Query 027728
Match_columns 219
No_of_seqs 74 out of 76
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 14:17:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027728.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027728hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11267 DUF3067: Protein of u 100.0 1.1E-55 2.3E-60 345.1 9.0 99 113-217 1-99 (99)
2 PF10820 DUF2543: Protein of u 73.0 2.5 5.5E-05 32.8 1.9 15 165-179 66-80 (81)
3 PRK00945 acetyl-CoA decarbonyl 50.3 12 0.00026 32.1 2.1 21 154-174 150-171 (171)
4 PF13592 HTH_33: Winged helix- 44.2 19 0.00042 25.0 2.1 27 109-135 3-29 (60)
5 TIGR00315 cdhB CO dehydrogenas 44.0 17 0.00037 30.8 2.1 19 154-172 142-161 (162)
6 PF03732 Retrotrans_gag: Retro 42.0 78 0.0017 21.8 4.9 69 111-192 27-96 (96)
7 TIGR03853 matur_matur probable 34.9 67 0.0014 24.9 3.9 33 91-123 18-57 (77)
8 PF14384 DUF4415: Domain of un 32.1 28 0.0006 24.9 1.3 17 191-207 21-38 (62)
9 PF15169 DUF4564: Domain of un 29.7 39 0.00085 29.9 2.1 70 110-182 79-165 (187)
10 COG1880 CdhB CO dehydrogenase/ 29.0 44 0.00095 29.4 2.3 19 154-172 150-169 (170)
11 PF13204 DUF4038: Protein of u 28.7 88 0.0019 28.0 4.2 44 136-179 41-102 (289)
12 PF14624 Vwaint: VWA / Hh pro 28.7 48 0.001 25.2 2.2 13 120-132 24-36 (80)
13 PF04787 Pox_H7: Late protein 28.1 69 0.0015 27.5 3.2 70 109-179 15-90 (147)
14 PF06252 DUF1018: Protein of u 26.2 64 0.0014 25.2 2.6 35 91-125 1-38 (119)
15 PF10678 DUF2492: Protein of u 26.0 1.3E+02 0.0027 23.3 4.1 33 91-123 20-59 (78)
16 PF14786 Death_2: Tube Death d 25.1 32 0.0007 29.2 0.8 42 164-205 94-137 (137)
17 cd00454 Trunc_globin Truncated 24.8 1.8E+02 0.004 21.6 4.7 33 155-187 70-102 (116)
18 PF10095 DUF2333: Uncharacteri 23.2 78 0.0017 30.3 3.0 37 156-192 148-195 (336)
19 PF09153 DUF1938: Domain of un 22.9 2.1E+02 0.0045 22.8 4.8 43 137-179 9-53 (86)
20 cd07358 harmonin_N_like_1 Doma 22.6 93 0.002 24.3 2.8 38 151-188 8-46 (78)
21 TIGR00545 lipoyltrans lipoyltr 22.0 1.6E+02 0.0036 27.1 4.8 54 127-181 62-118 (324)
22 PF00150 Cellulase: Cellulase 21.7 1.7E+02 0.0038 24.0 4.5 42 137-178 33-75 (281)
23 KOG0182 20S proteasome, regula 21.0 88 0.0019 28.8 2.8 68 97-172 176-244 (246)
24 COG1206 Gid NAD(FAD)-utilizing 20.3 52 0.0011 32.4 1.2 81 89-181 137-222 (439)
No 1
>PF11267 DUF3067: Protein of unknown function (DUF3067); InterPro: IPR021420 This family of proteins has no known function. ; PDB: 2LJW_A.
