Query 027727
Match_columns 219
No_of_seqs 112 out of 1220
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 14:16:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027727.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027727hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0406 Glutathione S-transfer 100.0 6.8E-41 1.5E-45 251.6 21.6 214 3-216 8-226 (231)
2 PRK09481 sspA stringent starva 100.0 1.4E-39 3E-44 249.5 20.5 196 3-204 9-205 (211)
3 PLN02473 glutathione S-transfe 100.0 4.2E-36 9.2E-41 230.7 17.8 194 4-200 2-210 (214)
4 PRK15113 glutathione S-transfe 100.0 6.8E-36 1.5E-40 229.5 17.7 194 1-204 1-211 (214)
5 PRK10542 glutathionine S-trans 100.0 3.3E-35 7.2E-40 223.7 15.9 189 5-201 1-197 (201)
6 PRK13972 GSH-dependent disulfi 100.0 6.5E-35 1.4E-39 224.3 17.5 188 5-202 2-206 (215)
7 PLN02395 glutathione S-transfe 100.0 1.4E-34 3.1E-39 222.4 18.6 195 1-201 1-210 (215)
8 COG0625 Gst Glutathione S-tran 100.0 3.3E-34 7.1E-39 219.8 18.2 185 5-196 1-199 (211)
9 TIGR01262 maiA maleylacetoacet 100.0 4.6E-34 1E-38 218.8 17.9 190 6-202 1-205 (210)
10 PRK10357 putative glutathione 100.0 7.1E-34 1.5E-38 216.5 18.2 192 5-201 1-200 (202)
11 TIGR00862 O-ClC intracellular 100.0 3.1E-33 6.7E-38 215.3 21.4 196 10-214 16-233 (236)
12 KOG0868 Glutathione S-transfer 100.0 7.7E-34 1.7E-38 201.4 15.1 194 2-202 3-208 (217)
13 PRK11752 putative S-transferas 100.0 1.3E-32 2.9E-37 217.0 18.1 195 3-202 43-259 (264)
14 PLN02378 glutathione S-transfe 100.0 4.7E-32 1E-36 207.9 18.9 185 10-206 17-204 (213)
15 PLN02817 glutathione dehydroge 100.0 1.2E-31 2.6E-36 210.7 19.7 187 11-209 71-259 (265)
16 KOG0867 Glutathione S-transfer 100.0 1.2E-31 2.5E-36 206.7 18.0 198 4-204 2-212 (226)
17 PTZ00057 glutathione s-transfe 100.0 1.2E-31 2.7E-36 204.5 16.1 189 1-202 1-200 (205)
18 PRK10387 glutaredoxin 2; Provi 100.0 1.2E-30 2.6E-35 199.9 14.2 179 5-196 1-208 (210)
19 TIGR02182 GRXB Glutaredoxin, G 100.0 2.8E-28 6E-33 186.5 15.1 176 6-195 1-206 (209)
20 KOG1695 Glutathione S-transfer 99.9 2.9E-26 6.3E-31 171.6 14.9 194 1-203 1-202 (206)
21 KOG4420 Uncharacterized conser 99.9 8.9E-26 1.9E-30 169.4 12.4 208 4-213 26-299 (325)
22 KOG1422 Intracellular Cl- chan 99.9 3.6E-23 7.9E-28 151.2 15.5 195 11-214 19-218 (221)
23 PLN02907 glutamate-tRNA ligase 99.9 1.6E-23 3.5E-28 183.3 15.5 158 1-194 1-159 (722)
24 PF13417 GST_N_3: Glutathione 99.8 3.4E-20 7.3E-25 118.7 8.1 72 7-79 1-72 (75)
25 cd03052 GST_N_GDAP1 GST_N fami 99.8 1.1E-19 2.3E-24 115.6 7.9 70 5-75 1-73 (73)
26 cd03061 GST_N_CLIC GST_N famil 99.8 1.9E-19 4.2E-24 117.8 8.4 68 11-79 20-87 (91)
27 cd03059 GST_N_SspA GST_N famil 99.8 2.5E-19 5.4E-24 114.1 8.7 73 5-78 1-73 (73)
28 cd03058 GST_N_Tau GST_N family 99.8 3.9E-19 8.6E-24 113.5 8.8 73 5-78 1-74 (74)
29 cd03045 GST_N_Delta_Epsilon GS 99.8 1.3E-18 2.9E-23 111.0 8.3 71 5-76 1-74 (74)
30 cd03041 GST_N_2GST_N GST_N fam 99.8 1.1E-18 2.3E-23 112.3 7.7 73 5-78 2-77 (77)
31 cd03060 GST_N_Omega_like GST_N 99.8 1.6E-18 3.4E-23 109.8 8.1 69 5-74 1-70 (71)
32 cd03053 GST_N_Phi GST_N family 99.8 2.4E-18 5.2E-23 110.4 8.5 71 5-76 2-75 (76)
33 cd03076 GST_N_Pi GST_N family, 99.8 1.1E-18 2.4E-23 111.1 6.6 71 5-76 2-72 (73)
34 cd03050 GST_N_Theta GST_N fami 99.8 3.3E-18 7.2E-23 109.8 8.7 73 5-78 1-76 (76)
35 KOG3029 Glutathione S-transfer 99.8 1.5E-17 3.4E-22 126.7 12.3 182 4-191 90-354 (370)
36 cd03055 GST_N_Omega GST_N fami 99.8 4.5E-18 9.9E-23 112.4 8.3 73 2-75 16-89 (89)
37 cd03044 GST_N_EF1Bgamma GST_N 99.7 6.4E-18 1.4E-22 108.1 7.8 70 6-76 2-74 (75)
38 cd03048 GST_N_Ure2p_like GST_N 99.7 1.1E-17 2.4E-22 108.7 8.9 73 5-79 2-80 (81)
39 cd03049 GST_N_3 GST_N family, 99.7 6.8E-18 1.5E-22 107.5 7.2 70 5-75 1-73 (73)
40 cd03056 GST_N_4 GST_N family, 99.7 9.3E-18 2E-22 106.8 7.9 70 5-75 1-73 (73)
41 cd03185 GST_C_Tau GST_C family 99.7 2.2E-17 4.7E-22 116.3 10.5 122 90-211 2-125 (126)
42 cd03039 GST_N_Sigma_like GST_N 99.7 5.8E-18 1.3E-22 107.5 6.5 71 5-76 1-72 (72)
43 cd03047 GST_N_2 GST_N family, 99.7 1.3E-17 2.7E-22 106.2 7.9 70 5-75 1-73 (73)
44 KOG4244 Failed axon connection 99.7 1.2E-16 2.7E-21 121.1 13.6 175 5-191 46-272 (281)
45 cd03046 GST_N_GTT1_like GST_N 99.7 2.6E-17 5.7E-22 105.5 8.7 73 5-79 1-76 (76)
46 cd03037 GST_N_GRX2 GST_N famil 99.7 2.4E-17 5.1E-22 104.4 7.5 70 5-76 1-71 (71)
47 cd03051 GST_N_GTT2_like GST_N 99.7 2.1E-17 4.6E-22 105.3 7.2 70 5-75 1-74 (74)
48 cd03057 GST_N_Beta GST_N famil 99.7 4E-17 8.6E-22 105.0 8.5 73 5-79 1-77 (77)
49 cd03042 GST_N_Zeta GST_N famil 99.7 3.5E-17 7.5E-22 104.1 7.8 70 5-75 1-73 (73)
50 COG2999 GrxB Glutaredoxin 2 [P 99.7 1.2E-16 2.5E-21 114.0 10.3 179 5-196 1-208 (215)
51 PF13409 GST_N_2: Glutathione 99.7 5.9E-17 1.3E-21 102.1 7.1 65 12-77 1-70 (70)
52 cd03040 GST_N_mPGES2 GST_N fam 99.7 5.4E-17 1.2E-21 104.4 7.1 72 4-78 1-76 (77)
53 cd03077 GST_N_Alpha GST_N fami 99.7 1.3E-16 2.7E-21 103.1 8.1 72 4-79 1-77 (79)
54 cd03075 GST_N_Mu GST_N family, 99.7 9.5E-17 2.1E-21 104.3 7.6 73 5-78 1-82 (82)
55 cd03190 GST_C_ECM4_like GST_C 99.7 2.3E-16 4.9E-21 113.4 9.7 125 90-214 3-131 (142)
56 cd03186 GST_C_SspA GST_N famil 99.7 2.9E-16 6.2E-21 107.4 9.3 105 90-198 2-106 (107)
57 cd03080 GST_N_Metaxin_like GST 99.7 2.3E-16 5E-21 100.9 7.9 67 5-79 2-75 (75)
58 COG0435 ECM4 Predicted glutath 99.7 9.9E-16 2.1E-20 116.7 11.2 196 3-201 50-286 (324)
59 cd03038 GST_N_etherase_LigE GS 99.7 4.3E-16 9.4E-21 101.9 7.8 67 11-79 14-84 (84)
60 PF02798 GST_N: Glutathione S- 99.7 5.8E-16 1.3E-20 99.2 8.0 70 5-76 3-76 (76)
61 cd03196 GST_C_5 GST_C family, 99.6 1.1E-15 2.4E-20 105.9 8.7 109 88-198 3-114 (115)
62 cd03184 GST_C_Omega GST_C fami 99.6 1.2E-15 2.7E-20 107.1 8.6 118 91-210 2-122 (124)
63 cd03043 GST_N_1 GST_N family, 99.6 1.7E-15 3.6E-20 96.3 8.0 66 9-75 6-73 (73)
64 cd03188 GST_C_Beta GST_C famil 99.6 2.6E-15 5.7E-20 103.6 8.8 104 91-199 2-114 (114)
65 cd00570 GST_N_family Glutathio 99.6 3.1E-15 6.7E-20 93.8 7.8 70 5-75 1-71 (71)
66 cd03054 GST_N_Metaxin GST_N fa 99.6 7.4E-15 1.6E-19 93.1 7.2 64 6-77 2-72 (72)
67 cd03189 GST_C_GTT1_like GST_C 99.6 1.9E-14 4.1E-19 100.3 9.1 103 86-193 2-119 (119)
68 cd03198 GST_C_CLIC GST_C famil 99.6 1.5E-14 3.2E-19 101.8 8.6 106 104-209 9-132 (134)
69 cd03182 GST_C_GTT2_like GST_C 99.6 2.7E-14 5.9E-19 99.1 9.7 104 88-195 1-117 (117)
70 cd03178 GST_C_Ure2p_like GST_C 99.6 1.2E-14 2.7E-19 100.2 7.9 105 91-199 1-112 (113)
71 cd03191 GST_C_Zeta GST_C famil 99.6 1.5E-14 3.2E-19 101.2 8.2 108 90-202 2-120 (121)
72 cd03203 GST_C_Lambda GST_C fam 99.6 5.4E-14 1.2E-18 98.1 10.7 114 88-209 1-119 (120)
73 cd03187 GST_C_Phi GST_C family 99.6 2.7E-14 5.8E-19 99.2 8.7 106 91-199 2-118 (118)
74 KOG2903 Predicted glutathione 99.5 8.6E-14 1.9E-18 105.3 10.1 194 3-200 36-287 (319)
75 cd03201 GST_C_DHAR GST_C famil 99.5 7.9E-14 1.7E-18 97.3 9.3 102 106-208 14-117 (121)
76 cd03177 GST_C_Delta_Epsilon GS 99.5 5.8E-14 1.2E-18 97.7 6.6 105 91-199 2-110 (118)
77 cd03180 GST_C_2 GST_C family, 99.5 2E-13 4.4E-18 93.6 9.1 100 91-195 2-110 (110)
78 cd03209 GST_C_Mu GST_C family, 99.5 1.6E-13 3.4E-18 96.0 8.4 108 91-203 2-111 (121)
79 cd03181 GST_C_EFB1gamma GST_C 99.5 9.6E-14 2.1E-18 97.2 7.1 109 92-202 2-117 (123)
80 cd03207 GST_C_8 GST_C family, 99.5 6.8E-14 1.5E-18 94.9 5.0 98 98-201 4-102 (103)
81 cd03208 GST_C_Alpha GST_C fami 99.5 4.2E-13 9.1E-18 95.8 9.2 123 91-217 3-136 (137)
82 cd03183 GST_C_Theta GST_C fami 99.5 2E-13 4.3E-18 96.1 7.2 104 92-199 2-120 (126)
83 cd03200 GST_C_JTV1 GST_C famil 99.5 3.5E-13 7.6E-18 90.1 7.8 95 71-191 1-95 (96)
84 cd03210 GST_C_Pi GST_C family, 99.4 2.9E-13 6.4E-18 95.2 7.5 108 91-203 3-114 (126)
85 cd03195 GST_C_4 GST_C family, 99.4 5E-13 1.1E-17 92.4 7.1 103 90-200 2-112 (114)
86 cd03206 GST_C_7 GST_C family, 99.4 5.2E-13 1.1E-17 90.1 5.7 95 96-195 2-100 (100)
87 PF00043 GST_C: Glutathione S- 99.4 8.2E-13 1.8E-17 88.2 6.6 72 118-193 23-95 (95)
88 cd03179 GST_C_1 GST_C family, 99.4 3.2E-12 6.9E-17 86.8 7.5 95 91-190 2-105 (105)
89 cd03079 GST_N_Metaxin2 GST_N f 99.3 4.8E-12 1E-16 79.6 7.0 59 12-77 16-74 (74)
90 cd03204 GST_C_GDAP1 GST_C fami 99.3 3.6E-12 7.9E-17 87.0 6.9 74 118-195 24-111 (111)
91 PF13410 GST_C_2: Glutathione 99.3 3.7E-12 7.9E-17 79.9 6.3 68 119-188 2-69 (69)
92 KOG3027 Mitochondrial outer me 99.3 1.1E-10 2.3E-15 85.8 12.5 170 13-192 34-248 (257)
93 PF14497 GST_C_3: Glutathione 99.2 1.1E-11 2.3E-16 83.5 5.1 95 89-191 3-99 (99)
94 cd00299 GST_C_family Glutathio 99.2 2.5E-11 5.4E-16 81.3 6.8 92 96-189 2-100 (100)
95 cd03194 GST_C_3 GST_C family, 99.2 5E-11 1.1E-15 82.3 8.0 72 121-200 39-113 (114)
96 TIGR02190 GlrX-dom Glutaredoxi 99.2 7.2E-11 1.6E-15 76.0 6.9 72 3-75 8-79 (79)
97 cd03192 GST_C_Sigma_like GST_C 99.2 7.3E-11 1.6E-15 80.0 6.7 95 91-189 2-104 (104)
98 cd03202 GST_C_etherase_LigE GS 99.2 8.1E-11 1.7E-15 82.5 6.5 68 121-191 56-123 (124)
99 KOG3028 Translocase of outer m 99.2 2.8E-09 6.2E-14 83.4 15.1 169 13-191 17-233 (313)
100 PRK10638 glutaredoxin 3; Provi 99.1 2.9E-10 6.3E-15 73.9 7.4 73 1-75 1-74 (83)
101 cd03193 GST_C_Metaxin GST_C fa 99.1 2.7E-10 5.9E-15 74.9 6.7 68 122-190 18-88 (88)
102 cd03078 GST_N_Metaxin1_like GS 99.1 7.3E-10 1.6E-14 70.0 7.0 57 13-77 16-72 (73)
103 cd03029 GRX_hybridPRX5 Glutare 99.0 1.4E-09 3.1E-14 68.6 7.4 71 4-75 2-72 (72)
104 cd03205 GST_C_6 GST_C family, 98.9 5.1E-09 1.1E-13 70.2 6.5 67 118-189 32-98 (98)
105 cd03197 GST_C_mPGES2 GST_C fam 98.9 5.5E-09 1.2E-13 74.4 6.4 65 123-191 79-145 (149)
106 cd03211 GST_C_Metaxin2 GST_C f 98.8 5.3E-09 1.1E-13 73.5 4.4 71 120-190 54-126 (126)
107 cd03027 GRX_DEP Glutaredoxin ( 98.8 2E-08 4.3E-13 63.5 6.5 68 4-72 2-70 (73)
108 PRK10329 glutaredoxin-like pro 98.8 2.3E-08 4.9E-13 64.5 6.1 62 4-66 2-63 (81)
109 TIGR02196 GlrX_YruB Glutaredox 98.7 3.5E-08 7.7E-13 62.1 6.3 70 4-74 1-73 (74)
110 PF14834 GST_C_4: Glutathione 98.7 8.7E-08 1.9E-12 64.4 7.8 105 88-200 1-113 (117)
111 cd03212 GST_C_Metaxin1_3 GST_C 98.7 1.7E-08 3.7E-13 71.8 4.8 72 119-191 60-134 (137)
112 cd02066 GRX_family Glutaredoxi 98.7 5.8E-08 1.3E-12 60.7 6.6 69 4-73 1-70 (72)
113 cd02976 NrdH NrdH-redoxin (Nrd 98.7 4E-08 8.6E-13 61.7 5.8 63 4-67 1-64 (73)
114 cd03418 GRX_GRXb_1_3_like Glut 98.6 2E-07 4.2E-12 59.2 6.7 70 4-74 1-72 (75)
115 TIGR02200 GlrX_actino Glutared 98.6 1.3E-07 2.9E-12 60.1 5.4 64 4-68 1-67 (77)
116 COG0695 GrxC Glutaredoxin and 98.5 6.9E-07 1.5E-11 57.4 7.2 69 4-73 2-73 (80)
117 TIGR02181 GRX_bact Glutaredoxi 98.5 7.1E-07 1.5E-11 57.2 6.5 71 5-76 1-72 (79)
118 TIGR02194 GlrX_NrdH Glutaredox 98.5 4.7E-07 1E-11 57.0 5.3 57 5-62 1-57 (72)
119 PF00462 Glutaredoxin: Glutare 98.4 5E-07 1.1E-11 54.7 3.6 59 5-64 1-60 (60)
120 TIGR02189 GlrX-like_plant Glut 98.3 4.8E-06 1E-10 55.8 8.2 70 3-73 8-81 (99)
121 cd03419 GRX_GRXh_1_2_like Glut 98.3 5.3E-06 1.1E-10 53.4 7.6 72 4-76 1-76 (82)
122 PRK11200 grxA glutaredoxin 1; 98.3 5.6E-06 1.2E-10 53.9 7.4 75 4-79 2-84 (85)
123 PHA03050 glutaredoxin; Provisi 98.2 7.8E-06 1.7E-10 55.6 7.8 69 3-72 13-88 (108)
124 TIGR02183 GRXA Glutaredoxin, G 98.2 1.2E-05 2.6E-10 52.4 7.2 74 5-79 2-83 (86)
125 TIGR02180 GRX_euk Glutaredoxin 98.1 4E-05 8.6E-10 49.4 8.0 71 5-76 1-77 (84)
126 TIGR00365 monothiol glutaredox 98.0 3.1E-05 6.7E-10 51.7 7.0 71 3-74 12-88 (97)
127 PF10568 Tom37: Outer mitochon 98.0 2.7E-05 5.8E-10 48.8 6.1 55 12-74 13-71 (72)
128 cd03028 GRX_PICOT_like Glutare 98.0 4E-05 8.6E-10 50.4 7.0 71 3-74 8-84 (90)
129 PF04399 Glutaredoxin2_C: Glut 97.6 0.00013 2.8E-09 51.2 5.3 68 121-195 57-124 (132)
130 KOG1147 Glutamyl-tRNA syntheta 97.6 9.9E-06 2.2E-10 68.1 -0.4 125 54-199 38-162 (712)
131 PRK12759 bifunctional gluaredo 97.6 0.0003 6.5E-09 59.3 7.6 70 1-72 1-79 (410)
132 COG4545 Glutaredoxin-related p 97.5 0.00044 9.5E-09 42.7 5.7 63 1-65 1-77 (85)
133 cd03199 GST_C_GRX2 GST_C famil 97.5 0.00033 7.1E-09 48.8 5.5 68 121-195 58-125 (128)
134 PRK10824 glutaredoxin-4; Provi 97.5 0.00071 1.5E-08 46.4 6.9 71 3-74 15-91 (115)
135 KOG1752 Glutaredoxin and relat 97.3 0.0019 4.1E-08 43.5 7.3 71 3-74 14-88 (104)
136 cd03031 GRX_GRX_like Glutaredo 97.3 0.0012 2.7E-08 47.3 6.8 70 4-74 1-81 (147)
137 cd02973 TRX_GRX_like Thioredox 97.0 0.0034 7.3E-08 38.5 6.2 58 4-65 2-64 (67)
138 PTZ00062 glutaredoxin; Provisi 96.7 0.008 1.7E-07 45.6 6.8 71 3-74 113-189 (204)
139 cd03036 ArsC_like Arsenate Red 96.6 0.0024 5.1E-08 43.7 3.4 34 5-38 1-34 (111)
140 cd02977 ArsC_family Arsenate R 96.6 0.0031 6.8E-08 42.6 3.7 33 5-37 1-33 (105)
141 PRK01655 spxA transcriptional 96.4 0.0053 1.1E-07 43.3 4.0 33 5-37 2-34 (131)
142 cd03032 ArsC_Spx Arsenate Redu 96.2 0.0088 1.9E-07 41.1 4.4 32 5-36 2-33 (115)
143 TIGR01617 arsC_related transcr 96.1 0.0074 1.6E-07 41.6 3.7 32 5-36 1-32 (117)
144 PRK12559 transcriptional regul 95.8 0.018 3.8E-07 40.6 4.6 33 5-37 2-34 (131)
145 PRK13344 spxA transcriptional 95.8 0.02 4.3E-07 40.4 4.7 33 5-37 2-34 (132)
146 PRK10026 arsenate reductase; P 95.8 0.016 3.4E-07 41.3 3.9 35 1-36 1-35 (141)
147 PF05768 DUF836: Glutaredoxin- 95.6 0.072 1.6E-06 34.1 6.4 55 4-61 1-57 (81)
148 cd03035 ArsC_Yffb Arsenate Red 95.6 0.026 5.7E-07 38.1 4.4 33 5-37 1-33 (105)
149 cd03033 ArsC_15kD Arsenate Red 95.4 0.023 5E-07 38.9 3.8 32 5-36 2-33 (113)
150 TIGR00412 redox_disulf_2 small 95.1 0.13 2.9E-06 32.3 6.3 55 5-65 3-61 (76)
151 COG1393 ArsC Arsenate reductas 94.9 0.049 1.1E-06 37.5 4.0 33 4-36 2-34 (117)
152 TIGR01616 nitro_assoc nitrogen 94.8 0.051 1.1E-06 38.0 4.0 33 4-36 2-34 (126)
153 cd03030 GRX_SH3BGR Glutaredoxi 94.6 0.19 4.2E-06 33.0 6.3 67 5-72 2-79 (92)
154 TIGR00411 redox_disulf_1 small 94.5 0.22 4.9E-06 31.3 6.4 57 4-62 2-62 (82)
155 cd03026 AhpF_NTD_C TRX-GRX-lik 94.4 0.22 4.9E-06 32.4 6.1 58 4-65 15-77 (89)
156 PRK10853 putative reductase; P 94.3 0.075 1.6E-06 36.7 4.0 32 5-36 2-33 (118)
157 cd01659 TRX_superfamily Thiore 94.1 0.12 2.6E-06 29.9 4.3 54 5-59 1-59 (69)
158 cd03034 ArsC_ArsC Arsenate Red 93.5 0.11 2.4E-06 35.5 3.6 32 5-36 1-32 (112)
159 TIGR00014 arsC arsenate reduct 93.3 0.12 2.6E-06 35.4 3.6 32 5-36 1-32 (114)
160 COG0278 Glutaredoxin-related p 93.0 0.68 1.5E-05 30.7 6.4 69 3-75 15-93 (105)
161 PHA02125 thioredoxin-like prot 92.5 0.56 1.2E-05 29.3 5.6 53 5-62 2-54 (75)
162 PF04908 SH3BGR: SH3-binding, 92.0 0.5 1.1E-05 31.5 4.9 67 5-72 3-85 (99)
163 PF11287 DUF3088: Protein of u 91.3 0.8 1.7E-05 31.0 5.4 68 12-79 23-108 (112)
164 PF13192 Thioredoxin_3: Thiore 90.8 1 2.3E-05 28.1 5.5 57 4-66 2-62 (76)
165 PF11801 Tom37_C: Tom37 C-term 85.6 1.1 2.4E-05 33.0 3.4 38 128-165 113-154 (168)
166 PF03960 ArsC: ArsC family; I 83.6 1.3 2.7E-05 30.0 2.8 29 8-36 1-29 (110)
167 TIGR01295 PedC_BrcD bacterioci 80.2 8.3 0.00018 26.6 6.0 58 5-63 27-102 (122)
168 KOG1668 Elongation factor 1 be 79.7 1.6 3.4E-05 33.6 2.3 59 129-196 10-68 (231)
169 TIGR03143 AhpF_homolog putativ 79.4 6 0.00013 35.0 6.2 57 4-64 479-540 (555)
170 PRK15317 alkyl hydroperoxide r 78.4 2.9 6.2E-05 36.6 3.9 71 4-76 119-196 (517)
171 KOG0911 Glutaredoxin-related p 76.7 10 0.00023 29.1 5.9 70 4-74 140-215 (227)
172 TIGR03140 AhpF alkyl hydropero 76.5 3.3 7.2E-05 36.2 3.8 61 4-66 120-183 (515)
173 PF00085 Thioredoxin: Thioredo 76.4 18 0.00038 23.3 8.5 69 5-76 21-102 (103)
174 cd02949 TRX_NTR TRX domain, no 73.7 19 0.00042 23.3 6.2 58 5-64 17-80 (97)
175 cd02947 TRX_family TRX family; 72.2 20 0.00044 22.1 6.4 55 5-63 14-75 (93)
176 cd02975 PfPDO_like_N Pyrococcu 71.6 17 0.00036 24.6 5.6 52 5-58 25-80 (113)
177 PF09635 MetRS-N: MetRS-N bind 67.1 3.6 7.8E-05 28.4 1.4 27 53-79 35-63 (122)
178 cd02953 DsbDgamma DsbD gamma f 66.7 17 0.00037 23.8 4.7 52 5-58 15-77 (104)
179 KOG3425 Uncharacterized conser 65.7 25 0.00055 24.3 5.3 66 10-76 42-121 (128)
180 cd02989 Phd_like_TxnDC9 Phosdu 64.2 40 0.00087 22.7 6.3 60 5-66 26-90 (113)
181 cd02951 SoxW SoxW family; SoxW 63.4 27 0.00059 23.7 5.4 16 5-20 18-33 (125)
182 PRK09381 trxA thioredoxin; Pro 61.1 44 0.00096 21.9 6.3 58 5-64 25-88 (109)
183 cd02984 TRX_PICOT TRX domain, 60.1 42 0.00091 21.3 6.5 57 5-64 18-81 (97)
184 PF01323 DSBA: DSBA-like thior 58.5 15 0.00033 27.0 3.7 35 4-38 1-40 (193)
185 PF04134 DUF393: Protein of un 57.6 45 0.00098 22.3 5.6 68 7-76 1-76 (114)
186 PHA03075 glutaredoxin-like pro 55.5 22 0.00048 24.3 3.6 68 1-77 1-69 (123)
187 cd02963 TRX_DnaJ TRX domain, D 54.8 61 0.0013 21.6 6.1 57 5-63 28-91 (111)
188 PTZ00051 thioredoxin; Provisio 51.5 61 0.0013 20.6 6.1 57 5-63 22-83 (98)
189 TIGR02187 GlrX_arch Glutaredox 50.4 46 0.00099 25.3 5.2 53 5-59 137-192 (215)
190 PF09849 DUF2076: Uncharacteri 49.5 93 0.002 24.5 6.7 67 66-139 5-71 (247)
191 TIGR02681 phage_pRha phage reg 47.6 19 0.00042 24.3 2.4 26 54-79 2-28 (108)
192 PHA02278 thioredoxin-like prot 46.8 84 0.0018 20.8 6.9 59 5-64 18-85 (103)
193 cd02959 ERp19 Endoplasmic reti 46.2 83 0.0018 21.3 5.5 60 5-65 23-91 (117)
194 COG3019 Predicted metal-bindin 45.7 36 0.00077 24.2 3.5 76 3-78 26-104 (149)
195 cd02962 TMX2 TMX2 family; comp 44.7 1.1E+02 0.0023 22.1 6.0 60 5-65 51-122 (152)
196 cd02956 ybbN ybbN protein fami 44.5 70 0.0015 20.3 4.8 57 5-63 16-78 (96)
197 cd02948 TRX_NDPK TRX domain, T 42.6 94 0.002 20.2 7.6 57 5-64 21-84 (102)
198 cd03021 DsbA_GSTK DsbA family, 42.3 36 0.00078 25.7 3.5 34 4-37 2-39 (209)
199 cd02957 Phd_like Phosducin (Ph 42.2 89 0.0019 20.8 5.2 59 5-66 28-91 (113)
200 PRK10996 thioredoxin 2; Provis 41.3 1.2E+02 0.0027 21.2 6.5 58 5-64 56-119 (139)
201 cd03020 DsbA_DsbC_DsbG DsbA fa 38.6 38 0.00082 25.3 3.1 22 4-25 80-101 (197)
202 cd02993 PDI_a_APS_reductase PD 38.6 1.1E+02 0.0025 20.1 5.5 53 5-58 25-83 (109)
203 PRK11657 dsbG disulfide isomer 38.2 40 0.00087 26.5 3.3 21 4-24 120-140 (251)
204 TIGR02187 GlrX_arch Glutaredox 38.1 1.3E+02 0.0028 22.8 6.0 57 5-63 23-89 (215)
205 cd02955 SSP411 TRX domain, SSP 37.0 1.4E+02 0.0031 20.6 5.9 60 6-67 20-97 (124)
206 PRK10877 protein disulfide iso 36.9 47 0.001 25.8 3.4 22 4-25 110-131 (232)
207 cd02997 PDI_a_PDIR PDIa family 35.8 1.2E+02 0.0026 19.4 6.3 58 5-63 21-87 (104)
208 PF06110 DUF953: Eukaryotic pr 35.3 40 0.00088 23.2 2.5 59 10-69 35-107 (119)
209 PF13281 DUF4071: Domain of un 34.8 2.8E+02 0.0061 23.4 10.3 56 124-195 118-173 (374)
210 TIGR01068 thioredoxin thioredo 34.0 1.2E+02 0.0026 19.0 7.8 57 5-63 18-80 (101)
211 PF10673 DUF2487: Protein of u 33.6 57 0.0012 23.3 3.1 49 99-147 8-56 (142)
212 cd02954 DIM1 Dim1 family; Dim1 33.3 1.5E+02 0.0032 20.3 5.0 55 7-64 20-81 (114)
213 cd03003 PDI_a_ERdj5_N PDIa fam 31.9 1.4E+02 0.0031 19.1 5.4 55 5-62 22-83 (101)
214 cd02985 TRX_CDSP32 TRX family, 31.3 1.5E+02 0.0033 19.3 5.6 59 5-64 19-84 (103)
215 PF13098 Thioredoxin_2: Thiore 30.7 49 0.0011 21.7 2.4 20 5-24 9-28 (112)
216 cd02972 DsbA_family DsbA famil 30.4 57 0.0012 20.2 2.6 22 5-26 1-22 (98)
217 COG5494 Predicted thioredoxin/ 29.9 1.8E+02 0.0039 22.4 5.3 59 4-64 12-70 (265)
218 cd03022 DsbA_HCCA_Iso DsbA fam 29.2 66 0.0014 23.5 3.0 33 5-37 1-37 (192)
219 TIGR01764 excise DNA binding d 28.8 91 0.002 16.6 3.0 24 52-75 25-48 (49)
220 cd04911 ACT_AKiii-YclM-BS_1 AC 28.6 74 0.0016 20.0 2.7 25 13-37 15-39 (76)
221 PF04564 U-box: U-box domain; 28.5 1.5E+02 0.0032 18.2 4.2 46 53-100 15-69 (73)
222 cd02999 PDI_a_ERp44_like PDIa 28.2 1.7E+02 0.0038 19.0 5.6 54 5-61 22-82 (100)
223 cd02950 TxlA TRX-like protein 27.6 2.2E+02 0.0048 20.0 6.2 59 5-64 24-90 (142)
224 cd02987 Phd_like_Phd Phosducin 27.0 2.6E+02 0.0056 20.6 6.7 58 6-66 88-150 (175)
225 PTZ00443 Thioredoxin domain-co 26.5 3.1E+02 0.0066 21.2 6.7 73 5-79 56-140 (224)
226 PF09314 DUF1972: Domain of un 26.5 56 0.0012 24.5 2.2 27 60-86 154-181 (185)
227 PF13728 TraF: F plasmid trans 26.4 1E+02 0.0022 23.7 3.6 52 5-58 124-188 (215)
228 cd03024 DsbA_FrnE DsbA family, 26.2 75 0.0016 23.5 2.9 32 5-36 1-40 (201)
229 PF11823 DUF3343: Protein of u 26.1 82 0.0018 19.3 2.6 30 7-36 5-34 (73)
230 cd02952 TRP14_like Human TRX-r 26.0 2.2E+02 0.0048 19.5 6.1 55 11-66 38-105 (119)
231 PRK09266 hypothetical protein; 25.7 1.4E+02 0.0031 23.4 4.6 58 22-79 200-259 (266)
232 PF04659 Arch_fla_DE: Archaeal 25.5 2.1E+02 0.0045 19.0 4.5 72 85-156 11-86 (99)
233 cd02994 PDI_a_TMX PDIa family, 25.3 1.9E+02 0.0041 18.4 5.6 56 5-62 20-82 (101)
234 PRK15371 effector protein YopJ 25.2 1.7E+02 0.0036 23.7 4.7 66 122-190 22-87 (287)
235 PF09413 DUF2007: Domain of un 25.0 68 0.0015 19.1 2.1 31 6-36 2-32 (67)
236 TIGR01126 pdi_dom protein disu 24.7 97 0.0021 19.6 3.0 52 5-58 17-74 (102)
237 PF07511 DUF1525: Protein of u 24.4 89 0.0019 21.4 2.7 25 52-76 82-107 (114)
238 PF15608 PELOTA_1: PELOTA RNA 24.0 1.2E+02 0.0027 20.2 3.2 29 6-34 59-87 (100)
239 COG3150 Predicted esterase [Ge 23.6 1.1E+02 0.0024 22.8 3.1 34 5-38 3-36 (191)
240 PRK03731 aroL shikimate kinase 23.0 1.3E+02 0.0028 21.6 3.6 31 1-31 1-31 (171)
241 cd03025 DsbA_FrnE_like DsbA fa 22.9 1.4E+02 0.0029 21.9 3.8 32 4-35 2-39 (193)
242 PF11417 Inhibitor_G39P: Loade 22.7 2E+02 0.0043 17.8 4.8 37 66-104 5-42 (71)
243 KOG2824 Glutaredoxin-related p 22.3 1.3E+02 0.0029 24.0 3.6 57 15-72 149-210 (281)
244 PF12728 HTH_17: Helix-turn-he 22.2 1.5E+02 0.0033 16.3 3.1 25 52-76 25-49 (51)
245 PRK14531 adenylate kinase; Pro 21.9 1.4E+02 0.003 21.9 3.6 30 1-30 1-30 (183)
246 COG3118 Thioredoxin domain-con 21.8 3.6E+02 0.0078 22.0 5.9 73 5-79 47-131 (304)
247 COG3011 Predicted thiol-disulf 21.4 3.1E+02 0.0067 19.5 7.5 75 3-78 8-87 (137)
248 cd03005 PDI_a_ERp46 PDIa famil 20.9 2.3E+02 0.005 17.8 6.0 56 5-62 20-84 (102)
249 PTZ00102 disulphide isomerase; 20.7 5.4E+02 0.012 22.0 7.6 73 5-79 53-139 (477)
250 TIGR01130 ER_PDI_fam protein d 20.7 5.2E+02 0.011 21.8 7.6 73 5-79 22-110 (462)
251 cd02970 PRX_like2 Peroxiredoxi 20.7 1.3E+02 0.0028 20.7 3.1 50 10-61 33-89 (149)
252 cd02978 KaiB_like KaiB-like fa 20.7 2.3E+02 0.0049 17.6 4.0 53 4-58 3-60 (72)
253 cd03004 PDI_a_ERdj5_C PDIa fam 20.3 1.8E+02 0.0039 18.7 3.6 52 5-58 23-78 (104)
254 KOG2501 Thioredoxin, nucleored 20.3 2.8E+02 0.0061 20.2 4.6 33 6-38 37-77 (157)
255 cd03002 PDI_a_MPD1_like PDI fa 20.3 2.5E+02 0.0055 18.0 6.1 57 5-62 22-85 (109)
256 COG5515 Uncharacterized conser 20.2 82 0.0018 18.8 1.6 22 4-25 2-27 (70)
257 COG5460 Uncharacterized conser 20.1 2.4E+02 0.0053 17.8 5.3 61 69-137 17-78 (82)
No 1
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-41 Score=251.64 Aligned_cols=214 Identities=53% Similarity=0.889 Sum_probs=191.7
Q ss_pred CceEEecccCCchhHHHHHHHHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHHhhcCCCC
Q 027727 3 DEVILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDEVWKDKA 82 (219)
Q Consensus 3 ~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~~~~~~~~ 82 (219)
+.++||+++.|||++|++++|++|||+|+.++.|+.++++++.+.||.+++||||+++|.+|+||..|++||++.+++++
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~~ 87 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSGP 87 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccCCC
Confidence 45999999999999999999999999999999999999999999997679999999999999999999999999999668
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhhcccchhhhhcc-ChHHHHHHHHHHHHHHHHHHcccC-CCCcccCCCcchhhhhhhhh
Q 027727 83 PLLPYDPYQRAQARFWVDFIDKKMYDTSRKTWAT-KGEEQEAAKKEFIEVLKTLGGELG-DKPFFGGDNFGYVDLCLIPY 160 (219)
Q Consensus 83 ~l~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~l~~~l~~le~~L~-~~~~l~G~~~t~aD~~l~~~ 160 (219)
+++|.||.+|++++.|..+++..+.......+.. +++..+...+.+...|..||+.|+ +++|+.|+++++.|+++++.
T Consensus 88 ~iLP~DPy~Ra~arfwa~~id~~~~~~~~~~~~~~~~e~~~~~~~e~~e~l~~lE~el~k~k~~fgG~~~G~vDi~~~p~ 167 (231)
T KOG0406|consen 88 PILPSDPYERAQARFWAEYIDKKVFFVGRFVVAAKGGEEQEAAKEELREALKVLEEELGKGKDFFGGETIGFVDIAIGPS 167 (231)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCHhhhhHHhh
Confidence 9999999999999999999999887777666663 467888889999999999999997 88999999999999999977
Q ss_pred hhhhhhhh-hhcC--ccccccCchHHHHHHHHhcccchhccCCChHHHHHHHHHHHHHH
Q 027727 161 YCWFYSYE-TFGK--FSVEAECPKFIAWVTRCLQRETVAKALPDEKKVFEFVSVLREKI 216 (219)
Q Consensus 161 l~~~~~~~-~~~~--~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (219)
+.+...+. ...+ +.....+|+|.+|.+++.++|.+++++++.+.+.++++.+++..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~P~L~~W~~~~~~~~~V~~~~p~~e~~~e~~~~~~~~~ 226 (231)
T KOG0406|consen 168 FERWLAVLEKFGGVKFIIEEETPKLIKWIKRMKEDEAVKAVLPDSEKVVEFMKKYRQGS 226 (231)
T ss_pred HHHHHHHHHHhcCcccCCCCCCccHHHHHHHHhcChhHHhhcCCHHHHHHHHHHHHHhc
Confidence 66654332 2232 22348999999999999999999999999999999999999873
No 2
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=100.00 E-value=1.4e-39 Score=249.46 Aligned_cols=196 Identities=27% Similarity=0.472 Sum_probs=169.4
Q ss_pred CceEEecccCCchhHHHHHHHHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHHhhcCCCC
Q 027727 3 DEVILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDEVWKDKA 82 (219)
Q Consensus 3 ~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~~~~~~~~ 82 (219)
+.++||+++.||+|++++++|+++|++|+.+.++..+++++|.++||. |+||+|+++|.+|+||.+|++||+++++ +.
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~-g~VPvL~~~g~~l~ES~AIl~YL~~~~~-~~ 86 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPY-QSVPTLVDRELTLYESRIIMEYLDERFP-HP 86 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCC-CCCCEEEECCEEeeCHHHHHHHHHHhCC-CC
Confidence 358999999999999999999999999999999988888999999999 9999999999999999999999999998 67
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhhcccchhhhhccChHHHHHHHHHHHHHHHHHHcccCCCCcccCCCcchhhhhhhhhhh
Q 027727 83 PLLPYDPYQRAQARFWVDFIDKKMYDTSRKTWATKGEEQEAAKKEFIEVLKTLGGELGDKPFFGGDNFGYVDLCLIPYYC 162 (219)
Q Consensus 83 ~l~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~ 162 (219)
.++|.++.++++++.|+.++...+.........+.+...+.....+.+.+..+|++|++++|++|+++|+||+++++.+.
T Consensus 87 ~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~AD~~l~~~~~ 166 (211)
T PRK09481 87 PLMPVYPVARGESRLMMHRIEKDWYSLMNKIVNGSASEADAARKQLREELLAIAPVFGEKPYFMSEEFSLVDCYLAPLLW 166 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCccHHHHHHHHHHH
Confidence 89999999999999999887766544433333333455667778899999999999998999999999999999999987
Q ss_pred hhhhhhhhcCcccc-ccCchHHHHHHHHhcccchhccCCChHH
Q 027727 163 WFYSYETFGKFSVE-AECPKFIAWVTRCLQRETVAKALPDEKK 204 (219)
Q Consensus 163 ~~~~~~~~~~~~~~-~~~p~l~~~~~~~~~~~~~~~~~~~~~~ 204 (219)
++.. .+.++. ..+|+|++|++++.++|++++++...+.
T Consensus 167 ~~~~----~~~~~~~~~~p~l~~w~~~~~~rp~~~~~~~~~~~ 205 (211)
T PRK09481 167 RLPV----LGIELSGPGAKELKGYMTRVFERDSFLASLTEAER 205 (211)
T ss_pred HHHh----cCCCCCCCCChhHHHHHHHHhccHHHHHHcCHHHH
Confidence 7653 234443 5799999999999999999999876544
No 3
>PLN02473 glutathione S-transferase
Probab=100.00 E-value=4.2e-36 Score=230.75 Aligned_cols=194 Identities=22% Similarity=0.304 Sum_probs=160.8
Q ss_pred ceEEecccCCchhHHHHHHHHHhCCCceeEEccCC---CCChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHHhhcCC
Q 027727 4 EVILLDFWASMFGIRVRIALAEKGVKYEYKEQDLF---NKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDEVWKD 80 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~~~~~~ 80 (219)
.|+||+++.||++++++++|.++|++|+.+.++.. +.++++.++||. |+||+|+++|.+|+||.+|++||+++++.
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~ES~aI~~YL~~~~~~ 80 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPF-GQVPAIEDGDLKLFESRAIARYYATKYAD 80 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCC-CCCCeEEECCEEEEehHHHHHHHHHHcCC
Confidence 38999999999999999999999999999998876 478899999999 99999999999999999999999999973
Q ss_pred C-CCCCCCCHHHHHHHHHHHHHhhhhcccchh-----hhhc---c---ChHHHHHHHHHHHHHHHHHHcccCCCCcccCC
Q 027727 81 K-APLLPYDPYQRAQARFWVDFIDKKMYDTSR-----KTWA---T---KGEEQEAAKKEFIEVLKTLGGELGDKPFFGGD 148 (219)
Q Consensus 81 ~-~~l~p~~~~~~a~~~~~~~~~~~~l~~~~~-----~~~~---~---~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~ 148 (219)
. .+++|.++.++++++.|+.+..+.+..... ..+. + .....+....++.+.++.||++|++++|++|+
T Consensus 81 ~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd 160 (214)
T PLN02473 81 QGTDLLGKTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLATNRYLGGD 160 (214)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhccCCcccCC
Confidence 2 368999999999999999988776643221 1111 1 12345566788999999999999888999999
Q ss_pred CcchhhhhhhhhhhhhhhhhhhcCccccccCchHHHHHHHHhcccchhccCC
Q 027727 149 NFGYVDLCLIPYYCWFYSYETFGKFSVEAECPKFIAWVTRCLQRETVAKALP 200 (219)
Q Consensus 149 ~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~ 200 (219)
++|+||+++++.+.++.... ....+..++|+|++|++++.++|+++++..
