BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027728
         (219 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O84462|TARP_CHLTR Translocated actin-recruiting phosphoprotein OS=Chlamydia
           trachomatis (strain D/UW-3/Cx) GN=tarP PE=3 SV=1
          Length = 1005

 Score = 36.2 bits (82), Expect = 0.19,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 43/95 (45%), Gaps = 15/95 (15%)

Query: 47  SSHDKHISGC------GPIFCSAVDDG------NDPDDGSGDDTSNKKESPKDEN-GVNS 93
           S+ D  +SG        P   +AV +G      +D D G GDD S+   S  DE+ GV+S
Sbjct: 672 SAQDTKLSGNTGAGDDDPTTTAAVGNGAEEITLSDTDSGIGDDVSDTASSSGDESGGVSS 731

Query: 94  ELLRENLERIVGVDDSTFSGLDLATLIRKKYGRSY 128
                N    VG D    SGLD+   +RK   + Y
Sbjct: 732 PSSESNKNTAVGNDGP--SGLDILAAVRKHLDKVY 764


>sp|B2RMK4|DXS_PORG3 1-deoxy-D-xylulose-5-phosphate synthase OS=Porphyromonas gingivalis
           (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=dxs PE=3
           SV=1
          Length = 634

 Score = 32.7 bits (73), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 69  DPDDGSGDDTSNKKESPKDENGVNSEL--LRENLERIVGVDDSTFSGLDLATLIRKKYGR 126
           D   G      NK E PK ++     L  L +  ERIVGV  +  +G  +  L++K   R
Sbjct: 309 DIKSGERKKGENKPEPPKFQDVFGHTLVELADRDERIVGVTPAMPTGCSMTFLMKKYPNR 368

Query: 127 SYDVQL 132
           +YDV +
Sbjct: 369 AYDVGI 374


>sp|Q7MSZ3|DXS_PORGI 1-deoxy-D-xylulose-5-phosphate synthase OS=Porphyromonas gingivalis
           (strain ATCC BAA-308 / W83) GN=dxs PE=3 SV=1
          Length = 634

 Score = 32.3 bits (72), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 69  DPDDGSGDDTSNKKESPKDENGVNSEL--LRENLERIVGVDDSTFSGLDLATLIRKKYGR 126
           D   G      NK E PK ++     L  L +  ER+VGV  +  +G  +  L++K   R
Sbjct: 309 DIKSGERKKGENKPEPPKFQDVFGHTLVELADRDERVVGVTPAMPTGCSMTFLMKKYPNR 368

Query: 127 SYDVQL 132
           +YDV +
Sbjct: 369 AYDVGI 374


>sp|Q9FJH6|AB1F_ARATH ABC transporter F family member 1 OS=Arabidopsis thaliana GN=ABCF1
           PE=1 SV=1
          Length = 595

 Score = 31.6 bits (70), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 12/112 (10%)

Query: 110 TFSGLDLA--TLIRKKYGRSYDVQLIKKFMGRNLLALNVMWKYMEQRSFPLTEEEYILRL 167
           TF G DL   +++   YGR Y +      +G N    + +   + +R  P+ ++  I  L
Sbjct: 77  TFHGYDLIVDSMLELNYGRRYGL------LGLNGCGKSTLLTAIGRREIPIPDQMDIYHL 130

Query: 168 DDVANTLKCWGAVSHIRNSLAKLKERPRIGKAVSIFIDMDESGGRANEWIYK 219
                       +S +   ++  +ER R+ K V I +  D+ GG   + IY+
Sbjct: 131 SHEIEATD----MSSLEAVVSCDEERLRLEKEVEILVQQDDGGGERLQSIYE 178


>sp|Q6DFX2|ANTR2_MOUSE Anthrax toxin receptor 2 OS=Mus musculus GN=Antxr2 PE=2 SV=1
          Length = 487

 Score = 30.8 bits (68), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 186 SLAKLKERPRIGKAVSIFIDMDESGGRANEWI 217
           SL + +E+P   KA  ++  +D+SG  AN WI
Sbjct: 29  SLLQAQEQPSCKKAFDLYFVLDKSGSVANNWI 60


>sp|P44224|VG28_HAEIN Mu-like prophage FluMu protein gp28 OS=Haemophilus influenzae
           (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1500
           PE=4 SV=1
          Length = 508

 Score = 30.4 bits (67), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9   QFNWSVGVEEHHLHRARFNKIIPYSRYFGSNFPYKGLFSSHDKHISGCGPIFC 61
           QFN + G  +  L       I+ Y  YF S F  K L SS+ K++ G   + C
Sbjct: 87  QFNRAAGQIQEELFNDEDKDILTYVIYFASGFKIKAL-SSNPKNLRGMQGVVC 138


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.137    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,049,694
Number of Sequences: 539616
Number of extensions: 3952668
Number of successful extensions: 12282
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 12184
Number of HSP's gapped (non-prelim): 105
length of query: 219
length of database: 191,569,459
effective HSP length: 113
effective length of query: 106
effective length of database: 130,592,851
effective search space: 13842842206
effective search space used: 13842842206
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)