Probab=100.00 E-value=1.1e-55 Score=345.07 Aligned_cols=99 Identities=58% Similarity=1.026 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHhCccccceeEEEecCCceEEEeeeehhhcccCCCCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCC
Q 027728 113 GLDLATLIRKKYGRSYDVQLIKKFMGRNLLALNVMWKYMEQRSFPLTEEEYILRLDDVANTLKCWGAVSHIRNSLAKLKE 192 (219)
Q Consensus 113 G~EL~~LL~~KWG~sYDvqL~r~~~Gk~~lyLqVMWkyLEQrSFPLtE~EYlehLdaVAe~Ln~wG~~d~Vr~~L~~T~e 192 (219)
|+||++||++|||+||||||+|+ +++|||||||+||||+||||||+||++||++||++||+||++++||+||++|++
T Consensus 1 g~eL~~ll~~KwG~sYDvql~r~---~~~v~lqVMW~yLeQ~SFPltE~eY~~hL~~va~~L~~wG~~~~Vr~~l~~t~~ 77 (99)
T PF11267_consen 1 GQELRDLLREKWGRSYDVQLRRR---RGRVYLQVMWKYLEQRSFPLTEEEYLEHLDAVAEYLNAWGQADQVRAFLEETRE 77 (99)
T ss_dssp HHHHHHHHHHHHSS-EEEEEEEE---TTEEEEEEEEEETTSTT-SS-HHHHHHHHHHHHHHHHHHS-HHHHHHHHHH---
T ss_pred ChHHHHHHHHHhCCcceeEEEEE---cCEEEEEEehhhccCCCcCCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHhCCC
Confidence 78999999999999999999999 778999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEeeecCCCCccccccc
Q 027728 193 RPRIGKAVSIFIDMDESGGRANEWI 217 (219)
Q Consensus 193 RPRlGkAVSIpLdLd~~g~R~sEWi 217 (219)
|||+|||||||||| |+|++|||
T Consensus 78 rPRlGkAVsipL~l---~~r~~Ewl 99 (99)
T PF11267_consen 78 RPRLGKAVSIPLDL---GERASEWL 99 (99)
T ss_dssp --BTTB-EEEEE-----HHHHHHHH
T ss_pred CCCCCeEEEEeecC---CchhhhcC
Confidence 99999999999999 99999997
No 2
>PF10820 DUF2543: Protein of unknown function (DUF2543); InterPro: IPR020251 This entry contains proteins with no known function.
Probab=73.04 E-value=2.5 Score=32.84 Aligned_cols=15 Identities=53% Similarity=1.006 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhcCc
Q 027728 165 LRLDDVANTLKCWGA 179 (219)
Q Consensus 165 ehLdaVAe~Ln~wG~ 179 (219)
.++|+||+.||.||.
T Consensus 66 ~rID~IA~fLNqWGN 80 (81)
T PF10820_consen 66 QRIDDIANFLNQWGN 80 (81)
T ss_pred HHHHHHHHHHHHhcc
Confidence 479999999999995
No 3
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=50.29 E-value=12 Score=32.12 Aligned_cols=21 Identities=48% Similarity=0.858 Sum_probs=18.4
Q ss_pred cCCC-CCHHHHHHHHHHHHHHH
Q 027728 154 RSFP-LTEEEYILRLDDVANTL 174 (219)
Q Consensus 154 rSFP-LtE~EYlehLdaVAe~L 174 (219)
-||| |++++|++-|+++.+.|
T Consensus 150 ~s~~~~~~~~~~~~l~~li~~~ 171 (171)
T PRK00945 150 MSFPNLSKEEYLEYLDELIDNL 171 (171)