T Consensus 161 ~~t~ADi~~~~~~~~~~~~~--~~~~~~~~~P~l~~w~~~~~~~p~~~~~~~ 210 (214)
T PLN02473 161 EFTLADLTHMPGMRYIMNET--SLSGLVTSRENLNRWWNEISARPAWKKLME 210 (214)
T ss_pred CCCHHHHHHHHHHHHHHhcc--ccHHHHhcCHHHHHHHHHHhcChhhHHHHH
Confidence 99999999999988754311 111223789999999999999999998764
No 4
>PRK15113 glutathione S-transferase; Provisional
Probab=100.00 E-value=6.8e-36 Score=229.52 Aligned_cols=194 Identities=23% Similarity=0.266 Sum_probs=160.5
Q ss_pred CC-CceEEeccc--CCchhHHHHHHHHHhCCCceeEEccCCC---CChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHH
Q 027727 1 MA-DEVILLDFW--ASMFGIRVRIALAEKGVKYEYKEQDLFN---KSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYI 74 (219)
Q Consensus 1 M~-~~~~L~~~~--~s~~~~~v~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL 74 (219)
|+ .+++||+.+ .||+|++++++|.++||+|+.+.++... ..++|.++||. |+||+|++||.+|+||.+|++||
T Consensus 1 ~~~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~-g~VP~L~~~~~~l~ES~aI~~YL 79 (214)
T PRK15113 1 MSKPAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLT-RRVPTLQHDDFELSESSAIAEYL 79 (214)
T ss_pred CCCCeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCC-CCCCEEEECCEEEecHHHHHHHH
Confidence 66 568999975 6999999999999999999999998763 56899999999 99999999999999999999999
Q ss_pred HhhcCCCCC---CCCCCHHHHHHHHHHHHHhhhhcccchh-----hhhcc--ChHHHHHHHHHHHHHHHHHHcccCC-CC
Q 027727 75 DEVWKDKAP---LLPYDPYQRAQARFWVDFIDKKMYDTSR-----KTWAT--KGEEQEAAKKEFIEVLKTLGGELGD-KP 143 (219)
Q Consensus 75 ~~~~~~~~~---l~p~~~~~~a~~~~~~~~~~~~l~~~~~-----~~~~~--~~~~~~~~~~~l~~~l~~le~~L~~-~~ 143 (219)
++.++ ++. ++|.++.+++++++|+.+.++.+..... ..+.. .....+...+.+.+.++.+|++|++ ++
T Consensus 80 ~~~~~-~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~ 158 (214)
T PRK15113 80 EERFA-PPAWERIYPADLQARARARQIQAWLRSDLMPLREERPTDVVFAGAKKAPLSEAGKAAAEKLFAVAERLLAPGQP 158 (214)
T ss_pred HHHcC-CCCccccCCCCHHHHHHHHHHHHHHHhhhHHHhccCccchhccCCCCCcccHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99998 554 9999999999999999999876654221 11111 2334566777899999999999964 57
Q ss_pred cccCCCcchhhhhhhhhhhhhhhhhhhcCccccccCchHHHHHHHHhcccchhccCCChHH
Q 027727 144 FFGGDNFGYVDLCLIPYYCWFYSYETFGKFSVEAECPKFIAWVTRCLQRETVAKALPDEKK 204 (219)
Q Consensus 144 ~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~ 204 (219)
|++|+ +|+||+++++.+.++.. .+..+ .|+|.+|++++.++|+|+++++..++
T Consensus 159 ~l~G~-~TlADi~l~~~l~~~~~----~~~~~---~p~l~~~~~r~~~rp~~~~~~~~~~~ 211 (214)
T PRK15113 159 NLFGE-WCIADTDLALMLNRLVL----HGDEV---PERLADYATFQWQRASVQRWLALSAK 211 (214)
T ss_pred EeeCC-ccHHHHHHHHHHHHHHH----cCCCC---CHHHHHHHHHHhcCHHHHHHHHHhhh
Confidence 99996 99999999999987653 22232 29999999999999999998877654
No 5
>PRK10542 glutathionine S-transferase; Provisional
Probab=100.00 E-value=3.3e-35 Score=223.67 Aligned_cols=189 Identities=21% Similarity=0.381 Sum_probs=158.2
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEccCCC----CChhhHhhCCCCCeecEEE-eCCeeeehhHHHHHHHHhhcC
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFN----KSPLLLRMNPVHKKIPVLI-HNGKSVCESSIIVQYIDEVWK 79 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~----~~~~~~~~~p~~~~vP~l~-~~g~~l~es~~I~~yL~~~~~ 79 (219)
|+||+.+.| ++++++++|+++||+|+.+.+++.. .+++|.++||. |+||+|+ +||.+|+||.+|++||++.++
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~-g~vPvL~~~~g~~l~eS~aI~~YL~~~~~ 78 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPK-GQVPALLLDDGTLLTEGVAIMQYLADSVP 78 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcC-CCCCeEEeCCCcEeecHHHHHHHHHHhCc
Confidence 579998765 7999999999999999999998752 45889999999 9999998 588999999999999999998
Q ss_pred CCCCCC-CCCHHHHHHHHHHHHHhhhhcccchhhhhccC--hHHHHHHHHHHHHHHHHHHcccCCCCcccCCCcchhhhh
Q 027727 80 DKAPLL-PYDPYQRAQARFWVDFIDKKMYDTSRKTWATK--GEEQEAAKKEFIEVLKTLGGELGDKPFFGGDNFGYVDLC 156 (219)
Q Consensus 80 ~~~~l~-p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~ 156 (219)
++.++ |.++.++++++.|+.++.+.+.+.+...+... +...+.....+.+.++.||++|++++||+|+++|+||++
T Consensus 79 -~~~l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~ADi~ 157 (201)
T PRK10542 79 -DRQLLAPVGSLSRYHTIEWLNYIATELHKGFTPLFRPDTPEEYKPTVRAQLEKKFQYVDEALADEQWICGQRFTIADAY 157 (201)
T ss_pred -ccccCCCCCcHHHHHHHHHHHHHHhhhhhhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCCcHHhHH
Confidence 55555 67788999999999998887776554444332 223355677899999999999998899999999999999
Q ss_pred hhhhhhhhhhhhhhcCccccccCchHHHHHHHHhcccchhccCCC
Q 027727 157 LIPYYCWFYSYETFGKFSVEAECPKFIAWVTRCLQRETVAKALPD 201 (219)
Q Consensus 157 l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~ 201 (219)
+++.+.+... .+..+ ..+|+|.+|++++.++|++++++..
T Consensus 158 l~~~~~~~~~----~~~~~-~~~p~l~~w~~~~~~~p~~k~~~~~ 197 (201)
T PRK10542 158 LFTVLRWAYA----VKLNL-EGLEHIAAYMQRVAERPAVAAALKA 197 (201)
T ss_pred HHHHHHHhhc----cCCCc-ccchHHHHHHHHHHcCHHHHHHHHH
Confidence 9999888653 23333 6899999999999999999998754
No 6
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=100.00 E-value=6.5e-35 Score=224.28 Aligned_cols=188 Identities=22% Similarity=0.334 Sum_probs=154.6
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEccCCC---CChhhHhhCCCCCeecEEEe-----CC--eeeehhHHHHHHH
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFN---KSPLLLRMNPVHKKIPVLIH-----NG--KSVCESSIIVQYI 74 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~vP~l~~-----~g--~~l~es~~I~~yL 74 (219)
++||+.+ ++++++|+++|+++||+|+.+.+++.. ..++|.++||. |+||+|++ || .+|+||.||++||
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~-gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPN-NKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcC-CCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 7899886 799999999999999999999998753 47899999999 99999996 45 4799999999999
Q ss_pred HhhcCCCCCCCCCCHHHHHHHHHHHHHhhhhcccchhhh--hcc-----ChHHHHHHHHHHHHHHHHHHcccCCCCcccC
Q 027727 75 DEVWKDKAPLLPYDPYQRAQARFWVDFIDKKMYDTSRKT--WAT-----KGEEQEAAKKEFIEVLKTLGGELGDKPFFGG 147 (219)
Q Consensus 75 ~~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~l~~~~~~~--~~~-----~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G 147 (219)
++.++ .+.|.++.++++++.|+.+....+.+.+... +.. .+...+.....+.+.++.||.+|++++|++|
T Consensus 80 ~~~~~---~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G 156 (215)
T PRK13972 80 AEKTG---LFLSHETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLENSPWLGG 156 (215)
T ss_pred HHhcC---CCCCCCHHHHHHHHHHHHHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHhccCccccC
Confidence 99886 3778889999999999999988776654322 111 1344556677899999999999988899999
Q ss_pred CCcchhhhhhhhhhhhhhhhhhhcCccccccCchHHHHHHHHhcccchhccCCCh
Q 027727 148 DNFGYVDLCLIPYYCWFYSYETFGKFSVEAECPKFIAWVTRCLQRETVAKALPDE 202 (219)
Q Consensus 148 ~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~ 202 (219)
+++|+||+++++.+..... .+..+ ..+|+|.+|++++.++|++++++...
T Consensus 157 d~~t~ADi~l~~~~~~~~~----~~~~~-~~~P~l~~w~~r~~~rp~~~~~~~~~ 206 (215)
T PRK13972 157 ENYSIADIACWPWVNAWTR----QRIDL-AMYPAVKNWHERIRSRPATGQALLKA 206 (215)
T ss_pred CCCCHHHHHHHHHHHHHhh----cCCcc-hhCHHHHHHHHHHHhCHHHHHHHHHh
Confidence 9999999999887744321 12333 78999999999999999998876544
No 7
>PLN02395 glutathione S-transferase
Probab=100.00 E-value=1.4e-34 Score=222.42 Aligned_cols=195 Identities=21% Similarity=0.348 Sum_probs=159.0
Q ss_pred CCCceEEecccCCchhHHHHHHHHHhCCCceeEEccCC---CCChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHHhh
Q 027727 1 MADEVILLDFWASMFGIRVRIALAEKGVKYEYKEQDLF---NKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDEV 77 (219)
Q Consensus 1 M~~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~~~ 77 (219)
|+ ++||+.+. ++++|++++|.++|++|+.+.+++. +.+++|.++||. |+||+|+++|.+|+||.+|++||+++
T Consensus 1 ~~--~~ly~~~~-~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~-g~vP~L~~~~~~l~ES~aI~~YL~~~ 76 (215)
T PLN02395 1 MV--LKVYGPAF-ASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPF-GVVPVIVDGDYKIFESRAIMRYYAEK 76 (215)
T ss_pred Ce--EEEEcCCc-CcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHHHH
Confidence 54 89999754 5799999999999999999999875 467899999999 99999999999999999999999999
Q ss_pred cCCC-CCCCCCCHHHHHHHHHHHHHhhhhcccchhhh-----h------ccChHHHHHHHHHHHHHHHHHHcccCCCCcc
Q 027727 78 WKDK-APLLPYDPYQRAQARFWVDFIDKKMYDTSRKT-----W------ATKGEEQEAAKKEFIEVLKTLGGELGDKPFF 145 (219)
Q Consensus 78 ~~~~-~~l~p~~~~~~a~~~~~~~~~~~~l~~~~~~~-----~------~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l 145 (219)
++.. +.++|.++.++++++.|+.+.+..+.+.+... + ..+....+.....+.+.++.||++|++++|+
T Consensus 77 ~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l 156 (215)
T PLN02395 77 YRSQGPDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLSKSKYL 156 (215)
T ss_pred cCCCCcCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 9732 36999999999999999998887665443221 1 1123345667788999999999999888999
Q ss_pred cCCCcchhhhhhhhhhhhhhhhhhhcCccccccCchHHHHHHHHhcccchhccCCC
Q 027727 146 GGDNFGYVDLCLIPYYCWFYSYETFGKFSVEAECPKFIAWVTRCLQRETVAKALPD 201 (219)
Q Consensus 146 ~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~ 201 (219)
+|+++|+||+++++.+.++.. ..........+|+|++|++++.++|++++++..
T Consensus 157 ~G~~~s~ADi~l~~~~~~~~~--~~~~~~~~~~~p~L~~w~~~~~~rp~~k~~~~~ 210 (215)
T PLN02395 157 AGDFVSLADLAHLPFTEYLVG--PIGKAYLIKDRKHVSAWWDDISSRPAWKEVLAK 210 (215)
T ss_pred cCCCcCHHHHHHHHHHHHHhc--ccchhhhhccCchHHHHHHHHHcChHHHHHHHH
Confidence 999999999999998776532 011111236789999999999999999998654
No 8
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-34 Score=219.78 Aligned_cols=185 Identities=31% Similarity=0.496 Sum_probs=161.4
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEccCC--CCChhhHhhCCCCCeecEEEeCCe-eeehhHHHHHHHHhhcCCC
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQDLF--NKSPLLLRMNPVHKKIPVLIHNGK-SVCESSIIVQYIDEVWKDK 81 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~--~~~~~~~~~~p~~~~vP~l~~~g~-~l~es~~I~~yL~~~~~~~ 81 (219)
++||+.+.||+++++++++.++|++|+.+.|+.. ..+++|..+||. |+||+|+++|. +|+||.+|++||+++++ +
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~-gkVPvL~~~~~~~l~ES~AI~~YL~~~~~-~ 78 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPL-GKVPALVDDDGEVLTESGAILEYLAERYP-G 78 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCC-CCCCEEeeCCCCeeecHHHHHHHHHhhCC-C
Confidence 5899999999999999999999999999999987 478999999999 99999997655 99999999999999999 4
Q ss_pred CCCCCCCHH---HHHHHHHHHHHhhhhcccchhhhhcc--------ChHHHHHHHHHHHHHHHHHHcccCCCCcccCCCc
Q 027727 82 APLLPYDPY---QRAQARFWVDFIDKKMYDTSRKTWAT--------KGEEQEAAKKEFIEVLKTLGGELGDKPFFGGDNF 150 (219)
Q Consensus 82 ~~l~p~~~~---~~a~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~ 150 (219)
+.++|.++. +++++..|+.+....+.+.+...... .....+.....+.+.++.+|+.|+.++|++|+++
T Consensus 79 ~~l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~ 158 (211)
T COG0625 79 PPLLPADPLARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLEALLADGPYLAGDRF 158 (211)
T ss_pred CCcCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCC
Confidence 449998774 78888899999988887776654433 2456778888999999999999999999999999
Q ss_pred chhhhhhhhhhhhhhhhhhhcCccccccCchHHHHHHHHhcccchh
Q 027727 151 GYVDLCLIPYYCWFYSYETFGKFSVEAECPKFIAWVTRCLQRETVA 196 (219)
Q Consensus 151 t~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~ 196 (219)
|+||+++++.+.++.. .+..+ ..+|++.+|++++.++|.++
T Consensus 159 tiAD~~~~~~~~~~~~----~~~~~-~~~p~l~~w~~r~~~rp~~~ 199 (211)
T COG0625 159 TIADIALAPLLWRLAL----LGEEL-ADYPALKAWYERVLARPAFR 199 (211)
T ss_pred CHHHHHHHHHHHHhhh----cCccc-ccChHHHHHHHHHHcCCchh
Confidence 9999999999988553 23333 78999999999999999965
No 9
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=100.00 E-value=4.6e-34 Score=218.78 Aligned_cols=190 Identities=27% Similarity=0.421 Sum_probs=157.0
Q ss_pred EEecccCCchhHHHHHHHHHhCCCceeEEccCC----CCChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHHhhcCCC
Q 027727 6 ILLDFWASMFGIRVRIALAEKGVKYEYKEQDLF----NKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDEVWKDK 81 (219)
Q Consensus 6 ~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~----~~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~~~~~~~ 81 (219)
+||++..||+++++|++|.++||+|+.+.++.. ...+++.++||. |+||+|+++|.+|+||.+|++||++.++ +
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~ES~aI~~yl~~~~~-~ 78 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQ-GLVPTLDIDGEVLTQSLAIIEYLEETYP-D 78 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCC-CcCCEEEECCEEeecHHHHHHHHHHhCC-C
Confidence 489888999999999999999999999999862 246889999999 9999999999999999999999999998 6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhhhcccchh----hhhcc----ChH-HHHHHHHHHHHHHHHHHcccCC--CCcccCCCc
Q 027727 82 APLLPYDPYQRAQARFWVDFIDKKMYDTSR----KTWAT----KGE-EQEAAKKEFIEVLKTLGGELGD--KPFFGGDNF 150 (219)
Q Consensus 82 ~~l~p~~~~~~a~~~~~~~~~~~~l~~~~~----~~~~~----~~~-~~~~~~~~l~~~l~~le~~L~~--~~~l~G~~~ 150 (219)
..++|.++.+++++++|+.+....+..... ..+.. +++ ..+...+.+.+.|+.||++|++ ++|++|+++
T Consensus 79 ~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~ 158 (210)
T TIGR01262 79 PPLLPADPIKRARVRALALLIACDIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQPHAGAFCVGDTP 158 (210)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhcccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEeeCCCC
Confidence 679999999999999999988766543211 11111 122 2334556799999999999975 469999999
Q ss_pred chhhhhhhhhhhhhhhhhhhcCccccccCchHHHHHHHHhcccchhccCCCh
Q 027727 151 GYVDLCLIPYYCWFYSYETFGKFSVEAECPKFIAWVTRCLQRETVAKALPDE 202 (219)
Q Consensus 151 t~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~ 202 (219)
|+||+++++.+.++.. .+..+ ..||+|++|++++.++|+++++....
T Consensus 159 T~ADi~~~~~l~~~~~----~~~~~-~~~p~l~~~~~~~~~rp~~~~~~~~~ 205 (210)
T TIGR01262 159 TLADLCLVPQVYNAER----FGVDL-TPYPTLRRIAAALAALPAFQRAHPEN 205 (210)
T ss_pred CHHHHHHHHHHHHHHH----cCCCc-ccchHHHHHHHHHhcCHHHHHhCccc
Confidence 9999999999987653 12233 78999999999999999999988654
No 10
>PRK10357 putative glutathione S-transferase; Provisional
Probab=100.00 E-value=7.1e-34 Score=216.51 Aligned_cols=192 Identities=22% Similarity=0.317 Sum_probs=157.6
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEE-eCCeeeehhHHHHHHHHhhcCCCCC
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLI-HNGKSVCESSIIVQYIDEVWKDKAP 83 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~-~~g~~l~es~~I~~yL~~~~~~~~~ 83 (219)
++||+++.||++++++++|+++|++|+.+.++.....+++...||. |+||+|+ ++|.+++||.+|++||++.++ ++.
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~-g~vP~L~~~~g~~l~eS~aI~~yL~~~~~-~~~ 78 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPL-GKVPALVTEEGECWFDSPIIAEYIELLNV-APA 78 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCc-cCCCeEEeCCCCeeecHHHHHHHHHHhCC-CCC
Confidence 5899999999999999999999999999999887667788889999 9999998 688999999999999999987 667
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhcccchhhhh---cc----ChHHHHHHHHHHHHHHHHHHcccCCCCcccCCCcchhhhh
Q 027727 84 LLPYDPYQRAQARFWVDFIDKKMYDTSRKTW---AT----KGEEQEAAKKEFIEVLKTLGGELGDKPFFGGDNFGYVDLC 156 (219)
Q Consensus 84 l~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~---~~----~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~ 156 (219)
++|.++.+++++++|..+.++.+........ .. .....+.....+.+.|+.||++|++++ ++|+++|+||++
T Consensus 79 l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~-l~Gd~~t~ADi~ 157 (202)
T PRK10357 79 MLPRDPLAALRVRQLEALADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLVDGT-LKTDTVNLATIA 157 (202)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhccCc-ccCCCcCHHHHH
Confidence 9999999999999998887665543321111 11 123345667789999999999998777 999999999999
Q ss_pred hhhhhhhhhhhhhhcCccccccCchHHHHHHHHhcccchhccCCC
Q 027727 157 LIPYYCWFYSYETFGKFSVEAECPKFIAWVTRCLQRETVAKALPD 201 (219)
Q Consensus 157 l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~ 201 (219)
+++.+.++... ..+..+..++|++++|++++.++|+|+.+.+.
T Consensus 158 l~~~l~~~~~~--~~~~~~~~~~p~l~~~~~~i~~rp~~~~~~~~ 200 (202)
T PRK10357 158 IACAVGYLNFR--RVAPGWCVDRPHLVKLVENLFQRESFARTEPP 200 (202)
T ss_pred HHHHHHHHHhc--ccCcchhhcChHHHHHHHHHhcChhhhhcCCC
Confidence 99999876531 11112236799999999999999999998754
No 11
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=100.00 E-value=3.1e-33 Score=215.27 Aligned_cols=196 Identities=20% Similarity=0.284 Sum_probs=157.8
Q ss_pred ccCCchhHHHHHHHHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHHhhcCCC--CCCCCC
Q 027727 10 FWASMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDEVWKDK--APLLPY 87 (219)
Q Consensus 10 ~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~~~~~~~--~~l~p~ 87 (219)
.+.||+|++++++|.++|++|+.+.+++.+++++|.++||. |+||+|+++|.+|+||.+|++||++.++++ +.+.|.
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~-g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~p~ 94 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPG-THPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLSPK 94 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcC-CCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCCCC
Confidence 35699999999999999999999999999889999999998 999999999999999999999999999732 446666
Q ss_pred CHHHHHHHHHHHHHhhhhcccchhhhhccC-hHHHHHHHHHHHHHHHHHHcccC------------------CCCcccCC
Q 027727 88 DPYQRAQARFWVDFIDKKMYDTSRKTWATK-GEEQEAAKKEFIEVLKTLGGELG------------------DKPFFGGD 148 (219)
Q Consensus 88 ~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~l~~le~~L~------------------~~~~l~G~ 148 (219)
++..++.... +...+..++.+. +...+...+.+.+.++.||++|. +++|+.|+
T Consensus 95 ~~~~~~~~~~--------l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~~~~~~~f~~Gd 166 (236)
T TIGR00862 95 HPESNTAGLD--------IFAKFSAYIKNSNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDEKVSRRKFLDGD 166 (236)
T ss_pred CHHHHHHHHH--------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCCcccCC
Confidence 6655443211 111121222222 33334455668899999999985 57999999
Q ss_pred Ccchhhhhhhhhhhhhhhh-hhhcCccccccCchHHHHHHHHhcccchhccCCChHHHHHHHHHHHH
Q 027727 149 NFGYVDLCLIPYYCWFYSY-ETFGKFSVEAECPKFIAWVTRCLQRETVAKALPDEKKVFEFVSVLRE 214 (219)
Q Consensus 149 ~~t~aD~~l~~~l~~~~~~-~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (219)
++|+|||++++.+.++..+ ....++.+..++|+|.+|++++.++|+|+++.+..+.....++...+
T Consensus 167 ~~tlaD~~l~p~l~~l~~~~~~~~~~~i~~~~p~l~~w~~~~~~~~sf~~t~p~~~~i~~~~~~~~~ 233 (236)
T TIGR00862 167 ELTLADCNLLPKLHIVKVVAKKYRNFDIPAEFTGVWRYLSNAYAREEFTNTCPDDKEIELAYADVAK 233 (236)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHhCcCccccCchHHHHHHHHhccchHHhhCCChHHHHHHHHHHhh
Confidence 9999999999999998864 33456776799999999999999999999999999998888777643
No 12
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-34 Score=201.40 Aligned_cols=194 Identities=29% Similarity=0.442 Sum_probs=166.4
Q ss_pred CCceEEecccCCchhHHHHHHHHHhCCCceeEEccCCC----CChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHHhh
Q 027727 2 ADEVILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFN----KSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDEV 77 (219)
Q Consensus 2 ~~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~----~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~~~ 77 (219)
+.+++||+++.|..++|||++|..+||+|+.++|++.. ...+|..+||+ ++||+|+.||.+|+||.||++||++.
T Consensus 3 ~~KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm-~kVP~L~i~g~tl~eS~AII~YLeEt 81 (217)
T KOG0868|consen 3 AAKPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPM-EKVPTLVIDGLTLTESLAIIEYLEET 81 (217)
T ss_pred cccchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCch-hhCCeEEECCEEeehHHHHHHHHHhc
Confidence 46899999999999999999999999999999999762 45689999999 99999999999999999999999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhhhhcccchhh----hhccC--hHHHHHHHHHHHHHHHHHHccc--CCCCcccCCC
Q 027727 78 WKDKAPLLPYDPYQRAQARFWVDFIDKKMYDTSRK----TWATK--GEEQEAAKKEFIEVLKTLGGEL--GDKPFFGGDN 149 (219)
Q Consensus 78 ~~~~~~l~p~~~~~~a~~~~~~~~~~~~l~~~~~~----~~~~~--~~~~~~~~~~l~~~l~~le~~L--~~~~~l~G~~ 149 (219)
+| +++++|+++..|+.+++....+.+.+.+.--. +...+ +....-....+.+.+.+||..| ..++|.+|++
T Consensus 82 ~P-~ppLLP~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~~~~~~W~q~~ItkGF~ALEklL~~~aGkycvGDe 160 (217)
T KOG0868|consen 82 YP-DPPLLPKDPHKRAKARAISLLIASGIQPLQNLSVLKMLNEKEPGYGDQWAQHFITKGFTALEKLLKSHAGKYCVGDE 160 (217)
T ss_pred CC-CCCCCCcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhcccccchhhHHHHHHHHHhHHHHHHHHHHccCCcccCce
Confidence 99 89999999999999999999999888765222 22222 2234555667899999999999 4689999999
Q ss_pred cchhhhhhhhhhhhhhhhhhhcCccccccCchHHHHHHHHhcccchhccCCCh
Q 027727 150 FGYVDLCLIPYYCWFYSYETFGKFSVEAECPKFIAWVTRCLQRETVAKALPDE 202 (219)
Q Consensus 150 ~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~ 202 (219)
+|+||+++.+.+..... ...++ ..||-+.+..+.+...|.|+...++.
T Consensus 161 vtiADl~L~pqv~nA~r----f~vdl-~PYPti~ri~e~l~elpaFq~ahP~n 208 (217)
T KOG0868|consen 161 VTIADLCLPPQVYNANR----FHVDL-TPYPTITRINEELAELPAFQAAHPDN 208 (217)
T ss_pred eehhhhccchhhhhhhh----ccccC-CcCchHHHHHHHHHhCHHHHhcCCCC
Confidence 99999999999877542 23444 89999999999999999999988764
No 13
>PRK11752 putative S-transferase; Provisional
Probab=100.00 E-value=1.3e-32 Score=217.02 Aligned_cols=195 Identities=21% Similarity=0.289 Sum_probs=154.1
Q ss_pred CceEEecccCCchhHHHHHHHHHh------CCCceeEEccCC---CCChhhHhhCCCCCeecEEEeC----CeeeehhHH
Q 027727 3 DEVILLDFWASMFGIRVRIALAEK------GVKYEYKEQDLF---NKSPLLLRMNPVHKKIPVLIHN----GKSVCESSI 69 (219)
Q Consensus 3 ~~~~L~~~~~s~~~~~v~~~l~~~------gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~----g~~l~es~~ 69 (219)
..++||+.+ ||+|++|+++|+++ |++|+.+.+++. ..+++|.++||. |+||+|+++ |.+|+||.+
T Consensus 43 ~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~-GkVP~Lv~~dg~~~~~L~ES~A 120 (264)
T PRK11752 43 HPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPN-SKIPALLDRSGNPPIRVFESGA 120 (264)
T ss_pred CCeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCC-CCCCEEEeCCCCCCeEEEcHHH
Confidence 358999875 99999999999997 899999999875 357899999999 999999964 368999999
Q ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhhhccc---chhhhhc--cC--hHHHHHHHHHHHHHHHHHHcccCCC
Q 027727 70 IVQYIDEVWKDKAPLLPYDPYQRAQARFWVDFIDKKMYD---TSRKTWA--TK--GEEQEAAKKEFIEVLKTLGGELGDK 142 (219)
Q Consensus 70 I~~yL~~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~l~~---~~~~~~~--~~--~~~~~~~~~~l~~~l~~le~~L~~~ 142 (219)
|++||++.++ .++|.++.+++++++|+.+....+.. .+...+. .. ....+.....+.+.|+.||++|+++
T Consensus 121 Il~YL~~~~~---~L~P~~~~era~v~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~le~~L~~~ 197 (264)
T PRK11752 121 ILLYLAEKFG---AFLPKDLAARTETLNWLFWQQGSAPFLGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVLDKQLAEH 197 (264)
T ss_pred HHHHHHHhcC---CcCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999987 38999999999999999887664311 1111111 11 2334556677899999999999988
Q ss_pred CcccCCCcchhhhhhhhhhhhhhhhhhhc--CccccccCchHHHHHHHHhcccchhccCCCh
Q 027727 143 PFFGGDNFGYVDLCLIPYYCWFYSYETFG--KFSVEAECPKFIAWVTRCLQRETVAKALPDE 202 (219)
Q Consensus 143 ~~l~G~~~t~aD~~l~~~l~~~~~~~~~~--~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~ 202 (219)
+||+|+++|+|||++++.+.++....... .......+|+|++|++++.++|+++++...+
T Consensus 198 ~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~~P~L~~w~~rv~~rPs~k~~~~~~ 259 (264)
T PRK11752 198 EYIAGDEYTIADIAIWPWYGNLVLGNLYDAAEFLDVGSYKHVQRWAKEIAERPAVKRGRIVN 259 (264)
T ss_pred CCCCCCccCHHHHHHHHHHHHHhhccccccccccCcccCHHHHHHHHHHHhCHHHHHHHhcc
Confidence 99999999999999999887764311011 1111368999999999999999999987654
No 14
>PLN02378 glutathione S-transferase DHAR1
Probab=100.00 E-value=4.7e-32 Score=207.95 Aligned_cols=185 Identities=25% Similarity=0.371 Sum_probs=145.3
Q ss_pred ccCCchhHHHHHHHHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHHhhcCCCCCCCCCCH
Q 027727 10 FWASMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDEVWKDKAPLLPYDP 89 (219)
Q Consensus 10 ~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~~~~~~~~~l~p~~~ 89 (219)
+..||||++|+++|+++|++|+.+.+++.+++++|.++||. |+||+|++||.+|+||.+|++||+++++ +..+. ++
T Consensus 17 ~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~-G~VPvL~~~~~~l~ES~aI~~YL~~~~~-~~~l~--~~ 92 (213)
T PLN02378 17 LGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQ-GKVPVLKIDDKWVTDSDVIVGILEEKYP-DPPLK--TP 92 (213)
T ss_pred CCCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCC-CCCCEEEECCEEecCHHHHHHHHHHhCC-CCCCC--CH
Confidence 44599999999999999999999999998888999999999 9999999999999999999999999998 44443 56
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhhccChHHHHHHHHHHHHHHHHHHcccC--CCCcccCCCcchhhhhhhhhhhhhhhh
Q 027727 90 YQRAQARFWVDFIDKKMYDTSRKTWATKGEEQEAAKKEFIEVLKTLGGELG--DKPFFGGDNFGYVDLCLIPYYCWFYSY 167 (219)
Q Consensus 90 ~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~--~~~~l~G~~~t~aD~~l~~~l~~~~~~ 167 (219)
.+++++...+.. .+...+... ...+.....+.+.|+.+|++|+ +++|++|+++|+||+++++.+.++...
T Consensus 93 ~~~a~i~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~ADi~l~~~~~~l~~~ 164 (213)
T PLN02378 93 AEFASVGSNIFG-------TFGTFLKSK-DSNDGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLAPKLYHLQVA 164 (213)
T ss_pred HHHHHHHHHHHH-------HHHHHHhcC-ChhhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCchhhHHHHHHHHHHHHH
Confidence 667766543321 111122211 1123344677888999999996 579999999999999999998886542
Q ss_pred -hhhcCccccccCchHHHHHHHHhcccchhccCCChHHHH
Q 027727 168 -ETFGKFSVEAECPKFIAWVTRCLQRETVAKALPDEKKVF 206 (219)
Q Consensus 168 -~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~ 206 (219)
....+......+|+|++|++++.++|++++++...+...
T Consensus 165 ~~~~~~~~~~~~~p~l~~w~~~~~~rpa~~~~~~~~~~~~ 204 (213)
T PLN02378 165 LGHFKSWSVPESFPHVHNYMKTLFSLDSFEKTKTEEKYVI 204 (213)
T ss_pred HHHhcCCCchhHhHHHHHHHHHHhcCCCeecccCChHHHH
Confidence 212233334789999999999999999999988775544
No 15
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=100.00 E-value=1.2e-31 Score=210.69 Aligned_cols=187 Identities=22% Similarity=0.318 Sum_probs=148.2
Q ss_pred cCCchhHHHHHHHHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHHhhcCCCCCCCCCCHH
Q 027727 11 WASMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDEVWKDKAPLLPYDPY 90 (219)
Q Consensus 11 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~~~~~~~~~l~p~~~~ 90 (219)
..||||++++++|+++|++|+.+.+++.+++++|.++||. |+||+|+++|.+|+||.+|++||++.++ ++.+. ++.
T Consensus 71 g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~-GkVPvL~~d~~~L~ES~aI~~YL~e~~p-~~~L~--~~~ 146 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPE-GKVPVVKLDEKWVADSDVITQALEEKYP-DPPLA--TPP 146 (265)
T ss_pred CCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCC-CCCCEEEECCEEEecHHHHHHHHHHHCC-CCCCC--CHH
Confidence 3499999999999999999999999998889999999999 9999999989999999999999999999 55553 567
Q ss_pred HHHHHHHHHHHhhhhcccchhhhhccChHHHHHHHHHHHHHHHHHHcccC-CCCcccCCCcchhhhhhhhhhhhhhhh-h
Q 027727 91 QRAQARFWVDFIDKKMYDTSRKTWATKGEEQEAAKKEFIEVLKTLGGELG-DKPFFGGDNFGYVDLCLIPYYCWFYSY-E 168 (219)
Q Consensus 91 ~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~-~~~~l~G~~~t~aD~~l~~~l~~~~~~-~ 168 (219)
++++++.++... +...+.... ..+...+.+.+.++.||++|+ +++|++|+++|+||+++++.+.++... .
T Consensus 147 era~i~~~l~~~-------~~~~~~~~~-~~~~~~~~l~~~l~~LE~~L~~~g~yl~Gd~~SlADi~l~p~L~~l~~~~~ 218 (265)
T PLN02817 147 EKASVGSKIFST-------FIGFLKSKD-PGDGTEQALLDELTSFDDYIKENGPFINGEKISAADLSLGPKLYHLEIALG 218 (265)
T ss_pred HHHHHHHHHHHH-------HHHHhccCC-cchHHHHHHHHHHHHHHHHHhcCCCeeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 788877664321 111222111 112234567888999999996 479999999999999999999887642 1
Q ss_pred hhcCccccccCchHHHHHHHHhcccchhccCCChHHHHHHH
Q 027727 169 TFGKFSVEAECPKFIAWVTRCLQRETVAKALPDEKKVFEFV 209 (219)
Q Consensus 169 ~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (219)
...+..+...+|+|++|++++.++|+|+++.+..+++...|
T Consensus 219 ~~~~~~i~~~~P~L~~w~~ri~~rps~~~~~~~~~~~~~~~ 259 (265)
T PLN02817 219 HYKNWSVPDSLPFVKSYMKNIFSMESFVKTRALPEDVIAGW 259 (265)
T ss_pred HhcCCCccccCHHHHHHHHHHhcchhHhhcCCCHHHHHHHh
Confidence 12233344789999999999999999999999877655444
No 16
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-31 Score=206.74 Aligned_cols=198 Identities=26% Similarity=0.377 Sum_probs=170.6
Q ss_pred ceEEecccCCchhHHHHHHHHHhCCCceeEEccCC---CCChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHHhhcCC
Q 027727 4 EVILLDFWASMFGIRVRIALAEKGVKYEYKEQDLF---NKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDEVWKD 80 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~~~~~~ 80 (219)
.++||+...|+.++++.+++.++|++|+.+.++.. +.+++|.++||. |+||+|+++|..++||.||+.||.+++..
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~-~kVP~l~d~~~~l~eS~AI~~Yl~~ky~~ 80 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPL-GKVPALEDGGLTLWESHAILRYLAEKYGP 80 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcC-CCCCeEecCCeEEeeHHHHHHHHHHHcCC
Confidence 48999999999999999999999999999988765 689999999999 99999999999999999999999998862
Q ss_pred -CCCCCCCCHHHHHHHHHHHHHhhhhcccch--hhhhcc-------ChHHHHHHHHHHHHHHHHHHcccCCCCcccCCCc
Q 027727 81 -KAPLLPYDPYQRAQARFWVDFIDKKMYDTS--RKTWAT-------KGEEQEAAKKEFIEVLKTLGGELGDKPFFGGDNF 150 (219)
Q Consensus 81 -~~~l~p~~~~~~a~~~~~~~~~~~~l~~~~--~~~~~~-------~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~ 150 (219)
+..++|.++.+++.+++|+.+..+.+.+.. ...+.. +.....+....+.++++.+|.+|.++.|++|+++
T Consensus 81 ~~~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~yl~g~~~ 160 (226)
T KOG0867|consen 81 LGGILLPKDLKERAIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKTQVYLAGDQL 160 (226)
T ss_pred CCcccCCcCHHHHHHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHccCCcccCCcc
Confidence 334999999999999999999999998873 332222 4667889999999999999999999999999999
Q ss_pred chhhhhhhhhhhhhhhhhhhcCccccccCchHHHHHHHHhcccchhccCCChHH
Q 027727 151 GYVDLCLIPYYCWFYSYETFGKFSVEAECPKFIAWVTRCLQRETVAKALPDEKK 204 (219)
Q Consensus 151 t~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~ 204 (219)
|+||+.+.+.+..+.. . ........++|++.+|++++.++|.+++.......
T Consensus 161 tlADl~~~~~~~~~~~-~-~~~~~~~~~~p~v~~W~~~~~~~P~~~e~~~~~~~ 212 (226)
T KOG0867|consen 161 TLADLSLASTLSQFQG-K-FATEKDFEKYPKVARWYERIQKRPAYEEANEKGAA 212 (226)
T ss_pred cHHHHHHhhHHHHHhH-h-hhhhhhhhhChHHHHHHHHHHhCccHHHHHHHHHH
Confidence 9999999999988731 1 12233448999999999999999998886654433
No 17
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.98 E-value=1.2e-31 Score=204.51 Aligned_cols=189 Identities=19% Similarity=0.216 Sum_probs=141.2
Q ss_pred CCCceEEecccCCchhHHHHHHHHHhCCCceeEEccCCCCChhhH--------hhCCCCCeecEEEeCCeeeehhHHHHH
Q 027727 1 MADEVILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLL--------RMNPVHKKIPVLIHNGKSVCESSIIVQ 72 (219)
Q Consensus 1 M~~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~--------~~~p~~~~vP~l~~~g~~l~es~~I~~ 72 (219)
|+.+++||+++.+++++++|++|+++|++|+.+.++. .. +++. ..||+ |+||+|++||.+|+||.||++
T Consensus 1 m~~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~-~~-~~~~~~~~~~~~~~nP~-g~vP~L~~~~~~l~eS~AI~~ 77 (205)
T PTZ00057 1 MAEEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGE-NG-DAFIEFKNFKKEKDTPF-EQVPILEMDNIIFAQSQAIVR 77 (205)
T ss_pred CCCceEEEecCCCcchHHHHHHHHHcCCCeEEEeccc-cc-hHHHHHHhccccCCCCC-CCCCEEEECCEEEecHHHHHH
Confidence 8878999999999999999999999999999997743 22 2332 48999 999999999999999999999
Q ss_pred HHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhhhcccchhh-hhccChHHHHHHHHHHHHHHHHHHcccCC--CCcccCCC
Q 027727 73 YIDEVWKDKAPLLPYDPYQRAQARFWVDFIDKKMYDTSRK-TWATKGEEQEAAKKEFIEVLKTLGGELGD--KPFFGGDN 149 (219)
Q Consensus 73 yL~~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~le~~L~~--~~~l~G~~ 149 (219)
||+++++ +.+.+..++..++....... .+...+.. ... .....+.....+++.++.||+.|.+ ++|++|++
T Consensus 78 YLa~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~Gd~ 151 (205)
T PTZ00057 78 YLSKKYK----ICGESELNEFYADMIFCGVQ-DIHYKFNNTNLF-KQNETTFLNEELPKWSGYFENILKKNHCNYFVGDN 151 (205)
T ss_pred HHHHHcC----CCCCCHHHHHHHHHHHHHHH-HHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCc
Confidence 9999998 34445444444433322221 22111111 111 1223344567899999999999964 48999999
Q ss_pred cchhhhhhhhhhhhhhhhhhhcCccccccCchHHHHHHHHhcccchhccCCCh
Q 027727 150 FGYVDLCLIPYYCWFYSYETFGKFSVEAECPKFIAWVTRCLQRETVAKALPDE 202 (219)
Q Consensus 150 ~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~ 202 (219)
+|+||+++++.+.++.. ..+..+ ..||+|++|+++++++|+++++++++
T Consensus 152 ~T~AD~~l~~~~~~~~~---~~~~~l-~~~P~l~~~~~r~~~~P~~k~y~~~~ 200 (205)
T PTZ00057 152 LTYADLAVFNLYDDIET---KYPNSL-KNFPLLKAHNEFISNLPNIKNYISNR 200 (205)
T ss_pred ccHHHHHHHHHHHHHHH---hChhhh-ccChhHHHHHHHHHhChHHHHHHHhC
Confidence 99999999999877652 112233 78999999999999999999998654
No 18
>PRK10387 glutaredoxin 2; Provisional
Probab=99.97 E-value=1.2e-30 Score=199.87 Aligned_cols=179 Identities=18% Similarity=0.175 Sum_probs=140.1
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEE-eCCeeeehhHHHHHHHHhhcCCCCC
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLI-HNGKSVCESSIIVQYIDEVWKDKAP 83 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~-~~g~~l~es~~I~~yL~~~~~~~~~ 83 (219)
|+||++..||+|++++++|+++||+|+.+.++..... .-...||. |+||+|+ ++|.+|+||.+|++||+++++ ++.
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~-~~~~~~p~-~~VPvL~~~~g~~l~eS~aI~~yL~~~~~-~~~ 77 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEA-TPIRMIGQ-KQVPILQKDDGSYMPESLDIVHYIDELDG-KPL 77 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchh-hHHHhcCC-cccceEEecCCeEecCHHHHHHHHHHhCC-Ccc
Confidence 6899999999999999999999999999988755322 22578998 8999995 789999999999999999998 544
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhcccchhhhhcc-------Ch---------------------HHHHHHHHHHHHHHHHH
Q 027727 84 LLPYDPYQRAQARFWVDFIDKKMYDTSRKTWAT-------KG---------------------EEQEAAKKEFIEVLKTL 135 (219)
Q Consensus 84 l~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~-------~~---------------------~~~~~~~~~l~~~l~~l 135 (219)
+.+ ..++.++.|+.+....+...+...+.. .. ...+.....+.+.|+.+
T Consensus 78 l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 154 (210)
T PRK10387 78 LTG---KRSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLRAL 154 (210)
T ss_pred CCC---cccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHHHH
Confidence 432 257788889888776655443322210 00 01135567899999999
Q ss_pred HcccCCCCcccCCCcchhhhhhhhhhhhhhhhhhhcCccccccCchHHHHHHHHhcccchh
Q 027727 136 GGELGDKPFFGGDNFGYVDLCLIPYYCWFYSYETFGKFSVEAECPKFIAWVTRCLQRETVA 196 (219)
Q Consensus 136 e~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~ 196 (219)
|++|++ +|++|+++|+||+++++.+.++..+ .+. ..+|+|.+|++|+.++|++.
