83 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHCT--EEEEEC
T ss_pred eEEEECCCccchhHHHHHHHhccCCCeEeccc
Confidence 47899999999999999999999999875443
No 255
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=23.10 E-value=3.9e+02 Score=22.48 Aligned_cols=73 Identities=14% Similarity=0.055 Sum_probs=42.3
Q ss_pred eEEecccCChhhHHHHHHH-----Hh--cCCCcceeecCCCCCchhhhhhCCCCCccceEe--eCCee-------eehhH
Q 027726 5 VVLLGFWPSSFAMRVKIAL-----AE--KGIKYESKEENLFDKSPLLLEMNPVDKKIPVLI--HDGKP-------ICESL 68 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l-----~~--~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~-------i~es~ 68 (219)
+.+|+.++|+.|+...-.+ .. .+-.+....++.... .++.+.-.. ..+|++. .+|.. -.+..
T Consensus 22 ~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-~~l~~~~~i-~~~Pt~~~~~~g~~~~~~~~g~~~~~ 99 (462)
T TIGR01130 22 LVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE-KDLAQKYGV-SGYPTLKIFRNGEDSVSDYNGPRDAD 99 (462)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc-HHHHHhCCC-ccccEEEEEeCCccceeEecCCCCHH
Confidence 5678888999998764222 12 232355555665442 344332232 4589887 34443 12557
Q ss_pred HHHHHHHhhcC
Q 027726 69 IIIQYIDEVWH 79 (219)
Q Consensus 69 ~I~~yL~~~~~ 79 (219)
.|.+|+.+..+
T Consensus 100 ~l~~~i~~~~~ 110 (462)
T TIGR01130 100 GIVKYMKKQSG 110 (462)
T ss_pred HHHHHHHHhcC
Confidence 78888888765
No 256
>COG3150 Predicted esterase [General function prediction only]
Probab=22.81 E-value=1.1e+02 Score=22.72 Aligned_cols=33 Identities=18% Similarity=0.073 Sum_probs=26.9
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcceeecCC
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYESKEENL 37 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~ 37 (219)
+-|+|+..||.+.+..+++++.+-.+..+.+..
T Consensus 3 lYlHGFnSSP~shka~l~~q~~~~~~~~i~y~~ 35 (191)
T COG3150 3 LYLHGFNSSPGSHKAVLLLQFIDEDVRDIEYST 35 (191)
T ss_pred EEEecCCCCcccHHHHHHHHHHhccccceeeec
Confidence 458899999999999999999887766555543
No 257
>PRK14530 adenylate kinase; Provisional
Probab=22.73 E-value=1.2e+02 Score=22.91 Aligned_cols=28 Identities=18% Similarity=0.156 Sum_probs=25.5
Q ss_pred cceEEecccCChhhHHHHHHHHhcCCCc
Q 027726 3 ENVVLLGFWPSSFAMRVKIALAEKGIKY 30 (219)
Q Consensus 3 ~~~~L~~~~~s~~~~~v~~~l~~~gi~~ 30 (219)
..+.+.|.+.|+-+...+.+++..|+++
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~ 31 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEH 31 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 6788999999999999999999999875
No 258
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=22.57 E-value=92 Score=22.51 Aligned_cols=43 Identities=16% Similarity=0.265 Sum_probs=29.5
Q ss_pred ccCchHHHHHHHHhc-ccchhccCCChhh--------HHHHHHHHHHHhcCC
Q 027726 177 AECPKLIAWAKRCSQ-KESVSASLADPHD--------IYDFALGLRMKYGIQ 219 (219)
Q Consensus 177 ~~~p~l~~~~~~~~~-~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 219 (219)
+.|-|+++|.+.++. -|++.+++-..+. ..+-..+++.++||+
T Consensus 94 ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie 145 (198)
T KOG0079|consen 94 ESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIE 145 (198)
T ss_pred hhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcCch
Confidence 568899999999987 5888887633221 124556677777764
No 259
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=22.43 E-value=1.4e+02 Score=19.77 Aligned_cols=28 Identities=11% Similarity=0.048 Sum_probs=24.2
Q ss_pred eEEecccCChhhHHHHHHHHhcCCCcce
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGIKYES 32 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~ 32 (219)
+.|+|.++++-+.-++.++...|.++-.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~ 28 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIE 28 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccc
Confidence 4689999999999999999999977533
No 260
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=21.30 E-value=2.4e+02 Score=18.09 Aligned_cols=54 Identities=17% Similarity=-0.015 Sum_probs=29.3
Q ss_pred ceEEecccCChhhHHHHHHHH----hcCCCcceeecCCCC-CchhhhhhCCCCCccceEe
Q 027726 4 NVVLLGFWPSSFAMRVKIALA----EKGIKYESKEENLFD-KSPLLLEMNPVDKKIPVLI 58 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~----~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~ 58 (219)
-+..|+.++|+.|+...-.+. ..+-.+....++... ....+...... ..+|++.