T ss_pred eecCCCCHHHHHHHHHHHHhhC
Confidence 3899 99999999999998764
No 4
>PF13592 HTH_33: Winged helix-turn helix
Probab=44.25 E-value=19 Score=25.02 Aligned_cols=27 Identities=15% Similarity=0.370 Sum_probs=22.0
Q ss_pred CcccHHHHHHHHHHHhCccccceeEEE
Q 027728 109 STFSGLDLATLIRKKYGRSYDVQLIKK 135 (219)
Q Consensus 109 ~~mtG~EL~~LL~~KWG~sYDvqL~r~ 135 (219)
...|..+|+++|.++||..|..+=+.+
T Consensus 3 ~~wt~~~i~~~I~~~fgv~ys~~~v~~ 29 (60)
T PF13592_consen 3 GRWTLKEIAAYIEEEFGVKYSPSGVYR 29 (60)
T ss_pred CcccHHHHHHHHHHHHCCEEcHHHHHH
Confidence 357899999999999999998764443
No 5
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=44.02 E-value=17 Score=30.82 Aligned_cols=19 Identities=37% Similarity=0.655 Sum_probs=16.3
Q ss_pred cCCC-CCHHHHHHHHHHHHH
Q 027728 154 RSFP-LTEEEYILRLDDVAN 172 (219)
Q Consensus 154 rSFP-LtE~EYlehLdaVAe 172 (219)
-||| |+++||++-|+.|.+
T Consensus 142 ~Sf~n~~~~~~~~~l~~~~~ 161 (162)
T TIGR00315 142 YSFPNLSKDEYLDYLRKLLA 161 (162)
T ss_pred eeccccCHHHHHHHHHHHhc
Confidence 3899 999999999998753
No 6
>PF03732 Retrotrans_gag: Retrotransposon gag protein ; InterPro: IPR005162 Transposable elements (TEs) promote various chromosomal rearrangements more efficiently, and often more specifically, than other cellular processes. Retrotransposons are structurally similar to retroviruses and are bounded by long terminal repeats. This entry represents eukaryotic Gag or capsid-related retrotranspon-related proteins. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved.
Probab=42.04 E-value=78 Score=21.84 Aligned_cols=69 Identities=12% Similarity=0.129 Sum_probs=53.0
Q ss_pred ccHHHHHHHHHHHhCccccceeEEEecCCceEEEeeeehhhcccCCCCCHHHHHHHHHHHHHHHHh-cCchHHHHHHHHh
Q 027728 111 FSGLDLATLIRKKYGRSYDVQLIKKFMGRNLLALNVMWKYMEQRSFPLTEEEYILRLDDVANTLKC-WGAVSHIRNSLAK 189 (219)
Q Consensus 111 mtG~EL~~LL~~KWG~sYDvqL~r~~~Gk~~lyLqVMWkyLEQrSFPLtE~EYlehLdaVAe~Ln~-wG~~d~Vr~~L~~ 189 (219)
-|=.+|...+.++++-+......+. + +.-|-| =-.|=.+|..++..++..+.. +.-...|..|+.+
T Consensus 27 ~~W~~~~~~~~~~f~~~~~~~~~~~---~--------l~~l~Q--~~esv~~y~~rf~~l~~~~~~~~~e~~~v~~f~~G 93 (96)
T PF03732_consen 27 ITWEEFKDAFRKRFFPPDRKEQARQ---E--------LNSLRQ--GNESVREYVNRFRELARRAPPPMDEEMLVERFIRG 93 (96)
T ss_pred CCHHHHHHHHHHHHhhhhccccchh---h--------hhhhhc--cCCcHHHHHHHHHHHHHHCCCCcCHHHHHHHHHHC