T Consensus 155 e~~L~~-~~l~G~~~s~ADi~l~~~l~~~~~~---~~~---~~~p~l~~w~~r~~~r~~~~ 208 (210)
T PRK10387 155 DPLIVK-PNAVNGELSTDDIHLFPILRNLTLV---KGI---EWPPRVADYRDNMSKKTQVP 208 (210)
T ss_pred HHHhcC-ccccCCCCCHHHHHHHHHHhcceee---cCC---CCCHHHHHHHHHHHHHhCCC
Confidence 999986 9999999999999999999987642 222 23599999999999999763
No 19
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.96 E-value=2.8e-28 Score=186.46 Aligned_cols=176 Identities=18% Similarity=0.207 Sum_probs=133.2
Q ss_pred EEecccCCchhHHHHHHHHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEE-eCCeeeehhHHHHHHHHhhcCCCCCC
Q 027727 6 ILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLI-HNGKSVCESSIIVQYIDEVWKDKAPL 84 (219)
Q Consensus 6 ~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~-~~g~~l~es~~I~~yL~~~~~~~~~l 84 (219)
+||++..||+|+|||++|.++|++|+.+.++.... ....+.||. |+||+|+ +||.+++||.+|++||+++++ .+.+
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~-~~~~~~np~-g~vP~l~~~~g~~l~es~~I~~yL~~~~~-~~~~ 77 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDE-ETPIRMIGA-KQVPILQKDDGRAMPESLDIVAYFDKLDG-EPLL 77 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcc-hhHHHhcCC-CCcceEEeeCCeEeccHHHHHHHHHHhCC-CccC
Confidence 58999999999999999999999999987755432 234789998 9999998 889999999999999999998 4434
Q ss_pred CCCCHHHHHHHHHHHHHhhhhcccchhhhhcc-----------------ChHH-----------HHHHHHHHHHHHHHHH
Q 027727 85 LPYDPYQRAQARFWVDFIDKKMYDTSRKTWAT-----------------KGEE-----------QEAAKKEFIEVLKTLG 136 (219)
Q Consensus 85 ~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~-----------------~~~~-----------~~~~~~~l~~~l~~le 136 (219)
.|. .+++++.|+.++...+...+.+.+.. +.+. .++....+++.|+.+|
T Consensus 78 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~le 154 (209)
T TIGR02182 78 TGK---VSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEELD 154 (209)
T ss_pred CCC---ChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHHHH
Confidence 332 45667777766555443332221110 0000 1356678999999999
Q ss_pred cccCCCCcccCCCcchhhhhhhhhhhhhhhhhhhcCccccccCc-hHHHHHHHHhcccch
Q 027727 137 GELGDKPFFGGDNFGYVDLCLIPYYCWFYSYETFGKFSVEAECP-KFIAWVTRCLQRETV 195 (219)
Q Consensus 137 ~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~p-~l~~~~~~~~~~~~~ 195 (219)
++|++++|+.| ++|+||+++++.+.++... .+. .+| +|.+|++|+++++++
T Consensus 155 ~~L~~~~~l~g-~~TiADi~l~~~l~~~~~~---~~~----~~p~~l~~w~~Ri~ar~~~ 206 (209)
T TIGR02182 155 KLIDGPNAVNG-ELSEDDILVFPLLRNLTLV---AGI----NWPSRVADYLDNMSKKSKV 206 (209)
T ss_pred HHHhCccccCC-CCCHHHHHHHHHhcCeeee---cCC----CCChHHHHHHHHHHHHhCC
Confidence 99999999955 6999999999999887642 121 256 999999999998875
No 20
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.9e-26 Score=171.58 Aligned_cols=194 Identities=22% Similarity=0.230 Sum_probs=158.1
Q ss_pred CCCceEEecccCCchhHHHHHHHHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHHhhcCC
Q 027727 1 MADEVILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDEVWKD 80 (219)
Q Consensus 1 M~~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~~~~~~ 80 (219)
|+ .++|++++..+++..+|+++...|++|+.+.+...+.-.......|+ ||+|+|..||..|.+|.||++||+++++
T Consensus 1 m~-~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~~~K~~~pf-gqlP~l~vDg~~i~QS~AI~RyLArk~g- 77 (206)
T KOG1695|consen 1 MP-PYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWEELKDKMPF-GQLPVLEVDGKKLVQSRAILRYLARKFG- 77 (206)
T ss_pred CC-ceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccchhhhcccCCC-CCCCEEeECCEeeccHHHHHHHHHHHhC-
Confidence 55 48999999999999999999999999999999876532333455898 9999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhhhcccchhhhhcc----C-hHHHH-HHHHHHHHHHHHHHcccC--CCCcccCCCcch
Q 027727 81 KAPLLPYDPYQRAQARFWVDFIDKKMYDTSRKTWAT----K-GEEQE-AAKKEFIEVLKTLGGELG--DKPFFGGDNFGY 152 (219)
Q Consensus 81 ~~~l~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~----~-~~~~~-~~~~~l~~~l~~le~~L~--~~~~l~G~~~t~ 152 (219)
+.++++.++++++...+...+.....+...+.. + .+..+ .......+.+..++..|. ++.||+|+++|+
T Consensus 78 ---l~Gkt~~E~a~vD~i~d~~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~Pa~~~~~~~~~~~L~~~~sgflvGd~lT~ 154 (206)
T KOG1695|consen 78 ---LAGKTEEEEAWVDMIVDQFKDFRWEIFRQPYTAPEAGKSEEELDKLYLPAKPKYFKILEKILKKNKSGFLVGDKLTW 154 (206)
T ss_pred ---cCCCCHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhccchhhhhhhhccchHHHHHHHHHHHHhCCCCeeecCcccH
Confidence 999999999999999888877665534433331 1 22222 455667888999999995 567999999999
Q ss_pred hhhhhhhhhhhhhhhhhhcCccccccCchHHHHHHHHhcccchhccCCChH
Q 027727 153 VDLCLIPYYCWFYSYETFGKFSVEAECPKFIAWVTRCLQRETVAKALPDEK 203 (219)
Q Consensus 153 aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~ 203 (219)
||+.++..+..+... ........+|+|+++.+++.+.|.++++++.+.
T Consensus 155 aDl~i~e~l~~l~~~---~~~~~~~~~P~L~a~~~kv~~~p~ik~~i~~r~ 202 (206)
T KOG1695|consen 155 ADLVIAEHLDTLEEL---LDPSALDHFPKLKAFKERVSSIPNIKKYLESRP 202 (206)
T ss_pred HHHHHHHHHHHHHHh---cCchhhccChHHHHHHHHHhcCchHHHHHhcCC
Confidence 999999999887752 222334778999999999999999999887653
No 21
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.93 E-value=8.9e-26 Score=169.40 Aligned_cols=208 Identities=22% Similarity=0.323 Sum_probs=154.6
Q ss_pred ceEEecccCCchhHHHHHHHHHhCCCceeEEccCC---CCChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHHhhcCC
Q 027727 4 EVILLDFWASMFGIRVRIALAEKGVKYEYKEQDLF---NKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDEVWKD 80 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~~~~~~ 80 (219)
.+.||.++.|-.+||||+++.++||+|+...|++. ...+||...||. |.||||+++..+|+++.-|+.|+++.+-+
T Consensus 26 ~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~-gevPVl~~g~~II~d~tqIIdYvErtf~g 104 (325)
T KOG4420|consen 26 SLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPG-GEVPVLIHGDNIISDYTQIIDYVERTFTG 104 (325)
T ss_pred cceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCC-CCCceEecCCeecccHHHHHHHHHHhhcc
Confidence 38899999999999999999999999999999987 578999999997 99999999999999999999999999986
Q ss_pred CCCCCCC-CHHHHHHHHHHHHHhh---------hh-----c-----ccchh---hhh------------cc---------
Q 027727 81 KAPLLPY-DPYQRAQARFWVDFID---------KK-----M-----YDTSR---KTW------------AT--------- 116 (219)
Q Consensus 81 ~~~l~p~-~~~~~a~~~~~~~~~~---------~~-----l-----~~~~~---~~~------------~~--------- 116 (219)
+..+.|+ +..+..++.......+ ++ + .|.+. ... ..
T Consensus 105 er~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pdla~ay~ 184 (325)
T KOG4420|consen 105 ERVLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPDLAEAYL 184 (325)
T ss_pred cccccccccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCchhhHHHH
Confidence 6678884 2222222221111111 00 0 11111 000 00
Q ss_pred --------------ChHHHHHHHHHHHHHHHHHHcccCC----CCcccCCCcchhhhhhhhhhhhhhhhhhhcCcccc-c
Q 027727 117 --------------KGEEQEAAKKEFIEVLKTLGGELGD----KPFFGGDNFGYVDLCLIPYYCWFYSYETFGKFSVE-A 177 (219)
Q Consensus 117 --------------~~~~~~~~~~~l~~~l~~le~~L~~----~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~-~ 177 (219)
+.....+....+.+.|+..|+.|.+ ..||+|+.+|+||+.+.+.|+++..++.. ...|. +
T Consensus 185 akqkkl~~kl~~hdd~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL~G~efslADVsLg~~LhRL~~Lg~e-~~yw~~g 263 (325)
T KOG4420|consen 185 AKQKKLMAKLLEHDDVSYLKKILDELAMVLDQVETELEKRKLCELWLCGCEFSLADVSLGATLHRLKFLGLE-KKYWEDG 263 (325)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhccccceeeccccchHHHHHHHHHHHHHHHcccH-HHhcccC
Confidence 0112344556667778888888855 68999999999999999999999987632 23343 7
Q ss_pred cCchHHHHHHHHhcccchhccCCChHHHHHHHHHHH
Q 027727 178 ECPKFIAWVTRCLQRETVAKALPDEKKVFEFVSVLR 213 (219)
Q Consensus 178 ~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (219)
..|||..|+.++++|++|+++++..-+...+...++
T Consensus 264 srpnle~Yf~rvrrR~sf~kvlg~~fnilr~~~~~~ 299 (325)
T KOG4420|consen 264 SRPNLESYFERVRRRFSFRKVLGDIFNILRFRLVKR 299 (325)
T ss_pred CCccHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHh
Confidence 999999999999999999999988776665443333
No 22
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.91 E-value=3.6e-23 Score=151.18 Aligned_cols=195 Identities=19% Similarity=0.311 Sum_probs=160.5
Q ss_pred cCCchhHHHHHHHHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHHhhcCCCCCCCCCCHH
Q 027727 11 WASMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDEVWKDKAPLLPYDPY 90 (219)
Q Consensus 11 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~~~~~~~~~l~p~~~~ 90 (219)
..||+||++.+.|..+|++|.+..||+..++++++++.|. +++|+|..|+..++||..|-++|++.++ .+++---++.
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~-~~~P~l~~d~~~~tDs~~Ie~~Lee~l~-~p~~~~~~~~ 96 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPG-GKPPVLKFDEKWVTDSDKIEEFLEEKLP-PPKLPTLAPP 96 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCC-CCCCeEEeCCceeccHHHHHHHHHHhcC-CCCCcccCCH
Confidence 3499999999999999999999999999999999999997 9999999999999999999999999999 4432211233
Q ss_pred HHHHHHHHHHHhhhhcccchhhhhccC-hHHHHHHHHHHHHHHHHHHcccCC---CCcccCCCcchhhhhhhhhhhhhhh
Q 027727 91 QRAQARFWVDFIDKKMYDTSRKTWATK-GEEQEAAKKEFIEVLKTLGGELGD---KPFFGGDNFGYVDLCLIPYYCWFYS 166 (219)
Q Consensus 91 ~~a~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~l~~le~~L~~---~~~l~G~~~t~aD~~l~~~l~~~~~ 166 (219)
+.+. +...++..+..++..+ +...+.....+-+.|..|+.+|+. ++||.|+++|.||+.+++-|+.++.
T Consensus 97 E~as-------ag~diF~kF~~fi~ksk~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aDcsLlPKL~~i~v 169 (221)
T KOG1422|consen 97 ESAS-------AGSDIFAKFSAFIKKSKDAANDGLEKALLKELEKLDDYLKSPSRRKFLDGDKLTLADCSLLPKLHHIKV 169 (221)
T ss_pred HHHh-------hHHHHHHHHHHHHhCchhhccchHHHHHHHHHHHHHHHhcCccCCccccCCeeeeehhhhchhHHHHHH
Confidence 3332 2233444455554433 445566677788999999999964 7999999999999999999999986
Q ss_pred h-hhhcCccccccCchHHHHHHHHhcccchhccCCChHHHHHHHHHHHH
Q 027727 167 Y-ETFGKFSVEAECPKFIAWVTRCLQRETVAKALPDEKKVFEFVSVLRE 214 (219)
Q Consensus 167 ~-~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (219)
+ ..+.++.++.+.+.+.+|++.+.++++|..+.+..+.....+....+
T Consensus 170 a~k~yk~~~IP~~lt~V~rYl~~~ya~d~F~~tcp~d~ei~~~y~~~~~ 218 (221)
T KOG1422|consen 170 AAKHYKNFEIPASLTGVWRYLKNAYARDEFTNTCPADQEIILAYAPVAK 218 (221)
T ss_pred HHHHhcCCCCchhhhHHHHHHHHHHhHHHhhcCCchHHHHHHhhhhhhh
Confidence 4 56777888899999999999999999999999999888877766544
No 23
>PLN02907 glutamate-tRNA ligase
Probab=99.91 E-value=1.6e-23 Score=183.27 Aligned_cols=158 Identities=15% Similarity=0.216 Sum_probs=131.5
Q ss_pred CCCceEEecccCCchhHHHHHHHHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEE-eCCeeeehhHHHHHHHHhhcC
Q 027727 1 MADEVILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLI-HNGKSVCESSIIVQYIDEVWK 79 (219)
Q Consensus 1 M~~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~-~~g~~l~es~~I~~yL~~~~~ 79 (219)
|+ ++||+.+.|+ +.++.++|++.|++|+.+. .+|. |+||+|+ ++|.+|+||.||++||++.++
T Consensus 1 ~~--~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~------------~~p~-GkVPvLv~ddG~~L~ES~AIl~YLa~~~p 64 (722)
T PLN02907 1 ME--AKLSFPPDSP-PLAVIAAAKVAGVPLTIDP------------SLKS-GSAPTLLFSSGEKLTGTNVLLRYIARSAS 64 (722)
T ss_pred Ce--EEEEECCCCC-hHHHHHHHHHcCCCcEEee------------cCCC-CCCcEEEECCCCEEECHHHHHHHHHHhCC
Confidence 66 8899988764 7789999999999999874 2688 9999999 588999999999999999998
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhhhcccchhhhhccChHHHHHHHHHHHHHHHHHHcccCCCCcccCCCcchhhhhhhh
Q 027727 80 DKAPLLPYDPYQRAQARFWVDFIDKKMYDTSRKTWATKGEEQEAAKKEFIEVLKTLGGELGDKPFFGGDNFGYVDLCLIP 159 (219)
Q Consensus 80 ~~~~l~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~ 159 (219)
+..++|.++.+++++++|+.+...... ...+...++.||.+|++++||+|+++|+||+++++
T Consensus 65 -~~~L~p~d~~erAqV~qWL~~~~~~~~-----------------~~~l~~~L~~LE~~L~~rtYLvGd~lTLADIaL~~ 126 (722)
T PLN02907 65 -LPGFYGQDAFESSQVDEWLDYAPTFSS-----------------GSEFENACEYVDGYLASRTFLVGYSLTIADIAIWS 126 (722)
T ss_pred -CcCCCCCCHHHHHHHHHHHHHHhhccc-----------------HHHHHHHHHHHHHHhccCCeecCCCCCHHHHHHHH
Confidence 677999999999999999998765221 12467789999999999999999999999999999
Q ss_pred hhhhhhhhhhhcCccccccCchHHHHHHHHhcccc
Q 027727 160 YYCWFYSYETFGKFSVEAECPKFIAWVTRCLQRET 194 (219)
Q Consensus 160 ~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~ 194 (219)
.+..+.. ..........+|+|.+|++++.++|+
T Consensus 127 ~L~~~~~--~~~~~~~~~~yPnL~RW~erI~arPs 159 (722)
T PLN02907 127 GLAGSGQ--RWESLRKSKKYQNLVRWFNSISAEYS 159 (722)
T ss_pred HHHhhhh--hhhcccccccCHHHHHHHHHHHhCCC
Confidence 9865411 01122223789999999999999999
No 24
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.83 E-value=3.4e-20 Score=118.74 Aligned_cols=72 Identities=38% Similarity=0.687 Sum_probs=69.7
Q ss_pred EecccCCchhHHHHHHHHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHHhhcC
Q 027727 7 LLDFWASMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDEVWK 79 (219)
Q Consensus 7 L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~~~~~ 79 (219)
||++..||||+|+|++|+++||+|+.+.++...+.+++...||. |+||+|++||.+++||.+|++||++.++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~-~~vPvL~~~g~~l~dS~~I~~yL~~~~~ 72 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPK-GKVPVLVDDGEVLTDSAAIIEYLEERYP 72 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTT-SBSSEEEETTEEEESHHHHHHHHHHHST
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhccc-ccceEEEECCEEEeCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999988888999999998 9999999999999999999999999998
No 25
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.81 E-value=1.1e-19 Score=115.59 Aligned_cols=70 Identities=31% Similarity=0.690 Sum_probs=65.1
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEccCC---CCChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHH
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQDLF---NKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYID 75 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~ 75 (219)
++||+++.||+|++++++|+++|++|+.+.++.. .+.++|.++||. |+||+|++||.+++||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~-g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPT-GEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 4799999999999999999999999999998874 467889999999 999999999999999999999984
No 26
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.80 E-value=1.9e-19 Score=117.79 Aligned_cols=68 Identities=24% Similarity=0.313 Sum_probs=65.4
Q ss_pred cCCchhHHHHHHHHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHHhhcC
Q 027727 11 WASMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDEVWK 79 (219)
Q Consensus 11 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~~~~~ 79 (219)
..||||+++|++|.++||+|+.+.+++.+++++|.++||. |+||+|+++|.+|+||.+|++||++.++
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~-g~vPvL~~~~~~i~eS~~I~eYLde~~~ 87 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPG-TQPPFLLYNGEVKTDNNKIEEFLEETLC 87 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCC-CCCCEEEECCEEecCHHHHHHHHHHHcc
Confidence 4599999999999999999999999999989999999998 9999999999999999999999999988
No 27
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.80 E-value=2.5e-19 Score=114.12 Aligned_cols=73 Identities=36% Similarity=0.494 Sum_probs=68.9
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHHhhc
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDEVW 78 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~~~~ 78 (219)
|+||+.+.||+|++++++|+++|++|+.+.++..+..+++.+.||. |++|+|+++|..++||.+|++||++++
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPY-GTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 5899999999999999999999999999999988788999999999 999999999999999999999998864
No 28
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.80 E-value=3.9e-19 Score=113.52 Aligned_cols=73 Identities=71% Similarity=1.066 Sum_probs=68.2
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEccCCCCChhhHhhCC-CCCeecEEEeCCeeeehhHHHHHHHHhhc
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLLRMNP-VHKKIPVLIHNGKSVCESSIIVQYIDEVW 78 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p-~~~~vP~l~~~g~~l~es~~I~~yL~~~~ 78 (219)
|+||+++.||+|+++|++|.++|++|+.+.++...+.+++.+.|| . |++|+|+++|.+++||.+|++||++.+
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~-~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVH-KKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCC-CCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 589999999999999999999999999999988878899999999 5 899999999999999999999998764
No 29
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.78 E-value=1.3e-18 Score=111.04 Aligned_cols=71 Identities=28% Similarity=0.399 Sum_probs=65.7
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEccCC---CCChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHHh
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQDLF---NKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDE 76 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~~ 76 (219)
++||+++.||+|++++++|+++|++|+.+.++.. ...+++.+.||. |+||+|+++|.+++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQ-HTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcC-CCCCEEEECCEEEEcHHHHHHHHhC
Confidence 5899999999999999999999999999999865 356899999999 9999999999999999999999974
No 30
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.78 E-value=1.1e-18 Score=112.32 Aligned_cols=73 Identities=25% Similarity=0.255 Sum_probs=65.6
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEccCCC-CChhhHhhCCCCCeecEEEe--CCeeeehhHHHHHHHHhhc
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFN-KSPLLLRMNPVHKKIPVLIH--NGKSVCESSIIVQYIDEVW 78 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~--~g~~l~es~~I~~yL~~~~ 78 (219)
++||+++.||+|++++++|.++||+|+.+.++... ..+++.+.||. |+||+|++ +|.+++||.+|++||++++
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~-~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGK-VQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCC-CcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 78999999999999999999999999999887543 46789999998 99999996 4689999999999999864
No 31
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.77 E-value=1.6e-18 Score=109.80 Aligned_cols=69 Identities=33% Similarity=0.519 Sum_probs=64.7
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEEe-CCeeeehhHHHHHHH
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIH-NGKSVCESSIIVQYI 74 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~-~g~~l~es~~I~~yL 74 (219)
++||+++.||+|++++++|+++|++|+.+.++..++.+++.++||. |+||+|++ ||..++||.+|++|+
T Consensus 1 ~~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~-~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 1 PILYSFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPK-GTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred CEEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCC-CCCCEEEECCCcEEecHHHHHHhh
Confidence 3799999999999999999999999999999988778899999998 99999997 599999999999996
No 32
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.77 E-value=2.4e-18 Score=110.45 Aligned_cols=71 Identities=38% Similarity=0.457 Sum_probs=66.2
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEccCC---CCChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHHh
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQDLF---NKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDE 76 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~~ 76 (219)
++||+++.||+|+++|++|+++|++|+.+.++.. +.++++.++||. |++|+|+++|.+++||.+|++||++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~-~~vP~l~~~g~~l~es~aI~~yL~~ 75 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPF-GQIPALEDGDLKLFESRAITRYLAE 75 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHhh
Confidence 7899999999999999999999999999988865 456889999999 9999999999999999999999986
No 33
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.77 E-value=1.1e-18 Score=111.07 Aligned_cols=71 Identities=15% Similarity=0.176 Sum_probs=65.9
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHHh
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDE 76 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~~ 76 (219)
++||+++.|++|+++|++|.++|++|+.+.++.....+++..+||. |+||+|+++|.+++||.+|++||++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~ 72 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLF-GQLPCFKDGDLTLVQSNAILRHLGR 72 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCC-CCCCEEEECCEEEEcHHHHHHHHhc
Confidence 7899999999999999999999999999999875556688899998 9999999999999999999999975
No 34
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.77 E-value=3.3e-18 Score=109.78 Aligned_cols=73 Identities=23% Similarity=0.312 Sum_probs=66.8
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEccCCC---CChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHHhhc
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFN---KSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDEVW 78 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~~~~ 78 (219)
++||+++.|+++++++++|+++|++|+.+.++..+ ..+++.+.||. |+||+|+++|.+++||.+|++||++++
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPF-GKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcC-CCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 57999999999999999999999999999998653 45789999999 999999999999999999999998864
No 35
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.76 E-value=1.5e-17 Score=126.65 Aligned_cols=182 Identities=18% Similarity=0.354 Sum_probs=126.1
Q ss_pred ceEEecccCCchhHHHHHHHHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHHhhcCCC--
Q 027727 4 EVILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDEVWKDK-- 81 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~~~~~~~-- 81 (219)
+++||.+..||||.+||.+|.+.||+|++++|++..+.+- +.+-+ .+||+|..+|..+.||++|+.-|+......
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r~eI--k~Ssy-kKVPil~~~Geqm~dSsvIIs~laTyLq~~~q 166 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLRQEI--KWSSY-KKVPILLIRGEQMVDSSVIISLLATYLQDKRQ 166 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhhhhc--ccccc-ccccEEEeccceechhHHHHHHHHHHhccCCC
Confidence 5899999999999999999999999999999998743222 33454 899999977777999999988774432100
Q ss_pred -----CCCCC------------------------C-----CHHHHHHHHHHHHHhhhhcccchhhhhcc-----------
Q 027727 82 -----APLLP------------------------Y-----DPYQRAQARFWVDFIDKKMYDTSRKTWAT----------- 116 (219)
Q Consensus 82 -----~~l~p------------------------~-----~~~~~a~~~~~~~~~~~~l~~~~~~~~~~----------- 116 (219)
.++|| + +...+..-+.|-.|+++.+.-.+.+-.+.
T Consensus 167 ~l~eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletFew 246 (370)
T KOG3029|consen 167 DLGEIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETFEW 246 (370)
T ss_pred CHHHHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHHHH
Confidence 01233 0 11223345677777777664332221100
Q ss_pred -----------------------------------ChHHHHHHHHHHHHHHHHHHccc-CCCCcccCCCcchhhhhhhhh
Q 027727 117 -----------------------------------KGEEQEAAKKEFIEVLKTLGGEL-GDKPFFGGDNFGYVDLCLIPY 160 (219)
Q Consensus 117 -----------------------------------~~~~~~~~~~~l~~~l~~le~~L-~~~~~l~G~~~t~aD~~l~~~ 160 (219)
+.......++.+-++++.+-..| ++++|+.|++|++||++++.+
T Consensus 247 f~q~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgknr~flGG~kPnLaDLsvfGv 326 (370)
T KOG3029|consen 247 FSQAGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGKNRPFLGGKKPNLADLSVFGV 326 (370)
T ss_pred HHHcCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCCCCCccCCCCCchhhhhhhhh
Confidence 01111234556666777776777 678999999999999999999
Q ss_pred hhhhhhhhhhcCccccccCchHHHHHHHHhc
Q 027727 161 YCWFYSYETFGKFSVEAECPKFIAWVTRCLQ 191 (219)
Q Consensus 161 l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 191 (219)
|..+..+..+.+. -.+.++.+|+-++++
T Consensus 327 l~sm~gc~afkd~---~q~t~I~eW~~rmea 354 (370)
T KOG3029|consen 327 LRSMEGCQAFKDC---LQNTSIGEWYYRMEA 354 (370)
T ss_pred hhHhhhhhHHHHH---HhcchHHHHHHHHHH
Confidence 9998876543332 466889999999976
No 36
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.75 E-value=4.5e-18 Score=112.40 Aligned_cols=73 Identities=33% Similarity=0.462 Sum_probs=67.5
Q ss_pred CCceEEecccCCchhHHHHHHHHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEEeC-CeeeehhHHHHHHHH
Q 027727 2 ADEVILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHN-GKSVCESSIIVQYID 75 (219)
Q Consensus 2 ~~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~-g~~l~es~~I~~yL~ 75 (219)
+.+++||+++.||+|++++++|.++|++|+.+.++.....+++.+.||. +++|+|+++ |.+++||.+|++||+
T Consensus 16 ~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~-~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 16 PGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQ-GKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred CCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCC-CCcCEEEECCCCEEECHHHHHHhhC
Confidence 4679999999999999999999999999999999887767789999998 999999976 899999999999985
No 37
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.75 E-value=6.4e-18 Score=108.13 Aligned_cols=70 Identities=23% Similarity=0.338 Sum_probs=65.2
Q ss_pred EEecccCCchhHHHHHHHHHhCCCceeEEccCC--CCChhhHhhCCCCCeecEEEe-CCeeeehhHHHHHHHHh
Q 027727 6 ILLDFWASMFGIRVRIALAEKGVKYEYKEQDLF--NKSPLLLRMNPVHKKIPVLIH-NGKSVCESSIIVQYIDE 76 (219)
Q Consensus 6 ~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~--~~~~~~~~~~p~~~~vP~l~~-~g~~l~es~~I~~yL~~ 76 (219)
+||+++.||++++++++|+++|++|+.+.++.. ++.++|.++||. |++|+|++ +|.+++||.+|++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~-~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPL-GKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCC-CCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 799999999999999999999999999999876 567899999999 99999996 68999999999999976
No 38
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.75 E-value=1.1e-17 Score=108.71 Aligned_cols=73 Identities=32% Similarity=0.541 Sum_probs=66.8
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEccCC---CCChhhHhhCCCCCeecEEEeC---CeeeehhHHHHHHHHhhc
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQDLF---NKSPLLLRMNPVHKKIPVLIHN---GKSVCESSIIVQYIDEVW 78 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~---g~~l~es~~I~~yL~~~~ 78 (219)
++||+++. |+|++++++|+++|++|+.+.++.. ..+++|.+.||. |+||+|+++ |.+|+||.+|++||++++
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~ 79 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPN-GRIPAIVDHNGTPLTVFESGAILLYLAEKY 79 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcC-CCCCEEEeCCCCceEEEcHHHHHHHHHHHh
Confidence 78999875 9999999999999999999999864 467899999998 999999986 889999999999999988
Q ss_pred C
Q 027727 79 K 79 (219)
Q Consensus 79 ~ 79 (219)
+
T Consensus 80 ~ 80 (81)
T cd03048 80 D 80 (81)
T ss_pred C
Confidence 6
No 39
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.74 E-value=6.8e-18 Score=107.48 Aligned_cols=70 Identities=31% Similarity=0.479 Sum_probs=65.1
Q ss_pred eEEecccCCchhHHHHHHHHH--hCCCceeEEccCCCCChhhHhhCCCCCeecEEE-eCCeeeehhHHHHHHHH
Q 027727 5 VILLDFWASMFGIRVRIALAE--KGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLI-HNGKSVCESSIIVQYID 75 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~--~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~-~~g~~l~es~~I~~yL~ 75 (219)
++||+++.||+|+++|++|.+ +|++|+.+.++...+.+++.+.||. +++|+|+ +||..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPL-GKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCC-CCCCEEEECCCCEEECHHHHHhhhC
Confidence 589999999999999999999 8999999999877778999999998 9999998 58899999999999984
No 40
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.74 E-value=9.3e-18 Score=106.78 Aligned_cols=70 Identities=34% Similarity=0.570 Sum_probs=64.7
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEccCC---CCChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHH
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQDLF---NKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYID 75 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~ 75 (219)
++||+++.||+|++++++|.++|++|+.+.++.. ...+++.+.||. |++|+|+++|.+++||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPN-GEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999864 367889999998 999999999999999999999984
No 41
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=99.74 E-value=2.2e-17 Score=116.28 Aligned_cols=122 Identities=49% Similarity=0.889 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhhccChHHHHHHHHHHHHHHHHHHcccCCCCcccCCCcchhhhhhhhhhhhhhhhhh
Q 027727 90 YQRAQARFWVDFIDKKMYDTSRKTWATKGEEQEAAKKEFIEVLKTLGGELGDKPFFGGDNFGYVDLCLIPYYCWFYSYET 169 (219)
Q Consensus 90 ~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~ 169 (219)
.++++++.|+.+.++.+.+.+...+...++..+.....+.+.++.||++|++++|++|+++|+||+++++.+.++..+..
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~~~~~~~~~~~~ 81 (126)
T cd03185 2 YERAVARFWAAFIDDKLFPAGRKVLAAKGEEREKAKEEALEALKVLEEELGGKPFFGGDTIGYVDIALGSFLGWFRAYEE 81 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 46899999999999888877666555445566678889999999999999888999999999999999999988765432
Q ss_pred hcCcc--ccccCchHHHHHHHHhcccchhccCCChHHHHHHHHH
Q 027727 170 FGKFS--VEAECPKFIAWVTRCLQRETVAKALPDEKKVFEFVSV 211 (219)
Q Consensus 170 ~~~~~--~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (219)
..+.. ....+|++++|+++++++|+++++.+..+...+.+++
T Consensus 82 ~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~ 125 (126)
T cd03185 82 VGGVKLLDEEKTPLLAAWAERFLELEAVKEVLPDRDKLVEFAKA 125 (126)
T ss_pred HcCccccCcccCchHHHHHHHHHhccHHHHhCCCHHHHHHHHHh
Confidence 33333 1367999999999999999999999998877665543
No 42
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.74 E-value=5.8e-18 Score=107.50 Aligned_cols=71 Identities=28% Similarity=0.350 Sum_probs=63.9
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEccCCC-CChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHHh
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFN-KSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDE 76 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~~ 76 (219)
++||+++.|++|+++|++|+++|++|+.+.++... ..+++.++||. |++|+|+++|.+++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~-~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPF-GQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcC-CCCCEEEECCEEEEecHHHHHHhhC
Confidence 58999999999999999999999999999988753 33458899999 9999999999999999999999964
No 43
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.74 E-value=1.3e-17 Score=106.22 Aligned_cols=70 Identities=27% Similarity=0.352 Sum_probs=64.2
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEccCC---CCChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHH
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQDLF---NKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYID 75 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~ 75 (219)
++||+++.||++++++++|+++|++|+.+.++.. ...+++.++||. |+||+|+++|.+|+||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~-~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPN-GRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCC-CCCCEEEECCEEEECHHHHHHHhC
Confidence 5799999999999999999999999999988753 356889999999 999999999999999999999984
No 44
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.73 E-value=1.2e-16 Score=121.14 Aligned_cols=175 Identities=22% Similarity=0.300 Sum_probs=131.1
Q ss_pred eEEecccC-------CchhHHHHHHHHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHHhh
Q 027727 5 VILLDFWA-------SMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDEV 77 (219)
Q Consensus 5 ~~L~~~~~-------s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~~~ 77 (219)
+-||.++. ||||.++..+|+..+|||+.+.-.+. ..++. |++|.++-||..+.||..|..+|.+.
T Consensus 46 VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~~-------~rSr~-G~lPFIELNGe~iaDS~~I~~~L~~h 117 (281)
T KOG4244|consen 46 VYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSLK-------RRSRN-GTLPFIELNGEHIADSDLIEDRLRKH 117 (281)
T ss_pred EEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccce-------eeccC-CCcceEEeCCeeccccHHHHHHHHHH
Confidence 55666543 99999999999999999998865432 34666 89999999999999999999999998
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhhhhcccchhh----------------------------hh-----ccC-------
Q 027727 78 WKDKAPLLPYDPYQRAQARFWVDFIDKKMYDTSRK----------------------------TW-----ATK------- 117 (219)
Q Consensus 78 ~~~~~~l~p~~~~~~a~~~~~~~~~~~~l~~~~~~----------------------------~~-----~~~------- 117 (219)
+. -+..+ ++.++++.+.....++.++...... .+ .++
T Consensus 118 f~-~~~~L--~~e~~a~s~Al~rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~r~~g 194 (281)
T KOG4244|consen 118 FK-IPDDL--SAEQRAQSRALSRMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYKRSTG 194 (281)
T ss_pred cC-CCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHhhc
Confidence 88 33323 4567777777777777655322111 11 000
Q ss_pred ---hHHHHHHHHHHHHHHHHHHcccCCCCcccCCCcchhhhhhhhhhhhhhhhhhhcCc--cccccCchHHHHHHHHhc
Q 027727 118 ---GEEQEAAKKEFIEVLKTLGGELGDKPFFGGDNFGYVDLCLIPYYCWFYSYETFGKF--SVEAECPKFIAWVTRCLQ 191 (219)
Q Consensus 118 ---~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~--~~~~~~p~l~~~~~~~~~ 191 (219)
+-..++..+.+.+-|+.++..|++++||.|+++|-+|+++|+.|..+.. +..... -+.+++|+|.+|++|+++
T Consensus 195 ~IG~f~~~Ei~ell~rDlr~i~~~Lg~KkflfGdkit~~DatvFgqLa~v~Y-P~~~~i~d~le~d~p~l~eYceRIr~ 272 (281)
T KOG4244|consen 195 AIGDFESAEIDELLHRDLRAISDYLGDKKFLFGDKITPADATVFGQLAQVYY-PFRSHISDLLEGDFPNLLEYCERIRK 272 (281)
T ss_pred cccCcCHHHHHHHHHHHHHHHHHHhCCCccccCCCCCcceeeehhhhhheec-cCCCcHHHHHhhhchHHHHHHHHHHH
Confidence 1123456777899999999999999999999999999999999988764 211111 134999999999999986
No 45
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.73 E-value=2.6e-17 Score=105.54 Aligned_cols=73 Identities=29% Similarity=0.423 Sum_probs=66.2
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEccCC---CCChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHHhhcC
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQDLF---NKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDEVWK 79 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~~~~~ 79 (219)
++||+++. +++++++++|.++|++|+.+.++.. .+.+++.+.||. +++|+|+++|.+++||.+|++||++.++
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPL-GKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCC-CCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 57998875 6899999999999999999999864 567899999998 9999999999999999999999998764
No 46
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.72 E-value=2.4e-17 Score=104.38 Aligned_cols=70 Identities=26% Similarity=0.310 Sum_probs=61.0
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEEeC-CeeeehhHHHHHHHHh
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHN-GKSVCESSIIVQYIDE 76 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~-g~~l~es~~I~~yL~~ 76 (219)
|+||++..||+|+|+|++|.++|++|+.+.++... .....+.+|. ++||+|+++ |.+++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~-~~~~~~~~~~-~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDD-EATPIRMIGA-KQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCc-hHHHHHhcCC-CccCEEEeCCCeEeehHHHHHHHHhC
Confidence 57999999999999999999999999999887543 2344578998 999999975 8999999999999974
No 47
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.72 E-value=2.1e-17 Score=105.33 Aligned_cols=70 Identities=37% Similarity=0.506 Sum_probs=63.7
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEccCC---CCChhhHhhCCCCCeecEEE-eCCeeeehhHHHHHHHH
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQDLF---NKSPLLLRMNPVHKKIPVLI-HNGKSVCESSIIVQYID 75 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~-~~g~~l~es~~I~~yL~ 75 (219)
++||+++.||+|+++|++|.++|++|+.+.++.. ...+++.+.||. +++|+|+ ++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPA-GTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCC-CCCCEEEeCCCCEEecHHHHHHHhC
Confidence 5899999999999999999999999999998864 356789999998 9999998 57889999999999985
No 48
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.72 E-value=4e-17 Score=105.01 Aligned_cols=73 Identities=29% Similarity=0.443 Sum_probs=65.2
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEccCCC---CChhhHhhCCCCCeecEEEeC-CeeeehhHHHHHHHHhhcC
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFN---KSPLLLRMNPVHKKIPVLIHN-GKSVCESSIIVQYIDEVWK 79 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~vP~l~~~-g~~l~es~~I~~yL~~~~~ 79 (219)
++||+++.+ ++++++++|.++|++|+.+.++... ..+++.++||. |++|+|+++ |.+++||.+|++||++.+|
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~-~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPK-GQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCC-CCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 579998865 6999999999999999999988753 57899999998 999999976 8999999999999998875
No 49
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.72 E-value=3.5e-17 Score=104.14 Aligned_cols=70 Identities=37% Similarity=0.638 Sum_probs=64.8
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEccCC---CCChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHH
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQDLF---NKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYID 75 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~ 75 (219)
|+||+++.|++++++|++|+++|++|+.+.++.. ...+++.+.||. |++|+|+++|.+++||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQ-GLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999864 456899999998 999999999999999999999984
No 50
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.2e-16 Score=114.04 Aligned_cols=179 Identities=17% Similarity=0.189 Sum_probs=130.1
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEE-eCCeeeehhHHHHHHHHhhcCCCCC
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLI-HNGKSVCESSIIVQYIDEVWKDKAP 83 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~-~~g~~l~es~~I~~yL~~~~~~~~~ 83 (219)
|+||-+.+||||.|+|+..-.+|||++......++..--. ..-.. .+||+|+ ++|..+.||..|.+|+++..+ ++-
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~-rmiG~-KqVPiL~Kedg~~m~ESlDIV~y~d~~~~-~~~ 77 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPI-RMIGQ-KQVPILQKEDGRAMPESLDIVHYVDELDG-KPL 77 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccChh-hhhcc-cccceEEccccccchhhhHHHHHHHHhcC-chh
Confidence 5799999999999999999999999999887766422111 33333 6899999 789999999999999999988 333
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhcccchhhhh-----------------ccCh-----------HHHHHHHHHHHHHHHHH
Q 027727 84 LLPYDPYQRAQARFWVDFIDKKMYDTSRKTW-----------------ATKG-----------EEQEAAKKEFIEVLKTL 135 (219)
Q Consensus 84 l~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~-----------------~~~~-----------~~~~~~~~~l~~~l~~l 135 (219)
+-. ..+..+..|+..+.........+.+ ..+. ........++...++.+
T Consensus 78 lt~---~~~pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~~dl~~l 154 (215)
T COG2999 78 LTG---KVRPAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQADLRAL 154 (215)
T ss_pred hcc---CcCHHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHHHHHHHH
Confidence 322 2244455666555544433333322 1111 12456678888899999
Q ss_pred HcccCCCCcccCCCcchhhhhhhhhhhhhhhhhhhcCccccccCchHHHHHHHHhcccchh
Q 027727 136 GGELGDKPFFGGDNFGYVDLCLIPYYCWFYSYETFGKFSVEAECPKFIAWVTRCLQRETVA 196 (219)
Q Consensus 136 e~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~ 196 (219)
+..+.+.. -+.+.+|+-|+.+|+.|..+.. ..|..|+ .++..|.+++.+.-.+.
T Consensus 155 ~~Li~~~s-~~n~~l~~ddi~vFplLRnlt~---v~gi~wp---s~v~dy~~~msektqV~ 208 (215)
T COG2999 155 DKLIVGPS-AVNGELSEDDILVFPLLRNLTL---VAGIQWP---SRVADYRDNMSEKTQVN 208 (215)
T ss_pred HHHhcCcc-hhccccchhhhhhhHHhcccee---cccCCCc---HHHHHHHHHHHHhhCcc
Confidence 99886655 4446799999999999998876 5677886 67999999998765543
No 51
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.70 E-value=5.9e-17 Score=102.11 Aligned_cols=65 Identities=46% Similarity=0.697 Sum_probs=56.4
Q ss_pred CCchhHHHHHHHHHhCCCceeEEccC----CCCChhhHhhCCCCCeecEEEe-CCeeeehhHHHHHHHHhh
Q 027727 12 ASMFGIRVRIALAEKGVKYEYKEQDL----FNKSPLLLRMNPVHKKIPVLIH-NGKSVCESSIIVQYIDEV 77 (219)
Q Consensus 12 ~s~~~~~v~~~l~~~gi~~~~~~v~~----~~~~~~~~~~~p~~~~vP~l~~-~g~~l~es~~I~~yL~~~ 77 (219)
.|||++|++++|+++|++|+...+.. ..+++++...||. |+||+|++ +|.+++||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~-~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPR-GKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT--SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcC-eEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 49999999999999999999988843 2456899999998 99999996 889999999999999874
No 52
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.70 E-value=5.4e-17 Score=104.38 Aligned_cols=72 Identities=24% Similarity=0.437 Sum_probs=62.5
Q ss_pred ceEEecccCCchhHHHHHHHHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEEeC----CeeeehhHHHHHHHHhhc
Q 027727 4 EVILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHN----GKSVCESSIIVQYIDEVW 78 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~----g~~l~es~~I~~yL~~~~ 78 (219)
+++||+++.||+|++++++|.++|++|+.+.++.... ++ ...||. ++||+|+++ |.+++||.+|++||++..
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~~-~~-~~~~~~-~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVSR-KE-IKWSSY-KKVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchhH-HH-HHHhCC-CccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 4899999999999999999999999999998876432 23 366998 999999954 789999999999999864
No 53
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.69 E-value=1.3e-16 Score=103.05 Aligned_cols=72 Identities=21% Similarity=0.266 Sum_probs=62.5
Q ss_pred ceEEecccCCchhHHHHHHHHHhCCCceeEEccCCCCChhhHhh-----CCCCCeecEEEeCCeeeehhHHHHHHHHhhc
Q 027727 4 EVILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLLRM-----NPVHKKIPVLIHNGKSVCESSIIVQYIDEVW 78 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~-----~p~~~~vP~l~~~g~~l~es~~I~~yL~~~~ 78 (219)
+++||+++.|+.+++++++|+++|++|+.+.++.. +++.+. .|. |+||+|++||.+|+||.||++||++++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~---~~~~~~~~~~~~~~-g~vP~L~~~g~~l~ES~AI~~YL~~~~ 76 (79)
T cd03077 1 KPVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA---EDLEKLKKDGSLMF-QQVPMVEIDGMKLVQTRAILNYIAGKY 76 (79)
T ss_pred CCEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH---HHHHhhccccCCCC-CCCCEEEECCEEEeeHHHHHHHHHHHc
Confidence 46899999999999999999999999999988753 333333 358 899999999999999999999999988
Q ss_pred C
Q 027727 79 K 79 (219)
Q Consensus 79 ~ 79 (219)
+
T Consensus 77 ~ 77 (79)
T cd03077 77 N 77 (79)
T ss_pred C
Confidence 6
No 54
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.69 E-value=9.5e-17 Score=104.32 Aligned_cols=73 Identities=22% Similarity=0.236 Sum_probs=62.2
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEccCCC----CChhhHh-----hCCCCCeecEEEeCCeeeehhHHHHHHHH
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFN----KSPLLLR-----MNPVHKKIPVLIHNGKSVCESSIIVQYID 75 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~----~~~~~~~-----~~p~~~~vP~l~~~g~~l~es~~I~~yL~ 75 (219)
.+||++..++.|+++|++|+++|++|+.+.+++.. ..+++.. .+|+ |+||+|++||.+++||.||++||+
T Consensus 1 ~~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~-g~vP~L~~~g~~l~ES~AIl~YLa 79 (82)
T cd03075 1 PTLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDF-PNLPYYIDGDVKLTQSNAILRYIA 79 (82)
T ss_pred CEEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcC-CCCCEEEECCEEEeehHHHHHHHh
Confidence 37899999999999999999999999999998753 1244542 2298 999999999999999999999998
Q ss_pred hhc
Q 027727 76 EVW 78 (219)
Q Consensus 76 ~~~ 78 (219)
+++
T Consensus 80 ~~~ 82 (82)
T cd03075 80 RKH 82 (82)
T ss_pred hcC
Confidence 764
No 55
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.69 E-value=2.3e-16 Score=113.41 Aligned_cols=125 Identities=18% Similarity=0.181 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhh-ccChHHHHHHHHHHHHHHHHHHcccCCCCcccCCCcchhhhhhhhhhhhhhhhh
Q 027727 90 YQRAQARFWVDFIDKKMYDTSRKTW-ATKGEEQEAAKKEFIEVLKTLGGELGDKPFFGGDNFGYVDLCLIPYYCWFYSYE 168 (219)
Q Consensus 90 ~~~a~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~ 168 (219)
..+++++.|++|..+.+.+.+.... ..+++..+.....+.+.|+.||++|++++|++|+++|+||+++++.+.++..+.
