BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027728
         (219 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2LJW|A Chain A, Solution Nmr Structure Of Alr2454 Protein From Nostoc Sp.
           Strain Pcc 7120, Northeast Structural Genomics
           Consortium Target Nsr264
          Length = 110

 Score = 93.2 bits (230), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 50/107 (46%), Positives = 68/107 (63%), Gaps = 6/107 (5%)

Query: 111 FSGLDLATLIRKKYGRSYDVQLIKKFMGRNLLALNVMWKYMEQRSFPLTEEEYILRLDDV 170
            +G +L  L+  K+G SYDVQ  ++  G+  + L VMWKY+EQ SFP+ E EY   LD V
Sbjct: 1   MTGQELRQLLLDKWGYSYDVQF-RRTQGK--IFLQVMWKYLEQASFPMNETEYQEHLDSV 57

Query: 171 ANTLKCWGAVSHIRNSLAKLKERPRIGKAVSIFIDMDESGGRANEWI 217
           AN L   G    ++  + + KERPR+GKAVSI +D+   G RA+EWI
Sbjct: 58  ANYLHALGGAVQVKTFITQTKERPRLGKAVSIPLDL---GERASEWI 101


>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
           Hb8
 pdb|1VEF|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
           Hb8
 pdb|1WKG|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
           Hb8
 pdb|1WKG|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
           Hb8
 pdb|1WKH|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
           Hb8
 pdb|1WKH|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
           Hb8
          Length = 395

 Score = 30.4 bits (67), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 93  SELLRENLERIVGVDDSTFSGLDLATLIRKKYGRSYDVQLIKKFMGRNLLALNVMWKYME 152
           + +L   L R+  V+  T +        R   GR   V  ++ F GR + +L+V W+   
Sbjct: 97  TAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKY 156

Query: 153 QRSF-PLTEEEYILRLDDV 170
           +  F PL E    +  +DV
Sbjct: 157 REPFLPLVEPVEFIPYNDV 175


>pdb|1AOR|A Chain A, Structure Of A Hyperthermophilic Tungstopterin Enzyme,
           Aldehyde Ferredoxin Oxidoreductase
 pdb|1AOR|B Chain B, Structure Of A Hyperthermophilic Tungstopterin Enzyme,
           Aldehyde Ferredoxin Oxidoreductase
          Length = 605

 Score = 28.9 bits (63), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 10/84 (11%)

Query: 128 YDVQLIKKFMGRNLLALNVMWKYMEQRSFPLTEEEYILRLDDVANTLKCWGAVSHIRNSL 187
           YD +L KK++G   LA+ ++ K M+    PL+ E    +L   A  L    A +  R ++
Sbjct: 23  YDEELAKKWLGSRGLAIYLLLKEMDPTVDPLSPEN---KLIIAAGPLTGTSAPTGGRYNV 79

Query: 188 AKLKERPRIGKAVSIFIDMDESGG 211
             + + P  G     FI M  SGG
Sbjct: 80  --VTKSPLTG-----FITMANSGG 96


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,526,681
Number of Sequences: 62578
Number of extensions: 242266
Number of successful extensions: 535
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 530
Number of HSP's gapped (non-prelim): 5
length of query: 219
length of database: 14,973,337
effective HSP length: 95
effective length of query: 124
effective length of database: 9,028,427
effective search space: 1119524948
effective search space used: 1119524948
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)