Confidence 4567999999999998765543332 1 234555 237889999999999999995 9999999999988
Q ss_pred cCC
Q 027728 190 LKE 192 (219)
Q Consensus 190 T~e 192 (219)
.++
T Consensus 94 L~~ 96 (96)
T PF03732_consen 94 LRP 96 (96)
T ss_pred CCC
Confidence 763
No 7
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=34.85 E-value=67 Score=24.88 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=24.3
Q ss_pred cChHHHHHHHHHHhcCCC-------CcccHHHHHHHHHHH
Q 027728 91 VNSELLRENLERIVGVDD-------STFSGLDLATLIRKK 123 (219)
Q Consensus 91 ~~s~~~r~~l~r~~g~~~-------~~mtG~EL~~LL~~K 123 (219)
++.+.++.-++..+|.+. +.||-.+|.++|.+|
T Consensus 18 ~t~~~L~~~i~~~FG~~arFhTCSa~~m~a~~Li~FL~~k 57 (77)
T TIGR03853 18 YTRESLKAAIEQKFGEDARFHTCSAEGMTADELLQFLLKK 57 (77)
T ss_pred cCHHHHHHHHHHHhCCCceEeecccccCCHHHHHHHHHHC
Confidence 344567777788888874 678888888888765
No 8
>PF14384 DUF4415: Domain of unknown function (DUF4415)
Probab=32.12 E-value=28 Score=24.90 Aligned_cols=17 Identities=35% Similarity=0.513 Sum_probs=11.2
Q ss_pred CCCC-CCCceEEEeeecC
Q 027728 191 KERP-RIGKAVSIFIDMD 207 (219)
Q Consensus 191 ~eRP-RlGkAVSIpLdLd 207 (219)
+.+| .-.+.|||+||-|
T Consensus 21 ~~~~~~~k~~Vtirld~d 38 (62)
T PF14384_consen 21 RGPPKKPKKQVTIRLDPD 38 (62)
T ss_pred CCCCCCCceeEEEEeCHH
Confidence 3344 3456999999863
No 9
>PF15169 DUF4564: Domain of unknown function (DUF4564)
Probab=29.74 E-value=39 Score=29.94 Aligned_cols=70 Identities=19% Similarity=0.319 Sum_probs=43.4
Q ss_pred cccHHHHHHHHHHHhCcccc-------------ceeEEE-ecCCceEEEeeeehhhcccCCCCCHHHHH---HHHHHHHH
Q 027728 110 TFSGLDLATLIRKKYGRSYD-------------VQLIKK-FMGRNLLALNVMWKYMEQRSFPLTEEEYI---LRLDDVAN 172 (219)
Q Consensus 110 ~mtG~EL~~LL~~KWG~sYD-------------vqL~r~-~~Gk~~lyLqVMWkyLEQrSFPLtE~EYl---ehLdaVAe 172 (219)
.|...-|.+.++..|-.-++ |+=.+. ++|++.. ||=.|----|.|||+..|+ ...++||.
T Consensus 79 ~lk~~nl~~~il~~~~~g~~~vV~~L~~i~~v~Veee~vry~g~g~~---v~L~f~tG~siPLTqsa~~G~~~dve~IA~ 155 (187)
T PF15169_consen 79 TLKYFNLYEKILTLWKQGHEQVVVDLSEIRDVNVEEEKVRYFGKGYL---VVLRFATGFSIPLTQSATLGDRSDVEAIAK 155 (187)
T ss_pred EEEeeeHHHHHHHHhhcCCCeEEEEhhHcceEEEEEEeeccCCcceE---EEEEccCCcceeccceEEecCchHHHHHHH
Confidence 45555556666655544322 222233 6777653 3445555669999999998 66788998
Q ss_pred HHHhcCchHH
Q 027728 173 TLKCWGAVSH 182 (219)
Q Consensus 173 ~Ln~wG~~d~ 182 (219)
.|+.|=..+.