T Consensus 3 ~~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~LE~~L~~~~yl~Gd~~TlADi~l~~~l~~~~~~~ 82 (142)
T cd03190 3 ELRSEIDELNEWIYDNINNGVYKAGFATTQEAYDEAVDELFEALDRLEELLSDRRYLLGDRLTEADIRLFTTLIRFDAVY 82 (142)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHccCCeeeCCCccHHHHHHHHHHHHHHHHh
Confidence 3588899999999999887765553 334666778888999999999999998999999999999999999987764321
Q ss_pred -hhc--CccccccCchHHHHHHHHhcccchhccCCChHHHHHHHHHHHH
Q 027727 169 -TFG--KFSVEAECPKFIAWVTRCLQRETVAKALPDEKKVFEFVSVLRE 214 (219)
Q Consensus 169 -~~~--~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (219)
... +......+|+|.+|++++.++|+++++....+...++++.+++
T Consensus 83 ~~~~~~~~~~~~~~P~L~~w~~r~~~~P~~k~~~~~~~~~~~~~~~~~~ 131 (142)
T cd03190 83 VQHFKCNLKRIRDYPNLWNYLRRLYQNPGVAETTNFDHIKQHYYGSHFP 131 (142)
T ss_pred hhhcccccchhhhCchHHHHHHHHhcCchHhhhcCHHHHHHHHHhhcCC
Confidence 011 1122368999999999999999999999988888888888754
No 56
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.68 E-value=2.9e-16 Score=107.45 Aligned_cols=105 Identities=23% Similarity=0.374 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhhccChHHHHHHHHHHHHHHHHHHcccCCCCcccCCCcchhhhhhhhhhhhhhhhhh
Q 027727 90 YQRAQARFWVDFIDKKMYDTSRKTWATKGEEQEAAKKEFIEVLKTLGGELGDKPFFGGDNFGYVDLCLIPYYCWFYSYET 169 (219)
Q Consensus 90 ~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~ 169 (219)
.++++++.|+.++++.+.+.+.......++..+.....+.+.++.||++|++++|++|+++|+||+++++.+.++..
T Consensus 2 ~~ra~~r~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~~~--- 78 (107)
T cd03186 2 VARARSRLLMHRIEQDWYPLVDTIEKGRKKEAEKARKELRESLLALAPVFAHKPYFMSEEFSLVDCALAPLLWRLPA--- 78 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCcHHHHHHHHHHHHHHH---
Confidence 47899999999999988877665554445566778889999999999999999999999999999999999865542
Q ss_pred hcCccccccCchHHHHHHHHhcccchhcc
Q 027727 170 FGKFSVEAECPKFIAWVTRCLQRETVAKA 198 (219)
Q Consensus 170 ~~~~~~~~~~p~l~~~~~~~~~~~~~~~~ 198 (219)
.+..+...+|++++|++++.++|+++..
T Consensus 79 -~~~~~~~~~p~l~~w~~~~~~rpa~~~~ 106 (107)
T cd03186 79 -LGIELPKQAKPLKDYMERVFARDSFQKS 106 (107)
T ss_pred -cCCCCcccchHHHHHHHHHHCCHHHHHh
Confidence 2433335899999999999999999875
No 57
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.68 E-value=2.3e-16 Score=100.89 Aligned_cols=67 Identities=28% Similarity=0.486 Sum_probs=60.6
Q ss_pred eEEeccc-------CCchhHHHHHHHHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHHhh
Q 027727 5 VILLDFW-------ASMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDEV 77 (219)
Q Consensus 5 ~~L~~~~-------~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~~~ 77 (219)
++||+++ .||+|++++++|+++|++|+.+.++.. +.||. |++|+|+++|.+++||.+|++||+++
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~-------~~~p~-g~vPvl~~~g~~l~eS~~I~~yL~~~ 73 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA-------KRSPK-GKLPFIELNGEKIADSELIIDHLEEK 73 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc-------cCCCC-CCCCEEEECCEEEcCHHHHHHHHHHH
Confidence 6899887 589999999999999999999887642 67998 99999999999999999999999998
Q ss_pred cC
Q 027727 78 WK 79 (219)
Q Consensus 78 ~~ 79 (219)
++
T Consensus 74 ~~ 75 (75)
T cd03080 74 YG 75 (75)
T ss_pred cC
Confidence 74
No 58
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=9.9e-16 Score=116.72 Aligned_cols=196 Identities=20% Similarity=0.239 Sum_probs=144.2
Q ss_pred CceEEecccCCchhHHHHHHHHHhCCC-ceeE-EccCC--CCCh----------------------hhHhhCCCC---Ce
Q 027727 3 DEVILLDFWASMFGIRVRIALAEKGVK-YEYK-EQDLF--NKSP----------------------LLLRMNPVH---KK 53 (219)
Q Consensus 3 ~~~~L~~~~~s~~~~~v~~~l~~~gi~-~~~~-~v~~~--~~~~----------------------~~~~~~p~~---~~ 53 (219)
.+..||.+-.|||++|..++-++||++ +-.+ .|.+. .+.. -|....|.+ -+
T Consensus 50 GRYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvT 129 (324)
T COG0435 50 GRYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVT 129 (324)
T ss_pred CeEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCcee
Confidence 568899999999999999999999995 3222 22211 1111 112223310 26
Q ss_pred ecEEEeC--C-eeeehhHHHHHHHHhhcC----CCCCCCCCCHHHHHHHHHHHHHhhhhcccc-hhhhhccChHHHHHHH
Q 027727 54 IPVLIHN--G-KSVCESSIIVQYIDEVWK----DKAPLLPYDPYQRAQARFWVDFIDKKMYDT-SRKTWATKGEEQEAAK 125 (219)
Q Consensus 54 vP~l~~~--g-~~l~es~~I~~yL~~~~~----~~~~l~p~~~~~~a~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~ 125 (219)
||||-|. . .+-.||..|++-+...+. ....++|++ .+.+++.+..++-..+..- +...+...+++-++..
T Consensus 130 VPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~--Lr~eId~~n~~Iy~~vNNGVYk~GFA~tq~aYeea~ 207 (324)
T COG0435 130 VPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPEA--LRTEIDELNKWIYDTVNNGVYKAGFATTQEAYEEAV 207 (324)
T ss_pred EEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCHH--HHHHHHHHHhhhcccccCceeeecccchHHHHHHHH
Confidence 9999863 3 356899999999977654 135688854 5788888888777665332 2234555688889999
Q ss_pred HHHHHHHHHHHcccCCCCcccCCCcchhhhhhhhhhhhhhhhhhhcCc--cc--cccCchHHHHHHHHhcccchhccCCC
Q 027727 126 KEFIEVLKTLGGELGDKPFFGGDNFGYVDLCLIPYYCWFYSYETFGKF--SV--EAECPKFIAWVTRCLQRETVAKALPD 201 (219)
Q Consensus 126 ~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~--~~--~~~~p~l~~~~~~~~~~~~~~~~~~~ 201 (219)
..+-..|+.||..|++++||+|+++|-||+-+++.|-++..+- ...+ ++ ..+||+|..|...+.+.|.++++..-
T Consensus 208 ~~lF~~Ld~lE~~L~~~ryl~Gd~lTEAD~RLftTlvRFD~VY-vgHFKCN~~rI~dypnL~~yLr~LYq~pg~~~T~df 286 (324)
T COG0435 208 KKLFEALDKLEQILSERRYLTGDQLTEADIRLFTTLVRFDPVY-VGHFKCNLRRIRDYPNLWGYLRDLYQLPGFAETVDF 286 (324)
T ss_pred HHHHHHHHHHHHHhhcCeeeccccchHhhhhhhheeEeecceE-EeeeecccchhhcCchHHHHHHHHhcCcccccccch
Confidence 9999999999999999999999999999999999998887531 1122 22 27799999999999999999998643
No 59
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.66 E-value=4.3e-16 Score=101.85 Aligned_cols=67 Identities=22% Similarity=0.343 Sum_probs=58.5
Q ss_pred cCCchhHHHHHHHHHhCCCceeEEccCCCC---ChhhHhhCCCCCeecEEEeC-CeeeehhHHHHHHHHhhcC
Q 027727 11 WASMFGIRVRIALAEKGVKYEYKEQDLFNK---SPLLLRMNPVHKKIPVLIHN-GKSVCESSIIVQYIDEVWK 79 (219)
Q Consensus 11 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~---~~~~~~~~p~~~~vP~l~~~-g~~l~es~~I~~yL~~~~~ 79 (219)
+.||+|+++|++|.++|++|+.+.++.... .+++ +.||. |+||+|+++ |.+++||.+|++||+++++
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~-~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGF-YTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCC-ceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 569999999999999999999999886532 2344 78998 999999988 8999999999999999874
No 60
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.66 E-value=5.8e-16 Score=99.19 Aligned_cols=70 Identities=37% Similarity=0.547 Sum_probs=58.4
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEccCC---CCChhhHhhCCCCCeecEEEeC-CeeeehhHHHHHHHHh
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQDLF---NKSPLLLRMNPVHKKIPVLIHN-GKSVCESSIIVQYIDE 76 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~-g~~l~es~~I~~yL~~ 76 (219)
+++|.. .+++.++|++|+++|++|+.+.++.. +++++|.+.||..|++|+|+++ |.+++||.||++||++
T Consensus 3 l~l~~~--~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 3 LTLYNG--RGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEESS--STTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred EEEECC--CCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 455554 55999999999999999999999975 3459999999952699999998 9999999999999985
No 61
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.64 E-value=1.1e-15 Score=105.87 Aligned_cols=109 Identities=17% Similarity=0.263 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHHHHhhhhcccchhhhhccC---hHHHHHHHHHHHHHHHHHHcccCCCCcccCCCcchhhhhhhhhhhhh
Q 027727 88 DPYQRAQARFWVDFIDKKMYDTSRKTWATK---GEEQEAAKKEFIEVLKTLGGELGDKPFFGGDNFGYVDLCLIPYYCWF 164 (219)
Q Consensus 88 ~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~ 164 (219)
++..++++++|+.+.+..+.+.+....... .+..+.....+.+.++.||++|++++|++|+++|+||+++++.+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~le~~L~~~~yl~Gd~~tlADi~l~~~l~~~ 82 (115)
T cd03196 3 DPAALKEMLALIAENDNEFKHHLDRYKYADRYPEESEEEYRQQAEAFLKDLEARLQQHSYLLGDKPSLADWAIFPFVRQF 82 (115)
T ss_pred chHHHHHHHHHHHHcchhhHHHHHhccchhhcCcccHHHHHHHHHHHHHHHHHHHccCCccCCCCccHHHHHHHHHHHHH
Confidence 688999999999999999988777644321 23467788899999999999999889999999999999999988765
Q ss_pred hhhhhhcCccccccCchHHHHHHHHhcccchhcc
Q 027727 165 YSYETFGKFSVEAECPKFIAWVTRCLQRETVAKA 198 (219)
Q Consensus 165 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~ 198 (219)
.... ..+.. ..++|+|++|++++.++|+++++
T Consensus 83 ~~~~-~~~~~-~~~~P~L~~w~~r~~~rpa~~~~ 114 (115)
T cd03196 83 AHVD-PKWFD-QSPYPRLRRWLNGFLASPLFSKI 114 (115)
T ss_pred HHhh-hcccC-cccCHHHHHHHHHHHcChHHHhh
Confidence 4321 11222 27899999999999999999875
No 62
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=99.64 E-value=1.2e-15 Score=107.09 Aligned_cols=118 Identities=24% Similarity=0.395 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHhhhhcccchhhhhccChHHHHHHHHHHHHHHHHHHcccCC--CCcccCCCcchhhhhhhhhhhhhhhhh
Q 027727 91 QRAQARFWVDFIDKKMYDTSRKTWATKGEEQEAAKKEFIEVLKTLGGELGD--KPFFGGDNFGYVDLCLIPYYCWFYSYE 168 (219)
Q Consensus 91 ~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~--~~~l~G~~~t~aD~~l~~~l~~~~~~~ 168 (219)
+|++.+.|+.+++..+.+.+ ..+.. ++..+...+.+.+.++.+|+.|++ ++|++|+++|+||+++++.+.++..++
T Consensus 2 ~ra~~r~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~~~~~~~~~ 79 (124)
T cd03184 2 EKAQQKLLLERFSKVVSAFY-KLLGA-PSDREEKKAELRSALENLEEELTKRGTPFFGGDSPGMVDYMIWPWFERLEALK 79 (124)
T ss_pred hHHHHHHHHHHHhhhhHHHH-HHHhc-cccchhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccHHHHHhhHHHHHHHHHH
Confidence 58899999999975444433 33333 556678888999999999999974 899999999999999999998876543
Q ss_pred hhcCcc-ccccCchHHHHHHHHhcccchhccCCChHHHHHHHH
Q 027727 169 TFGKFS-VEAECPKFIAWVTRCLQRETVAKALPDEKKVFEFVS 210 (219)
Q Consensus 169 ~~~~~~-~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (219)
...+.. ....+|+|++|++++.++|++++++.+.+...++++
T Consensus 80 ~~~~~~~~~~~~p~l~~w~~r~~~~p~v~~~~~~~~~~~~~~~ 122 (124)
T cd03184 80 LLLGYEFPLDRFPKLKKWMDAMKEDPAVQAFYTDTEIHAEFLK 122 (124)
T ss_pred hhccccCCcccChHHHHHHHHhccChHHHHHhCCHHHHHHHHh
Confidence 222211 137899999999999999999999999888777765
No 63
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.63 E-value=1.7e-15 Score=96.31 Aligned_cols=66 Identities=26% Similarity=0.444 Sum_probs=59.8
Q ss_pred cccCCchhHHHHHHHHHhCCCceeEEccCCC--CChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHH
Q 027727 9 DFWASMFGIRVRIALAEKGVKYEYKEQDLFN--KSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYID 75 (219)
Q Consensus 9 ~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~--~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~ 75 (219)
....|+++++++++|+++|++|+.+.++... ..++|.++||. |++|+|+++|.+++||.+|++||+
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPT-GKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCC-CcCCEEEECCEEEEcHHHHHHHhC
Confidence 4567999999999999999999999998753 46899999999 999999999999999999999984
No 64
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=99.62 E-value=2.6e-15 Score=103.63 Aligned_cols=104 Identities=23% Similarity=0.421 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhhhhcccchhhhhccC---------hHHHHHHHHHHHHHHHHHHcccCCCCcccCCCcchhhhhhhhhh
Q 027727 91 QRAQARFWVDFIDKKMYDTSRKTWATK---------GEEQEAAKKEFIEVLKTLGGELGDKPFFGGDNFGYVDLCLIPYY 161 (219)
Q Consensus 91 ~~a~~~~~~~~~~~~l~~~~~~~~~~~---------~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l 161 (219)
+++++++|+.+.++.+.+.+...+... +...+.....+.+.++.||+.|++++|++|+++|+|||++++.+
T Consensus 2 ~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aDi~~~~~~ 81 (114)
T cd03188 2 ERARLLEWLNFLSSELHKAFGPLFYPARWATDEAAQEEVKAAARERLAARLAYLDAQLAGGPYLLGDRFSVADAYLFVVL 81 (114)
T ss_pred cHHHHHHHHHHHhhhhchhhhhcccccccccChhhHHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCcchHHHHHHHHH
Confidence 578999999999999887765443321 33356677889999999999999889999999999999999998
Q ss_pred hhhhhhhhhcCccccccCchHHHHHHHHhcccchhccC
Q 027727 162 CWFYSYETFGKFSVEAECPKFIAWVTRCLQRETVAKAL 199 (219)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~ 199 (219)
.++.. .+... .++|++.+|++++.++|++++++
T Consensus 82 ~~~~~----~~~~~-~~~p~l~~w~~~~~~~p~~k~~~ 114 (114)
T cd03188 82 RWAPG----VGLDL-SDWPNLAAYLARVAARPAVQAAL 114 (114)
T ss_pred HHHhh----cCCCh-hhChHHHHHHHHHHhCHHhHhhC
Confidence 87653 22333 57999999999999999998753
No 65
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.61 E-value=3.1e-15 Score=93.84 Aligned_cols=70 Identities=39% Similarity=0.540 Sum_probs=63.0
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEccCCCCCh-hhHhhCCCCCeecEEEeCCeeeehhHHHHHHHH
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFNKSP-LLLRMNPVHKKIPVLIHNGKSVCESSIIVQYID 75 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~-~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~ 75 (219)
++||+++.||+|++++++|+++|++|+.+.++...... ++.+.+|. +++|+|+++|.+++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPL-GKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 57999999999999999999999999999998764333 47889998 999999999999999999999984
No 66
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.58 E-value=7.4e-15 Score=93.12 Aligned_cols=64 Identities=25% Similarity=0.327 Sum_probs=57.0
Q ss_pred EEeccc-------CCchhHHHHHHHHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHHhh
Q 027727 6 ILLDFW-------ASMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDEV 77 (219)
Q Consensus 6 ~L~~~~-------~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~~~ 77 (219)
+||.++ .||+|++++++|+++|++|+.+.++... .||. |+||+|+++|..++||.+|++||+++
T Consensus 2 ~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~-------~~p~-g~vP~l~~~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 2 ELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNPW-------RSPT-GKLPFLELNGEKIADSEKIIEYLKKK 72 (72)
T ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCcc-------cCCC-cccCEEEECCEEEcCHHHHHHHHhhC
Confidence 567666 7999999999999999999999887532 7898 99999999999999999999999864
No 67
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=99.57 E-value=1.9e-14 Score=100.25 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=81.8
Q ss_pred CCCHHHHHHHHHHHHHhhhhcccchhhh-hc---cC-----------hHHHHHHHHHHHHHHHHHHcccCCCCcccCCCc
Q 027727 86 PYDPYQRAQARFWVDFIDKKMYDTSRKT-WA---TK-----------GEEQEAAKKEFIEVLKTLGGELGDKPFFGGDNF 150 (219)
Q Consensus 86 p~~~~~~a~~~~~~~~~~~~l~~~~~~~-~~---~~-----------~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~ 150 (219)
|.++.+++++++|+.+.++.+.+.+... +. .. ....+.....+.+.|+.||++|++++|++|+++
T Consensus 2 ~~~~~~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~ 81 (119)
T cd03189 2 PPDTAEYADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDRLAKKGYFVGDKL 81 (119)
T ss_pred CCCHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHccCCCCCCCCC
Confidence 4678899999999999998887765422 11 11 223445667899999999999998999999999
Q ss_pred chhhhhhhhhhhhhhhhhhhcCccccccCchHHHHHHHHhccc
Q 027727 151 GYVDLCLIPYYCWFYSYETFGKFSVEAECPKFIAWVTRCLQRE 193 (219)
Q Consensus 151 t~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~ 193 (219)
|+||+++++.+.++... +.. ...+|+|++|+++++++|
T Consensus 82 t~ADi~l~~~~~~~~~~----~~~-~~~~p~l~~w~~~~~~~p 119 (119)
T cd03189 82 TAADIMMSFPLEAALAR----GPL-LEKYPNIAAYLERIEARP 119 (119)
T ss_pred CHHHHHHHHHHHHHHHc----Ccc-cccCchHHHHHHHHhcCC
Confidence 99999999998886532 222 378999999999999986
No 68
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=99.57 E-value=1.5e-14 Score=101.78 Aligned_cols=106 Identities=17% Similarity=0.303 Sum_probs=83.4
Q ss_pred hhcccchhhhhccC-hHHHHHHHHHHHHHHHHHHcccCC----------------CCcccCCCcchhhhhhhhhhhhhhh
Q 027727 104 KKMYDTSRKTWATK-GEEQEAAKKEFIEVLKTLGGELGD----------------KPFFGGDNFGYVDLCLIPYYCWFYS 166 (219)
Q Consensus 104 ~~l~~~~~~~~~~~-~~~~~~~~~~l~~~l~~le~~L~~----------------~~~l~G~~~t~aD~~l~~~l~~~~~ 166 (219)
..+++.+..++.+. ++..+.....+...|+.||.+|.+ ++|++|+++|+|||++++.+.++..
T Consensus 9 ~~~f~~~~~~~~~~~~~~~e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~~~ 88 (134)
T cd03198 9 EDIFAKFSAYIKNSNPALNENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIVKV 88 (134)
T ss_pred HHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 34555555555543 556677778999999999999975 6799999999999999999988764
Q ss_pred hh-hhcCccccccCchHHHHHHHHhcccchhccCCChHHHHHHH
Q 027727 167 YE-TFGKFSVEAECPKFIAWVTRCLQRETVAKALPDEKKVFEFV 209 (219)
Q Consensus 167 ~~-~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (219)
+. ...++.+...+|+|.+|++++.+||+|+++....+.+...+
T Consensus 89 ~~~~~~g~~i~~~~P~L~aw~~ri~aRPsfk~t~~~~~~i~~~~ 132 (134)
T cd03198 89 VAKKYRNFEIPADLTGLWRYLKNAYQREEFTNTCPADQEIELAY 132 (134)
T ss_pred HHHhhcCCCccccCHHHHHHHHHHHCCHHHHHHcCCHHHHHHHh
Confidence 32 11345545789999999999999999999999887766544
No 69
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=99.57 E-value=2.7e-14 Score=99.10 Aligned_cols=104 Identities=22% Similarity=0.308 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHHHHhhhhcccchhhhhc-------------cChHHHHHHHHHHHHHHHHHHcccCCCCcccCCCcchhh
Q 027727 88 DPYQRAQARFWVDFIDKKMYDTSRKTWA-------------TKGEEQEAAKKEFIEVLKTLGGELGDKPFFGGDNFGYVD 154 (219)
Q Consensus 88 ~~~~~a~~~~~~~~~~~~l~~~~~~~~~-------------~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD 154 (219)
++.+++++++|+.+++..+.+.+...+. .+.+..+.....+.+.|+.||+.|++++|++|+++|+||
T Consensus 1 d~~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~gd~~t~aD 80 (117)
T cd03182 1 TPLERAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYLDTRLAGSPYVAGDRFTIAD 80 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHH
Confidence 4678999999999988887665443321 114456778889999999999999888999999999999
Q ss_pred hhhhhhhhhhhhhhhhcCccccccCchHHHHHHHHhcccch
Q 027727 155 LCLIPYYCWFYSYETFGKFSVEAECPKFIAWVTRCLQRETV 195 (219)
Q Consensus 155 ~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~ 195 (219)
+++++.+.++.. .+..+...+|+|.+|++++.++|++
T Consensus 81 i~l~~~~~~~~~----~~~~~~~~~p~l~~w~~~~~~~p~~ 117 (117)
T cd03182 81 ITAFVGLDFAKV----VKLRVPEELTHLRAWYDRMAARPSA 117 (117)
T ss_pred HHHHHHhHHHHh----cCCCCccccHHHHHHHHHHHhccCC
Confidence 999999988653 3344446899999999999999974
No 70
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=99.57 E-value=1.2e-14 Score=100.20 Aligned_cols=105 Identities=17% Similarity=0.270 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHhhhhcccchhhhh-----c--cChHHHHHHHHHHHHHHHHHHcccCCCCcccCCCcchhhhhhhhhhhh
Q 027727 91 QRAQARFWVDFIDKKMYDTSRKTW-----A--TKGEEQEAAKKEFIEVLKTLGGELGDKPFFGGDNFGYVDLCLIPYYCW 163 (219)
Q Consensus 91 ~~a~~~~~~~~~~~~l~~~~~~~~-----~--~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~ 163 (219)
+++++++|+.+.+..+.+.+...+ . .++...+.....+.+.++.+|+.|++++|++|+++|+|||++++.+.+
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~~~~ 80 (113)
T cd03178 1 ERYEVLQWLFFQMGGLGPMFGQAGHFSRYAPEKIPYAIERYTNEAKRLYGVLDKRLAGRDYLAGDEYSIADIAIFPWVRR 80 (113)
T ss_pred ChHHHHHHHHHHHccCCCcchHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHccCCcccCCCCCeeeeeHHHHHHH
Confidence 368899999999998887754321 1 124456677888999999999999989999999999999999999888
Q ss_pred hhhhhhhcCccccccCchHHHHHHHHhcccchhccC
Q 027727 164 FYSYETFGKFSVEAECPKFIAWVTRCLQRETVAKAL 199 (219)
Q Consensus 164 ~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~ 199 (219)
.... +......+|++.+|++++.++|++++++
T Consensus 81 ~~~~----~~~~~~~~p~l~~w~~~~~~~p~~~~~~ 112 (113)
T cd03178 81 LEWI----GIDDLDDFPNVKRWLDRIAARPAVQRGL 112 (113)
T ss_pred HHhc----cccchhhchHHHHHHHHHhhCHHHHHhc
Confidence 6532 2233478999999999999999999865
No 71
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=99.56 E-value=1.5e-14 Score=101.15 Aligned_cols=108 Identities=18% Similarity=0.163 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhhc-------cC--hHHHHHHHHHHHHHHHHHHcccC--CCCcccCCCcchhhhhhh
Q 027727 90 YQRAQARFWVDFIDKKMYDTSRKTWA-------TK--GEEQEAAKKEFIEVLKTLGGELG--DKPFFGGDNFGYVDLCLI 158 (219)
Q Consensus 90 ~~~a~~~~~~~~~~~~l~~~~~~~~~-------~~--~~~~~~~~~~l~~~l~~le~~L~--~~~~l~G~~~t~aD~~l~ 158 (219)
.+++++++|+.+.++.+.+.+...+. +. ....+...+.+.+.|..||++|+ +++|++|+++|+|||+++
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~~~ 81 (121)
T cd03191 2 KKRARVRALALIIACDIHPLNNLRVLKYLTEELGLDEEAKNAWYRHWIARGFAALEKLLAQTAGKFCFGDEPTLADICLV 81 (121)
T ss_pred hhHHHHHHHHHHHHccCCccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecCCcCCHHHHHHH
Confidence 46899999999999888765322111 11 12223445678999999999997 458999999999999999
Q ss_pred hhhhhhhhhhhhcCccccccCchHHHHHHHHhcccchhccCCCh
Q 027727 159 PYYCWFYSYETFGKFSVEAECPKFIAWVTRCLQRETVAKALPDE 202 (219)
Q Consensus 159 ~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~ 202 (219)
+.+.++.. .+..+ ..+|+|++|++++.++|+++++.+..
T Consensus 82 ~~~~~~~~----~~~~~-~~~p~l~~w~~~~~~~p~~~~~~~~~ 120 (121)
T cd03191 82 PQVYNARR----FGVDL-SPYPTIARINEACLELPAFQAAHPDN 120 (121)
T ss_pred HHHHHHHH----hCCCc-ccCcHHHHHHHHHHhChhHHHhCcCc
Confidence 99877553 23333 78999999999999999999987653
No 72
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=99.56 E-value=5.4e-14 Score=98.13 Aligned_cols=114 Identities=20% Similarity=0.387 Sum_probs=81.5
Q ss_pred CHHHHHHHHHHHHHhhhhcccch-hhhhccChHHHHHHHHHHHHHHHHHHcccC---CCCcccCCCcchhhhhhhhhhhh
Q 027727 88 DPYQRAQARFWVDFIDKKMYDTS-RKTWATKGEEQEAAKKEFIEVLKTLGGELG---DKPFFGGDNFGYVDLCLIPYYCW 163 (219)
Q Consensus 88 ~~~~~a~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~l~~le~~L~---~~~~l~G~~~t~aD~~l~~~l~~ 163 (219)
|+.+|+.+++|+.+... +...+ .+.+.+.. ...+.+.++.||+.|+ +++|++| ++|+||+++++.+.+
T Consensus 1 d~~~ra~~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~l~~Le~~L~~~~~~~fl~G-~~tlADi~l~~~~~~ 72 (120)
T cd03203 1 DPAKREFADELLAYTDA-FTKALYSSLIKGDP------SAEAAAALDYIENALSKFDDGPFFLG-QFSLVDIAYVPFIER 72 (120)
T ss_pred CHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCc------hHHHHHHHHHHHHHHHhcCCCCCcCC-CccHHHHHHHHHHHH
Confidence 46789999999988333 32222 23332221 2234566777777775 5899999 999999999999987
Q ss_pred hhh-hhhhcCccccccCchHHHHHHHHhcccchhccCCChHHHHHHH
Q 027727 164 FYS-YETFGKFSVEAECPKFIAWVTRCLQRETVAKALPDEKKVFEFV 209 (219)
Q Consensus 164 ~~~-~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (219)
+.. .....++++..++|+|.+|++++.++|+++++.+..+++.+.+
T Consensus 73 ~~~~~~~~~~~~~~~~~P~l~~W~~~~~~rp~~~~~~~~~~~~~~~~ 119 (120)
T cd03203 73 FQIFLSELFNYDITEGRPNLAAWIEEMNKIEAYTQTKQDPQELLDLA 119 (120)
T ss_pred HHHHHHHhcCccccccCcHHHHHHHHHhcchHHHhHcCCHHHHHhhh
Confidence 653 1123455554689999999999999999999999988776643
No 73
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=99.55 E-value=2.7e-14 Score=99.23 Aligned_cols=106 Identities=20% Similarity=0.354 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhhhhcccchhhh-----hc------cChHHHHHHHHHHHHHHHHHHcccCCCCcccCCCcchhhhhhhh
Q 027727 91 QRAQARFWVDFIDKKMYDTSRKT-----WA------TKGEEQEAAKKEFIEVLKTLGGELGDKPFFGGDNFGYVDLCLIP 159 (219)
Q Consensus 91 ~~a~~~~~~~~~~~~l~~~~~~~-----~~------~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~ 159 (219)
+++++.+|+.+....+.+.+... +. .+....+.....+.+.++.||++|++++|++|+++|+|||++++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~ 81 (118)
T cd03187 2 ERAIVEQWLEVESHQFDPPASALAFELVFKPMLGLPTDEAVVEENEEKLKKVLDVYEARLSKSKYLAGDSFTLADLSHLP 81 (118)
T ss_pred chHHHHHHHHHHHhhcchhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHcccCcccCCCCccHHHHHHHH
Confidence 47888899988887776654331 11 12344566778899999999999998999999999999999999
Q ss_pred hhhhhhhhhhhcCccccccCchHHHHHHHHhcccchhccC
Q 027727 160 YYCWFYSYETFGKFSVEAECPKFIAWVTRCLQRETVAKAL 199 (219)
Q Consensus 160 ~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~ 199 (219)
.+.++...+ .+ .....+|+|++|++++.++|++++++
T Consensus 82 ~~~~~~~~~--~~-~~~~~~p~l~~~~~~~~~~p~~~~~~ 118 (118)
T cd03187 82 YLQYLMATP--FA-KLFDSRPHVKAWWEDISARPAWKKVL 118 (118)
T ss_pred HHHHHHHcc--ch-hhhhcCchHHHHHHHHHhCHHHHhhC
Confidence 987765311 11 12368999999999999999998764
No 74
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=8.6e-14 Score=105.29 Aligned_cols=194 Identities=21% Similarity=0.212 Sum_probs=139.2
Q ss_pred CceEEecccCCchhHHHHHHHHHhCCC--ceeEEccC--CCCChhh------------------------------HhhC
Q 027727 3 DEVILLDFWASMFGIRVRIALAEKGVK--YEYKEQDL--FNKSPLL------------------------------LRMN 48 (219)
Q Consensus 3 ~~~~L~~~~~s~~~~~v~~~l~~~gi~--~~~~~v~~--~~~~~~~------------------------------~~~~ 48 (219)
+++-||..-.|||++|+.+..+++|++ .-...+.. .++...| ...+
T Consensus 36 gryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~ 115 (319)
T KOG2903|consen 36 GRYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIAS 115 (319)
T ss_pred ceEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcC
Confidence 467899999999999999999999996 11111111 1111111 1112
Q ss_pred C----CCCeecEEEe---CCeeeehhHHHHHHHHhhcC---C-----CCCCCCCCHHHHHHHHHHHHHhhhhcccchh-h
Q 027727 49 P----VHKKIPVLIH---NGKSVCESSIIVQYIDEVWK---D-----KAPLLPYDPYQRAQARFWVDFIDKKMYDTSR-K 112 (219)
Q Consensus 49 p----~~~~vP~l~~---~g~~l~es~~I~~yL~~~~~---~-----~~~l~p~~~~~~a~~~~~~~~~~~~l~~~~~-~ 112 (219)
| . .+||||=| ...+-.||..|++.+...+. . .-.|+|. ..+++++.|..|+-..+-.-+. -
T Consensus 116 p~Y~gr-fTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~--~L~~~Ide~N~wvy~~INNGVYk~ 192 (319)
T KOG2903|consen 116 PNYTGR-FTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPS--SLRAQIDETNSWVYDKINNGVYKC 192 (319)
T ss_pred CCCCce-EEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCH--HHHHHHhhhhceecccccCceeee
Confidence 2 2 26999986 34567899999999983332 1 2346764 4688898888888776643322 2
Q ss_pred hhccChHHHHHHHHHHHHHHHHHHcccCCCC--cccCCCcchhhhhhhhhhhhhhhhhhhcCcc-----ccccCchHHHH
Q 027727 113 TWATKGEEQEAAKKEFIEVLKTLGGELGDKP--FFGGDNFGYVDLCLIPYYCWFYSYETFGKFS-----VEAECPKFIAW 185 (219)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~--~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~-----~~~~~p~l~~~ 185 (219)
.+..+.+.-+....++-..|+.+|..|+.+. |++|+++|-||+.+++.+.++..+- ...++ +..+||+|-.|
T Consensus 193 GFA~~~e~Ye~~V~~lfe~LDr~E~vL~~~~~~f~~G~~LTeaDirLy~TiIRFD~VY-~~hFKCn~~~ir~~Yp~l~~~ 271 (319)
T KOG2903|consen 193 GFAEKQEAYEEEVNQLFEALDRCEDVLGKNRKYFLCGDTLTEADIRLYTTIIRFDEVY-VQHFKCNKKTIRDEYPNLHNW 271 (319)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHhcccceEeeccccchhheeeeeeEEeehhhh-heeeecchhhhhccCcHHHHH
Confidence 3555677888888899999999999998877 9999999999999999998887532 11122 24799999999
Q ss_pred HHHHhc-ccchhccCC
Q 027727 186 VTRCLQ-RETVAKALP 200 (219)
Q Consensus 186 ~~~~~~-~~~~~~~~~ 200 (219)
.+++.+ .|.++.+..
T Consensus 272 lk~iY~~~~~~~~Ttd 287 (319)
T KOG2903|consen 272 LKNIYWNIPGFSSTTD 287 (319)
T ss_pred HHHHHhhccchhhccc
Confidence 999998 888887653
No 75
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=99.53 E-value=7.9e-14 Score=97.30 Aligned_cols=102 Identities=19% Similarity=0.350 Sum_probs=76.0
Q ss_pred cccchhhhhccChHHHHHHHHHHHHHHHHHHcccCC-CCcccCCCcchhhhhhhhhhhhhhhh-hhhcCccccccCchHH
Q 027727 106 MYDTSRKTWATKGEEQEAAKKEFIEVLKTLGGELGD-KPFFGGDNFGYVDLCLIPYYCWFYSY-ETFGKFSVEAECPKFI 183 (219)
Q Consensus 106 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~-~~~l~G~~~t~aD~~l~~~l~~~~~~-~~~~~~~~~~~~p~l~ 183 (219)
+.+.+..++.+.++. ++..+.+.+.|..||..|++ ++|++|+++|+||+++++.+.++... +...+......+|+|.
T Consensus 14 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~Le~~L~~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~P~l~ 92 (121)
T cd03201 14 IFSTFVGFLKSKDSN-DGTEQALLDELEALEDHLKENGPFINGEKISAVDLSLAPKLYHLEIALGHYKNWSVPESLTSVK 92 (121)
T ss_pred HHHHHHHHHHCCcHH-HHHHHHHHHHHHHHHHHHhcCCCccCCCCCCHHhHHHHHHHHHHHHHHHHhcCCCCcccchHHH
Confidence 333333444333322 55667799999999999974 79999999999999999988776642 2222333347999999
Q ss_pred HHHHHHhcccchhccCCChHHHHHH
Q 027727 184 AWVTRCLQRETVAKALPDEKKVFEF 208 (219)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (219)
+|++++.+||+++++.+..+.....
T Consensus 93 ~w~~rl~~rps~~~t~~~~~~~~~~ 117 (121)
T cd03201 93 SYMKALFSRESFVKTKAEKEDVIAG 117 (121)
T ss_pred HHHHHHHCCchhhhcCCCHHHHHHH
Confidence 9999999999999999987765443
No 76
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=99.50 E-value=5.8e-14 Score=97.71 Aligned_cols=105 Identities=20% Similarity=0.274 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHhhhhcccchhhhhc----cChHHHHHHHHHHHHHHHHHHcccCCCCcccCCCcchhhhhhhhhhhhhhh
Q 027727 91 QRAQARFWVDFIDKKMYDTSRKTWA----TKGEEQEAAKKEFIEVLKTLGGELGDKPFFGGDNFGYVDLCLIPYYCWFYS 166 (219)
Q Consensus 91 ~~a~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~ 166 (219)
+++++.+|+.+..+.+.+.+...+. .++...+.....+.+.++.||+.|++++|++|+++|+||+++++.+.++..
T Consensus 2 ~~a~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~aDi~l~~~~~~~~~ 81 (118)
T cd03177 2 KRAIVNQRLHFDSGTLYQRLRDYYYPILFGGAEPPEEKLDKLEEALDFLETFLEGSDYVAGDQLTIADLSLVATVSTLEA 81 (118)
T ss_pred hHHHHHHHHHhhhchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHccCCeeCCCCcCHHHHHHHHHHHHHHH
Confidence 4788899998887777655433322 223455677788999999999999888999999999999999999988763
Q ss_pred hhhhcCccccccCchHHHHHHHHhcccchhccC
Q 027727 167 YETFGKFSVEAECPKFIAWVTRCLQRETVAKAL 199 (219)
Q Consensus 167 ~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~ 199 (219)
..+... ..+|+|++|++++.++|++++..
T Consensus 82 ---~~~~~~-~~~p~l~~w~~~~~~~p~~~~~~ 110 (118)
T cd03177 82 ---LLPLDL-SKYPNVRAWLERLKALPPYEEAN 110 (118)
T ss_pred ---hcCCCh-hhCchHHHHHHHHHcccchHHHH
Confidence 123333 67999999999999999999854
No 77
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.49 E-value=2e-13 Score=93.55 Aligned_cols=100 Identities=20% Similarity=0.391 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhhhhcccchhhhhc----c-----ChHHHHHHHHHHHHHHHHHHcccCCCCcccCCCcchhhhhhhhhh
Q 027727 91 QRAQARFWVDFIDKKMYDTSRKTWA----T-----KGEEQEAAKKEFIEVLKTLGGELGDKPFFGGDNFGYVDLCLIPYY 161 (219)
Q Consensus 91 ~~a~~~~~~~~~~~~l~~~~~~~~~----~-----~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l 161 (219)
+++++++|+.+..+.+.+.+...+. . .....+.....+.+.|+.||++|++++|++|+++|+||+++++.+
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~l~g~~~t~aDi~~~~~~ 81 (110)
T cd03180 2 ARARADRWMDWQTSTLNPAFRYAFWGLVRTPPEQRDPAAIAASLAAWAKLMAILDAQLAGRPYLAGDRFTLADIPLGCSA 81 (110)
T ss_pred chhHHHHHHHHHHhhcChHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHHH
Confidence 4788999999998888877654321 1 133456678899999999999999889999999999999999987
Q ss_pred hhhhhhhhhcCccccccCchHHHHHHHHhcccch
Q 027727 162 CWFYSYETFGKFSVEAECPKFIAWVTRCLQRETV 195 (219)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~ 195 (219)
..... . +.. ...+|+|++|++++.++|++
T Consensus 82 ~~~~~---~-~~~-~~~~p~l~~~~~~~~~~p~~ 110 (110)
T cd03180 82 YRWFE---L-PIE-RPPLPHLERWYARLRARPAF 110 (110)
T ss_pred HHHHH---c-ccc-cccCchHHHHHHHHHhCCCC
Confidence 54322 1 222 37899999999999999975
No 78
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=99.49 E-value=1.6e-13 Score=95.98 Aligned_cols=108 Identities=16% Similarity=0.225 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhhhhcccchhhhhc-cC-hHHHHHHHHHHHHHHHHHHcccCCCCcccCCCcchhhhhhhhhhhhhhhhh
Q 027727 91 QRAQARFWVDFIDKKMYDTSRKTWA-TK-GEEQEAAKKEFIEVLKTLGGELGDKPFFGGDNFGYVDLCLIPYYCWFYSYE 168 (219)
Q Consensus 91 ~~a~~~~~~~~~~~~l~~~~~~~~~-~~-~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~ 168 (219)
++++++..++.+.+.... +...+. .+ ....+.....+.+.+..||.+|++++|++|+++|+||+++++.+.++....
T Consensus 2 e~~~id~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T~aDi~l~~~~~~~~~~~ 80 (121)
T cd03209 2 ERIRVDMLEQQAMDLRMG-LARICYSPDFEKLKPDYLAKLPDKLKLFSDFLGDRPWFAGDKITYVDFLLYEALDQHRIFE 80 (121)
T ss_pred chHHHHHHHHHHHHHHHH-HHHhhcCcchHHHHHHHHHHHHHHHHHHHHHhCCCCCcCCCCccHHHHHHHHHHHHHHHhC
Confidence 456677776666553322 222222 12 344556777889999999999988899999999999999999998876421
Q ss_pred hhcCccccccCchHHHHHHHHhcccchhccCCChH
Q 027727 169 TFGKFSVEAECPKFIAWVTRCLQRETVAKALPDEK 203 (219)
Q Consensus 169 ~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~ 203 (219)
......+|+|.+|++++.++|++++++++..
T Consensus 81 ----~~~~~~~P~l~~~~~rv~~~p~vk~~~~~~~ 111 (121)
T cd03209 81 ----PDCLDAFPNLKDFLERFEALPKISAYMKSDR 111 (121)
T ss_pred ----ccccccChHHHHHHHHHHHCHHHHHHHhccc
Confidence 1223789999999999999999999987654
No 79
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=99.49 E-value=9.6e-14 Score=97.20 Aligned_cols=109 Identities=17% Similarity=0.275 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhhhhcccchhhhhc-------cChHHHHHHHHHHHHHHHHHHcccCCCCcccCCCcchhhhhhhhhhhhh
Q 027727 92 RAQARFWVDFIDKKMYDTSRKTWA-------TKGEEQEAAKKEFIEVLKTLGGELGDKPFFGGDNFGYVDLCLIPYYCWF 164 (219)
Q Consensus 92 ~a~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~ 164 (219)
+++++.|+.+++..+.+.+...+. .+....+.....+.+.|+.||+.|++++|++|+++|+||+++++.+.++
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~siaDi~l~~~~~~~ 81 (123)
T cd03181 2 EAQVLQWVSFANTELLPAVAAWFLPLLGIAPYNKKSVEAALEELDRVLGVLEERLLKRTYLVGERLTLADIFVAGALLLG 81 (123)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHccCceeccCCccHHHHHHHHHHHHH
Confidence 678999999999888876554332 1234567788889999999999999889999999999999999999886
Q ss_pred hhhhhhcCccccccCchHHHHHHHHhcccchhccCCCh
Q 027727 165 YSYETFGKFSVEAECPKFIAWVTRCLQRETVAKALPDE 202 (219)
Q Consensus 165 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~ 202 (219)
.... .+......+|++.+|++++.++|++++++++.