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i-~~~Pt~~ 79 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGV-QGFPTLK 79 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCC-CcCCEEE
Confidence 366788888999986543332 222223444455443 13344433233 5689988
No 261
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=20.67 E-value=2e+02 Score=19.27 Aligned_cols=51 Identities=8% Similarity=-0.128 Sum_probs=29.5
Q ss_pred eEEecccCChhhHHHHHHHHhcCC----CcceeecCCCCCchhhh--hhCCCCCccceEe
Q 027726 5 VVLLGFWPSSFAMRVKIALAEKGI----KYESKEENLFDKSPLLL--EMNPVDKKIPVLI 58 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi----~~~~~~v~~~~~~~~~~--~~~p~~~~vP~L~ 58 (219)
+..|+.++|+.|+...-.++...- ......||... ..... +.+- ..+|++.
T Consensus 33 lV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~-~~~l~~~~~~I--~~~PTl~ 89 (113)
T cd03006 33 LVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWW-PQGKCRKQKHF--FYFPVIH 89 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC-ChHHHHHhcCC--cccCEEE
Confidence 557888889999877555443322 23445555543 23332 2333 4589988
No 262
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=20.67 E-value=2.2e+02 Score=17.46 Aligned_cols=53 Identities=9% Similarity=-0.117 Sum_probs=31.0
Q ss_pred ceEEecccCChhhHHHHHHHHh----c--CCCcceeecCCCCCchhhhhhCCCCCccceEe
Q 027726 4 NVVLLGFWPSSFAMRVKIALAE----K--GIKYESKEENLFDKSPLLLEMNPVDKKIPVLI 58 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~----~--gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~ 58 (219)
-+.+|+.+.|+.|+...-.+.. . +-.+....++... ...+.+.-.. ..+|++.
T Consensus 18 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~i-~~~Pt~~ 76 (101)
T cd02961 18 VLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA-NNDLCSEYGV-RGYPTIK 76 (101)
T ss_pred EEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc-hHHHHHhCCC-CCCCEEE
Confidence 3667888889999886665543 2 2334455555443 3344333232 4689887
No 263
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=20.56 E-value=2.6e+02 Score=18.89 Aligned_cols=60 Identities=23% Similarity=0.227 Sum_probs=34.8
Q ss_pred eEEecccC--ChhhHHHHHHHHhcCCCc----ceeecCCCCCchhhhhhCCCCCccceEe--eCCeeeeh
Q 027726 5 VVLLGFWP--SSFAMRVKIALAEKGIKY----ESKEENLFDKSPLLLEMNPVDKKIPVLI--HDGKPICE 66 (219)
Q Consensus 5 ~~L~~~~~--s~~~~~v~~~l~~~gi~~----~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~i~e 66 (219)
+..|+..+ ||-|..+.-.+...--.| ....++..+.+ ++....-- ..+|+++ .+|..+..
T Consensus 31 v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~-~la~~f~V-~sIPTli~fkdGk~v~~ 98 (111)
T cd02965 31 VLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ-ALAARFGV-LRTPALLFFRDGRYVGV 98 (111)
T ss_pred EEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH-HHHHHcCC-CcCCEEEEEECCEEEEE
Confidence 55666664 999988776654433333 33345555433 54433333 5699999 47776543
No 264
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.53 E-value=2.6e+02 Score=18.34 Aligned_cols=44 Identities=7% Similarity=0.096 Sum_probs=28.2
Q ss_pred HhcCCCcceeecCCCCCc-----hhhhh-h-CCCCCccceEeeCCeeeehhH
Q 027726 24 AEKGIKYESKEENLFDKS-----PLLLE-M-NPVDKKIPVLIHDGKPICESL 68 (219)
Q Consensus 24 ~~~gi~~~~~~v~~~~~~-----~~~~~-~-~p~~~~vP~L~~~g~~i~es~ 68 (219)
.+-|.||+...+|..+++ .++.. + +-- --.|+++.+|.++.|-.
T Consensus 39 Kyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~de-y~YPlivvedeiVaeGn 89 (106)
T COG4837 39 KYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDE-YFYPLIVVEDEIVAEGN 89 (106)
T ss_pred cCCCCCcEEEEEEcCCCccHHHHHHHHHHHhccc-ccceEEEEcceEeecCC
Confidence 356889999999876432 22321 1 222 25799998888888754
No 265
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=20.14 E-value=84 Score=17.41 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=18.1
Q ss_pred chHHHHHHHHhcccchhccCCChh
Q 027726 180 PKLIAWAKRCSQKESVSASLADPH 203 (219)
Q Consensus 180 p~l~~~~~~~~~~~~~~~~~~~~~ 203 (219)
..+.++++++...|.++.-+..-.
T Consensus 4 ~~l~~Fl~~~~~d~~l~~~l~~~~ 27 (49)
T PF07862_consen 4 ESLKAFLEKVKSDPELREQLKACQ 27 (49)
T ss_pred HHHHHHHHHHhcCHHHHHHHHhcC
Confidence 457889999999999888654433
Done!