T Consensus 156 ~I~~FL~l~~ 165 (187)
T PF15169_consen 156 LINKFLELNP 165 (187)
T ss_pred HHHHHHhhcc
Confidence 8887644433
No 10
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=29.03 E-value=44 Score=29.36 Aligned_cols=19 Identities=42% Similarity=0.873 Sum_probs=16.7
Q ss_pred cCCC-CCHHHHHHHHHHHHH
Q 027728 154 RSFP-LTEEEYILRLDDVAN 172 (219)
Q Consensus 154 rSFP-LtE~EYlehLdaVAe 172 (219)
-||| |+..||+.-|+++.+
T Consensus 150 ~SFpNl~kde~~~~L~ell~ 169 (170)
T COG1880 150 YSFPNLSKDEYLAYLDELLD 169 (170)
T ss_pred ccCCCcCHHHHHHHHHHHhc
Confidence 4899 999999999998763
No 11
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=28.70 E-value=88 Score=28.03 Aligned_cols=44 Identities=23% Similarity=0.298 Sum_probs=25.8
Q ss_pred ecCCceEEEeeeehhhcc--------cCCCC----------CHHHHHHHHHHHHHHHHhcCc
Q 027728 136 FMGRNLLALNVMWKYMEQ--------RSFPL----------TEEEYILRLDDVANTLKCWGA 179 (219)
Q Consensus 136 ~~Gk~~lyLqVMWkyLEQ--------rSFPL----------tE~EYlehLdaVAe~Ln~wG~ 179 (219)
-.|.+.|-++|..++-+. ..|+= =..+|++||+.+++.|++.|-
T Consensus 41 ~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi 102 (289)
T PF13204_consen 41 EQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGI 102 (289)
T ss_dssp HTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-
T ss_pred HCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCC
Confidence 367788888887776533 33322 157899999999999988764
No 12
>PF14624 Vwaint: VWA / Hh protein intein-like
Probab=28.69 E-value=48 Score=25.23 Aligned_cols=13 Identities=31% Similarity=0.677 Sum_probs=10.3
Q ss_pred HHHHhCcccccee
Q 027728 120 IRKKYGRSYDVQL 132 (219)
Q Consensus 120 L~~KWG~sYDvqL 132 (219)
.++|||+.|=+.+
T Consensus 24 ~y~~~Gr~YllS~ 36 (80)
T PF14624_consen 24 YYERWGRHYLLSL 36 (80)
T ss_pred HHHHhhHHHHHHH
Confidence 3899999986654
No 13
>PF04787 Pox_H7: Late protein H7; InterPro: IPR006872 This is a family of poxvirus late H7 proteins.
Probab=28.09 E-value=69 Score=27.54 Aligned_cols=70 Identities=16% Similarity=0.276 Sum_probs=52.4
Q ss_pred CcccHHHHHHHHHHHhCccccceeEEEecCCceEEEeeee------hhhcccCCCCCHHHHHHHHHHHHHHHHhcCc
Q 027728 109 STFSGLDLATLIRKKYGRSYDVQLIKKFMGRNLLALNVMW------KYMEQRSFPLTEEEYILRLDDVANTLKCWGA 179 (219)
Q Consensus 109 ~~mtG~EL~~LL~~KWG~sYDvqL~r~~~Gk~~lyLqVMW------kyLEQrSFPLtE~EYlehLdaVAe~Ln~wG~ 179 (219)
+.|+-.|+.-|+..=.|+..-=.+.-. -..+.+++-.-. .||.+.-=|++.+||.+|-.+||.-|+.+.-
T Consensus 15 g~Lst~DI~~l~~~L~~~~P~~tifsi-d~~g~f~iDF~Yd~~~AS~YL~~~~~~i~pde~~~~~~~IA~eLT~~di 90 (147)
T PF04787_consen 15 GELSTKDIMVLKRHLLNKHPNDTIFSI-DEDGKFFIDFEYDDCLASDYLNMKTRPITPDEYKKYSSAIAKELTNYDI 90 (147)
T ss_pred ccccHHHHHHHHHHHhcCCCcceeeeE-cCCCCEEEEeeeCCchHhhhhcCCCccCCHHHHHHHHHHHHHHHHHHHH
Confidence 478888999999888887764443322 123445554433 5899999999999999999999999998753
No 14
>PF06252 DUF1018: Protein of unknown function (DUF1018); InterPro: IPR009363 This family consists of several bacterial and phage proteins, related to Gp16 of phage Mu, of unknown function.