T Consensus 82 ~~~~--~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 117 (123)
T cd03181 82 FTYV--FDKEWRAKYPNVTRWFNTVVNQPIFKAVFGEV 117 (123)
T ss_pred HHHH--cCHHHHHhChHHHHHHHHHHcCHHHHHHcCCC
Confidence 4311 11122367999999999999999999988664
No 80
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.47 E-value=6.8e-14 Score=94.92 Aligned_cols=98 Identities=19% Similarity=0.285 Sum_probs=73.7
Q ss_pred HHHHhhhhcccchhhhhcc-ChHHHHHHHHHHHHHHHHHHcccCCCCcccCCCcchhhhhhhhhhhhhhhhhhhcCcccc
Q 027727 98 WVDFIDKKMYDTSRKTWAT-KGEEQEAAKKEFIEVLKTLGGELGDKPFFGGDNFGYVDLCLIPYYCWFYSYETFGKFSVE 176 (219)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~ 176 (219)
|+.+.++.+.+.+...+.. .++..+.....+.+.++.||++|++++|++|+++|+||+++++.+.+.... + ..
T Consensus 4 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~g~~~t~aDi~~~~~~~~~~~~----~--~~ 77 (103)
T cd03207 4 WLFFYAGVVEPALIAKAMGIEEPARMAGFGSYDDVLAALEQALAKGPYLLGERFTAADVLVGSPLGWGLQF----G--LL 77 (103)
T ss_pred eeeeccccccHHHHHHHcCCCcchhhhhhhhHHHHHHHHHHHHccCCcccCCccCHHHHHHHHHHHHHHHc----C--CC
Confidence 3444444444433322222 133456677889999999999999899999999999999999999886631 2 23
Q ss_pred ccCchHHHHHHHHhcccchhccCCC
Q 027727 177 AECPKFIAWVTRCLQRETVAKALPD 201 (219)
Q Consensus 177 ~~~p~l~~~~~~~~~~~~~~~~~~~ 201 (219)
..+|+|++|+++++++|+++++.+.
T Consensus 78 ~~~p~l~~w~~~~~~~p~~~~~~~~ 102 (103)
T cd03207 78 PERPAFDAYIARITDRPAFQRAAAI 102 (103)
T ss_pred CCChHHHHHHHHHHcCHHHHHHhcc
Confidence 6899999999999999999987653
No 81
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=99.46 E-value=4.2e-13 Score=95.76 Aligned_cols=123 Identities=17% Similarity=0.169 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhhhhcccchhhhhccChH---H-HHHHHHHHHHHHHHHHcccC--CCCcccCCCcchhhhhhhhhhhhh
Q 027727 91 QRAQARFWVDFIDKKMYDTSRKTWATKGE---E-QEAAKKEFIEVLKTLGGELG--DKPFFGGDNFGYVDLCLIPYYCWF 164 (219)
Q Consensus 91 ~~a~~~~~~~~~~~~l~~~~~~~~~~~~~---~-~~~~~~~l~~~l~~le~~L~--~~~~l~G~~~t~aD~~l~~~l~~~ 164 (219)
+.+.++..++.+.+.+...+...+..+.+ . .......+.+.|..||+.|. +++|++|+++|+||+++++.+.++
T Consensus 3 e~a~iD~i~~~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~~~l~G~~~T~ADi~l~~~l~~~ 82 (137)
T cd03208 3 ERALIDMYVEGTADLMEMILMLPFLPPEEKEAKLALIKEKAKNRYFPVFEKVLKSHGQDFLVGNKLSRADIHLLEAILMV 82 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCCCCHHHHHHHHHHHHH
Confidence 56777777777766554433222222211 1 12223456899999999997 678999999999999999999887
Q ss_pred hhhhhhcCccccccCchHHHHHHHHhcccchhccCCChHH-----HHHHHHHHHHHHh
Q 027727 165 YSYETFGKFSVEAECPKFIAWVTRCLQRETVAKALPDEKK-----VFEFVSVLREKIR 217 (219)
Q Consensus 165 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 217 (219)
.... ......+|+|++|++++.++|+++++++.... .....+..||-|+
T Consensus 83 ~~~~----~~~l~~~P~l~~~~~rv~~~P~vk~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (137)
T cd03208 83 EELD----PSLLSDFPLLQAFKTRISNLPTIKKFLQPGSPRKPPPDEKYVETVRKVFK 136 (137)
T ss_pred HHhc----hhhhccChHHHHHHHHHHcCHHHHHHHhcCCCCCCCccHHHHHHHHHHhc
Confidence 6421 12237899999999999999999998865432 2344445666553
No 82
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=99.46 E-value=2e-13 Score=96.05 Aligned_cols=104 Identities=22% Similarity=0.290 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhhhhcccchhh---------hhcc---ChHHHHHHHHHHHHHHHHHHccc-CCCCcccCCCcchhhhhhh
Q 027727 92 RAQARFWVDFIDKKMYDTSRK---------TWAT---KGEEQEAAKKEFIEVLKTLGGEL-GDKPFFGGDNFGYVDLCLI 158 (219)
Q Consensus 92 ~a~~~~~~~~~~~~l~~~~~~---------~~~~---~~~~~~~~~~~l~~~l~~le~~L-~~~~~l~G~~~t~aD~~l~ 158 (219)
++++++|+.+....+.+.+.. .+.+ .++..+...+.+.+.++.+|++| ++++|++|+++|+||++++
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~l~Gd~~t~ADi~l~ 81 (126)
T cd03183 2 RARVDEYLAWQHTNLRLGCAKYFWQKVLLPLLGGKPVSPEKVKKAEENLEESLDLLENYFLKDKPFLAGDEISIADLSAV 81 (126)
T ss_pred cccHHHHHHHHHhhhHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHH
Confidence 466788888887766544322 1111 24556677788999999999984 6578999999999999999
Q ss_pred hhhhhhhhhhhhcCccccccCchHHHHHHHHhc--ccchhccC
Q 027727 159 PYYCWFYSYETFGKFSVEAECPKFIAWVTRCLQ--RETVAKAL 199 (219)
Q Consensus 159 ~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~--~~~~~~~~ 199 (219)
+.+.+... .+.+....+|+|.+|++++.+ +|++++..
T Consensus 82 ~~~~~~~~----~~~~~~~~~p~l~~w~~~~~~~~~p~~~~~~ 120 (126)
T cd03183 82 CEIMQPEA----AGYDVFEGRPKLAAWRKRVKEAGNPLFDEAH 120 (126)
T ss_pred HHHHHHHh----cCCcccccCchHHHHHHHHHHhcchhHHHHH
Confidence 98877653 233334789999999999999 99998854
No 83
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=99.46 E-value=3.5e-13 Score=90.15 Aligned_cols=95 Identities=20% Similarity=0.347 Sum_probs=76.3
Q ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhhhcccchhhhhccChHHHHHHHHHHHHHHHHHHcccCCCCcccCCCc
Q 027727 71 VQYIDEVWKDKAPLLPYDPYQRAQARFWVDFIDKKMYDTSRKTWATKGEEQEAAKKEFIEVLKTLGGELGDKPFFGGDNF 150 (219)
Q Consensus 71 ~~yL~~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~ 150 (219)
++||++..+ ++|+++.++++++.|++.....+.. .....+.+.++.+|++|++++|++|+++
T Consensus 1 ~r~~~~~~~----~~~~~~~~~~~vd~~~d~~~~~l~~--------------~~~~~~~~~l~~le~~L~~~~fl~Gd~~ 62 (96)
T cd03200 1 ARFLYRLLG----PAPNAPNAATNIDSWVDTAIFQLAE--------------GSSKEKAAVLRALNSALGRSPWLVGSEF 62 (96)
T ss_pred CchHHHHhc----ccCCCchHHHHHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHHHcCCCccCCCCC
Confidence 478888844 8999999999999999977644431 1345666788899999999999999999
Q ss_pred chhhhhhhhhhhhhhhhhhhcCccccccCchHHHHHHHHhc
Q 027727 151 GYVDLCLIPYYCWFYSYETFGKFSVEAECPKFIAWVTRCLQ 191 (219)
Q Consensus 151 t~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 191 (219)
|+|||++++.+.+. +... ..+|+|.+|++++.+
T Consensus 63 tiADi~l~~~l~~~-------~~~~-~~~p~l~~w~~r~~~ 95 (96)
T cd03200 63 TVADIVSWCALLQT-------GLAS-AAPANVQRWLKSCEN 95 (96)
T ss_pred CHHHHHHHHHHHHc-------cccc-ccChHHHHHHHHHHh
Confidence 99999999987652 1222 689999999999975
No 84
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=99.45 E-value=2.9e-13 Score=95.25 Aligned_cols=108 Identities=18% Similarity=0.164 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhhhhcccchhhhhccC-hHHHHHHHHHHHHHHHHHHcccC---CCCcccCCCcchhhhhhhhhhhhhhh
Q 027727 91 QRAQARFWVDFIDKKMYDTSRKTWATK-GEEQEAAKKEFIEVLKTLGGELG---DKPFFGGDNFGYVDLCLIPYYCWFYS 166 (219)
Q Consensus 91 ~~a~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~l~~le~~L~---~~~~l~G~~~t~aD~~l~~~l~~~~~ 166 (219)
+++.++..+..+.+. ...+...+... ....+.....+.+.+..||+.|+ +++|++|+++|+||+++++.+.++..
T Consensus 3 e~~~vd~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~l~~~~~~~~~ 81 (126)
T cd03210 3 EAALIDMVNDGVEDL-RLKYVRMIYQNYEAGKDDYIKDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYNLFDLLDIHLV 81 (126)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHHHHHHHHHHHH
Confidence 456666666655443 23333333322 33455666778999999999996 35899999999999999999988764
Q ss_pred hhhhcCccccccCchHHHHHHHHhcccchhccCCChH
Q 027727 167 YETFGKFSVEAECPKFIAWVTRCLQRETVAKALPDEK 203 (219)
Q Consensus 167 ~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~ 203 (219)
. .+ .....+|+|.+|++++.++|+++++++...
T Consensus 82 ~---~~-~~~~~~P~l~~~~~rv~~~p~v~~~~~~~~ 114 (126)
T cd03210 82 L---AP-GCLDAFPLLKAFVERLSARPKLKAYLESDA 114 (126)
T ss_pred h---Ch-HhhhcChHHHHHHHHHHhCcHHHHHHhCcC
Confidence 2 11 123789999999999999999999886543
No 85
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.43 E-value=5e-13 Score=92.40 Aligned_cols=103 Identities=18% Similarity=0.137 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHhhhhcccchhhh-----hccC--hHHHHHHHHHHHHHHHHHHcccC-CCCcccCCCcchhhhhhhhhh
Q 027727 90 YQRAQARFWVDFIDKKMYDTSRKT-----WATK--GEEQEAAKKEFIEVLKTLGGELG-DKPFFGGDNFGYVDLCLIPYY 161 (219)
Q Consensus 90 ~~~a~~~~~~~~~~~~l~~~~~~~-----~~~~--~~~~~~~~~~l~~~l~~le~~L~-~~~~l~G~~~t~aD~~l~~~l 161 (219)
.+++++++|+.++++.+.+..... +.+. ....+.....+.+.++.+|..|+ +++||+| .+|+||+++++.+
T Consensus 2 ~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~l~G-~fSiAD~~l~~~~ 80 (114)
T cd03195 2 RQRARARQVQAWLRSDLLPIRVERSTEVVFAGAKAEPLSEAAQAAAEKLIAVAEALLPPGAANLFG-EWCIADTDLALML 80 (114)
T ss_pred HhhHHHHHHHHHHHhhHHHHHHhCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcccC-CccHHHHHHHHHH
Confidence 478999999999999998642111 1111 22456677888999999999994 5589999 5999999999999
Q ss_pred hhhhhhhhhcCccccccCchHHHHHHHHhcccchhccCC
Q 027727 162 CWFYSYETFGKFSVEAECPKFIAWVTRCLQRETVAKALP 200 (219)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~ 200 (219)
.|+.. .|+++ . |++.+|++++.+||++++.++
T Consensus 81 ~~~~~----~g~~l-~--p~l~ay~~r~~~rPa~~~~~~ 112 (114)
T cd03195 81 NRLVL----NGDPV-P--ERLRDYARRQWQRPSVQAWLA 112 (114)
T ss_pred HHHHH----cCCCC-C--HHHHHHHHHHHCCHHHHHHHh
Confidence 99774 34554 2 999999999999999998764
No 86
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.40 E-value=5.2e-13 Score=90.10 Aligned_cols=95 Identities=16% Similarity=0.299 Sum_probs=70.1
Q ss_pred HHHHHHhhhhcccchhhhh----ccChHHHHHHHHHHHHHHHHHHcccCCCCcccCCCcchhhhhhhhhhhhhhhhhhhc
Q 027727 96 RFWVDFIDKKMYDTSRKTW----ATKGEEQEAAKKEFIEVLKTLGGELGDKPFFGGDNFGYVDLCLIPYYCWFYSYETFG 171 (219)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~ 171 (219)
.+|+.+..+.+.+...... ...+...+....++.+.++.+|++|++++|++|+++|+||+++++.+.+... .
T Consensus 2 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~~~----~ 77 (100)
T cd03206 2 QRWLSVAAGEIANGPAAARLITLFGAPLDKETAIARAHRLLRLLEEHLAGRDWLAGDRPTIADVAVYPYVALAPE----G 77 (100)
T ss_pred ceehhhhhhhcccchhHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHccCCccCCCCCCHHHHHHHHHHHHHhc----c
Confidence 3566666666643322211 1123345677889999999999999989999999999999999998866432 2
Q ss_pred CccccccCchHHHHHHHHhcccch
Q 027727 172 KFSVEAECPKFIAWVTRCLQRETV 195 (219)
Q Consensus 172 ~~~~~~~~p~l~~~~~~~~~~~~~ 195 (219)
+..+ .++|+|++|++++.++|++
T Consensus 78 ~~~~-~~~p~l~~~~~~~~~~p~~ 100 (100)
T cd03206 78 GVDL-EDYPAIRRWLARIEALPGF 100 (100)
T ss_pred CCCh-hhCcHHHHHHHHHHhCcCC
Confidence 2222 7899999999999999975
No 87
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=99.40 E-value=8.2e-13 Score=88.16 Aligned_cols=72 Identities=25% Similarity=0.446 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHHHHHHHcccCCCCcccCCCcchhhhhhhhhhhhhhhhhhhcCcccc-ccCchHHHHHHHHhccc
Q 027727 118 GEEQEAAKKEFIEVLKTLGGELGDKPFFGGDNFGYVDLCLIPYYCWFYSYETFGKFSVE-AECPKFIAWVTRCLQRE 193 (219)
Q Consensus 118 ~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~-~~~p~l~~~~~~~~~~~ 193 (219)
.+..+.....+.+.|+.+|..|++++|++|+++|+||+++++.+.++...+ .... .++|+|.+|++++.++|
T Consensus 23 ~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~~----~~~~~~~~P~l~~w~~~~~~~P 95 (95)
T PF00043_consen 23 EEMVEEARAKVPRYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDWLERLG----PDFLFEKFPKLKKWYERMFARP 95 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHHT----TTTTHTTSHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHHHHHhC----CCcccccCHHHHHHHHHHHcCC
Confidence 346778889999999999999999999999999999999999999987543 2333 79999999999999997
No 88
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.36 E-value=3.2e-12 Score=86.84 Aligned_cols=95 Identities=23% Similarity=0.290 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHhhhhcccchhhhhc---------cChHHHHHHHHHHHHHHHHHHcccCCCCcccCCCcchhhhhhhhhh
Q 027727 91 QRAQARFWVDFIDKKMYDTSRKTWA---------TKGEEQEAAKKEFIEVLKTLGGELGDKPFFGGDNFGYVDLCLIPYY 161 (219)
Q Consensus 91 ~~a~~~~~~~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l 161 (219)
+++++++|+.+.++.+.+.+..... ..++..+.....+.+.++.||..|++++|++|+++|+||+++++.+
T Consensus 2 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~g~~~slaDi~~~~~~ 81 (105)
T cd03179 2 ERAQVLRWLFFEQYSHEPYIATLRFLRVYLGLGEADAEVLAFLRERGHAALAVLEAHLAGRDFLVGDALTIADIALAAYT 81 (105)
T ss_pred cHHHHHHHHHHhhcccCccceeeeeeEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHccCccccCCCCCHHHHHHHHHH
Confidence 5789999999988888766543211 1245667888999999999999998889999999999999999999
Q ss_pred hhhhhhhhhcCccccccCchHHHHHHHHh
Q 027727 162 CWFYSYETFGKFSVEAECPKFIAWVTRCL 190 (219)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~~ 190 (219)
.++.. .+.. ...+|+|.+|+++++
T Consensus 82 ~~~~~----~~~~-~~~~p~l~~~~~~~~ 105 (105)
T cd03179 82 HVADE----GGFD-LADYPAIRAWLARIE 105 (105)
T ss_pred Hhccc----cCCC-hHhCccHHHHHHhhC
Confidence 88653 2333 367999999999874
No 89
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.34 E-value=4.8e-12 Score=79.64 Aligned_cols=59 Identities=19% Similarity=0.238 Sum_probs=49.5
Q ss_pred CCchhHHHHHHHHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHHhh
Q 027727 12 ASMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDEV 77 (219)
Q Consensus 12 ~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~~~ 77 (219)
.+++|.+++++|++.|+||+.+.... .. ..+|. |+||+|++||.+|+||.+|+.||+++
T Consensus 16 ~~~~~~kv~~~L~elglpye~~~~~~----~~--~~~P~-GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 16 DNASCLAVQTFLKMCNLPFNVRCRAN----AE--FMSPS-GKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCHHHHHHHHHHcCCCcEEEecCC----cc--ccCCC-CcccEEEECCEEEeCHHHHHHHHhcC
Confidence 47789999999999999999884311 11 36787 99999999999999999999999763
No 90
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.34 E-value=3.6e-12 Score=86.97 Aligned_cols=74 Identities=26% Similarity=0.298 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHHHHHHHHcccCCC----------CcccCCCcchhhhhhhhhhhhhhhhhhhcCccc----cccCchHH
Q 027727 118 GEEQEAAKKEFIEVLKTLGGELGDK----------PFFGGDNFGYVDLCLIPYYCWFYSYETFGKFSV----EAECPKFI 183 (219)
Q Consensus 118 ~~~~~~~~~~l~~~l~~le~~L~~~----------~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~----~~~~p~l~ 183 (219)
.+..+.....+.+.++.||.+|.++ +|++|+++|+|||++++.+.++..+ ++.. ...+|+|.
T Consensus 24 ~~~i~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~~~----~~~~~~~~~~~~P~l~ 99 (111)
T cd03204 24 VEYLKKILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLKFL----GLSRRYWGNGKRPNLE 99 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHHHc----CccccccccccChHHH
Confidence 4556788899999999999999654 4999999999999999999987642 2222 26899999
Q ss_pred HHHHHHhcccch
Q 027727 184 AWVTRCLQRETV 195 (219)
Q Consensus 184 ~~~~~~~~~~~~ 195 (219)
+|++++.+||+|
T Consensus 100 ~w~~rv~aRpsf 111 (111)
T cd03204 100 AYFERVLQRESF 111 (111)
T ss_pred HHHHHHHcCCCC
Confidence 999999999985
No 91
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=99.33 E-value=3.7e-12 Score=79.91 Aligned_cols=68 Identities=26% Similarity=0.469 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHcccCCCCcccCCCcchhhhhhhhhhhhhhhhhhhcCccccccCchHHHHHHH
Q 027727 119 EEQEAAKKEFIEVLKTLGGELGDKPFFGGDNFGYVDLCLIPYYCWFYSYETFGKFSVEAECPKFIAWVTR 188 (219)
Q Consensus 119 ~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~ 188 (219)
...++..+++.+.++.||.+|++++|++|++||+||+++++.+.++..+.. +..+...+|+|.+|++|
T Consensus 2 ~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~--~~~~~~~~p~l~~w~~r 69 (69)
T PF13410_consen 2 AAVERARAQLEAALDALEDHLADGPFLFGDRPSLADIALAPFLWRLRFVGP--DFDLLEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSBTTBSS--HHHHHHHHHHHHHHHCTH--TCCHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhCc--CcCccccCHHHHHHHhC
Confidence 456788899999999999999999999999999999999999999886532 22344899999999986
No 92
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=1.1e-10 Score=85.76 Aligned_cols=170 Identities=15% Similarity=0.224 Sum_probs=128.9
Q ss_pred CchhHHHHHHHHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHHhhcCCCCCCCCCCHHHH
Q 027727 13 SMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDEVWKDKAPLLPYDPYQR 92 (219)
Q Consensus 13 s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~~~~~~~~~l~p~~~~~~ 92 (219)
...|..|..+|+..++||..+..+. .+ -.+|- |+||.|..|.++++|-.+|..+...+-..-.++. +..++
T Consensus 34 ~ascLAVqtfLrMcnLPf~v~~~~N----ae--fmSP~-G~vPllr~g~~~~aef~pIV~fVeak~~~l~s~l--sE~qk 104 (257)
T KOG3027|consen 34 NASCLAVQTFLRMCNLPFNVRQRAN----AE--FMSPG-GKVPLLRIGKTLFAEFEPIVDFVEAKGVTLTSWL--SEDQK 104 (257)
T ss_pred chhHHHHHHHHHHcCCCceeeecCC----cc--ccCCC-CCCceeeecchhhhhhhHHHHHHHHhccchhhhh--hhHHH
Confidence 4468999999999999999886542 23 46886 9999999999999999999999988754111222 55689
Q ss_pred HHHHHHHHHhhhhcccchh------------------------------hhhcc------------ChHHHHHHHHHHHH
Q 027727 93 AQARFWVDFIDKKMYDTSR------------------------------KTWAT------------KGEEQEAAKKEFIE 130 (219)
Q Consensus 93 a~~~~~~~~~~~~l~~~~~------------------------------~~~~~------------~~~~~~~~~~~l~~ 130 (219)
+.++..++.++..+..+=. ++..+ ++...+...+++.+
T Consensus 105 admra~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqVie~vdk 184 (257)
T KOG3027|consen 105 ADMRAYVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQVIEQVDK 184 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHH
Confidence 9999999888876543200 00000 12335778889999
Q ss_pred HHHHHHcccCCCCcccCCCcchhhhhhhhhhhhhhhhhhhcCccc---cccCchHHHHHHHHhcc
Q 027727 131 VLKTLGGELGDKPFFGGDNFGYVDLCLIPYYCWFYSYETFGKFSV---EAECPKFIAWVTRCLQR 192 (219)
Q Consensus 131 ~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~---~~~~p~l~~~~~~~~~~ 192 (219)
+++.|+.+|+..+|+.|+.||=+|..+|..+..+.... ....++ .+.|++|-++.+|+++.
T Consensus 185 c~~aLsa~L~~q~yf~g~~P~elDAlvFGHlytilTt~-Lpn~ela~~lkkys~LlefcrrIeq~ 248 (257)
T KOG3027|consen 185 CCRALSAQLGSQPYFTGDQPTELDALVFGHLYTILTTR-LPNMELANILKKYSNLLEFCRRIEQQ 248 (257)
T ss_pred HHHHHHHHhcCCCccCCCCccHHHHHHHhhhHHhhhhc-CCcHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987765432 333332 38999999999999863
No 93
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=99.24 E-value=1.1e-11 Score=83.49 Aligned_cols=95 Identities=20% Similarity=0.420 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHhhhhcccchhhhhccChHHHHHHHHHHHHHHHHHHcccCCCC--cccCCCcchhhhhhhhhhhhhhh
Q 027727 89 PYQRAQARFWVDFIDKKMYDTSRKTWATKGEEQEAAKKEFIEVLKTLGGELGDKP--FFGGDNFGYVDLCLIPYYCWFYS 166 (219)
Q Consensus 89 ~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~--~l~G~~~t~aD~~l~~~l~~~~~ 166 (219)
+..++++..|+++.. ............+...+.....+.+.+..++++|+++. |++|++||+||+++++.+..+..
T Consensus 3 ~~~~a~i~~W~~f~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~AD~~v~~~l~~~~~ 80 (99)
T PF14497_consen 3 PYWRALIDRWLDFSV--AFRRRKARLEKDEASGDFSREELPKALKILEKHLAERGGDFLVGDKPTLADIAVFGFLASLRW 80 (99)
T ss_dssp -TTHHHHHHHHH-GH--CCHCCHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--HHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHhccc--hhhhHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCHHHHHHHHHHHHHhh
Confidence 445777888888541 00000000111244667888899999999999997665 99999999999999999866442
Q ss_pred hhhhcCccccccCchHHHHHHHHhc
Q 027727 167 YETFGKFSVEAECPKFIAWVTRCLQ 191 (219)
Q Consensus 167 ~~~~~~~~~~~~~p~l~~~~~~~~~ 191 (219)
. .+.+.+|+|.+|+++|++
T Consensus 81 -----~-~~~~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 81 -----A-DFPKDYPNLVRWYERIEE 99 (99)
T ss_dssp -----C-HHTTTCHHHHHHHHHHHT
T ss_pred -----c-ccccccHHHHHHHHhhcC
Confidence 1 122689999999999974
No 94
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=99.24 E-value=2.5e-11 Score=81.32 Aligned_cols=92 Identities=24% Similarity=0.467 Sum_probs=71.2
Q ss_pred HHHHHHhhhhcccchhhhhcc-------ChHHHHHHHHHHHHHHHHHHcccCCCCcccCCCcchhhhhhhhhhhhhhhhh
Q 027727 96 RFWVDFIDKKMYDTSRKTWAT-------KGEEQEAAKKEFIEVLKTLGGELGDKPFFGGDNFGYVDLCLIPYYCWFYSYE 168 (219)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~ 168 (219)
+.|+.+.+..+.+.+...... +++..+...+.+.+.++.||++|++++|++|+++|+||+++++.+.++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~t~aDi~~~~~l~~~~~~~ 81 (100)
T cd00299 2 RAWEEWADTTLEPAARRLLLLAFVGPEVDEAALEEAREELAAALAALEKLLAGRPYLAGDRFSLADIALAPVLARLDLLG 81 (100)
T ss_pred hHHHHHHHhhcCCcccceeeeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcCHHHHHHHHHHHHHHHhh
Confidence 467777777766555544332 2556778888999999999999998999999999999999999999987543
Q ss_pred hhcCccccccCchHHHHHHHH
Q 027727 169 TFGKFSVEAECPKFIAWVTRC 189 (219)
Q Consensus 169 ~~~~~~~~~~~p~l~~~~~~~ 189 (219)
...+ ....+|++.+|++++
T Consensus 82 ~~~~--~~~~~p~l~~~~~~~ 100 (100)
T cd00299 82 PLLG--LLDEYPRLAAWYDRL 100 (100)
T ss_pred hhhh--hhccCccHHHHHHhC
Confidence 2111 237899999999874
No 95
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.23 E-value=5e-11 Score=82.33 Aligned_cols=72 Identities=21% Similarity=0.316 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHccc---CCCCcccCCCcchhhhhhhhhhhhhhhhhhhcCccccccCchHHHHHHHHhcccchhc
Q 027727 121 QEAAKKEFIEVLKTLGGEL---GDKPFFGGDNFGYVDLCLIPYYCWFYSYETFGKFSVEAECPKFIAWVTRCLQRETVAK 197 (219)
Q Consensus 121 ~~~~~~~l~~~l~~le~~L---~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~ 197 (219)
.+.....+.+.++.+|..+ ++++|++|+ +|+||+++++.+.+... .+... .|+|++|++++.++|++++
T Consensus 39 ~~~~~~~~~~~~~~le~~l~~~~~~~yl~Gd-~T~ADi~l~~~~~~~~~----~~~~~---~P~l~~~~~rv~~rPsv~~ 110 (114)
T cd03194 39 SEAVQADIARIEAIWAECLARFQGGPFLFGD-FSIADAFFAPVVTRFRT----YGLPL---SPAAQAYVDALLAHPAMQE 110 (114)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CcHHHHHHHHHHHHHHH----cCCCC---CHHHHHHHHHHHCCHHHHH
Confidence 3444455555666666555 567899999 99999999999988753 23332 2999999999999999998
Q ss_pred cCC
Q 027727 198 ALP 200 (219)
Q Consensus 198 ~~~ 200 (219)
.++
T Consensus 111 ~~~ 113 (114)
T cd03194 111 WIA 113 (114)
T ss_pred HHh
Confidence 764
No 96
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.20 E-value=7.2e-11 Score=76.03 Aligned_cols=72 Identities=18% Similarity=0.254 Sum_probs=63.4
Q ss_pred CceEEecccCCchhHHHHHHHHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHH
Q 027727 3 DEVILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYID 75 (219)
Q Consensus 3 ~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~ 75 (219)
.+++||+.++||+|.+++.+|...|++|+.+.++......++...++. .++|++..||..+.++..|.+||+
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~-~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGA-TTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCC-CCcCeEEECCEEEcCHHHHHHHhC
Confidence 569999999999999999999999999999988765444566667776 799999999999999999999984
No 97
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=99.18 E-value=7.3e-11 Score=80.05 Aligned_cols=95 Identities=21% Similarity=0.242 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhhhhcccchhhhhcc------ChHHHHHHHHHHHHHHHHHHcccCC--CCcccCCCcchhhhhhhhhhh
Q 027727 91 QRAQARFWVDFIDKKMYDTSRKTWAT------KGEEQEAAKKEFIEVLKTLGGELGD--KPFFGGDNFGYVDLCLIPYYC 162 (219)
Q Consensus 91 ~~a~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~l~~~l~~le~~L~~--~~~l~G~~~t~aD~~l~~~l~ 162 (219)
++++++.+++..++.. ..+...+.. .+.........+.+.++.||++|++ ++|++|+++|+||+++++.+.
T Consensus 2 e~~~v~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~G~~~s~aDi~l~~~~~ 80 (104)
T cd03192 2 EAARVDALVDTIADLR-AEFAKYFYEKDGEEKKEKKKEFLKEAIPKYLKKLEKILKENGGGYLVGDKLTWADLVVFDVLD 80 (104)
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHhhcCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCeeeCCCccHHHHHHHHHHH
Confidence 4677788877754433 333333332 1455667778899999999999976 899999999999999999998
Q ss_pred hhhhhhhhcCccccccCchHHHHHHHH
Q 027727 163 WFYSYETFGKFSVEAECPKFIAWVTRC 189 (219)
Q Consensus 163 ~~~~~~~~~~~~~~~~~p~l~~~~~~~ 189 (219)
++.... ...+...+|+|++|++++
T Consensus 81 ~~~~~~---~~~~~~~~p~l~~~~~~~ 104 (104)
T cd03192 81 YLLYLD---PKLLLKKYPKLKALRERV 104 (104)
T ss_pred HHHhhC---chhhHHhChhHHHHHHhC
Confidence 876422 111147899999999875
No 98
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.17 E-value=8.1e-11 Score=82.54 Aligned_cols=68 Identities=29% Similarity=0.547 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHcccCCCCcccCCCcchhhhhhhhhhhhhhhhhhhcCccccccCchHHHHHHHHhc
Q 027727 121 QEAAKKEFIEVLKTLGGELGDKPFFGGDNFGYVDLCLIPYYCWFYSYETFGKFSVEAECPKFIAWVTRCLQ 191 (219)
Q Consensus 121 ~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 191 (219)
.+.....+.+.|+.+|++|++++|++|+++|+||+++++.+.++.. ..+..+..++|+|.+|++++.+
T Consensus 56 ~~~~~~~~~~~l~~l~~~L~~~~fl~Gd~~t~AD~~l~~~l~~~~~---~~~~~~~~~~p~l~~W~~r~~~ 123 (124)
T cd03202 56 REAALANFRAALEPLRATLKGQPFLGGAAPNYADYIVFGGFQWARI---VSPFPLLEEDDPVYDWFERCLD 123 (124)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCccCCCCCchhHHHHHHHHHHHHH---cCcccccccCChHHHHHHHHhc
Confidence 4577788999999999999999999999999999999999988764 2234444789999999999976
No 99
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=2.8e-09 Score=83.36 Aligned_cols=169 Identities=22% Similarity=0.233 Sum_probs=121.4
Q ss_pred CchhHHHHHHHHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEEe-CCeeeehhHHHHHHHHhhcCCCCCCCCC-CHH
Q 027727 13 SMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIH-NGKSVCESSIIVQYIDEVWKDKAPLLPY-DPY 90 (219)
Q Consensus 13 s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~-~g~~l~es~~I~~yL~~~~~~~~~l~p~-~~~ 90 (219)
++-|.++.+++++.+-|.+++..+.... .|. |++|+|+. +|+.+++-.-|..+|..... +-.+-+. ...
T Consensus 17 d~~sL~~l~y~kl~~~~l~v~~ssN~~~-------s~s-g~LP~l~~~ng~~va~~~~iv~~L~k~~~-ky~~d~dl~~k 87 (313)
T KOG3028|consen 17 DPDSLAALIYLKLAGAPLKVVVSSNPWR-------SPS-GKLPYLITDNGTKVAGPVKIVQFLKKNTK-KYNLDADLSAK 87 (313)
T ss_pred ChhHHHHHHHHHHhCCCceeEeecCCCC-------CCC-CCCCeEEecCCceeccHHHHHHHHHHhcc-cCCcCccHHHH
Confidence 7789999999999997777766554322 565 89999995 67999999999999987432 1112222 255
Q ss_pred HHHHHHHHHHHhhhhcccchhhhhc------------------------------------------c-ChHHHHHHHHH
Q 027727 91 QRAQARFWVDFIDKKMYDTSRKTWA------------------------------------------T-KGEEQEAAKKE 127 (219)
Q Consensus 91 ~~a~~~~~~~~~~~~l~~~~~~~~~------------------------------------------~-~~~~~~~~~~~ 127 (219)
+.++...|++++.+.+.+++..-+. + .....++....
T Consensus 88 q~a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~~i~~~ 167 (313)
T KOG3028|consen 88 QLADTLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTEREDQIYKD 167 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHHHHHHH
Confidence 6788888888888887665332110 0 01123455566
Q ss_pred HHHHHHHHHcccCCCCcccCCCcchhhhhhhhhhhhhhhhhhhcCccc---cccCchHHHHHHHHhc
Q 027727 128 FIEVLKTLGGELGDKPFFGGDNFGYVDLCLIPYYCWFYSYETFGKFSV---EAECPKFIAWVTRCLQ 191 (219)
Q Consensus 128 l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~---~~~~p~l~~~~~~~~~ 191 (219)
..+++..|.+.|+.++|++|++||-.|..++..+..+-.++ .....+ ...++||.+|++++.+
T Consensus 168 Aska~~~LS~~Lgs~kffFgd~psslDa~lfs~la~~~~~~-Lp~~~Lq~~l~~~~NL~~~~~~i~s 233 (313)
T KOG3028|consen 168 ASKALNLLSTLLGSKKFFFGDKPSSLDALLFSYLAILLQVA-LPNDSLQVHLLAHKNLVRYVERIRS 233 (313)
T ss_pred HHHHHHHHHHHhcCceEeeCCCCchHHHHHHHHHHHHHhcc-CCchhHHHHHHhcchHHHHHHHHHH
Confidence 78899999999999999999999999999999998843221 111111 2459999999999876
No 100
>PRK10638 glutaredoxin 3; Provisional
Probab=99.13 E-value=2.9e-10 Score=73.93 Aligned_cols=73 Identities=16% Similarity=0.167 Sum_probs=63.7
Q ss_pred CCCceEEecccCCchhHHHHHHHHHhCCCceeEEccCCC-CChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHH
Q 027727 1 MADEVILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFN-KSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYID 75 (219)
Q Consensus 1 M~~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~ 75 (219)
|+ ++++|+.+.||||++++.+|..+|++|+.+.++... ..+++...++. .++|+++.||..+.+...+..+-.
T Consensus 1 m~-~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~-~~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 1 MA-NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGR-TTVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred CC-cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEeCHHHHHHHHH
Confidence 66 699999999999999999999999999999997653 45677888998 899999999999999887776643
No 101
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=99.11 E-value=2.7e-10 Score=74.90 Aligned_cols=68 Identities=22% Similarity=0.226 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHcccCCCCcccCCCcchhhhhhhhhhhhhhhhhhhcCc---cccccCchHHHHHHHHh
Q 027727 122 EAAKKEFIEVLKTLGGELGDKPFFGGDNFGYVDLCLIPYYCWFYSYETFGKF---SVEAECPKFIAWVTRCL 190 (219)
Q Consensus 122 ~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~---~~~~~~p~l~~~~~~~~ 190 (219)
......+.+.++.+|++|++++|++|+++|+||+++++.+.++.... .... .....+|+|++|++++.
T Consensus 18 ~~~~~~~~~~l~~le~~L~~~~yl~Gd~~t~aDi~l~~~l~~~~~~~-~~~~~~~~~~~~~p~l~~~~~r~~ 88 (88)
T cd03193 18 REIYSLAKKDLKALSDLLGDKKFFFGDKPTSLDATVFGHLASILYAP-LPNSALQLILKEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHHHHHHHhcC-CCChHHHHHHHhCcHHHHHHHHhC
Confidence 36678899999999999999999999999999999999998865321 1110 01267999999999874
No 102
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.07 E-value=7.3e-10 Score=70.02 Aligned_cols=57 Identities=18% Similarity=0.254 Sum_probs=49.2
Q ss_pred CchhHHHHHHHHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHHhh
Q 027727 13 SMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDEV 77 (219)
Q Consensus 13 s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~~~ 77 (219)
||+|.++.++|+..|++|+.+..... ..+|. |++|+|+++|+.+.||..|++||.++
T Consensus 16 sp~clk~~~~Lr~~~~~~~v~~~~n~-------~~sp~-gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 16 DPECLAVLAYLKFAGAPLKVVPSNNP-------WRSPT-GKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CHHHHHHHHHHHcCCCCEEEEecCCC-------CCCCC-CccCEEEECCEEecChHHHHHHHHHc
Confidence 79999999999999999988744321 34687 99999999999999999999999764
No 103
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.03 E-value=1.4e-09 Score=68.64 Aligned_cols=71 Identities=21% Similarity=0.236 Sum_probs=60.5
Q ss_pred ceEEecccCCchhHHHHHHHHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHH
Q 027727 4 EVILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYID 75 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~ 75 (219)
+++||+.++||+|.+++-+|...|++|+.+.++.......+...... .++|++..||..+.++..|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~-~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGA-MTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCC-CCcCeEEECCEEEeCHHHHHHHhC
Confidence 58999999999999999999999999999988755433344455665 689999999999999999999974
No 104
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.90 E-value=5.1e-09 Score=70.21 Aligned_cols=67 Identities=19% Similarity=0.285 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHHHHHHHcccCCCCcccCCCcchhhhhhhhhhhhhhhhhhhcCccccccCchHHHHHHHH
Q 027727 118 GEEQEAAKKEFIEVLKTLGGELGDKPFFGGDNFGYVDLCLIPYYCWFYSYETFGKFSVEAECPKFIAWVTRC 189 (219)
Q Consensus 118 ~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~ 189 (219)
++..+.....+.+.|+.+|++|++++| +++|+||+++++.+.+.... ..+.....++|+|++|++++
T Consensus 32 ~~~~~~~~~~~~~~l~~le~~L~~~~~---d~~TlADi~l~~~l~~~~~~--~~~~~~~~~~p~l~~w~~rm 98 (98)
T cd03205 32 QPWLERQRGKIERALDALEAELAKLPL---DPLDLADIAVACALGYLDFR--HPDLDWRAAHPALAAWYARF 98 (98)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhCCC---CCCCHHHHHHHHHHHHHHhH--ccCcchhhhChHHHHHHHhC
Confidence 556788889999999999999988888 89999999999999887531 12233347899999999875
No 105
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=98.88 E-value=5.5e-09 Score=74.39 Aligned_cols=65 Identities=22% Similarity=0.275 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHccc-CCCCcccCCCcchhhhhhhhhhhhhhhhhhhcCc-cccccCchHHHHHHHHhc
Q 027727 123 AAKKEFIEVLKTLGGEL-GDKPFFGGDNFGYVDLCLIPYYCWFYSYETFGKF-SVEAECPKFIAWVTRCLQ 191 (219)
Q Consensus 123 ~~~~~l~~~l~~le~~L-~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~-~~~~~~p~l~~~~~~~~~ 191 (219)
...+.|...++.+-+.+ ++++|+.|++||+||+++++.+..+..+ .++ ++ .++|++.+|++++++
T Consensus 79 D~r~~L~~a~~~w~~~~~~~~~FlaGd~ptIADisvyg~l~s~e~~---~~~~Dl-~~~p~I~~W~eRm~~ 145 (149)
T cd03197 79 DVREWLYDALNTWVAALGKDRQFHGGSKPNLADLAVYGVLRSVEGH---PAFKDM-VEETKIGEWYERMDA 145 (149)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCccCCCCCCHHHHHHHHHHHHHHHh---ccccch-hhCcCHHHHHHHHHH
Confidence 34455555555544445 4578999999999999999999887753 244 44 689999999999986
No 106
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.81 E-value=5.3e-09 Score=73.46 Aligned_cols=71 Identities=15% Similarity=0.229 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHcccCCCCcccCCCcchhhhhhhhhhhhhhhhh-hhcCcc-ccccCchHHHHHHHHh
Q 027727 120 EQEAAKKEFIEVLKTLGGELGDKPFFGGDNFGYVDLCLIPYYCWFYSYE-TFGKFS-VEAECPKFIAWVTRCL 190 (219)
Q Consensus 120 ~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~-~~~~~~-~~~~~p~l~~~~~~~~ 190 (219)
..++....+.+.|+.|+..|++++|++|++||.+|+++++.+.++.... ...... ...++|||.+|++||.
T Consensus 54 ~~ee~~~~~~~~l~aLs~~Lg~~~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~~~~~~pnL~~y~~Ri~ 126 (126)
T cd03211 54 TLDQVIEEVDQCCQALSQRLGTQPYFFGDQPTELDALVFGHLFTILTTQLPNDELAEKVKKYSNLLAFCRRIE 126 (126)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCcHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHhcC
Confidence 4567788889999999999999999999999999999999988765320 001112 1378999999999973
No 107
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.81 E-value=2e-08 Score=63.52 Aligned_cols=68 Identities=22% Similarity=0.230 Sum_probs=57.5
Q ss_pred ceEEecccCCchhHHHHHHHHHhCCCceeEEccCC-CCChhhHhhCCCCCeecEEEeCCeeeehhHHHHH
Q 027727 4 EVILLDFWASMFGIRVRIALAEKGVKYEYKEQDLF-NKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQ 72 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~ 72 (219)
+++||+.+.||+|++++.+|..+||+|+.+.++.. ...+++...++. .++|++..||..|.+-....+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~-~~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGS-SVVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEeCHHHHHh
Confidence 68999999999999999999999999999988754 234677788897 899999999988877655543
No 108
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.77 E-value=2.3e-08 Score=64.53 Aligned_cols=62 Identities=16% Similarity=0.228 Sum_probs=49.5
Q ss_pred ceEEecccCCchhHHHHHHHHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEEeCCeeeeh
Q 027727 4 EVILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSVCE 66 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~l~e 66 (219)
+++||+.+.||+|.+++-+|..+||+|+.+.++-.....+....++. ..||+++.+|..+.+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~-~~vPvv~i~~~~~~G 63 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQGF-RQLPVVIAGDLSWSG 63 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCC-CCcCEEEECCEEEec
Confidence 58999999999999999999999999999988754322233344687 799999988765543
No 109
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.75 E-value=3.5e-08 Score=62.09 Aligned_cols=70 Identities=14% Similarity=0.155 Sum_probs=55.9
Q ss_pred ceEEecccCCchhHHHHHHHHHhCCCceeEEccCCC-CChhhHhhCCCCCeecEEEeCCeee--ehhHHHHHHH
Q 027727 4 EVILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFN-KSPLLLRMNPVHKKIPVLIHNGKSV--CESSIIVQYI 74 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~~g~~l--~es~~I~~yL 74 (219)
+++||+.++||+|++++.++...|++|..+.++... ..+++...++. ..+|+++.+|..+ +++..|-++|
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~-~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQ-RGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCC-CcccEEEECCEEEeeCCHHHHHHHh
Confidence 378999999999999999999999999988776442 23456677887 8999999888877 5556666554
No 110
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=98.73 E-value=8.7e-08 Score=64.38 Aligned_cols=105 Identities=19% Similarity=0.192 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHHHhhhhcccchhh-----hhcc--ChHHHHHHHHHHHHHHHHHHcccC-CCCcccCCCcchhhhhhhh
Q 027727 88 DPYQRAQARFWVDFIDKKMYDTSRK-----TWAT--KGEEQEAAKKEFIEVLKTLGGELG-DKPFFGGDNFGYVDLCLIP 159 (219)
Q Consensus 88 ~~~~~a~~~~~~~~~~~~l~~~~~~-----~~~~--~~~~~~~~~~~l~~~l~~le~~L~-~~~~l~G~~~t~aD~~l~~ 159 (219)
|..+|++.++...++.+.+.+.=.. .+.+ ..+..+.....+.+.+...+..|. +++||.| +.|+||..+++
T Consensus 1 D~~~RArAR~vqAwlrSdf~~lR~Erpt~vvf~~~~~~pLs~~a~~~a~kL~~~a~~ll~~g~~~LFG-ewsIAD~dlA~ 79 (117)
T PF14834_consen 1 DRQERARARQVQAWLRSDFMALRQERPTNVVFRGARKPPLSEAAQAAAQKLIAVAERLLADGGPNLFG-EWSIADADLAL 79 (117)
T ss_dssp SHHHHHHHHHHHHHHHHS-HHHHHHS-THHHHS--------HHHHHHHHHHHHHHHHHTTT--SSTTS-S--HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcccHHHHhhCChhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCccc-cchHHHHHHHH
Confidence 4578999999999999988654221 2232 245677788888999999999884 5789998 69999999999
Q ss_pred hhhhhhhhhhhcCccccccCchHHHHHHHHhcccchhccCC
Q 027727 160 YYCWFYSYETFGKFSVEAECPKFIAWVTRCLQRETVAKALP 200 (219)
Q Consensus 160 ~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~ 200 (219)
++.++.. .|.+++ +.++.|.++.-++|++++.+.
T Consensus 80 ml~Rl~~----~gd~vP---~~l~~Ya~~qwqrpsVQ~Wla 113 (117)
T PF14834_consen 80 MLNRLVT----YGDPVP---ERLADYAERQWQRPSVQRWLA 113 (117)
T ss_dssp HHHHHHT----TT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHH----cCCCCC---HHHHHHHHHHHCCHHHHHHHH
Confidence 9999874 355555 779999999999999998653
No 111
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=98.72 E-value=1.7e-08 Score=71.84 Aligned_cols=72 Identities=22% Similarity=0.368 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHcccCCCCcccCCCcchhhhhhhhhhhhhhhhhhhcC--c-cccccCchHHHHHHHHhc
Q 027727 119 EEQEAAKKEFIEVLKTLGGELGDKPFFGGDNFGYVDLCLIPYYCWFYSYETFGK--F-SVEAECPKFIAWVTRCLQ 191 (219)
Q Consensus 119 ~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~--~-~~~~~~p~l~~~~~~~~~ 191 (219)
...++....+.+.++.|++.|++++|++|+++|.+|+++++.+..+.... ... . .....+|+|.+|++|+.+
T Consensus 60 ~~~~~~~~~a~~~l~~l~~~L~~~~~~~Gd~~t~~D~~~~~~l~~~~~~~-~~~~~l~~~~~~~pnL~~~~~ri~~ 134 (137)
T cd03212 60 EVEAEIYRDAKECLNLLSQRLGESQFFFGDTPTSLDALVFGYLAPLLKAP-LPNNKLQNHLKQCPNLCRFCDRILS 134 (137)
T ss_pred hhHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcHHHHHHHHHHHHHHhcc-CCChHHHHHHHHCcHHHHHHHHHHH
Confidence 34667778889999999999999999999999999999999987764211 111 0 113789999999999975
No 112
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.72 E-value=5.8e-08 Score=60.70 Aligned_cols=69 Identities=13% Similarity=0.131 Sum_probs=59.0
Q ss_pred ceEEecccCCchhHHHHHHHHHhCCCceeEEccCCC-CChhhHhhCCCCCeecEEEeCCeeeehhHHHHHH
Q 027727 4 EVILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFN-KSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQY 73 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~y 73 (219)
++++|+.+.||+|++++.+|..+|++|+.+.++... ...++...++. .++|++..+|..+.++..|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~-~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGW-PTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEecHHHHHHh
Confidence 478999999999999999999999999988876543 34666778897 8999999999999999887654
No 113
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.71 E-value=4e-08 Score=61.74 Aligned_cols=63 Identities=17% Similarity=0.217 Sum_probs=53.1
Q ss_pred ceEEecccCCchhHHHHHHHHHhCCCceeEEccCC-CCChhhHhhCCCCCeecEEEeCCeeeehh
Q 027727 4 EVILLDFWASMFGIRVRIALAEKGVKYEYKEQDLF-NKSPLLLRMNPVHKKIPVLIHNGKSVCES 67 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~l~~~g~~l~es 67 (219)
++++|+.++||+|.+++.+|..+|++|..+.++.. ...+++...+|. +.+|+++.+|..+.+.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~-~~vP~i~~~~~~i~g~ 64 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGY-RSVPVVVIGDEHLSGF 64 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCC-cccCEEEECCEEEecC
Confidence 37899999999999999999999999999888764 234567788897 8999999888776654
No 114
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.61 E-value=2e-07 Score=59.17 Aligned_cols=70 Identities=14% Similarity=0.145 Sum_probs=56.0
Q ss_pred ceEEecccCCchhHHHHHHHHHhCCCceeEEccCC-CCChhhHhhCCCCC-eecEEEeCCeeeehhHHHHHHH
Q 027727 4 EVILLDFWASMFGIRVRIALAEKGVKYEYKEQDLF-NKSPLLLRMNPVHK-KIPVLIHNGKSVCESSIIVQYI 74 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~-~vP~l~~~g~~l~es~~I~~yL 74 (219)
+++||+.+.||+|.+++-+|..+|++|+.+.++.. +...++...... . .+|++..+|..+.+...+.++-
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~-~~~vP~v~i~g~~igg~~~~~~~~ 72 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGG-RRTVPQIFIGDVHIGGCDDLYALE 72 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCC-CCccCEEEECCEEEeChHHHHHHH
Confidence 47899999999999999999999999999988754 222334344443 3 8999999999999988887764
No 115
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.58 E-value=1.3e-07 Score=60.11 Aligned_cols=64 Identities=13% Similarity=0.188 Sum_probs=51.3
Q ss_pred ceEEecccCCchhHHHHHHHHHhCCCceeEEccCCC-CChhhHhhC-CCCCeecEEE-eCCeeeehhH
Q 027727 4 EVILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFN-KSPLLLRMN-PVHKKIPVLI-HNGKSVCESS 68 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~-p~~~~vP~l~-~~g~~l~es~ 68 (219)
+++||+.++||+|++++-+|...|++|+.+.++-.. ....+...+ +. ..+|+++ ++|.++.++.
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~-~~vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGN-MTVPTVKFADGSFLTNPS 67 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCC-ceeCEEEECCCeEecCCC
Confidence 478999999999999999999999999988776543 234555666 76 7999997 5777777654
No 116
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=6.9e-07 Score=57.42 Aligned_cols=69 Identities=20% Similarity=0.228 Sum_probs=54.9
Q ss_pred ceEEecccCCchhHHHHHHHHHhCCCceeEEccCCC--CChhhH-hhCCCCCeecEEEeCCeeeehhHHHHHH
Q 027727 4 EVILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFN--KSPLLL-RMNPVHKKIPVLIHNGKSVCESSIIVQY 73 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~--~~~~~~-~~~p~~~~vP~l~~~g~~l~es~~I~~y 73 (219)
++++|+.+.||||.++.-+|..+|++|+.+.++... ...++. ..++. .+||+++.||..+......-++
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~-~tvP~I~i~~~~igg~~d~~~~ 73 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQ-RTVPQIFIGGKHVGGCDDLDAL 73 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCC-CCcCEEEECCEEEeCcccHHHH
Confidence 489999999999999999999999999999888765 333444 44577 7999999999877655444443
No 117
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.46 E-value=7.1e-07 Score=57.23 Aligned_cols=71 Identities=14% Similarity=0.100 Sum_probs=58.0
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEccCCC-CChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHHh
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFN-KSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDE 76 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~~ 76 (219)
+++|+.+.||+|.+++-+|+.+|++|+.+.++... ...++...... ..+|++..+|..+.+...+..+-.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~-~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGR-RTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCC-CCcCEEEECCEEEcChHHHHHHHHc
Confidence 57999999999999999999999999999887542 23455555565 6899999999999888887776543
No 118
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.45 E-value=4.7e-07 Score=57.03 Aligned_cols=57 Identities=16% Similarity=0.260 Sum_probs=45.0
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEEeCCe
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGK 62 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~ 62 (219)
+++|+.+.||+|++++-+|..+|++|+.+.++-.....+.....+. ..||+++.+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~-~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGF-RQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCC-cccCEEEECCC
Confidence 5799999999999999999999999999988754322233334566 68999997654
No 119
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.36 E-value=5e-07 Score=54.72 Aligned_cols=59 Identities=22% Similarity=0.310 Sum_probs=48.9
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEccCC-CCChhhHhhCCCCCeecEEEeCCeee
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQDLF-NKSPLLLRMNPVHKKIPVLIHNGKSV 64 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~l~~~g~~l 64 (219)
+++|+.+.||+|.+++-+|...|++|+.+.++.. ....++...... ..+|++..||..|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~-~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGV-RTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSS-SSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCC-CccCEEEECCEEC
Confidence 5799999999999999999999999999999876 334555555455 6899999988764
No 120
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.33 E-value=4.8e-06 Score=55.80 Aligned_cols=70 Identities=19% Similarity=0.165 Sum_probs=57.0
Q ss_pred CceEEecccCCchhHHHHHHHHHhCCCceeEEccCCCCCh----hhHhhCCCCCeecEEEeCCeeeehhHHHHHH
Q 027727 3 DEVILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFNKSP----LLLRMNPVHKKIPVLIHNGKSVCESSIIVQY 73 (219)
Q Consensus 3 ~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~----~~~~~~p~~~~vP~l~~~g~~l~es~~I~~y 73 (219)
+++++|+.++||||.+++-+|...|++|+.+.++...... .+...... ..+|.+..+|..|.+...+...
T Consensus 8 ~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~-~tvP~Vfi~g~~iGG~ddl~~l 81 (99)
T TIGR02189 8 KAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCS-PAVPAVFVGGKLVGGLENVMAL 81 (99)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCC-CCcCeEEECCEEEcCHHHHHHH
Confidence 5689999999999999999999999999999998553322 34445565 6899999999999887776664
No 121
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.30 E-value=5.3e-06 Score=53.39 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=59.7
Q ss_pred ceEEecccCCchhHHHHHHHHHhCCCceeEEccCCCCC----hhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHHh
Q 027727 4 EVILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFNKS----PLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDE 76 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~----~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~~ 76 (219)
++++|+.+.||+|.+++-+|...+++|+.+.++..... ..+.+.+.. ..+|++..+|..+.++..|.++..+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~-~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQ-RTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCC-CCCCeEEECCEEEcCHHHHHHHHHc
Confidence 47899999999999999999999999999988876432 234455665 6899999999999999999887754
No 122
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.27 E-value=5.6e-06 Score=53.86 Aligned_cols=75 Identities=15% Similarity=0.235 Sum_probs=60.0
Q ss_pred ceEEecccCCchhHHHHHHHHH-----hCCCceeEEccCCC-CChhhHhhC--CCCCeecEEEeCCeeeehhHHHHHHHH
Q 027727 4 EVILLDFWASMFGIRVRIALAE-----KGVKYEYKEQDLFN-KSPLLLRMN--PVHKKIPVLIHNGKSVCESSIIVQYID 75 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~-----~gi~~~~~~v~~~~-~~~~~~~~~--p~~~~vP~l~~~g~~l~es~~I~~yL~ 75 (219)
++++|+.++||+|.+++-+|.. .|++|+.+.++... ...++.... +. ..||++..||..+.+...|.+++.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~-~~vP~ifi~g~~igg~~~~~~~~~ 80 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPV-ETVPQIFVDQKHIGGCTDFEAYVK 80 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCC-CcCCEEEECCEEEcCHHHHHHHHH
Confidence 4899999999999999999999 89999998887532 123343322 22 379999999999999999999998
Q ss_pred hhcC
Q 027727 76 EVWK 79 (219)
Q Consensus 76 ~~~~ 79 (219)
..++
T Consensus 81 ~~~~ 84 (85)
T PRK11200 81 ENLG 84 (85)
T ss_pred Hhcc
Confidence 7664
No 123
>PHA03050 glutaredoxin; Provisional
Probab=98.25 E-value=7.8e-06 Score=55.64 Aligned_cols=69 Identities=13% Similarity=0.181 Sum_probs=56.4
Q ss_pred CceEEecccCCchhHHHHHHHHHhCC---CceeEEccCCCC----ChhhHhhCCCCCeecEEEeCCeeeehhHHHHH
Q 027727 3 DEVILLDFWASMFGIRVRIALAEKGV---KYEYKEQDLFNK----SPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQ 72 (219)
Q Consensus 3 ~~~~L~~~~~s~~~~~v~~~l~~~gi---~~~~~~v~~~~~----~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~ 72 (219)
.++++|..++||||.+++-+|...|+ +|+.+.++-... ..++...+.. .+||.+..+|..|-+...+..
T Consensus 13 ~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~-~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 13 NKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGG-RTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCC-CCcCEEEECCEEEeChHHHHH
Confidence 57999999999999999999999999 788888875322 3455666676 689999999999888776665
No 124
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.16 E-value=1.2e-05 Score=52.41 Aligned_cols=74 Identities=14% Similarity=0.204 Sum_probs=56.0
Q ss_pred eEEecccCCchhHHHHHHHHHhC-----CCceeEEccCCC-CChhhHhhCC--CCCeecEEEeCCeeeehhHHHHHHHHh
Q 027727 5 VILLDFWASMFGIRVRIALAEKG-----VKYEYKEQDLFN-KSPLLLRMNP--VHKKIPVLIHNGKSVCESSIIVQYIDE 76 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~g-----i~~~~~~v~~~~-~~~~~~~~~p--~~~~vP~l~~~g~~l~es~~I~~yL~~ 76 (219)
+++|+.++||||.+++-+|..++ ++|+.+.++... ...++..... . ..||++..||..+.++..|.+++.+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~-~tVP~ifi~g~~igG~~dl~~~~~~ 80 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPV-ETVPQIFVDEKHVGGCTDFEQLVKE 80 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCC-CCcCeEEECCEEecCHHHHHHHHHh
Confidence 58999999999999999999985 556666665321 1233433322 2 3799999999999999999999987
Q ss_pred hcC
Q 027727 77 VWK 79 (219)
Q Consensus 77 ~~~ 79 (219)
.++
T Consensus 81 ~~~ 83 (86)
T TIGR02183 81 NFD 83 (86)
T ss_pred ccc
Confidence 665
No 125
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.06 E-value=4e-05 Score=49.41 Aligned_cols=71 Identities=21% Similarity=0.292 Sum_probs=57.0
Q ss_pred eEEecccCCchhHHHHHHHHHhCCC--ceeEEccCCCCCh----hhHhhCCCCCeecEEEeCCeeeehhHHHHHHHHh
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVK--YEYKEQDLFNKSP----LLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDE 76 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~--~~~~~v~~~~~~~----~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~~ 76 (219)
+++|+.++||+|.+++-+|...+++ |+.+.++...... .+...... ..+|.+..+|..+.++..+.++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~-~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQ-RTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCC-CCCCeEEECCEEEcCHHHHHHHHHc
Confidence 4689999999999999999999999 8888887653332 24455555 5899999999999999888877643
No 126
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.02 E-value=3.1e-05 Score=51.68 Aligned_cols=71 Identities=21% Similarity=0.154 Sum_probs=54.0
Q ss_pred CceEEecc-----cCCchhHHHHHHHHHhCCCceeEEccCCC-CChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHH
Q 027727 3 DEVILLDF-----WASMFGIRVRIALAEKGVKYEYKEQDLFN-KSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYI 74 (219)
Q Consensus 3 ~~~~L~~~-----~~s~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL 74 (219)
+++.+|.. +.||||.+++-+|..+|++|+.+.++-.. ...++...+.. ..+|.+..||..|.+...+.+..
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~-~tvP~vfi~g~~iGG~ddl~~l~ 88 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNW-PTIPQLYVKGEFVGGCDIIMEMY 88 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCC-CCCCEEEECCEEEeChHHHHHHH
Confidence 56788854 78999999999999999999988775321 12333455665 68999999999988877776644
No 127
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=98.00 E-value=2.7e-05 Score=48.82 Aligned_cols=55 Identities=22% Similarity=0.272 Sum_probs=47.8
Q ss_pred CCchhHHHHHHHHHhCCC---ceeEEccCCCCChhhHhhCCCCCeecEEEe-CCeeeehhHHHHHHH
Q 027727 12 ASMFGIRVRIALAEKGVK---YEYKEQDLFNKSPLLLRMNPVHKKIPVLIH-NGKSVCESSIIVQYI 74 (219)
Q Consensus 12 ~s~~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~-~g~~l~es~~I~~yL 74 (219)
.+|-|.++.++|+..+.+ |+.+..+.. ..+|. |++|+|.+ +++.+.+-..|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n~-------~~Spt-g~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNNP-------WLSPT-GELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCCC-------CcCCC-CCCCEEEECCCcEEECHHHHHHhh
Confidence 478999999999999999 887766532 35787 99999998 899999999999998
No 128
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.99 E-value=4e-05 Score=50.41 Aligned_cols=71 Identities=20% Similarity=0.119 Sum_probs=55.2
Q ss_pred CceEEecc-----cCCchhHHHHHHHHHhCCCceeEEccCCC-CChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHH
Q 027727 3 DEVILLDF-----WASMFGIRVRIALAEKGVKYEYKEQDLFN-KSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYI 74 (219)
Q Consensus 3 ~~~~L~~~-----~~s~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL 74 (219)
.++++|.. +.||||.+++-+|...|++|+.+.++... ...+....... .++|.+..||..|.+...+....
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~-~tvP~vfi~g~~iGG~~~l~~l~ 84 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNW-PTFPQLYVNGELVGGCDIVKEMH 84 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCC-CCCCEEEECCEEEeCHHHHHHHH
Confidence 45778854 58999999999999999999999886432 22344455665 68999999999998888777754
No 129
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=97.64 E-value=0.00013 Score=51.19 Aligned_cols=68 Identities=18% Similarity=0.147 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHcccCCCCcccCCCcchhhhhhhhhhhhhhhhhhhcCccccccCchHHHHHHHHhcccch
Q 027727 121 QEAAKKEFIEVLKTLGGELGDKPFFGGDNFGYVDLCLIPYYCWFYSYETFGKFSVEAECPKFIAWVTRCLQRETV 195 (219)
Q Consensus 121 ~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~ 195 (219)
..+...+++..|..||..+......- +++|+.|+.+|+.|..+.. ..|+.++ |++.+|++++.+.-.+
T Consensus 57 t~~~i~~l~~~L~~Le~ll~~~~~~n-~~LS~dDi~lFp~LR~Lti---vkgi~~P---~~V~~Y~~~~s~~t~V 124 (132)
T PF04399_consen 57 TPELIAELNADLEELEPLLASPNAVN-GELSIDDIILFPILRSLTI---VKGIQWP---PKVRAYMDRMSKATGV 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHHH-SCTTBTT-SS--HHHHHHHHHHHHHCT---CTTS------HHHHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHHHHHHhccccccC-CCCCHHHHHHHHHHhhhhh---ccCCcCC---HHHHHHHHHHHHHcCC
Confidence 56777888999999999998544444 4999999999999999887 6677777 8999999999876543
No 130
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=9.9e-06 Score=68.14 Aligned_cols=125 Identities=17% Similarity=0.201 Sum_probs=87.3
Q ss_pred ecEEEeCCeeeehhHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhhhcccchhhhhccChHHHHHHHHHHHHHHH
Q 027727 54 IPVLIHNGKSVCESSIIVQYIDEVWKDKAPLLPYDPYQRAQARFWVDFIDKKMYDTSRKTWATKGEEQEAAKKEFIEVLK 133 (219)
Q Consensus 54 vP~l~~~g~~l~es~~I~~yL~~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~ 133 (219)
++....+|..+.++..+..|.++.....+.+|+.+ .++.+++.|+++....- ...+...+.
T Consensus 38 ~~~~~~d~~~l~~a~~~~~~~~~~~~~~~~lf~~~-~d~~~vd~w~~~s~~~~------------------~~~~s~~~~ 98 (712)
T KOG1147|consen 38 VDKQFLDGRKLNGATEPVVYSAALAKADPKLFGNN-IDRSQVDHWVSFSSTFS------------------FDEISSSLS 98 (712)
T ss_pred hhhhccccccccCCccchhhhhhhcccCHhHcCCc-ccHHHHHHHHHHhhhcc------------------hHHHHHHHH
Confidence 44333456677777777777765554345688876 78999999999987611 245677788
Q ss_pred HHHcccCCCCcccCCCcchhhhhhhhhhhhhhhhhhhcCccccccCchHHHHHHHHhcccchhccC
Q 027727 134 TLGGELGDKPFFGGDNFGYVDLCLIPYYCWFYSYETFGKFSVEAECPKFIAWVTRCLQRETVAKAL 199 (219)
Q Consensus 134 ~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~ 199 (219)
.|+..|.-..||+|.++|+||+++|..+....... ......+.+-++.+|++..+..+..+.+.
T Consensus 99 ~ld~~l~~~t~lvg~sls~Ad~aiw~~l~~n~~~~--~~lk~~k~~~~v~Rw~~~~~~~~a~~~v~ 162 (712)
T KOG1147|consen 99 ELDKFLVLRTFLVGNSLSIADFAIWGALHSNGMRQ--EQLKAKKDYQNVERWYDLPEFQEAHNKVL 162 (712)
T ss_pred HHHhhhhHHHHhhccchhHHHHHHHHHHhcccchH--HHHHhhCCchhhhhhcCcHhHHHHHHHHH
Confidence 88888988899999999999999999987643211 11222367788999999444444444433
No 131
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.57 E-value=0.0003 Score=59.26 Aligned_cols=70 Identities=10% Similarity=0.074 Sum_probs=54.0
Q ss_pred CCCceEEecccCCchhHHHHHHHHHhCCCceeEEccCCCCChhhH-h--------hCCCCCeecEEEeCCeeeehhHHHH
Q 027727 1 MADEVILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLL-R--------MNPVHKKIPVLIHNGKSVCESSIIV 71 (219)
Q Consensus 1 M~~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~-~--------~~p~~~~vP~l~~~g~~l~es~~I~ 71 (219)
|. ++++|+.++||+|.++.-+|..+||+|+.+.++-.....++. . .... ..||++..||..|.+-..+.
T Consensus 1 m~-~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~-~tvP~ifi~~~~igGf~~l~ 78 (410)
T PRK12759 1 MV-EVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHI-RTVPQIFVGDVHIGGYDNLM 78 (410)
T ss_pred CC-cEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCC-CccCeEEECCEEEeCchHHH
Confidence 55 599999999999999999999999999999887433222322 1 1344 58999999998888776665
Q ss_pred H
Q 027727 72 Q 72 (219)
Q Consensus 72 ~ 72 (219)
.
T Consensus 79 ~ 79 (410)
T PRK12759 79 A 79 (410)
T ss_pred H
Confidence 4
No 132
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00044 Score=42.70 Aligned_cols=63 Identities=22% Similarity=0.182 Sum_probs=50.0
Q ss_pred CCCceEEecccCCchhHHHHHHHHHhCCCceeEEccCC-----------CCChhhHh--hCCCCCeecEEE-eCCeeee
Q 027727 1 MADEVILLDFWASMFGIRVRIALAEKGVKYEYKEQDLF-----------NKSPLLLR--MNPVHKKIPVLI-HNGKSVC 65 (219)
Q Consensus 1 M~~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~-----------~~~~~~~~--~~p~~~~vP~l~-~~g~~l~ 65 (219)
|+ +.+||++..||-|....-.++-.+++|+.+++.-. +..++|.. .|.+ --+|+|. +||.++.
T Consensus 1 ms-kp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gy-iGIPall~~d~~vVl 77 (85)
T COG4545 1 MS-KPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGY-IGIPALLTDDGKVVL 77 (85)
T ss_pred CC-CceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCc-ccceEEEeCCCcEEE
Confidence 66 46999999999999999999999999999998633 45677763 3554 4599998 5777665
No 133
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=97.48 E-value=0.00033 Score=48.77 Aligned_cols=68 Identities=15% Similarity=0.104 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHcccCCCCcccCCCcchhhhhhhhhhhhhhhhhhhcCccccccCchHHHHHHHHhcccch
Q 027727 121 QEAAKKEFIEVLKTLGGELGDKPFFGGDNFGYVDLCLIPYYCWFYSYETFGKFSVEAECPKFIAWVTRCLQRETV 195 (219)
Q Consensus 121 ~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~ 195 (219)
......+++..|..++..+..... +++++|+.|+.+|+.|..+.. ..|+.++ |++.+|++++.+.-.+
T Consensus 58 t~~~i~~l~~~L~~l~~ll~~~~~-~n~~ls~DDi~lFp~LR~Lt~---vkgi~~P---~~V~~Y~~~~s~~t~V 125 (128)
T cd03199 58 TPQYIAALNALLEELDPLILSSEA-VNGQLSTDDIILFPILRNLTL---VKGLVFP---PKVKAYLERMSALTKV 125 (128)
T ss_pred cHHHHHHHHHHHHHHHHHHcCccc-cCCcCCHHHHHHHHHHhhhhh---hcCCCCC---HHHHHHHHHHHHHhCC
Confidence 346677888889999998854333 566899999999999999887 6677777 8899999999876543
No 134
>PRK10824 glutaredoxin-4; Provisional
Probab=97.46 E-value=0.00071 Score=46.40 Aligned_cols=71 Identities=17% Similarity=0.201 Sum_probs=54.6
Q ss_pred CceEEecc-----cCCchhHHHHHHHHHhCCCceeEEccCC-CCChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHH
Q 027727 3 DEVILLDF-----WASMFGIRVRIALAEKGVKYEYKEQDLF-NKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYI 74 (219)
Q Consensus 3 ~~~~L~~~-----~~s~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL 74 (219)
+++.+|.- +.||||.++.-+|...|++|..+.++-. .....+...+-. .+||-+..+|..|-++..+....
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~-~TVPQIFI~G~~IGG~ddl~~l~ 91 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANW-PTFPQLWVDGELVGGCDIVIEMY 91 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCC-CCCCeEEECCEEEcChHHHHHHH
Confidence 45777755 4899999999999999999998877643 222344455665 68999999999998887777643
No 135
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0019 Score=43.47 Aligned_cols=71 Identities=15% Similarity=0.218 Sum_probs=58.2
Q ss_pred CceEEecccCCchhHHHHHHHHHhCCCceeEEccCCCCChhhH----hhCCCCCeecEEEeCCeeeehhHHHHHHH
Q 027727 3 DEVILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLL----RMNPVHKKIPVLIHNGKSVCESSIIVQYI 74 (219)
Q Consensus 3 ~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~----~~~p~~~~vP~l~~~g~~l~es~~I~~yL 74 (219)
+++.+|.-.+||||.++.-++...|+++..+++|......++. .+.-. .+||.+..+|+.|-....+..+-
T Consensus 14 ~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~-~tvP~vFI~Gk~iGG~~dl~~lh 88 (104)
T KOG1752|consen 14 NPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQ-RTVPNVFIGGKFIGGASDLMALH 88 (104)
T ss_pred CCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCC-CCCCEEEECCEEEcCHHHHHHHH
Confidence 5688999999999999999999999999999998775444443 33444 58999999999998888877654
No 136
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.28 E-value=0.0012 Score=47.31 Aligned_cols=70 Identities=14% Similarity=0.123 Sum_probs=54.2
Q ss_pred ceEEeccc------CCchhHHHHHHHHHhCCCceeEEccCC-CCChhhHhhCC----CCCeecEEEeCCeeeehhHHHHH
Q 027727 4 EVILLDFW------ASMFGIRVRIALAEKGVKYEYKEQDLF-NKSPLLLRMNP----VHKKIPVLIHNGKSVCESSIIVQ 72 (219)
Q Consensus 4 ~~~L~~~~------~s~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p----~~~~vP~l~~~g~~l~es~~I~~ 72 (219)
+++||..+ ++|+|.+++-+|+.+||+|+.+.++.. ...+++.+... . ..+|.+..+|..|.+...+.+
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~-~tvPqVFI~G~~IGG~del~~ 79 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKA-VSLPRVFVDGRYLGGAEEVLR 79 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCC-CCCCEEEECCEEEecHHHHHH
Confidence 37899888 899999999999999999999888764 22334444322 2 479999999999988877776
Q ss_pred HH
Q 027727 73 YI 74 (219)
Q Consensus 73 yL 74 (219)
.-
T Consensus 80 L~ 81 (147)
T cd03031 80 LN 81 (147)
T ss_pred HH
Confidence 43
No 137
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.04 E-value=0.0034 Score=38.45 Aligned_cols=58 Identities=16% Similarity=0.111 Sum_probs=40.5
Q ss_pred ceEEecccCCchhHHHHHHHHHh-----CCCceeEEccCCCCChhhHhhCCCCCeecEEEeCCeeee
Q 027727 4 EVILLDFWASMFGIRVRIALAEK-----GVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSVC 65 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~l~ 65 (219)
++++|+.++||+|.++.-++... ++++..+.++ . .++....... ..+|++..+|..++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~--~-~~~l~~~~~i-~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAA--E-FPDLADEYGV-MSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcc--c-CHhHHHHcCC-cccCEEEECCEEEE
Confidence 47899999999999998888765 4555554443 2 2444444444 47999998887654
No 138
>PTZ00062 glutaredoxin; Provisional
Probab=96.67 E-value=0.008 Score=45.64 Aligned_cols=71 Identities=23% Similarity=0.125 Sum_probs=52.7
Q ss_pred CceEEecc-----cCCchhHHHHHHHHHhCCCceeEEccCCC-CChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHH
Q 027727 3 DEVILLDF-----WASMFGIRVRIALAEKGVKYEYKEQDLFN-KSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYI 74 (219)
Q Consensus 3 ~~~~L~~~-----~~s~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL 74 (219)
.++.||.- +.||||+++.-+|...|++|....++-.. ....+...+.. ..+|.+..+|..|.+...+.+..
T Consensus 113 ~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~-~TvPqVfI~G~~IGG~d~l~~l~ 189 (204)
T PTZ00062 113 HKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNW-PTYPQLYVNGELIGGHDIIKELY 189 (204)
T ss_pred CCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCC-CCCCeEEECCEEEcChHHHHHHH
Confidence 45777744 57999999999999999999988776432 12333345555 58999999999988877776633
No 139
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=96.64 E-value=0.0024 Score=43.69 Aligned_cols=34 Identities=15% Similarity=0.090 Sum_probs=30.9
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEccCC
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQDLF 38 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~ 38 (219)
++||+.+.||+|++++-+|..+|++|+.+.+.-.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~ 34 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEE 34 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCC
Confidence 5899999999999999999999999999987543
No 140
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=96.57 E-value=0.0031 Score=42.56 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=30.5
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEccC
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQDL 37 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~ 37 (219)
+++|+.+.||+|++++-+|..+|++|+.+.+.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLK 33 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeecc
Confidence 579999999999999999999999999998853
No 141
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=96.37 E-value=0.0053 Score=43.27 Aligned_cols=33 Identities=12% Similarity=0.040 Sum_probs=30.8
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEccC
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQDL 37 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~ 37 (219)
+++|+.+.|++|++++-+|..+||+|+.+.+.-
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~ 34 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccC
Confidence 789999999999999999999999999998753
No 142
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=96.24 E-value=0.0088 Score=41.11 Aligned_cols=32 Identities=13% Similarity=0.034 Sum_probs=30.3
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEcc
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQD 36 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 36 (219)
+++|+.+.|++|++++-+|..+|++|+.+.+.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~ 33 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLF 33 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 78999999999999999999999999999874
No 143
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.14 E-value=0.0074 Score=41.61 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=29.8
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEcc
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQD 36 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 36 (219)
+++|+.+.||+|++++-+|..+|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecC
Confidence 47999999999999999999999999988875
No 144
>PRK12559 transcriptional regulator Spx; Provisional
Probab=95.85 E-value=0.018 Score=40.60 Aligned_cols=33 Identities=18% Similarity=0.126 Sum_probs=30.8
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEccC
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQDL 37 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~ 37 (219)
+++|+.+.|+.|++++-+|..+|++|+.+.+.-
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~ 34 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeC
Confidence 789999999999999999999999999998754
No 145
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=95.83 E-value=0.02 Score=40.42 Aligned_cols=33 Identities=6% Similarity=0.071 Sum_probs=30.9
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEccC
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQDL 37 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~ 37 (219)
+++|+.+.|+.|++++-+|...|++|+.+.+.-
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~ 34 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGK 34 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 789999999999999999999999999998753
No 146
>PRK10026 arsenate reductase; Provisional
Probab=95.75 E-value=0.016 Score=41.33 Aligned_cols=35 Identities=9% Similarity=-0.063 Sum_probs=32.0
Q ss_pred CCCceEEecccCCchhHHHHHHHHHhCCCceeEEcc
Q 027727 1 MADEVILLDFWASMFGIRVRIALAEKGVKYEYKEQD 36 (219)
Q Consensus 1 M~~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 36 (219)
|+ ++++|+.+.|.-|++++-.|..+|++|+.+.+-
T Consensus 1 m~-~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~ 35 (141)
T PRK10026 1 MS-NITIYHNPACGTSRNTLEMIRNSGTEPTIIHYL 35 (141)
T ss_pred CC-EEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeee
Confidence 64 599999999999999999999999999998764
No 147
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=95.63 E-value=0.072 Score=34.05 Aligned_cols=55 Identities=24% Similarity=0.281 Sum_probs=40.5
Q ss_pred ceEEecccCCchhHHHHHHHHHhC--CCceeEEccCCCCChhhHhhCCCCCeecEEEeCC
Q 027727 4 EVILLDFWASMFGIRVRIALAEKG--VKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNG 61 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~g--i~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g 61 (219)
+++||+-++|+.|..+.-.|.... .+++...+|... .+++....-. .||||..+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~-d~~l~~~Y~~--~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDE-DPELFEKYGY--RIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTT-THHHHHHSCT--STSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCC-CHHHHHHhcC--CCCEEEEcC
Confidence 489999999999999999999654 456777777763 4555555443 799999766
No 148
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=95.57 E-value=0.026 Score=38.10 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=30.3
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEccC
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQDL 37 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~ 37 (219)
+++|+.+.|+.|++++-.|..+|++|+.+.+.-
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~ 33 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRK 33 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEeccc
Confidence 579999999999999999999999999998753
No 149
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=95.44 E-value=0.023 Score=38.91 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=30.0
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEcc
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQD 36 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 36 (219)
++||+.+.|+.|++++-+|..+|++|+.+.+-
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~ 33 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDLL 33 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeehh
Confidence 78999999999999999999999999998764
No 150
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=95.10 E-value=0.13 Score=32.32 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=40.1
Q ss_pred eEEecccCCchhHHH----HHHHHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEEeCCeeee
Q 027727 5 VILLDFWASMFGIRV----RIALAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSVC 65 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v----~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~l~ 65 (219)
+.+|. ++||.|..+ .-++...|++++.+.++- .++....+- ..+|++..||..++
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~---~~~a~~~~v--~~vPti~i~G~~~~ 61 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD---MNEILEAGV--TATPGVAVDGELVI 61 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC---HHHHHHcCC--CcCCEEEECCEEEE
Confidence 67776 889999988 668888999999888872 233333333 46999998886653
No 151
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=94.86 E-value=0.049 Score=37.53 Aligned_cols=33 Identities=12% Similarity=0.104 Sum_probs=30.6
Q ss_pred ceEEecccCCchhHHHHHHHHHhCCCceeEEcc
Q 027727 4 EVILLDFWASMFGIRVRIALAEKGVKYEYKEQD 36 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 36 (219)
++++|+.+.|.-|++++-.|+..||+|+.+.+.
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~ 34 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYL 34 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEee
Confidence 489999999999999999999999999988764
No 152
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=94.76 E-value=0.051 Score=37.97 Aligned_cols=33 Identities=18% Similarity=0.162 Sum_probs=30.6
Q ss_pred ceEEecccCCchhHHHHHHHHHhCCCceeEEcc
Q 027727 4 EVILLDFWASMFGIRVRIALAEKGVKYEYKEQD 36 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 36 (219)
.++||+.+.|.-|++++-.|..+|++|+++.+-
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~ 34 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDIL 34 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEecc
Confidence 589999999999999999999999999998763
No 153
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=94.64 E-value=0.19 Score=32.98 Aligned_cols=67 Identities=9% Similarity=-0.007 Sum_probs=48.4
Q ss_pred eEEecccCCc------hhHHHHHHHHHhCCCceeEEccCCC-CChhhHhhC----CCCCeecEEEeCCeeeehhHHHHH
Q 027727 5 VILLDFWASM------FGIRVRIALAEKGVKYEYKEQDLFN-KSPLLLRMN----PVHKKIPVLIHNGKSVCESSIIVQ 72 (219)
Q Consensus 5 ~~L~~~~~s~------~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~----p~~~~vP~l~~~g~~l~es~~I~~ 72 (219)
+++|....++ .|++++.+|.-+||+|+.+.++... ...+..... +. ..+|-+..+|..+-+...+..
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~-~tvPQIFi~~~~iGg~ddl~~ 79 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGK-PLPPQIFNGDEYCGDYEAFFE 79 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCC-CCCCEEEECCEEeeCHHHHHH
Confidence 6788777665 3778899999999999999997652 223333332 34 579999999988888755544
No 154
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=94.53 E-value=0.22 Score=31.33 Aligned_cols=57 Identities=14% Similarity=0.200 Sum_probs=38.9
Q ss_pred ceEEecccCCchhHHHHHHHHH----hCCCceeEEccCCCCChhhHhhCCCCCeecEEEeCCe
Q 027727 4 EVILLDFWASMFGIRVRIALAE----KGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGK 62 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~ 62 (219)
.+++|+.++||+|..+.-.++. .+..+....+|... .++....... ..+|++..+|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~-~~~~~~~~~v-~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVME-NPQKAMEYGI-MAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCcc-CHHHHHHcCC-ccCCEEEECCE
Confidence 3789999999999987777653 35446666676553 3344444444 57999987765
No 155
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=94.36 E-value=0.22 Score=32.42 Aligned_cols=58 Identities=12% Similarity=-0.013 Sum_probs=38.4
Q ss_pred ceEEecccCCchhHHHHHHHHHh-----CCCceeEEccCCCCChhhHhhCCCCCeecEEEeCCeeee
Q 027727 4 EVILLDFWASMFGIRVRIALAEK-----GVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSVC 65 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~l~ 65 (219)
.+.+|..++||+|..+.-++... ++.+..+.++ . .++....... ..+|+++.||..+.
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~--~-~~e~a~~~~V-~~vPt~vidG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGA--L-FQDEVEERGI-MSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhH--h-CHHHHHHcCC-ccCCEEEECCEEEE
Confidence 37889999999999887776554 4555555443 2 2444444443 47999998776544
No 156
>PRK10853 putative reductase; Provisional
Probab=94.31 E-value=0.075 Score=36.69 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=29.9
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEcc
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQD 36 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 36 (219)
+++|+.+.|.-|++++-.|+.+|++|+.+.+-
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~ 33 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYR 33 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehc
Confidence 78999999999999999999999999988763
No 157
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=94.11 E-value=0.12 Score=29.92 Aligned_cols=54 Identities=28% Similarity=0.241 Sum_probs=35.5
Q ss_pred eEEecccCCchhHHHHHHHH-----HhCCCceeEEccCCCCChhhHhhCCCCCeecEEEe
Q 027727 5 VILLDFWASMFGIRVRIALA-----EKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIH 59 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~-----~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~ 59 (219)
+.+|+...|++|++.+..+. ..++.+..+.++............+. ..+|+++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~~~~ 59 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGV-GGVPTLVV 59 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCC-ccccEEEE
Confidence 35778888999999999998 44555555554443322222245676 78999983
No 158
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=93.51 E-value=0.11 Score=35.47 Aligned_cols=32 Identities=16% Similarity=0.010 Sum_probs=29.4
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEcc
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQD 36 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 36 (219)
+++|+.+.|.-|++++-.|+..|++|+.+.+-
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYL 32 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 57999999999999999999999999988763
No 159
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=93.34 E-value=0.12 Score=35.42 Aligned_cols=32 Identities=16% Similarity=0.011 Sum_probs=29.4
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEcc
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQD 36 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 36 (219)
+++|+.+.|.-|++++-.|...|++|+.+.+-
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYL 32 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 57999999999999999999999999988764
No 160
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.99 E-value=0.68 Score=30.67 Aligned_cols=69 Identities=22% Similarity=0.328 Sum_probs=48.7
Q ss_pred CceEEe-----cccCCchhHHHHHHHHHhC-CCceeEEccCCCCChhhHh----hCCCCCeecEEEeCCeeeehhHHHHH
Q 027727 3 DEVILL-----DFWASMFGIRVRIALAEKG-VKYEYKEQDLFNKSPLLLR----MNPVHKKIPVLIHNGKSVCESSIIVQ 72 (219)
Q Consensus 3 ~~~~L~-----~~~~s~~~~~v~~~l~~~g-i~~~~~~v~~~~~~~~~~~----~~p~~~~vP~l~~~g~~l~es~~I~~ 72 (219)
+++.|| .+|.|+||.++--+|...| ++|..+.|=- .++.++ .+-. .++|-|-.+|..+-+|..|.+
T Consensus 15 n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~---d~eiR~~lk~~s~W-PT~PQLyi~GEfvGG~DIv~E 90 (105)
T COG0278 15 NPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQ---DPEIRQGLKEYSNW-PTFPQLYVNGEFVGGCDIVRE 90 (105)
T ss_pred CceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeecc---CHHHHhccHhhcCC-CCCceeeECCEEeccHHHHHH
Confidence 345666 4667999999999999999 5676666522 234432 2333 568888889999999888777
Q ss_pred HHH
Q 027727 73 YID 75 (219)
Q Consensus 73 yL~ 75 (219)
...