Probab=26.17 E-value=64 Score=25.17 Aligned_cols=35 Identities=23% Similarity=0.518 Sum_probs=28.0
Q ss_pred cChHHHHHHHHHHhcCCCC-cccHHHHHHHHH--HHhC
Q 027728 91 VNSELLRENLERIVGVDDS-TFSGLDLATLIR--KKYG 125 (219)
Q Consensus 91 ~~s~~~r~~l~r~~g~~~~-~mtG~EL~~LL~--~KWG 125 (219)
|+.|..|.-|.+.+|++++ .||-.||..+|- ++-|
T Consensus 1 lddd~YR~~L~~~~Gk~S~k~lt~~el~~vl~~l~~~G 38 (119)
T PF06252_consen 1 LDDDTYRALLQRVTGKSSSKDLTEAELEKVLDELKRLG 38 (119)
T ss_pred CCHHHHHHHHHHHhChhhHHHCCHHHHHHHHHHHHHcc
Confidence 3557789999999999964 799999998874 3444
No 15
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=26.04 E-value=1.3e+02 Score=23.30 Aligned_cols=33 Identities=15% Similarity=0.294 Sum_probs=22.8
Q ss_pred cChHHHHHHHHHHhcCCC-------CcccHHHHHHHHHHH
Q 027728 91 VNSELLRENLERIVGVDD-------STFSGLDLATLIRKK 123 (219)
Q Consensus 91 ~~s~~~r~~l~r~~g~~~-------~~mtG~EL~~LL~~K 123 (219)
++-+.+...++..+|.+. +.||-.||.+.|.+|
T Consensus 20 ~t~~~L~~ai~~~FG~~arFhTCSae~m~a~eLv~FL~~r 59 (78)
T PF10678_consen 20 YTKEELKAAIIEKFGEDARFHTCSAEGMTADELVDFLEER 59 (78)
T ss_pred cCHHHHHHHHHHHhCCCceEEecCCCCCCHHHHHHHHHHc
Confidence 344566666777788774 567888888777665
No 16
>PF14786 Death_2: Tube Death domain; PDB: 1D2Z_B.
Probab=25.08 E-value=32 Score=29.20 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhcCchHHHH-HHHH-hcCCCCCCCceEEEeee
Q 027728 164 ILRLDDVANTLKCWGAVSHIR-NSLA-KLKERPRIGKAVSIFID 205 (219)
Q Consensus 164 lehLdaVAe~Ln~wG~~d~Vr-~~L~-~T~eRPRlGkAVSIpLd 205 (219)
+.||-.+.--.+-+.+||+|- ++|. ..++||.-|-|-.|-+|
T Consensus 94 l~~Ll~LLvkael~rAADyva~~~Lke~~p~RP~~GPaA~i~~~ 137 (137)
T PF14786_consen 94 LGHLLQLLVKAELFRAADYVAVDILKEEPPARPDDGPAAPIDLD 137 (137)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHTT--------SSSTTS---B-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Confidence 456666666666777888888 6664 67899999998877654
No 17
>cd00454 Trunc_globin Truncated hemoglobins (trHbs) are a family of oxygen-binding heme proteins found in cyanobacteria, eubacteria, unicellular eukaryotes, and plants. The truncated hemoglobins have a characteristic two-over-two alpha helical folding pattern that is distinct from the three-over-three pattern found in other globins. A subset of these have been demonstrated to form homodimers.
Probab=24.76 E-value=1.8e+02 Score=21.59 Aligned_cols=33 Identities=30% Similarity=0.536 Sum_probs=28.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCchHHHHHHH
Q 027728 155 SFPLTEEEYILRLDDVANTLKCWGAVSHIRNSL 187 (219)
Q Consensus 155 SFPLtE~EYlehLdaVAe~Ln~wG~~d~Vr~~L 187 (219)
.+++|+++|-.=|+.+.+.|...|..+.+++.+
T Consensus 70 ~~~I~~~~f~~~l~~l~~al~~~~~~~~~~~~~ 102 (116)
T cd00454 70 PFPITEEEFDAWLELLRDALDELGVPAELADAL 102 (116)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 579999999999999999999999996666554
No 18
>PF10095 DUF2333: Uncharacterized protein conserved in bacteria (DUF2333); InterPro: IPR016936 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.18 E-value=78 Score=30.33 Aligned_cols=37 Identities=19% Similarity=0.315 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCc-----------hHHHHHHHHhcCC
Q 027728 156 FPLTEEEYILRLDDVANTLKCWGA-----------VSHIRNSLAKLKE 192 (219)
Q Consensus 156 FPLtE~EYlehLdaVAe~Ln~wG~-----------~d~Vr~~L~~T~e 192 (219)
||=||.+|.+-++++-.|+.++.. +|..+.||....+
T Consensus 148 ~PSaEseYr~gi~~L~~Y~~rL~~~~~~~A~FyaRaDNL~~~L~~v~~ 195 (336)
T PF10095_consen 148 FPSAESEYREGIKALRRYNARLADPNNGDAQFYARADNLRAWLKRVEK 195 (336)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhCCCCCCCceeccCcchHHHHHHHHHH
Confidence 799999999999999999999982 6788999964443
No 19
>PF09153 DUF1938: Domain of unknown function (DUF1938); InterPro: IPR015236 This domain, which is predominantly found in the archaeal protein O6-alkylguanine-DNA alkyltransferase, adopts a secondary structure consisting of a three stranded antiparallel beta-sheet and three alpha helices. The exact function has not, as yet, been defined, though it has been postulated that this domain may confer thermostability to the protein []. ; GO: 0005737 cytoplasm; PDB: 1MGT_A.
Probab=22.87 E-value=2.1e+02 Score=22.79 Aligned_cols=43 Identities=26% Similarity=0.426 Sum_probs=34.1
Q ss_pred cCCceEEEeeeehhhccc-CCCCCHHHHHH-HHHHHHHHHHhcCc
Q 027728 137 MGRNLLALNVMWKYMEQR-SFPLTEEEYIL-RLDDVANTLKCWGA 179 (219)
Q Consensus 137 ~Gk~~lyLqVMWkyLEQr-SFPLtE~EYle-hLdaVAe~Ln~wG~ 179 (219)
.+.+-|+.-|.|.--=|- +|-|+..||++ ++..+++.|+.=|.
T Consensus 9 i~~rei~I~vi~e~kIqGItfslDg~efl~eri~~L~~~L~kRgv 53 (86)
T PF09153_consen 9 IGGREIWIAVIFEEKIQGITFSLDGEEFLRERISRLIEFLKKRGV 53 (86)
T ss_dssp ETTEEEEEEEEESSSEEEEEEESSHHHHHH-HHHHHHHHHHHTT-
T ss_pred eCCeEEEEEEEEcCceeeEEEEeccHHHHHHHHHHHHHHHHhcCc
Confidence 345678888999655554 69999999999 99999999987654
No 20
>cd07358 harmonin_N_like_1 Domains similar to the N-terminal protein-binding module of harmonin. This domain is a putative protein-binding module based on its sequence similarity to the N-terminal domain of harmonin. Harmonin (not belonging to this group) is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein, which organizes the Usher protein network of the inner ear and the retina. This domain is also related to domains found in several other PDZ domain-containing scaffold proteins which organize supramolecular complexes. This subgroup is comprised of uncharacterized PDZ-containing proteins including a protein designated Bos taurus PDZ containing 7 which has an N-terminal PDZ domain and a C-terminal harmonin_N_like domain; however the characterized human PDZ containing 7 containing two PDZ domains does not appear to contain a harmonin_N_like domain.