T Consensus 91 m~q 93 (105)
T COG0278 91 MYQ 93 (105)
T ss_pred HHH
Confidence 553
No 161
>PHA02125 thioredoxin-like protein
Probab=92.52 E-value=0.56 Score=29.27 Aligned_cols=53 Identities=23% Similarity=0.257 Sum_probs=37.3
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEEeCCe
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGK 62 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~ 62 (219)
+.+|+.++|+.|+.+.-.+. ++.++...+|... .++.....-. ..+|++. +|.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~--~~~~~~~~vd~~~-~~~l~~~~~v-~~~PT~~-~g~ 54 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLA--NVEYTYVDVDTDE-GVELTAKHHI-RSLPTLV-NTS 54 (75)
T ss_pred EEEEECCCCHhHHHHHHHHH--HHhheEEeeeCCC-CHHHHHHcCC-ceeCeEE-CCE
Confidence 67899999999998877765 4567766676543 3455555554 5799998 443
No 162
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=91.97 E-value=0.5 Score=31.50 Aligned_cols=67 Identities=12% Similarity=0.033 Sum_probs=39.5
Q ss_pred eEEecccCCch------hHHHHHHHHHhCCCceeEEccCCC-CChhhHh-h--------CCCCCeecEEEeCCeeeehhH
Q 027727 5 VILLDFWASMF------GIRVRIALAEKGVKYEYKEQDLFN-KSPLLLR-M--------NPVHKKIPVLIHNGKSVCESS 68 (219)
Q Consensus 5 ~~L~~~~~s~~------~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~-~--------~p~~~~vP~l~~~g~~l~es~ 68 (219)
+++|.+..++. .+++..+|..++|+|+.+.+.... ...+.+. . ++. ...|-+..||..+.+--
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~-~lpPqiF~~~~Y~Gdye 81 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGK-PLPPQIFNGDEYCGDYE 81 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT---S-EEEETTEEEEEHH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCC-CCCCEEEeCCEEEeeHH
Confidence 88998877664 568999999999999988887652 2233332 2 333 34578888887766644
Q ss_pred HHHH
Q 027727 69 IIVQ 72 (219)
Q Consensus 69 ~I~~ 72 (219)
.+-+
T Consensus 82 ~f~e 85 (99)
T PF04908_consen 82 DFEE 85 (99)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 163
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=91.35 E-value=0.8 Score=31.01 Aligned_cols=68 Identities=15% Similarity=0.245 Sum_probs=43.7
Q ss_pred CCchhHHHHHHHHH---hCCCceeEEccCCCCChhhH-hhCCCCCeecEEE-eCCe-------------eeehhHHHHHH
Q 027727 12 ASMFGIRVRIALAE---KGVKYEYKEQDLFNKSPLLL-RMNPVHKKIPVLI-HNGK-------------SVCESSIIVQY 73 (219)
Q Consensus 12 ~s~~~~~v~~~l~~---~gi~~~~~~v~~~~~~~~~~-~~~p~~~~vP~l~-~~g~-------------~l~es~~I~~y 73 (219)
.||.|..+.=+|.. ..-..+.+.|+......... .+...+..+|+|+ .+|. .|.++..|++|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~ 102 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRY 102 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHH
Confidence 47888887776654 22235556666554333333 2222124589998 3443 79999999999
Q ss_pred HHhhcC
Q 027727 74 IDEVWK 79 (219)
Q Consensus 74 L~~~~~ 79 (219)
|+++++
T Consensus 103 La~r~g 108 (112)
T PF11287_consen 103 LAERHG 108 (112)
T ss_pred HHHHcC
Confidence 999988
No 164
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=90.85 E-value=1 Score=28.13 Aligned_cols=57 Identities=19% Similarity=0.204 Sum_probs=36.3
Q ss_pred ceEEecccCCchhHHHHH----HHHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEEeCCeeeeh
Q 027727 4 EVILLDFWASMFGIRVRI----ALAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSVCE 66 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~----~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~l~e 66 (219)
+++++ .+.||+|..+.- ++...|+.++.+.+ ...++. ..... ..+|+++-||.+++.
T Consensus 2 ~I~v~-~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~---~~~~~~-~~ygv-~~vPalvIng~~~~~ 62 (76)
T PF13192_consen 2 KIKVF-SPGCPYCPELVQLLKEAAEELGIEVEIIDI---EDFEEI-EKYGV-MSVPALVINGKVVFV 62 (76)
T ss_dssp EEEEE-CSSCTTHHHHHHHHHHHHHHTTEEEEEEET---TTHHHH-HHTT--SSSSEEEETTEEEEE
T ss_pred EEEEe-CCCCCCcHHHHHHHHHHHHhcCCeEEEEEc---cCHHHH-HHcCC-CCCCEEEECCEEEEE
Confidence 36774 556999996555 45567777766655 223444 44444 579999988876544
No 165
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=85.61 E-value=1.1 Score=32.97 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=32.4
Q ss_pred HHHHHHHHHcccCCC---CcccCCC-cchhhhhhhhhhhhhh
Q 027727 128 FIEVLKTLGGELGDK---PFFGGDN-FGYVDLCLIPYYCWFY 165 (219)
Q Consensus 128 l~~~l~~le~~L~~~---~~l~G~~-~t~aD~~l~~~l~~~~ 165 (219)
-.+++..|++.|++. +|+.|+. +|-+||.+++.|.-+.
T Consensus 113 a~~~l~~L~~~L~~~~~~~~~f~~~~psslD~L~~ayL~l~l 154 (168)
T PF11801_consen 113 AMECLSLLEELLGEWEEARYFFGDSKPSSLDCLAFAYLALLL 154 (168)
T ss_pred HHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHh
Confidence 467888999999877 9999977 9999999999986644
No 166
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=83.64 E-value=1.3 Score=30.04 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=22.6
Q ss_pred ecccCCchhHHHHHHHHHhCCCceeEEcc
Q 027727 8 LDFWASMFGIRVRIALAEKGVKYEYKEQD 36 (219)
Q Consensus 8 ~~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 36 (219)
|+.+.|.-|++++-.|+..|++|+.+.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~ 29 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYK 29 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhh
Confidence 78889999999999999999999988663
No 167
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=80.20 E-value=8.3 Score=26.61 Aligned_cols=58 Identities=9% Similarity=0.101 Sum_probs=33.4
Q ss_pred eEEecccCCchhHHHHHH----HHHhCCCceeEEccCCC----C-C---hhhHhhC----CCCCeecEEE--eCCee
Q 027727 5 VILLDFWASMFGIRVRIA----LAEKGVKYEYKEQDLFN----K-S---PLLLRMN----PVHKKIPVLI--HNGKS 63 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~----l~~~gi~~~~~~v~~~~----~-~---~~~~~~~----p~~~~vP~l~--~~g~~ 63 (219)
+..|+.++||+|+...=. .+..++++..+.++... . . .++.... .. ..+|+++ .+|+.
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i-~~~PT~v~~k~Gk~ 102 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSF-MGTPTFVHITDGKQ 102 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccC-CCCCEEEEEeCCeE
Confidence 456788899999974433 44455666666665321 0 1 1333322 22 3499998 47754
No 168
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=79.72 E-value=1.6 Score=33.58 Aligned_cols=59 Identities=15% Similarity=0.142 Sum_probs=45.7
Q ss_pred HHHHHHHHcccCCCCcccCCCcchhhhhhhhhhhhhhhhhhhcCccccccCchHHHHHHHHhcccchh
Q 027727 129 IEVLKTLGGELGDKPFFGGDNFGYVDLCLIPYYCWFYSYETFGKFSVEAECPKFIAWVTRCLQRETVA 196 (219)
Q Consensus 129 ~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~ 196 (219)
...+..++..|.+.+|.-|.+++-+|+.++..+.- .+....+++..+|++.+.+...+.
T Consensus 10 ~~glk~l~~sLA~ks~~~g~~~s~edv~vf~al~~---------ep~s~~~v~~~~w~~~l~a~~~~~ 68 (231)
T KOG1668|consen 10 PAGLKKLNKSLAEKSYIEGYQLSKEDVVVFAALGV---------EPQSARLVNAERWYSKLEALLRLL 68 (231)
T ss_pred hhhhhhhhHhhhcccCCCCCCcccccceeehhccc---------CcchhhhhHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999988632 122366777888888877654443
No 169
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=79.37 E-value=6 Score=34.98 Aligned_cols=57 Identities=14% Similarity=0.165 Sum_probs=38.3
Q ss_pred ceEEecccCCchhHHHHH----HHHHh-CCCceeEEccCCCCChhhHhhCCCCCeecEEEeCCeee
Q 027727 4 EVILLDFWASMFGIRVRI----ALAEK-GVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSV 64 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~----~l~~~-gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~l 64 (219)
.+++|..++||||-.+.- ++.+. +|..+.+.+... ++....... ..||.++.||.++
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~---~~~~~~~~v-~~vP~~~i~~~~~ 540 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHF---PDLKDEYGI-MSVPAIVVDDQQV 540 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECccc---HHHHHhCCc-eecCEEEECCEEE
Confidence 378888999999987554 34444 677777666442 455544444 5799999877654
No 170
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=78.41 E-value=2.9 Score=36.61 Aligned_cols=71 Identities=14% Similarity=-0.004 Sum_probs=43.4
Q ss_pred ceEEecccCCchhHHHHHHHHHhCCC---ceeEEccCCCCChhhHhhCCCCCeecEEEeCCeeeehh----HHHHHHHHh
Q 027727 4 EVILLDFWASMFGIRVRIALAEKGVK---YEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSVCES----SIIVQYIDE 76 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~l~es----~~I~~yL~~ 76 (219)
.+++|..+.||||-.+.-++...-+. ++...+|.. ..+++....-. ..||.+..||..+.+- ..+++.+.+
T Consensus 119 ~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~-~~~~~~~~~~v-~~VP~~~i~~~~~~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 119 HFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGA-LFQDEVEARNI-MAVPTVFLNGEEFGQGRMTLEEILAKLDT 196 (517)
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEch-hCHhHHHhcCC-cccCEEEECCcEEEecCCCHHHHHHHHhc
Confidence 37899999999999876665544332 333333332 23555555554 5899999777655442 345555544
No 171
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=76.66 E-value=10 Score=29.13 Aligned_cols=70 Identities=16% Similarity=0.093 Sum_probs=49.9
Q ss_pred ceEEe-----cccCCchhHHHHHHHHHhCCCceeEEccCCC-CChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHH
Q 027727 4 EVILL-----DFWASMFGIRVRIALAEKGVKYEYKEQDLFN-KSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYI 74 (219)
Q Consensus 4 ~~~L~-----~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL 74 (219)
+++|| ..|.|++++++.-.|...|++|....|--++ -..-....+-. .+.|=|-.+|..+-++..|.+.+
T Consensus 140 ~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdW-PTfPQlyI~GEFiGGlDIl~~m~ 215 (227)
T KOG0911|consen 140 PVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDW-PTFPQLYVKGEFIGGLDILKEMH 215 (227)
T ss_pred eEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCC-CCccceeECCEeccCcHHHHHHh
Confidence 45565 3566999999999999999999988875431 11112233444 57888889999988877776655
No 172
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=76.46 E-value=3.3 Score=36.20 Aligned_cols=61 Identities=11% Similarity=-0.051 Sum_probs=38.6
Q ss_pred ceEEecccCCchhHHHHHHHHHhCCC---ceeEEccCCCCChhhHhhCCCCCeecEEEeCCeeeeh
Q 027727 4 EVILLDFWASMFGIRVRIALAEKGVK---YEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSVCE 66 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~l~e 66 (219)
.+++|..+.||||-.+.-++...-+. ++...+|-.. -+++....-. ..||.+.-||..+.+
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~-~~~~~~~~~v-~~VP~~~i~~~~~~~ 183 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGAL-FQDEVEALGI-QGVPAVFLNGEEFHN 183 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchh-CHHHHHhcCC-cccCEEEECCcEEEe
Confidence 37899999999999877766554443 2333333322 3455544454 579999977765554
No 173
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=76.36 E-value=18 Score=23.29 Aligned_cols=69 Identities=20% Similarity=0.253 Sum_probs=42.1
Q ss_pred eEEecccCCchhHHHHHHH-----HHhCCCceeEEccCCCCChhhHhhCCCCCeecEEE--eCCeee------ehhHHHH
Q 027727 5 VILLDFWASMFGIRVRIAL-----AEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLI--HNGKSV------CESSIIV 71 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l-----~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~~l------~es~~I~ 71 (219)
+..|+.++|+.|+...=.+ ...+ ++....+|... .+.+....-. ..+|.+. .+|..+ .+...|.
T Consensus 21 vv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~-~~~l~~~~~v-~~~Pt~~~~~~g~~~~~~~g~~~~~~l~ 97 (103)
T PF00085_consen 21 VVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDE-NKELCKKYGV-KSVPTIIFFKNGKEVKRYNGPRNAESLI 97 (103)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT-SHHHHHHTTC-SSSSEEEEEETTEEEEEEESSSSHHHHH
T ss_pred EEEEeCCCCCccccccceeccccccccc-ccccchhhhhc-cchhhhccCC-CCCCEEEEEECCcEEEEEECCCCHHHHH
Confidence 5667788899999766333 3343 67777777653 3455544444 5799997 576543 2334566
Q ss_pred HHHHh
Q 027727 72 QYIDE 76 (219)
Q Consensus 72 ~yL~~ 76 (219)
++|.+
T Consensus 98 ~~i~~ 102 (103)
T PF00085_consen 98 EFIEK 102 (103)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 66543
No 174
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=73.68 E-value=19 Score=23.26 Aligned_cols=58 Identities=10% Similarity=0.036 Sum_probs=34.3
Q ss_pred eEEecccCCchhHHHHHHHHH----hCCCceeEEccCCCCChhhHhhCCCCCeecEEE--eCCeee
Q 027727 5 VILLDFWASMFGIRVRIALAE----KGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLI--HNGKSV 64 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~~l 64 (219)
+..|+.++|+.|+...-.+.. .+-.+....+|... .+++....-. ..+|++. .+|.++
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~-~~~l~~~~~v-~~vPt~~i~~~g~~v 80 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDE-DQEIAEAAGI-MGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCC-CHHHHHHCCC-eeccEEEEEECCeEE
Confidence 456777889999977655543 22134555555543 3455433333 4799887 567654
No 175
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=72.15 E-value=20 Score=22.06 Aligned_cols=55 Identities=25% Similarity=0.221 Sum_probs=33.4
Q ss_pred eEEecccCCchhHHHHHHHHH-----hCCCceeEEccCCCCChhhHhhCCCCCeecEEE--eCCee
Q 027727 5 VILLDFWASMFGIRVRIALAE-----KGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLI--HNGKS 63 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~~ 63 (219)
+..|+.++|++|+...-.+.. .++.+-.+.++ . ...+...... ..+|++. .+|..
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~--~-~~~~~~~~~v-~~~P~~~~~~~g~~ 75 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVD--E-NPELAEEYGV-RSIPTFLFFKNGKE 75 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECC--C-ChhHHHhcCc-ccccEEEEEECCEE
Confidence 566778889999987776665 45444444333 2 3344433344 4699887 46653
No 176
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=71.64 E-value=17 Score=24.60 Aligned_cols=52 Identities=12% Similarity=0.086 Sum_probs=31.9
Q ss_pred eEEe-cccCCchhHHHHHHHHHhCCC---ceeEEccCCCCChhhHhhCCCCCeecEEE
Q 027727 5 VILL-DFWASMFGIRVRIALAEKGVK---YEYKEQDLFNKSPLLLRMNPVHKKIPVLI 58 (219)
Q Consensus 5 ~~L~-~~~~s~~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~~vP~l~ 58 (219)
+.++ +.++||+|+.++-+++...-. ++...++.. ..++....... ..+|++.
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d-~~~~l~~~~~v-~~vPt~~ 80 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFD-EDKEKAEKYGV-ERVPTTI 80 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCC-cCHHHHHHcCC-CcCCEEE
Confidence 3444 567899999877666543322 234444443 34566655555 6899997
No 177
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=67.06 E-value=3.6 Score=28.38 Aligned_cols=27 Identities=26% Similarity=0.480 Sum_probs=13.3
Q ss_pred eecEEEe--CCeeeehhHHHHHHHHhhcC
Q 027727 53 KIPVLIH--NGKSVCESSIIVQYIDEVWK 79 (219)
Q Consensus 53 ~vP~l~~--~g~~l~es~~I~~yL~~~~~ 79 (219)
.-|-|.+ +|..++|+.||++|+..-|.
T Consensus 35 ~~~~L~~~~~gF~L~e~NAIvrYl~nDF~ 63 (122)
T PF09635_consen 35 SGPLLKDKKSGFELFEPNAIVRYLANDFE 63 (122)
T ss_dssp -S--EEE-S--S----HHHHHHHHTT--T
T ss_pred ccceeeecCCceEEecccHHHHHHHhhcC
Confidence 4588853 68899999999999977665
No 178
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=66.66 E-value=17 Score=23.81 Aligned_cols=52 Identities=13% Similarity=-0.059 Sum_probs=30.3
Q ss_pred eEEecccCCchhHHHHHHH--------HHhCCCceeEEccCCCC---ChhhHhhCCCCCeecEEE
Q 027727 5 VILLDFWASMFGIRVRIAL--------AEKGVKYEYKEQDLFNK---SPLLLRMNPVHKKIPVLI 58 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l--------~~~gi~~~~~~v~~~~~---~~~~~~~~p~~~~vP~l~ 58 (219)
+..|+.++|++|++..-.+ ...+ .+....++.... .+++...... ..+|++.
T Consensus 15 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i-~~~Pti~ 77 (104)
T cd02953 15 FVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGV-FGPPTYL 77 (104)
T ss_pred EEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCC-CCCCEEE
Confidence 4567888899999765322 2232 456556665422 2344444444 5699886
No 179
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.71 E-value=25 Score=24.28 Aligned_cols=66 Identities=12% Similarity=0.031 Sum_probs=42.0
Q ss_pred ccCCchhHHH----HHHHHHhCCCceeEEccCCCCChhhHhhCCCCC-------eecEEEe-C--CeeeehhHHHHHHHH
Q 027727 10 FWASMFGIRV----RIALAEKGVKYEYKEQDLFNKSPLLLRMNPVHK-------KIPVLIH-N--GKSVCESSIIVQYID 75 (219)
Q Consensus 10 ~~~s~~~~~v----~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~-------~vP~l~~-~--g~~l~es~~I~~yL~ 75 (219)
-++||.|.++ +=++++.+.+..++.+...+++-|-...||+ . -||+|.. + +..+.+...-...|.
T Consensus 42 qSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~F-R~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~Lv 120 (128)
T KOG3425|consen 42 QSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPF-RKDPGILTAVPTLLRWKRQPQRLDGLQCLNDHLV 120 (128)
T ss_pred CcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCcc-ccCCCceeecceeeEEcCccccchHhHhhHHHHH
Confidence 3469998864 4557777888888888766554444444554 3 3788872 3 345666666666664
Q ss_pred h
Q 027727 76 E 76 (219)
Q Consensus 76 ~ 76 (219)
+
T Consensus 121 e 121 (128)
T KOG3425|consen 121 E 121 (128)
T ss_pred H
Confidence 4
No 180
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=64.25 E-value=40 Score=22.70 Aligned_cols=60 Identities=18% Similarity=0.167 Sum_probs=36.4
Q ss_pred eEEecccCCchhHHHHHHHHHhCC---CceeEEccCCCCChhhHhhCCCCCeecEEE--eCCeeeeh
Q 027727 5 VILLDFWASMFGIRVRIALAEKGV---KYEYKEQDLFNKSPLLLRMNPVHKKIPVLI--HNGKSVCE 66 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~~l~e 66 (219)
+..|+.++|+.|+...-.+...-- .+....+|... .++..+.... ..+|++. .+|..+..
T Consensus 26 vV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~-~~~l~~~~~v-~~vPt~l~fk~G~~v~~ 90 (113)
T cd02989 26 VCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEK-APFLVEKLNI-KVLPTVILFKNGKTVDR 90 (113)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEccc-CHHHHHHCCC-ccCCEEEEEECCEEEEE
Confidence 456677889999976655533111 23555566443 3455554554 6899997 58876653
No 181
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=63.37 E-value=27 Score=23.75 Aligned_cols=16 Identities=6% Similarity=0.173 Sum_probs=12.4
Q ss_pred eEEecccCCchhHHHH
Q 027727 5 VILLDFWASMFGIRVR 20 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~ 20 (219)
+..|+.++|++|++..
T Consensus 18 lv~f~a~wC~~C~~~~ 33 (125)
T cd02951 18 LLLFSQPGCPYCDKLK 33 (125)
T ss_pred EEEEeCCCCHHHHHHH
Confidence 4567788899999765
No 182
>PRK09381 trxA thioredoxin; Provisional
Probab=61.08 E-value=44 Score=21.93 Aligned_cols=58 Identities=16% Similarity=0.046 Sum_probs=32.3
Q ss_pred eEEecccCCchhHHHHHHHH----HhCCCceeEEccCCCCChhhHhhCCCCCeecEEE--eCCeee
Q 027727 5 VILLDFWASMFGIRVRIALA----EKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLI--HNGKSV 64 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~----~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~~l 64 (219)
+..|+.++||.|+...-.++ ..+-.+....++.... +........ ..+|+++ .+|..+
T Consensus 25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~-~~~~~~~~v-~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN-PGTAPKYGI-RGIPTLLLFKNGEVA 88 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCC-hhHHHhCCC-CcCCEEEEEeCCeEE
Confidence 34567778998886643332 2222355566665543 333333333 5799886 577654
No 183
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=60.06 E-value=42 Score=21.34 Aligned_cols=57 Identities=12% Similarity=0.078 Sum_probs=34.5
Q ss_pred eEEecccCCchhHHHHHHHHH---h-CCCceeEEccCCCCChhhH-hhCCCCCeecEEE--eCCeee
Q 027727 5 VILLDFWASMFGIRVRIALAE---K-GVKYEYKEQDLFNKSPLLL-RMNPVHKKIPVLI--HNGKSV 64 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~---~-gi~~~~~~v~~~~~~~~~~-~~~p~~~~vP~l~--~~g~~l 64 (219)
+..|+.++|+.|++..-.+.. . ...+....+|.... +++. ..+. ..+|++. .+|..+
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~-~~~~~~~~i--~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEEL-PEISEKFEI--TAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccC-HHHHHhcCC--ccccEEEEEECCEEE
Confidence 456677889999877655543 1 34566666665433 3343 4444 4699887 566543
No 184
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=58.52 E-value=15 Score=27.00 Aligned_cols=35 Identities=17% Similarity=0.105 Sum_probs=26.4
Q ss_pred ceEEecccCCchhHH----HHHHHHHh-CCCceeEEccCC
Q 027727 4 EVILLDFWASMFGIR----VRIALAEK-GVKYEYKEQDLF 38 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~----v~~~l~~~-gi~~~~~~v~~~ 38 (219)
++++|+...||||.. ++-+++.. |+.++..++.+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 478899999999984 44455555 888888888764
No 185
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=57.57 E-value=45 Score=22.27 Aligned_cols=68 Identities=9% Similarity=0.034 Sum_probs=40.2
Q ss_pred EecccCCchhHHHHHHHHHhCCCceeEEccCC-CCChh---hHh---hCCCCCeecEEEeCCe-eeehhHHHHHHHHh
Q 027727 7 LLDFWASMFGIRVRIALAEKGVKYEYKEQDLF-NKSPL---LLR---MNPVHKKIPVLIHNGK-SVCESSIIVQYIDE 76 (219)
Q Consensus 7 L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~---~~~---~~p~~~~vP~l~~~g~-~l~es~~I~~yL~~ 76 (219)
|++...||+|....-.+...+..-....++.. ....+ ... .+.. ..+-+ ..+|. +..++.|+.+-+..
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~-~~~g~~~~~G~~A~~~l~~~ 76 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDAD-SRLHL-IDDGERVYRGSDAVLRLLRR 76 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHc-CeeEE-ecCCCEEEEcHHHHHHHHHH
Confidence 45667899999988888777764334444431 11111 112 2233 33444 55665 99999999887644
No 186
>PHA03075 glutaredoxin-like protein; Provisional
Probab=55.46 E-value=22 Score=24.34 Aligned_cols=68 Identities=15% Similarity=0.176 Sum_probs=47.7
Q ss_pred CCCceEEecccCCchhHHHHHHHHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEEeC-CeeeehhHHHHHHHHhh
Q 027727 1 MADEVILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHN-GKSVCESSIIVQYIDEV 77 (219)
Q Consensus 1 M~~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~-g~~l~es~~I~~yL~~~ 77 (219)
|-..+.|++-|.|+-|.-+.-+|....=+|+...|+... +. +-. |++=+|..+ +..+- ..+.+|+...
T Consensus 1 mK~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlS----fF--sK~-g~v~~lg~d~~y~lI--nn~~~~lgne 69 (123)
T PHA03075 1 MKKTLILFGKPLCSVCESISEALKELEDEYDILRVNILS----FF--SKD-GQVKVLGMDKGYTLI--NNFFKHLGNE 69 (123)
T ss_pred CCceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEeee----ee--ccC-CceEEEecccceehH--HHHHHhhccc
Confidence 667799999999999999999999888899999887531 11 112 677777643 33222 3466666543
No 187
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=54.84 E-value=61 Score=21.59 Aligned_cols=57 Identities=12% Similarity=0.064 Sum_probs=31.4
Q ss_pred eEEecccCCchhHHHHHH-----HHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEE--eCCee
Q 027727 5 VILLDFWASMFGIRVRIA-----LAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLI--HNGKS 63 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~-----l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~~ 63 (219)
+..|+.++|+.|+...-. -.+.|..+....++... .+.......- ..+|++. .+|..
T Consensus 28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~-~~~l~~~~~V-~~~Pt~~i~~~g~~ 91 (111)
T cd02963 28 LIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH-ERRLARKLGA-HSVPAIVGIINGQV 91 (111)
T ss_pred EEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc-cHHHHHHcCC-ccCCEEEEEECCEE
Confidence 455677888888754322 23333345555555443 2344433343 5799887 56654
No 188
>PTZ00051 thioredoxin; Provisional
Probab=51.51 E-value=61 Score=20.62 Aligned_cols=57 Identities=12% Similarity=0.053 Sum_probs=32.1
Q ss_pred eEEecccCCchhHHHHHHHHH---hCCCceeEEccCCCCChhhHhhCCCCCeecEEE--eCCee
Q 027727 5 VILLDFWASMFGIRVRIALAE---KGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLI--HNGKS 63 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~---~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~~ 63 (219)
+..|+.++|+.|+...-.+.. ....+....++... ...+...... ..+|++. .+|..
T Consensus 22 li~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~-~~~~~~~~~v-~~~Pt~~~~~~g~~ 83 (98)
T PTZ00051 22 IVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDE-LSEVAEKENI-TSMPTFKVFKNGSV 83 (98)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcc-hHHHHHHCCC-ceeeEEEEEeCCeE
Confidence 456778889999876544433 21234445555432 3444444444 5799887 46654
No 189
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=50.40 E-value=46 Score=25.33 Aligned_cols=53 Identities=9% Similarity=0.002 Sum_probs=33.0
Q ss_pred eEEecccCCchhHHHHHHHHHhCC---CceeEEccCCCCChhhHhhCCCCCeecEEEe
Q 027727 5 VILLDFWASMFGIRVRIALAEKGV---KYEYKEQDLFNKSPLLLRMNPVHKKIPVLIH 59 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~ 59 (219)
+.+|+.++||+|..+.-++...-- .+....+|... .++....... ..+|++.-
T Consensus 137 I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~-~~~~~~~~~V-~~vPtl~i 192 (215)
T TIGR02187 137 IEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANE-NPDLAEKYGV-MSVPKIVI 192 (215)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCC-CHHHHHHhCC-ccCCEEEE
Confidence 567889999999988776664321 23344455443 3445444443 46999983
No 190
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=49.49 E-value=93 Score=24.55 Aligned_cols=67 Identities=19% Similarity=0.155 Sum_probs=40.6
Q ss_pred hhHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhhhcccchhhhhccChHHHHHHHHHHHHHHHHHHccc
Q 027727 66 ESSIIVQYIDEVWKDKAPLLPYDPYQRAQARFWVDFIDKKMYDTSRKTWATKGEEQEAAKKEFIEVLKTLGGEL 139 (219)
Q Consensus 66 es~~I~~yL~~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L 139 (219)
|...|-..+.+....+ .-|+++...+.|..-+...-...+.+.... -+.+.+++++..-++.||.+|
T Consensus 5 E~qLI~~lf~RL~~ae--~~prD~eAe~lI~~~~~~qP~A~Y~laQ~v-----lvQE~AL~~a~~ri~eLe~ql 71 (247)
T PF09849_consen 5 ERQLIDDLFSRLKQAE--AQPRDPEAEALIAQALARQPDAPYYLAQTV-----LVQEQALKQAQARIQELEAQL 71 (247)
T ss_pred HHHHHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHhCCchHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666655422 238888888877766655554443332222 245677777777788888886
No 191
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=47.63 E-value=19 Score=24.34 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=21.5
Q ss_pred ecEEE-eCCeeeehhHHHHHHHHhhcC
Q 027727 54 IPVLI-HNGKSVCESSIIVQYIDEVWK 79 (219)
Q Consensus 54 vP~l~-~~g~~l~es~~I~~yL~~~~~ 79 (219)
+|.+. .+|.++++|..|+++....+.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 35555 799999999999999977765
No 192
>PHA02278 thioredoxin-like protein
Probab=46.78 E-value=84 Score=20.83 Aligned_cols=59 Identities=14% Similarity=0.139 Sum_probs=30.4
Q ss_pred eEEecccCCchhHHHHHHHHHh----CCCceeEEccCCCC---ChhhHhhCCCCCeecEEE--eCCeee
Q 027727 5 VILLDFWASMFGIRVRIALAEK----GVKYEYKEQDLFNK---SPLLLRMNPVHKKIPVLI--HNGKSV 64 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~----gi~~~~~~v~~~~~---~~~~~~~~p~~~~vP~l~--~~g~~l 64 (219)
+.-|+.++|+.|+...=.+... +.......++.... .++.....-. ..+|++. .+|..+
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I-~~iPT~i~fk~G~~v 85 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDI-MSTPVLIGYKDGQLV 85 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCC-ccccEEEEEECCEEE
Confidence 3445677788888554333221 22233444444321 2444433333 4799998 577654
No 193
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=46.16 E-value=83 Score=21.33 Aligned_cols=60 Identities=13% Similarity=0.072 Sum_probs=31.1
Q ss_pred eEEecccCCchhHHHHHHHHH------hCCCceeEEccCCCCChhhHhhCCCCCeecEEE--e-CCeeee
Q 027727 5 VILLDFWASMFGIRVRIALAE------KGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLI--H-NGKSVC 65 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~------~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~-~g~~l~ 65 (219)
+.-|+.++|+.|+...-.+.. .+..|..+.++-.. .+.-...+..++.+|++. + +|.++.
T Consensus 23 lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~-~~~~~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 23 MLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDE-EPKDEEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred EEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCC-CchhhhcccCCCccceEEEECCCCCCch
Confidence 345667789999876444333 22344444444322 111123344412499987 3 666644
No 194
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=45.66 E-value=36 Score=24.23 Aligned_cols=76 Identities=14% Similarity=0.025 Sum_probs=47.4
Q ss_pred CceEEecccCCchhHHHHHHHHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEEeCCeeeeh---hHHHHHHHHhhc
Q 027727 3 DEVILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSVCE---SSIIVQYIDEVW 78 (219)
Q Consensus 3 ~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~l~e---s~~I~~yL~~~~ 78 (219)
-++..|.+|.|+.|..-.=.|+.+|..++.+..+....-..-..+.+.....=+.+.+|..+=. -.+|.+.|++..
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll~~~p 104 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLLAEKP 104 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcHHHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHHhCCC
Confidence 3588999999999999888999999888887765331000001111100123344456765433 367889988766
No 195
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=44.70 E-value=1.1e+02 Score=22.12 Aligned_cols=60 Identities=18% Similarity=0.172 Sum_probs=32.9
Q ss_pred eEEecccCCchhHHHHHHHH-----HhCCCceeEEccCCCCChhhHhhCCCC-----CeecEEE--eCCeeee
Q 027727 5 VILLDFWASMFGIRVRIALA-----EKGVKYEYKEQDLFNKSPLLLRMNPVH-----KKIPVLI--HNGKSVC 65 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~-----~~gi~~~~~~v~~~~~~~~~~~~~p~~-----~~vP~l~--~~g~~l~ 65 (219)
+..|+.++||.|+...-.++ ..+-.+....+|.... ++..+..-.. .++|++. .+|+.+.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~-~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF-PNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC-HHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 45677788998886543322 2233456666665432 3333222210 2389987 5777654
No 196
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=44.46 E-value=70 Score=20.27 Aligned_cols=57 Identities=12% Similarity=0.042 Sum_probs=32.5
Q ss_pred eEEecccCCchhHHHHHHHHH----hCCCceeEEccCCCCChhhHhhCCCCCeecEEE--eCCee
Q 027727 5 VILLDFWASMFGIRVRIALAE----KGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLI--HNGKS 63 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~~ 63 (219)
+..|+.++|+.|+...-.+.. .+-.+....+|... .+++...-.. ..+|+++ .+|..
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-~~~l~~~~~i-~~~Pt~~~~~~g~~ 78 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA-QPQIAQQFGV-QALPTVYLFAAGQP 78 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC-CHHHHHHcCC-CCCCEEEEEeCCEE
Confidence 445667778888866444432 12234555565543 3455444343 5699997 56654
No 197
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=42.65 E-value=94 Score=20.21 Aligned_cols=57 Identities=16% Similarity=-0.008 Sum_probs=30.3
Q ss_pred eEEecccCCchhHHHHHHHHH----hC-CCceeEEccCCCCChhhHhhCCCCCeecEEE--eCCeee
Q 027727 5 VILLDFWASMFGIRVRIALAE----KG-VKYEYKEQDLFNKSPLLLRMNPVHKKIPVLI--HNGKSV 64 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~----~g-i~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~~l 64 (219)
+..|+.++|+.|+...-.+.. .+ -.+.+..++.. .++.....-- ..+|++. .+|..+
T Consensus 21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d--~~~~~~~~~v-~~~Pt~~~~~~g~~~ 84 (102)
T cd02948 21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD--TIDTLKRYRG-KCEPTFLFYKNGELV 84 (102)
T ss_pred EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC--CHHHHHHcCC-CcCcEEEEEECCEEE
Confidence 456677889988865433322 22 12344444444 2334433333 4689876 467543
No 198
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=42.25 E-value=36 Score=25.72 Aligned_cols=34 Identities=15% Similarity=-0.039 Sum_probs=24.6
Q ss_pred ceEEecccCCchhHH----HHHHHHHhCCCceeEEccC
Q 027727 4 EVILLDFWASMFGIR----VRIALAEKGVKYEYKEQDL 37 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~----v~~~l~~~gi~~~~~~v~~ 37 (219)
++.+|+...||||.- ++-++...+++++.+++.+
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L 39 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFL 39 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 578999999999884 3444556677777777654
No 199
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=42.18 E-value=89 Score=20.78 Aligned_cols=59 Identities=15% Similarity=0.133 Sum_probs=32.4
Q ss_pred eEEecccCCchhHHHHHHHHHhCC---CceeEEccCCCCChhhHhhCCCCCeecEEE--eCCeeeeh
Q 027727 5 VILLDFWASMFGIRVRIALAEKGV---KYEYKEQDLFNKSPLLLRMNPVHKKIPVLI--HNGKSVCE 66 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~~l~e 66 (219)
+..|+.++|+.|+...-.++..-- ......+|.... ++....-. ..+|++. .+|..+..
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~--~l~~~~~i-~~~Pt~~~f~~G~~v~~ 91 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA--FLVNYLDI-KVLPTLLVYKNGELIDN 91 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh--HHHHhcCC-CcCCEEEEEECCEEEEE
Confidence 345677889888865544432111 234445554432 44433333 4799997 57776544
No 200
>PRK10996 thioredoxin 2; Provisional
Probab=41.33 E-value=1.2e+02 Score=21.16 Aligned_cols=58 Identities=19% Similarity=0.083 Sum_probs=33.6
Q ss_pred eEEecccCCchhHHHHHHH----HHhCCCceeEEccCCCCChhhHhhCCCCCeecEEE--eCCeee
Q 027727 5 VILLDFWASMFGIRVRIAL----AEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLI--HNGKSV 64 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l----~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~~l 64 (219)
+..|+.++|+.|+...-.+ ...+-.+....+|... .+++....-. ..+|++. .+|..+
T Consensus 56 vv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~-~~~l~~~~~V-~~~Ptlii~~~G~~v 119 (139)
T PRK10996 56 VIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEA-ERELSARFRI-RSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCC-CHHHHHhcCC-CccCEEEEEECCEEE
Confidence 4566778899888653333 2233345566666544 3444433333 4799987 577654
No 201
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=38.63 E-value=38 Score=25.30 Aligned_cols=22 Identities=9% Similarity=-0.011 Sum_probs=17.8
Q ss_pred ceEEecccCCchhHHHHHHHHH
Q 027727 4 EVILLDFWASMFGIRVRIALAE 25 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~ 25 (219)
.+.+|..+.||||++..-.+..
T Consensus 80 ~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 80 VVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred EEEEEECCCCccHHHHHHHHhh
Confidence 3677888899999998877764
No 202
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=38.61 E-value=1.1e+02 Score=20.05 Aligned_cols=53 Identities=9% Similarity=0.061 Sum_probs=29.9
Q ss_pred eEEecccCCchhHHHHHHH-----HHhCCCceeEEccCCCCChhhH-hhCCCCCeecEEE
Q 027727 5 VILLDFWASMFGIRVRIAL-----AEKGVKYEYKEQDLFNKSPLLL-RMNPVHKKIPVLI 58 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l-----~~~gi~~~~~~v~~~~~~~~~~-~~~p~~~~vP~l~ 58 (219)
+..|+.++||.|+...-.+ ...+..+....++.......+. ..... ..+|++.
T Consensus 25 lv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v-~~~Pti~ 83 (109)
T cd02993 25 LVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQL-KSFPTIL 83 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCC-CcCCEEE
Confidence 5667888899998654322 2334445555666543222332 23344 5789886
No 203
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=38.19 E-value=40 Score=26.50 Aligned_cols=21 Identities=5% Similarity=-0.179 Sum_probs=16.7
Q ss_pred ceEEecccCCchhHHHHHHHH
Q 027727 4 EVILLDFWASMFGIRVRIALA 24 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~ 24 (219)
.+.+|..+.||||++..-.+.
T Consensus 120 ~I~vFtDp~CpyC~kl~~~l~ 140 (251)
T PRK11657 120 IVYVFADPNCPYCKQFWQQAR 140 (251)
T ss_pred EEEEEECCCChhHHHHHHHHH
Confidence 366788889999999876654
No 204
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=38.15 E-value=1.3e+02 Score=22.83 Aligned_cols=57 Identities=18% Similarity=0.189 Sum_probs=33.2
Q ss_pred eEEecc---cCCchhHHHHHHHHHh-----CCCceeEEccCCCCChhhHhhCCCCCeecEEE--eCCee
Q 027727 5 VILLDF---WASMFGIRVRIALAEK-----GVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLI--HNGKS 63 (219)
Q Consensus 5 ~~L~~~---~~s~~~~~v~~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~~ 63 (219)
+.+|.. ++||.|+.+.=.++.. ++.+..+.+|.. ..++.....-. ..+|++. .+|..
T Consensus 23 i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~-~~~~l~~~~~V-~~~Pt~~~f~~g~~ 89 (215)
T TIGR02187 23 IVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTP-EDKEEAEKYGV-ERVPTTIILEEGKD 89 (215)
T ss_pred EEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCc-ccHHHHHHcCC-CccCEEEEEeCCee
Confidence 567767 7899999766665443 233334444432 34455544444 5799997 45543
No 205
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=37.00 E-value=1.4e+02 Score=20.60 Aligned_cols=60 Identities=10% Similarity=0.048 Sum_probs=35.2
Q ss_pred EEecccCCchhHHHHH-------HHHHhCCCceeEEccCCCCChhhHh--------hCCCCCeecEEE---eCCeeeehh
Q 027727 6 ILLDFWASMFGIRVRI-------ALAEKGVKYEYKEQDLFNKSPLLLR--------MNPVHKKIPVLI---HNGKSVCES 67 (219)
Q Consensus 6 ~L~~~~~s~~~~~v~~-------~l~~~gi~~~~~~v~~~~~~~~~~~--------~~p~~~~vP~l~---~~g~~l~es 67 (219)
..++..+|++|++..- +.....-.|..+.+|.... ++... .+-. +-+|+++ .+|..+..+
T Consensus 20 l~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~-~~~~~~~~~~~~~~~~~-~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 20 LSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREER-PDVDKIYMNAAQAMTGQ-GGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred EEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcC-cHHHHHHHHHHHHhcCC-CCCCEEEEECCCCCEEeee
Confidence 3456777999987632 1222344688888887542 22221 1122 3588887 378888775
No 206
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=36.93 E-value=47 Score=25.79 Aligned_cols=22 Identities=0% Similarity=0.055 Sum_probs=17.4
Q ss_pred ceEEecccCCchhHHHHHHHHH
Q 027727 4 EVILLDFWASMFGIRVRIALAE 25 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~ 25 (219)
++.+|..+.||||++..--+..
T Consensus 110 ~I~vFtDp~CpyCkkl~~~l~~ 131 (232)
T PRK10877 110 VITVFTDITCGYCHKLHEQMKD 131 (232)
T ss_pred EEEEEECCCChHHHHHHHHHHH
Confidence 3678888999999998766554
No 207
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=35.76 E-value=1.2e+02 Score=19.35 Aligned_cols=58 Identities=19% Similarity=0.059 Sum_probs=30.6
Q ss_pred eEEecccCCchhHHHHH----HH-HHhC-CCceeEEccCCC-CChhhHhhCCCCCeecEEE--eCCee
Q 027727 5 VILLDFWASMFGIRVRI----AL-AEKG-VKYEYKEQDLFN-KSPLLLRMNPVHKKIPVLI--HNGKS 63 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~----~l-~~~g-i~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~--~~g~~ 63 (219)
+.+|+.++|+.|+...= +. ...+ -.+....++... ..+.+...... ..+|+++ .+|..
T Consensus 21 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i-~~~Pt~~~~~~g~~ 87 (104)
T cd02997 21 LVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNV-KGFPTFKYFENGKF 87 (104)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCC-ccccEEEEEeCCCe
Confidence 46677888999997632 22 2221 223444444432 14445444343 4689886 35543
No 208
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=35.26 E-value=40 Score=23.24 Aligned_cols=59 Identities=12% Similarity=0.017 Sum_probs=26.7
Q ss_pred ccCCchhHHHHHH----HHHhCCCceeEEccCCC------CChhhHh--hCCCCCeecEEE--eCCeeeehhHH
Q 027727 10 FWASMFGIRVRIA----LAEKGVKYEYKEQDLFN------KSPLLLR--MNPVHKKIPVLI--HNGKSVCESSI 69 (219)
Q Consensus 10 ~~~s~~~~~v~~~----l~~~gi~~~~~~v~~~~------~~~~~~~--~~p~~~~vP~l~--~~g~~l~es~~ 69 (219)
.++||.|.++.-. +....-...++.+...+ ..-.|+. .--. ..||+|+ .++..+.|...
T Consensus 35 ~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l-~~IPTLi~~~~~~rL~e~e~ 107 (119)
T PF06110_consen 35 QSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKL-KGIPTLIRWETGERLVEEEC 107 (119)
T ss_dssp -BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC----SSSEEEECTSS-EEEHHHH
T ss_pred CcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeee-eecceEEEECCCCccchhhh
Confidence 4569999876533 33332234444444332 2223332 1123 3599998 35566666543
No 209
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=34.75 E-value=2.8e+02 Score=23.42 Aligned_cols=56 Identities=18% Similarity=0.265 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHcccCCCCcccCCCcchhhhhhhhhhhhhhhhhhhcCccccccCchHHHHHHHHhcccch
Q 027727 124 AKKEFIEVLKTLGGELGDKPFFGGDNFGYVDLCLIPYYCWFYSYETFGKFSVEAECPKFIAWVTRCLQRETV 195 (219)
Q Consensus 124 ~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~ 195 (219)
..+.+.+.|..+..+|.+-.-+-+ |+++--.|.+ .++ .+|..+.+.++.+...|..
T Consensus 118 ~~~~l~~~L~~i~~rLd~~~~ls~------div~~lllSy---------Rdi-qdydamI~Lve~l~~~p~~ 173 (374)
T PF13281_consen 118 ARKELAKELRRIRQRLDDPELLSP------DIVINLLLSY---------RDI-QDYDAMIKLVETLEALPTC 173 (374)
T ss_pred HHHHHHHHHHHHHHhhCCHhhcCh------hHHHHHHHHh---------hhh-hhHHHHHHHHHHhhccCcc
Confidence 446788888889998875443333 4433222211 011 4555566666666555544
No 210
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=33.97 E-value=1.2e+02 Score=18.99 Aligned_cols=57 Identities=18% Similarity=0.124 Sum_probs=30.8
Q ss_pred eEEecccCCchhHHHHHHHHH----hCCCceeEEccCCCCChhhHhhCCCCCeecEEE--eCCee
Q 027727 5 VILLDFWASMFGIRVRIALAE----KGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLI--HNGKS 63 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~~ 63 (219)
+..|+.++|+.|+...-.+.. .+-.+....+|... .+++....-. ..+|++. .+|..
T Consensus 18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~v-~~~P~~~~~~~g~~ 80 (101)
T TIGR01068 18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDE-NPDIAAKYGI-RSIPTLLLFKNGKE 80 (101)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCC-CHHHHHHcCC-CcCCEEEEEeCCcE
Confidence 345567778888876544332 22235555565543 3344333232 4699887 46543
No 211
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=33.61 E-value=57 Score=23.30 Aligned_cols=49 Identities=8% Similarity=0.093 Sum_probs=34.4
Q ss_pred HHHhhhhcccchhhhhccChHHHHHHHHHHHHHHHHHHcccCCCCcccC
Q 027727 99 VDFIDKKMYDTSRKTWATKGEEQEAAKKEFIEVLKTLGGELGDKPFFGG 147 (219)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G 147 (219)
-.++|+.+.|.+.--+..+........+.+....+.+|.+++|+-++..
T Consensus 8 k~YiDTaliPL~~i~~~~~~k~~a~~~E~~~~l~~~lErqfKGRv~l~P 56 (142)
T PF10673_consen 8 KEYIDTALIPLIPIDFGEDMKEAASQGEFLRLLADELERQFKGRVLLFP 56 (142)
T ss_pred hcccceeeeeccccCccccHHHHHHHHHHHHHHHHHHHHhcCceEEecC
Confidence 3566777766655555545556677778888888999999988755543
No 212
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=33.31 E-value=1.5e+02 Score=20.28 Aligned_cols=55 Identities=13% Similarity=0.057 Sum_probs=31.0
Q ss_pred EecccCCchhHHHHHHHHH-----hCCCceeEEccCCCCChhhHhhCCCCCeecEEE--eCCeee
Q 027727 7 LLDFWASMFGIRVRIALAE-----KGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLI--HNGKSV 64 (219)
Q Consensus 7 L~~~~~s~~~~~v~~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~~l 64 (219)
-|+.++||.|+...=.+.. .+. .....||... .+++....-. ..+|++. .+|..+
T Consensus 20 ~F~A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD~-~~~la~~~~V-~~iPTf~~fk~G~~v 81 (114)
T cd02954 20 RFGRDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDE-VPDFNKMYEL-YDPPTVMFFFRNKHM 81 (114)
T ss_pred EEECCCChhHHHHHHHHHHHHHHccCc-eEEEEEECCC-CHHHHHHcCC-CCCCEEEEEECCEEE
Confidence 3677778888865443322 222 3444555543 3455544443 4699997 577654
No 213
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=31.91 E-value=1.4e+02 Score=19.11 Aligned_cols=55 Identities=13% Similarity=0.041 Sum_probs=30.7
Q ss_pred eEEecccCCchhHHHHHHHH-----HhCCCceeEEccCCCCChhhHhhCCCCCeecEEE--eCCe
Q 027727 5 VILLDFWASMFGIRVRIALA-----EKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLI--HNGK 62 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~-----~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~ 62 (219)
+..|+.++|+.|+...-.+. ..| .+....++... .+......-. ..+|++. .+|.
T Consensus 22 ~v~f~a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~-~~~~~~~~~v-~~~Pt~~~~~~g~ 83 (101)
T cd03003 22 FVNFYSPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGD-DRMLCRSQGV-NSYPSLYVFPSGM 83 (101)
T ss_pred EEEEECCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCc-cHHHHHHcCC-CccCEEEEEcCCC
Confidence 45677888998886443332 223 24555666553 2344333333 5789886 4554
No 214
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=31.34 E-value=1.5e+02 Score=19.27 Aligned_cols=59 Identities=10% Similarity=0.136 Sum_probs=30.3
Q ss_pred eEEecccCCchhHHHHHHHHHh--C-CCceeEEccCCCCC--hhhHhhCCCCCeecEEE--eCCeee
Q 027727 5 VILLDFWASMFGIRVRIALAEK--G-VKYEYKEQDLFNKS--PLLLRMNPVHKKIPVLI--HNGKSV 64 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~--g-i~~~~~~v~~~~~~--~~~~~~~p~~~~vP~l~--~~g~~l 64 (219)
+.-|+.++|+.|+...=.+... . -.+.+..++..... .++.....- ..+|++. .+|..+
T Consensus 19 vv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V-~~~Pt~~~~~~G~~v 84 (103)
T cd02985 19 VLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKI-IEVPHFLFYKDGEKI 84 (103)
T ss_pred EEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCC-CcCCEEEEEeCCeEE
Confidence 3445667788887544333221 1 13445555544322 244444343 4699887 467654
No 215
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=30.68 E-value=49 Score=21.74 Aligned_cols=20 Identities=10% Similarity=0.009 Sum_probs=13.5
Q ss_pred eEEecccCCchhHHHHHHHH
Q 027727 5 VILLDFWASMFGIRVRIALA 24 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~ 24 (219)
+.+|+.+.||||++..-.+.
T Consensus 9 v~~F~~~~C~~C~~~~~~~~ 28 (112)
T PF13098_consen 9 VVVFTDPWCPYCKKLEKELF 28 (112)
T ss_dssp EEEEE-TT-HHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHH
Confidence 56778889999998755554
No 216
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=30.39 E-value=57 Score=20.24 Aligned_cols=22 Identities=5% Similarity=-0.162 Sum_probs=16.7
Q ss_pred eEEecccCCchhHHHHHHHHHh
Q 027727 5 VILLDFWASMFGIRVRIALAEK 26 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~ 26 (219)
+.+|..+.||+|....-.+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 3578888999999877666554
No 217
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=29.87 E-value=1.8e+02 Score=22.44 Aligned_cols=59 Identities=20% Similarity=0.108 Sum_probs=40.2
Q ss_pred ceEEecccCCchhHHHHHHHHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEEeCCeee
Q 027727 4 EVILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSV 64 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~l 64 (219)
.+++|.+..|..|...-=.|+.+|+-=....++-......+ -.|-. -.+|.+..||..+
T Consensus 12 ~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f~~-~~~~V-~SvP~Vf~DGel~ 70 (265)
T COG5494 12 EVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELPPFLA-FEKGV-ISVPSVFIDGELV 70 (265)
T ss_pred EEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCChHHH-hhcce-eecceEEEcCeEE
Confidence 47899999999999999999999996444444433222222 22233 4699988777653
No 218
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=29.20 E-value=66 Score=23.55 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=21.8
Q ss_pred eEEecccCCchhHHH----HHHHHHhCCCceeEEccC
Q 027727 5 VILLDFWASMFGIRV----RIALAEKGVKYEYKEQDL 37 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v----~~~l~~~gi~~~~~~v~~ 37 (219)
+.+|....||||... +-+....++.++..++.+
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~~l 37 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPILL 37 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeeeeH
Confidence 357888899999853 334445577666666543
No 219
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=28.79 E-value=91 Score=16.63 Aligned_cols=24 Identities=8% Similarity=0.170 Sum_probs=19.4
Q ss_pred CeecEEEeCCeeeehhHHHHHHHH
Q 027727 52 KKIPVLIHNGKSVCESSIIVQYID 75 (219)
Q Consensus 52 ~~vP~l~~~g~~l~es~~I~~yL~ 75 (219)
|.+|....++..++....|.+|+.
T Consensus 25 g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 25 GELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred CCCCeEEeCCeEEEeHHHHHHHHh
Confidence 678887677888888888888875
No 220
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.55 E-value=74 Score=20.02 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=21.5
Q ss_pred CchhHHHHHHHHHhCCCceeEEccC
Q 027727 13 SMFGIRVRIALAEKGVKYEYKEQDL 37 (219)
Q Consensus 13 s~~~~~v~~~l~~~gi~~~~~~v~~ 37 (219)
-+|++|+.-.++..|++|+..+...
T Consensus 15 vGF~rk~L~I~E~~~is~Eh~PSGI 39 (76)
T cd04911 15 VGFGRKLLSILEDNGISYEHMPSGI 39 (76)
T ss_pred hcHHHHHHHHHHHcCCCEeeecCCC
Confidence 5689999999999999999886543
No 221
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=28.48 E-value=1.5e+02 Score=18.19 Aligned_cols=46 Identities=22% Similarity=0.487 Sum_probs=29.1
Q ss_pred eecEEEeCCeeeehhHHHHHHHHhhcCCCC----C-----CCCCCHHHHHHHHHHHH
Q 027727 53 KIPVLIHNGKSVCESSIIVQYIDEVWKDKA----P-----LLPYDPYQRAQARFWVD 100 (219)
Q Consensus 53 ~vP~l~~~g~~l~es~~I~~yL~~~~~~~~----~-----l~p~~~~~~a~~~~~~~ 100 (219)
+=||+..+| ..+|-.+|.+||.+....++ . +.| +...+..+..|+.
T Consensus 15 ~dPVi~~~G-~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~p-n~~Lk~~I~~~~~ 69 (73)
T PF04564_consen 15 RDPVILPSG-HTYERSAIERWLEQNGGTDPFTRQPLSESDLIP-NRALKSAIEEWCA 69 (73)
T ss_dssp SSEEEETTS-EEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE--HHHHHHHHHHHH
T ss_pred hCceeCCcC-CEEcHHHHHHHHHcCCCCCCCCCCcCCcccceE-CHHHHHHHHHHHH
Confidence 458888778 77999999999988332111 1 222 3455667766664
No 222
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=28.15 E-value=1.7e+02 Score=18.95 Aligned_cols=54 Identities=15% Similarity=0.079 Sum_probs=29.3
Q ss_pred eEEecccCCchhHHHHHHH-----HHhCCCceeEEccCCCCChhhHhhCCCCCeecEEE--eCC
Q 027727 5 VILLDFWASMFGIRVRIAL-----AEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLI--HNG 61 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l-----~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g 61 (219)
+..|+.++|+.|+...=.+ ...+ +....+|.....+......-. ..+|++. ++|
T Consensus 22 lV~F~a~WC~~C~~~~p~l~~la~~~~~--~~~~~vd~~~~~~~l~~~~~V-~~~PT~~lf~~g 82 (100)
T cd02999 22 AVLFYASWCPFSASFRPHFNALSSMFPQ--IRHLAIEESSIKPSLLSRYGV-VGFPTILLFNST 82 (100)
T ss_pred EEEEECCCCHHHHhHhHHHHHHHHHhcc--CceEEEECCCCCHHHHHhcCC-eecCEEEEEcCC
Confidence 4556777788888665333 2334 334455544233444433333 4689886 455
No 223
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=27.62 E-value=2.2e+02 Score=19.97 Aligned_cols=59 Identities=12% Similarity=0.045 Sum_probs=29.4
Q ss_pred eEEecccCCchhHHHHHHHH----HhCCCceeEEccCCCC-ChhhHhhCCCCCeecEEE--e-CCeee
Q 027727 5 VILLDFWASMFGIRVRIALA----EKGVKYEYKEQDLFNK-SPLLLRMNPVHKKIPVLI--H-NGKSV 64 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~----~~gi~~~~~~v~~~~~-~~~~~~~~p~~~~vP~l~--~-~g~~l 64 (219)
+..|+.++|+.|+...=.+. ..+-.+.++.++.... ...+....-. ..+|+++ + +|.++
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V-~~iPt~v~~~~~G~~v 90 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRV-DGIPHFVFLDREGNEE 90 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCC-CCCCEEEEECCCCCEE
Confidence 34566777888886543332 2222244444444321 1233333333 4689876 3 56554
No 224
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=26.97 E-value=2.6e+02 Score=20.55 Aligned_cols=58 Identities=7% Similarity=-0.062 Sum_probs=32.2
Q ss_pred EEecccCCchhHHHHHHHH---HhCCCceeEEccCCCCChhhHhhCCCCCeecEEE--eCCeeeeh
Q 027727 6 ILLDFWASMFGIRVRIALA---EKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLI--HNGKSVCE 66 (219)
Q Consensus 6 ~L~~~~~s~~~~~v~~~l~---~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~~l~e 66 (219)
..|+.++|+.|+.+--.+. ..--.+.++.|+.... ......+. ..+|++. .+|..+..
T Consensus 88 V~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~--~l~~~f~v-~~vPTlllyk~G~~v~~ 150 (175)
T cd02987 88 VHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT--GASDEFDT-DALPALLVYKGGELIGN 150 (175)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch--hhHHhCCC-CCCCEEEEEECCEEEEE
Confidence 3456677888875432221 1111345555554432 44455565 6799997 48876654
No 225
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=26.52 E-value=3.1e+02 Score=21.24 Aligned_cols=73 Identities=12% Similarity=0.050 Sum_probs=39.0
Q ss_pred eEEecccCCchhHHHHHHHHH----hCCCceeEEccCCCCChhhHhhCCCCCeecEEE--eCCeeee------hhHHHHH
Q 027727 5 VILLDFWASMFGIRVRIALAE----KGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLI--HNGKSVC------ESSIIVQ 72 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~~l~------es~~I~~ 72 (219)
+..|+.++|+.|+...-.+.. .+-.+....+|... .++.....-. ..+|++. .+|..+. ....|.+
T Consensus 56 lV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~-~~~l~~~~~I-~~~PTl~~f~~G~~v~~~~G~~s~e~L~~ 133 (224)
T PTZ00443 56 FVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATR-ALNLAKRFAI-KGYPTLLLFDKGKMYQYEGGDRSTEKLAA 133 (224)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcc-cHHHHHHcCC-CcCCEEEEEECCEEEEeeCCCCCHHHHHH
Confidence 456778889988855333222 22124444455432 3445444443 5789887 5665431 2345556
Q ss_pred HHHhhcC
Q 027727 73 YIDEVWK 79 (219)
Q Consensus 73 yL~~~~~ 79 (219)
|+.+.+.
T Consensus 134 fi~~~~~ 140 (224)
T PTZ00443 134 FALGDFK 140 (224)
T ss_pred HHHHHHH
Confidence 6655543
No 226
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=26.47 E-value=56 Score=24.50 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=21.0
Q ss_pred CCeeeehhHHHHHHHHhhcC-CCCCCCC
Q 027727 60 NGKSVCESSIIVQYIDEVWK-DKAPLLP 86 (219)
Q Consensus 60 ~g~~l~es~~I~~yL~~~~~-~~~~l~p 86 (219)
.+.+|+||..|-+|+.+.++ .+..+.|
T Consensus 154 ad~lIaDs~~I~~y~~~~y~~~~s~~Ia 181 (185)
T PF09314_consen 154 ADRLIADSKGIQDYIKERYGRKKSTFIA 181 (185)
T ss_pred CCEEEEcCHHHHHHHHHHcCCCCcEEec
Confidence 45789999999999999998 4444443
No 227
>PF13728 TraF: F plasmid transfer operon protein
Probab=26.41 E-value=1e+02 Score=23.67 Aligned_cols=52 Identities=13% Similarity=0.034 Sum_probs=35.0
Q ss_pred eEEecccCCchhHH----HHHHHHHhCCCceeEEccCC------C--C-ChhhHhhCCCCCeecEEE
Q 027727 5 VILLDFWASMFGIR----VRIALAEKGVKYEYKEQDLF------N--K-SPLLLRMNPVHKKIPVLI 58 (219)
Q Consensus 5 ~~L~~~~~s~~~~~----v~~~l~~~gi~~~~~~v~~~------~--~-~~~~~~~~p~~~~vP~l~ 58 (219)
+.+|+.+.||+|+. ++.+....|+++..+.+|.. + . +......+. ..+|++.
T Consensus 124 L~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v--~~~Pal~ 188 (215)
T PF13728_consen 124 LFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGV--KVTPALF 188 (215)
T ss_pred EEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCC--CcCCEEE
Confidence 56777788999984 67778888998888887732 1 1 122223444 4789887
No 228
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=26.24 E-value=75 Score=23.49 Aligned_cols=32 Identities=19% Similarity=0.134 Sum_probs=19.6
Q ss_pred eEEecccCCchhHHHH----HHHHHh----CCCceeEEcc
Q 027727 5 VILLDFWASMFGIRVR----IALAEK----GVKYEYKEQD 36 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~----~~l~~~----gi~~~~~~v~ 36 (219)
+.+|+...||||.... -++... ++.++.+++.
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~~ 40 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPFE 40 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeeee
Confidence 4678888999999443 333444 4555555543
No 229
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=26.09 E-value=82 Score=19.30 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=24.8
Q ss_pred EecccCCchhHHHHHHHHHhCCCceeEEcc
Q 027727 7 LLDFWASMFGIRVRIALAEKGVKYEYKEQD 36 (219)
Q Consensus 7 L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 36 (219)
+..|.....+.++.-.|+..|++++.+++.
T Consensus 5 ~i~F~st~~a~~~ek~lk~~gi~~~liP~P 34 (73)
T PF11823_consen 5 LITFPSTHDAMKAEKLLKKNGIPVRLIPTP 34 (73)
T ss_pred EEEECCHHHHHHHHHHHHHCCCcEEEeCCC
Confidence 445566778999999999999999998774
No 230
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=26.03 E-value=2.2e+02 Score=19.50 Aligned_cols=55 Identities=9% Similarity=0.027 Sum_probs=28.4
Q ss_pred cCCchhHHHHHH----HHHhCCCceeEEccCCC------CChhhHhhCCCCC-eecEEE--eCCeeeeh
Q 027727 11 WASMFGIRVRIA----LAEKGVKYEYKEQDLFN------KSPLLLRMNPVHK-KIPVLI--HNGKSVCE 66 (219)
Q Consensus 11 ~~s~~~~~v~~~----l~~~gi~~~~~~v~~~~------~~~~~~~~~p~~~-~vP~l~--~~g~~l~e 66 (219)
++||.|+...-. .....-.+.++.|+..+ ...++....-. . .+|++. .+|..+.|
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I-~~~iPT~~~~~~~~~l~~ 105 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL-TTGVPTLLRWKTPQRLVE 105 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc-ccCCCEEEEEcCCceecc
Confidence 679988865432 33333234455555432 23455433222 3 599997 35555544
No 231
>PRK09266 hypothetical protein; Provisional
Probab=25.73 E-value=1.4e+02 Score=23.43 Aligned_cols=58 Identities=10% Similarity=0.151 Sum_probs=39.3
Q ss_pred HHHHhCCCceeEEccCCC--CChhhHhhCCCCCeecEEEeCCeeeehhHHHHHHHHhhcC
Q 027727 22 ALAEKGVKYEYKEQDLFN--KSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDEVWK 79 (219)
Q Consensus 22 ~l~~~gi~~~~~~v~~~~--~~~~~~~~~p~~~~vP~l~~~g~~l~es~~I~~yL~~~~~ 79 (219)
.+...|++++...++..+ ..++..-.|...|-+||-..|+..+.+...|.+.|.+.+.
T Consensus 200 ~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i~~~~~~~~~~~~~~l~~~~~ 259 (266)
T PRK09266 200 GLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAIDDVALPDSHALLELLRRAYE 259 (266)
T ss_pred HHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEECCEECCCCchHHHHHHHHHH
Confidence 456678998888887642 2233333444338899998888777655788888877665
No 232
>PF04659 Arch_fla_DE: Archaeal flagella protein ; InterPro: IPR006752 Archaeal flagella are unique motility structures, and the absence of bacterial structural motility genes in the complete genome sequences of flagellated archaeal species has always suggested that archaeal flagellar biogenesis is likely mediated by novel components. FlaD and FlaE, are present in the cell as membrane-associated proteins but are not major components of isolated flagellar filaments. Interestingly, flaD was found to encode two proteins, each translated from a separate ribosome binding site. This group of sequences contain the archaeal flaD and flaE proteins. The conserved region that defines these sequences is found in the N-teminal region of flaE but towards the C-terminal region of flaD [].; GO: 0001539 ciliary or flagellar motility
Probab=25.51 E-value=2.1e+02 Score=19.05 Aligned_cols=72 Identities=14% Similarity=0.191 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHHHHHHHhhhhcccch----hhhhccChHHHHHHHHHHHHHHHHHHcccCCCCcccCCCcchhhhh
Q 027727 85 LPYDPYQRAQARFWVDFIDKKMYDTS----RKTWATKGEEQEAAKKEFIEVLKTLGGELGDKPFFGGDNFGYVDLC 156 (219)
Q Consensus 85 ~p~~~~~~a~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~ 156 (219)
.|+++...-.+..|+.++-+...... ..++..-+=..+....++.+.+..+...-..-.+-....+|..|-.
T Consensus 11 iP~~~~s~~~~~eWLefLve~~G~~~~~~~L~YY~~igWISe~V~~~L~~~~~G~~~~~~~~~~~~~~~Lt~~DH~ 86 (99)
T PF04659_consen 11 IPEDYVSEIVVFEWLEFLVERVGHNNAADALDYYESIGWISEEVREQLLKYLKGFKYDHDDFEWKPSWKLTIDDHI 86 (99)
T ss_pred CCcchHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcCCcCHHHHHHHHHHHhCCCCCccccccCCCCCCCHHHHH
Confidence 57777777788889888888765331 1222221222344445555555444432222222334678887754
No 233
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=25.29 E-value=1.9e+02 Score=18.42 Aligned_cols=56 Identities=13% Similarity=0.050 Sum_probs=31.3
Q ss_pred eEEecccCCchhHHHHHHHH-----HhCCCceeEEccCCCCChhhHhhCCCCCeecEEE--eCCe
Q 027727 5 VILLDFWASMFGIRVRIALA-----EKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLI--HNGK 62 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~-----~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~ 62 (219)
+..|+.++|+.|+...=.+. ..+..+....+|... .+.+...... ..+|++. .+|.
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~-~~~~~~~~~i-~~~Pt~~~~~~g~ 82 (101)
T cd02994 20 MIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ-EPGLSGRFFV-TALPTIYHAKDGV 82 (101)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC-CHhHHHHcCC-cccCEEEEeCCCC
Confidence 55677888999986543322 223445555565543 3344433333 5789887 3553
No 234
>PRK15371 effector protein YopJ; Provisional
Probab=25.21 E-value=1.7e+02 Score=23.72 Aligned_cols=66 Identities=12% Similarity=0.251 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHcccCCCCcccCCCcchhhhhhhhhhhhhhhhhhhcCccccccCchHHHHHHHHh
Q 027727 122 EAAKKEFIEVLKTLGGELGDKPFFGGDNFGYVDLCLIPYYCWFYSYETFGKFSVEAECPKFIAWVTRCL 190 (219)
Q Consensus 122 ~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~ 190 (219)
....++|...++.||..++++.|+ -..++..|+-+.+.|....- .+.++.++ .-+..-.+++..++
T Consensus 22 ~~~~~~L~~~i~~le~~~~~G~~~-~~~~~~~Di~~lp~lv~~~N-~r~P~LNL-~~f~s~~~f~~aik 87 (287)
T PRK15371 22 EISNEELKNIITQLEDDIADGSWI-HKNYARTDLEVMPALVAQAN-NKYPEMNL-KLVTSPLDLSIEIK 87 (287)
T ss_pred hhhHHHHHHHHHHHHHHHHcCCCC-CchhHHhhHHhhHHHHHHHh-ccCCCCCe-eecCCHHHHHHHHH
Confidence 356778999999999999988888 46799999999999865431 23455555 33344455555555
No 235
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=24.99 E-value=68 Score=19.09 Aligned_cols=31 Identities=16% Similarity=0.072 Sum_probs=19.7
Q ss_pred EEecccCCchhHHHHHHHHHhCCCceeEEcc
Q 027727 6 ILLDFWASMFGIRVRIALAEKGVKYEYKEQD 36 (219)
Q Consensus 6 ~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 36 (219)
+||.+....-+..++-+|+..||++......
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~ 32 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENGIPAFVKNEH 32 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT--EE--S--
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEECCc
Confidence 6777776677889999999999999877544
No 236
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=24.73 E-value=97 Score=19.60 Aligned_cols=52 Identities=12% Similarity=-0.078 Sum_probs=28.6
Q ss_pred eEEecccCCchhHHHHHHH-----HHhCC-CceeEEccCCCCChhhHhhCCCCCeecEEE
Q 027727 5 VILLDFWASMFGIRVRIAL-----AEKGV-KYEYKEQDLFNKSPLLLRMNPVHKKIPVLI 58 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l-----~~~gi-~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~ 58 (219)
+..|+.++|+.|+...-.+ ...+- .+....++.. ..+........ ..+|.+.
T Consensus 17 ~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~i-~~~P~~~ 74 (102)
T TIGR01126 17 LVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT-AEKDLASRFGV-SGFPTIK 74 (102)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc-chHHHHHhCCC-CcCCEEE
Confidence 5678888899998743322 23322 1444444433 23444444444 5699885
No 237
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=24.41 E-value=89 Score=21.40 Aligned_cols=25 Identities=12% Similarity=0.256 Sum_probs=20.4
Q ss_pred CeecEEE-eCCeeeehhHHHHHHHHh
Q 027727 52 KKIPVLI-HNGKSVCESSIIVQYIDE 76 (219)
Q Consensus 52 ~~vP~l~-~~g~~l~es~~I~~yL~~ 76 (219)
.++|+++ ++..++.+...|.+-+..
T Consensus 82 ~k~PAVVfD~~~VVYG~tDV~~A~~~ 107 (114)
T PF07511_consen 82 TKYPAVVFDDRYVVYGETDVARALAR 107 (114)
T ss_pred cccCEEEEcCCeEEecccHHHHHHHH
Confidence 5899998 667899999988877754
No 238
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=24.04 E-value=1.2e+02 Score=20.18 Aligned_cols=29 Identities=21% Similarity=0.034 Sum_probs=23.6
Q ss_pred EEecccCCchhHHHHHHHHHhCCCceeEE
Q 027727 6 ILLDFWASMFGIRVRIALAEKGVKYEYKE 34 (219)
Q Consensus 6 ~L~~~~~s~~~~~v~~~l~~~gi~~~~~~ 34 (219)
.|......|...-++.+++.+|+|++...
T Consensus 59 vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~ 87 (100)
T PF15608_consen 59 VLVRDPDDPDLAHLLLLAEEKGVPVEVYP 87 (100)
T ss_pred EEECCCCCccHHHHHHHHHHcCCcEEEeC
Confidence 35566678889999999999999998763
No 239
>COG3150 Predicted esterase [General function prediction only]
Probab=23.61 E-value=1.1e+02 Score=22.76 Aligned_cols=34 Identities=15% Similarity=-0.084 Sum_probs=28.6
Q ss_pred eEEecccCCchhHHHHHHHHHhCCCceeEEccCC
Q 027727 5 VILLDFWASMFGIRVRIALAEKGVKYEYKEQDLF 38 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~ 38 (219)
+-|.+|..||.+.+..+.+++.+-.+..+.+...
T Consensus 3 lYlHGFnSSP~shka~l~~q~~~~~~~~i~y~~p 36 (191)
T COG3150 3 LYLHGFNSSPGSHKAVLLLQFIDEDVRDIEYSTP 36 (191)
T ss_pred EEEecCCCCcccHHHHHHHHHHhccccceeeecC
Confidence 4577999999999999999999988887776543
No 240
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=23.03 E-value=1.3e+02 Score=21.63 Aligned_cols=31 Identities=10% Similarity=0.014 Sum_probs=27.1
Q ss_pred CCCceEEecccCCchhHHHHHHHHHhCCCce
Q 027727 1 MADEVILLDFWASMFGIRVRIALAEKGVKYE 31 (219)
Q Consensus 1 M~~~~~L~~~~~s~~~~~v~~~l~~~gi~~~ 31 (219)
|+..+.|.+.++|+=+.-.+.+++..|++|-
T Consensus 1 ~~~~i~~~G~~GsGKst~~~~la~~lg~~~~ 31 (171)
T PRK03731 1 MTQPLFLVGARGCGKTTVGMALAQALGYRFV 31 (171)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 6667888899999999999999999999864
No 241
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=22.87 E-value=1.4e+02 Score=21.87 Aligned_cols=32 Identities=13% Similarity=-0.044 Sum_probs=20.3
Q ss_pred ceEEecccCCchhHHH----HHHHHHh--CCCceeEEc
Q 027727 4 EVILLDFWASMFGIRV----RIALAEK--GVKYEYKEQ 35 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v----~~~l~~~--gi~~~~~~v 35 (219)
++.+|..+.||||... +-+.+.. +++++....
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~~ 39 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHLG 39 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEec
Confidence 4788999999999843 3333343 555555433
No 242
>PF11417 Inhibitor_G39P: Loader and inhibitor of phage G40P; InterPro: IPR024424 G39P inhibits the initiation of DNA replication by blocking G40P replicative helicase. G39P has a bipartite stricture consisting of a folded N-terminal domain and an unfolded C-terminal domain. The C-terminal is essential for helicase interaction [].; PDB: 1NO1_B.
Probab=22.68 E-value=2e+02 Score=17.78 Aligned_cols=37 Identities=16% Similarity=0.511 Sum_probs=22.3
Q ss_pred hhHHHHHHHHhhcCC-CCCCCCCCHHHHHHHHHHHHHhhh
Q 027727 66 ESSIIVQYIDEVWKD-KAPLLPYDPYQRAQARFWVDFIDK 104 (219)
Q Consensus 66 es~~I~~yL~~~~~~-~~~l~p~~~~~~a~~~~~~~~~~~ 104 (219)
|..-|+.++...||. ...+.+.+ .+..+..|.+.+.+
T Consensus 5 E~~~ll~~I~~aYP~~~~~f~~~~--~k~~v~~W~~~L~d 42 (71)
T PF11417_consen 5 ETAKLLKLIKAAYPQWAGNFKPTD--SKETVDLWYDMLKD 42 (71)
T ss_dssp HHHHHHHHHHHHST---TT---ST--HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCcchhccchhh--HHHHHHHHHHHHHh
Confidence 566788889888882 12344433 35567888877755
No 243
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.33 E-value=1.3e+02 Score=24.02 Aligned_cols=57 Identities=16% Similarity=0.163 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHhCCCceeEEccCCC-CChhhHhh----CCCCCeecEEEeCCeeeehhHHHHH
Q 027727 15 FGIRVRIALAEKGVKYEYKEQDLFN-KSPLLLRM----NPVHKKIPVLIHNGKSVCESSIIVQ 72 (219)
Q Consensus 15 ~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~----~p~~~~vP~l~~~g~~l~es~~I~~ 72 (219)
-|..||.+|+-.+|.|+...|++.. ...++..+ .-. -.+|.+..+|..|-.-..|.+
T Consensus 149 ~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~-~~LPrVFV~GryIGgaeeV~~ 210 (281)
T KOG2824|consen 149 DCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKA-VSLPRVFVKGRYIGGAEEVVR 210 (281)
T ss_pred HHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhccccc-CccCeEEEccEEeccHHHhhh
Confidence 3778999999999999999998872 23344322 112 468987789988887666655
No 244
>PF12728 HTH_17: Helix-turn-helix domain
Probab=22.21 E-value=1.5e+02 Score=16.29 Aligned_cols=25 Identities=20% Similarity=0.204 Sum_probs=20.9
Q ss_pred CeecEEEeCCeeeehhHHHHHHHHh
Q 027727 52 KKIPVLIHNGKSVCESSIIVQYIDE 76 (219)
Q Consensus 52 ~~vP~l~~~g~~l~es~~I~~yL~~ 76 (219)
|.+|....++...+.-..|-+|+.+
T Consensus 25 g~i~~~~~g~~~~~~~~~l~~~~~~ 49 (51)
T PF12728_consen 25 GKIPPFKIGRKWRIPKSDLDRWLER 49 (51)
T ss_pred CCCCeEEeCCEEEEeHHHHHHHHHh
Confidence 6788888778888888999999875
No 245
>PRK14531 adenylate kinase; Provisional
Probab=21.87 E-value=1.4e+02 Score=21.95 Aligned_cols=30 Identities=17% Similarity=0.176 Sum_probs=26.9
Q ss_pred CCCceEEecccCCchhHHHHHHHHHhCCCc
Q 027727 1 MADEVILLDFWASMFGIRVRIALAEKGVKY 30 (219)
Q Consensus 1 M~~~~~L~~~~~s~~~~~v~~~l~~~gi~~ 30 (219)
|.+++.++|.|+|+-+--.+.+++..|+++
T Consensus 1 ~~~~i~i~G~pGsGKsT~~~~la~~~g~~~ 30 (183)
T PRK14531 1 MKQRLLFLGPPGAGKGTQAARLCAAHGLRH 30 (183)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 677889999999999999999999998875
No 246
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.84 E-value=3.6e+02 Score=22.02 Aligned_cols=73 Identities=18% Similarity=0.156 Sum_probs=45.1
Q ss_pred eEEecccCCchhHHHHHH----HHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEE--eCCeeeeh------hHHHHH
Q 027727 5 VILLDFWASMFGIRVRIA----LAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLI--HNGKSVCE------SSIIVQ 72 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~----l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~~l~e------s~~I~~ 72 (219)
+.+|+.++|+-|....=. ....+=.|....|+.+.. +......-. ..||++. .+|..|.+ -..|-+
T Consensus 47 lV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~-p~vAaqfgi-qsIPtV~af~dGqpVdgF~G~qPesqlr~ 124 (304)
T COG3118 47 LVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAE-PMVAAQFGV-QSIPTVYAFKDGQPVDGFQGAQPESQLRQ 124 (304)
T ss_pred EEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcc-hhHHHHhCc-CcCCeEEEeeCCcCccccCCCCcHHHHHH
Confidence 455666777777654333 334455678888877643 444433333 5799987 47655433 357889
Q ss_pred HHHhhcC
Q 027727 73 YIDEVWK 79 (219)
Q Consensus 73 yL~~~~~ 79 (219)
+|++..+
T Consensus 125 ~ld~~~~ 131 (304)
T COG3118 125 FLDKVLP 131 (304)
T ss_pred HHHHhcC
Confidence 9988777
No 247
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=21.42 E-value=3.1e+02 Score=19.50 Aligned_cols=75 Identities=12% Similarity=0.080 Sum_probs=45.6
Q ss_pred CceEEecccCCchhHHHHHHHHHhCCCceeEEccCCC-CChhhHh---hCCCCC-eecEEEeCCeeeehhHHHHHHHHhh
Q 027727 3 DEVILLDFWASMFGIRVRIALAEKGVKYEYKEQDLFN-KSPLLLR---MNPVHK-KIPVLIHNGKSVCESSIIVQYIDEV 77 (219)
Q Consensus 3 ~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~---~~p~~~-~vP~l~~~g~~l~es~~I~~yL~~~ 77 (219)
..+++++...|++|-..--+|.-++-.-.....+.-. ....... ..|. . ..=.++.+|..+.+|.|+++-+...
T Consensus 8 p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g~~~l~~~~l~~~-~~~s~~~~~~g~~~~~sdA~~~i~~~L 86 (137)
T COG3011 8 PDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEPGQALLEAAGLDPE-DVDSVLLVEAGQLLVGSDAAIRILRLL 86 (137)
T ss_pred CCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCchhhhHHhhcCCChh-hhheeeEecCCceEeccHHHHHHHHHC
Confidence 4467777888999998777777776665555444331 1122222 2222 1 1122235899999999999988665
Q ss_pred c
Q 027727 78 W 78 (219)
Q Consensus 78 ~ 78 (219)
-
T Consensus 87 ~ 87 (137)
T COG3011 87 P 87 (137)
T ss_pred C
Confidence 4
No 248
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=20.90 E-value=2.3e+02 Score=17.84 Aligned_cols=56 Identities=14% Similarity=0.017 Sum_probs=30.3
Q ss_pred eEEecccCCchhHHHHH-----HHHHhC--CCceeEEccCCCCChhhHhhCCCCCeecEEE--eCCe
Q 027727 5 VILLDFWASMFGIRVRI-----ALAEKG--VKYEYKEQDLFNKSPLLLRMNPVHKKIPVLI--HNGK 62 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~-----~l~~~g--i~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~ 62 (219)
+..|+.++|+.|+...- .-...+ -.+....+|.... +...+.... ..+|++. .+|.
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~v-~~~Pt~~~~~~g~ 84 (102)
T cd03005 20 FVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH-RELCSEFQV-RGYPTLLLFKDGE 84 (102)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC-hhhHhhcCC-CcCCEEEEEeCCC
Confidence 45667778998886432 223333 2455566665432 233323333 4699876 4554
No 249
>PTZ00102 disulphide isomerase; Provisional
Probab=20.72 E-value=5.4e+02 Score=21.99 Aligned_cols=73 Identities=19% Similarity=0.114 Sum_probs=42.5
Q ss_pred eEEecccCCchhHHHHH-----H--HHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEE--eCCeee-----ehhHHH
Q 027727 5 VILLDFWASMFGIRVRI-----A--LAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLI--HNGKSV-----CESSII 70 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~-----~--l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~~l-----~es~~I 70 (219)
+..|+.++|+.|++..= + +...+-++....+|... ..++....-. ..+|++. .+|..+ .....|
T Consensus 53 lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~-~~~l~~~~~i-~~~Pt~~~~~~g~~~~y~g~~~~~~l 130 (477)
T PTZ00102 53 LVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATE-EMELAQEFGV-RGYPTIKFFNKGNPVNYSGGRTADGI 130 (477)
T ss_pred EEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCC-CHHHHHhcCC-CcccEEEEEECCceEEecCCCCHHHH
Confidence 56778889999986542 1 12223456666666543 2333333233 4589886 455431 245678
Q ss_pred HHHHHhhcC
Q 027727 71 VQYIDEVWK 79 (219)
Q Consensus 71 ~~yL~~~~~ 79 (219)
.+|+.+..+
T Consensus 131 ~~~l~~~~~ 139 (477)
T PTZ00102 131 VSWIKKLTG 139 (477)
T ss_pred HHHHHHhhC
Confidence 899988765
No 250
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=20.70 E-value=5.2e+02 Score=21.81 Aligned_cols=73 Identities=16% Similarity=0.089 Sum_probs=42.2
Q ss_pred eEEecccCCchhHHHHHHH-----HHh--CCCceeEEccCCCCChhhHhhCCCCCeecEEE--eCCee-------eehhH
Q 027727 5 VILLDFWASMFGIRVRIAL-----AEK--GVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLI--HNGKS-------VCESS 68 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l-----~~~--gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~~-------l~es~ 68 (219)
+.+|+.++|+.|++..-.+ ... +-++....++.... .+....... ..+|++. .+|.. -.+..
T Consensus 22 ~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-~~l~~~~~i-~~~Pt~~~~~~g~~~~~~~~g~~~~~ 99 (462)
T TIGR01130 22 LVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE-KDLAQKYGV-SGYPTLKIFRNGEDSVSDYNGPRDAD 99 (462)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc-HHHHHhCCC-ccccEEEEEeCCccceeEecCCCCHH
Confidence 5667888899998754222 222 32356666665432 344433333 4689886 34443 12456
Q ss_pred HHHHHHHhhcC
Q 027727 69 IIVQYIDEVWK 79 (219)
Q Consensus 69 ~I~~yL~~~~~ 79 (219)
.|.+++.+..+
T Consensus 100 ~l~~~i~~~~~ 110 (462)
T TIGR01130 100 GIVKYMKKQSG 110 (462)
T ss_pred HHHHHHHHhcC
Confidence 78888877765
No 251
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=20.70 E-value=1.3e+02 Score=20.71 Aligned_cols=50 Identities=14% Similarity=0.002 Sum_probs=25.1
Q ss_pred ccCCchhHHHHHHHH-----HhCCCceeEEccCCC--CChhhHhhCCCCCeecEEEeCC
Q 027727 10 FWASMFGIRVRIALA-----EKGVKYEYKEQDLFN--KSPLLLRMNPVHKKIPVLIHNG 61 (219)
Q Consensus 10 ~~~s~~~~~v~~~l~-----~~gi~~~~~~v~~~~--~~~~~~~~~p~~~~vP~l~~~g 61 (219)
..+||.|+.-.-.|. ..+..++.+.|.... ....+.+.... ..|++.|.+
T Consensus 33 ~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~--~~p~~~D~~ 89 (149)
T cd02970 33 GFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFL--PFPVYADPD 89 (149)
T ss_pred CCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCC--CCeEEECCc
Confidence 457999986333222 222345555555432 12234444443 478777644
No 252
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=20.69 E-value=2.3e+02 Score=17.65 Aligned_cols=53 Identities=23% Similarity=0.220 Sum_probs=33.5
Q ss_pred ceEEecccCCchhHHH-----HHHHHHhCCCceeEEccCCCCChhhHhhCCCCCeecEEE
Q 027727 4 EVILLDFWASMFGIRV-----RIALAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLI 58 (219)
Q Consensus 4 ~~~L~~~~~s~~~~~v-----~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~ 58 (219)
.++||....+|.|++. +++-++.+-+|+...+|... .|+....... --.|+|+
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~-~P~lAe~~~i-vAtPtLv 60 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLK-QPQLAEEDKI-VATPTLV 60 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEccc-CHhHHhhCCE-EEechhh
Confidence 4789988887887754 33444557789999888764 3444433333 3456665
No 253
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=20.32 E-value=1.8e+02 Score=18.68 Aligned_cols=52 Identities=10% Similarity=-0.109 Sum_probs=28.6
Q ss_pred eEEecccCCchhHHHHHHHH----HhCCCceeEEccCCCCChhhHhhCCCCCeecEEE
Q 027727 5 VILLDFWASMFGIRVRIALA----EKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLI 58 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~----~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~ 58 (219)
+..|+.++|+.|++..=.+. ..+-.+....+|... .+++...... ..+|++.
T Consensus 23 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~i-~~~Pt~~ 78 (104)
T cd03004 23 LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK-YESLCQQANI-RAYPTIR 78 (104)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc-hHHHHHHcCC-CcccEEE
Confidence 45677888999886533332 222224455555543 3444433343 5789887
No 254
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=20.31 E-value=2.8e+02 Score=20.22 Aligned_cols=33 Identities=9% Similarity=-0.253 Sum_probs=21.5
Q ss_pred EEec-ccCCchhH-------HHHHHHHHhCCCceeEEccCC
Q 027727 6 ILLD-FWASMFGI-------RVRIALAEKGVKYEYKEQDLF 38 (219)
Q Consensus 6 ~L~~-~~~s~~~~-------~v~~~l~~~gi~~~~~~v~~~ 38 (219)
.||. ..+||-|+ +..-.+...+-+++.+.|+.+
T Consensus 37 ~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D 77 (157)
T KOG2501|consen 37 GLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSD 77 (157)
T ss_pred EEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecC
Confidence 4443 33477666 344456667778999999866
No 255
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=20.27 E-value=2.5e+02 Score=18.02 Aligned_cols=57 Identities=16% Similarity=-0.028 Sum_probs=30.8
Q ss_pred eEEecccCCchhHHHHHHHH----HhCCCceeEEccCCC-CChhhHhhCCCCCeecEEE--eCCe
Q 027727 5 VILLDFWASMFGIRVRIALA----EKGVKYEYKEQDLFN-KSPLLLRMNPVHKKIPVLI--HNGK 62 (219)
Q Consensus 5 ~~L~~~~~s~~~~~v~~~l~----~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~--~~g~ 62 (219)
+..|+.++|+.|+...-.+. ..+-.+....++... ..+++...... ..+|++. .+|.
T Consensus 22 lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i-~~~Pt~~~~~~~~ 85 (109)
T cd03002 22 LVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGV-QGFPTLKVFRPPK 85 (109)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCC-CcCCEEEEEeCCC
Confidence 56778888999986533222 222224444455442 23444444344 5799887 4444
No 256
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=20.20 E-value=82 Score=18.84 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=15.6
Q ss_pred ceEEecccC----CchhHHHHHHHHH
Q 027727 4 EVILLDFWA----SMFGIRVRIALAE 25 (219)
Q Consensus 4 ~~~L~~~~~----s~~~~~v~~~l~~ 25 (219)
+++||.+-. |.||+|+-.+|+.
T Consensus 2 ~mKLYRfiTGpDDssFChrvta~LN~ 27 (70)
T COG5515 2 KMKLYRFITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred cceeeEeecCCchHHHHHHHHHHHhC
Confidence 367776543 6699999887764
No 257
>COG5460 Uncharacterized conserved protein [Function unknown]
Probab=20.06 E-value=2.4e+02 Score=17.76 Aligned_cols=61 Identities=16% Similarity=0.152 Sum_probs=31.9
Q ss_pred HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhhhcccchhhhhc-cChHHHHHHHHHHHHHHHHHHc
Q 027727 69 IIVQYIDEVWKDKAPLLPYDPYQRAQARFWVDFIDKKMYDTSRKTWA-TKGEEQEAAKKEFIEVLKTLGG 137 (219)
Q Consensus 69 ~I~~yL~~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~l~~le~ 137 (219)
-|-+||.+... .....-+....++++.+.+.+.+..-=. .......+....+...+.+||+
T Consensus 17 ~i~dYL~~E~~--------~evg~~~Ae~fleFis~elGpyfYNQGi~da~a~i~ekl~d~te~l~~LEk 78 (82)
T COG5460 17 RIRDYLTRETE--------TEVGKFDAEFFLEFISGELGPYFYNQGIKDARAVIEEKLADMTEELFALEK 78 (82)
T ss_pred HHHHHHHHHHH--------HHHHHhhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36677766555 2344555666778888777654322111 1122334444445555555554
Done!