Probab=22.59 E-value=93 Score=24.34 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=30.7
Q ss_pred hcccC-CCCCHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Q 027728 151 MEQRS-FPLTEEEYILRLDDVANTLKCWGAVSHIRNSLA 188 (219)
Q Consensus 151 LEQrS-FPLtE~EYlehLdaVAe~Ln~wG~~d~Vr~~L~ 188 (219)
+|++. -+|||.|+..-+--+.+|...||.-+-|+.-|+
T Consensus 8 ie~~a~~llte~e~~t~~~~~~~Y~~~G~VE~LV~~Ll~ 46 (78)
T cd07358 8 IQALARRLLTDDEALAVLRHCSRYVHEGGVEDLVRPLLA 46 (78)
T ss_pred HHHHHHhhcccHHHHHHHHhHHHHhcCCCHHHHHHHHHH
Confidence 34444 459999999999999999999888888887764
No 21
>TIGR00545 lipoyltrans lipoyltransferase and lipoate-protein ligase. One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus.
Probab=22.05 E-value=1.6e+02 Score=27.05 Aligned_cols=54 Identities=17% Similarity=0.292 Sum_probs=40.1
Q ss_pred cccceeEEEecCCceEEE---eeeehhhcccCCCCCHHHHHHHHHHHHHHHHhcCchH
Q 027728 127 SYDVQLIKKFMGRNLLAL---NVMWKYMEQRSFPLTEEEYILRLDDVANTLKCWGAVS 181 (219)
Q Consensus 127 sYDvqL~r~~~Gk~~lyL---qVMWkyLEQrSFPLtE~EYlehLdaVAe~Ln~wG~~d 181 (219)
...+.++||.-|.+.||. |+.|-++--++-+ .-..|..-++.|++.|+.+|...
T Consensus 62 ~~gi~vvRR~sGGGaVyhD~g~l~~s~i~~~~~~-~~~~~~~~~~~i~~aL~~lGi~a 118 (324)
T TIGR00545 62 EDNVNLFRRFSGGGAVFHDLGNICFSFITPKDGK-EFENAKIFTRNVIKALNSLGVEA 118 (324)
T ss_pred HcCCeEEEECCCCceEEEcCCceEEEEEEcCCcc-chhhHHHHHHHHHHHHHHhCCCe
Confidence 457899999889999995 6777777554321 12468778889999999999643
No 22
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=21.74 E-value=1.7e+02 Score=24.04 Aligned_cols=42 Identities=24% Similarity=0.509 Sum_probs=28.2
Q ss_pred cCCceEEEeeeehhhcccCCC-CCHHHHHHHHHHHHHHHHhcC
Q 027728 137 MGRNLLALNVMWKYMEQRSFP-LTEEEYILRLDDVANTLKCWG 178 (219)
Q Consensus 137 ~Gk~~lyLqVMWkyLEQrSFP-LtE~EYlehLdaVAe~Ln~wG 178 (219)
+|-+.|=+.|-|..+....-+ ...+.|+++|+.+++...+.|
T Consensus 33 ~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~g 75 (281)
T PF00150_consen 33 LGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYG 75 (281)
T ss_dssp TTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCC
Confidence 445555567778555532322 355699999999999987654
No 23
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=21.04 E-value=88 Score=28.84 Aligned_cols=68 Identities=18% Similarity=0.136 Sum_probs=40.5
Q ss_pred HHHHHHHhcCCCCcccHHHHHHHHHHHhCccccceeEEEecCCceEEEeeeehhhcccCCC-CCHHHHHHHHHHHHH
Q 027728 97 RENLERIVGVDDSTFSGLDLATLIRKKYGRSYDVQLIKKFMGRNLLALNVMWKYMEQRSFP-LTEEEYILRLDDVAN 172 (219)
Q Consensus 97 r~~l~r~~g~~~~~mtG~EL~~LL~~KWG~sYDvqL~r~~~Gk~~lyLqVMWkyLEQrSFP-LtE~EYlehLdaVAe 172 (219)
..-||..+-++-. +|=.|+.++-..----+--..+... . ++|=.--.+|..|. ||++|--+||++|||
T Consensus 176 tsfLEKk~Kk~~~-~t~~e~ve~ai~al~~sl~~Dfk~s---e----~EVgvv~~~~p~f~~Ls~~eie~hL~~IAE 244 (246)
T KOG0182|consen 176 TSFLEKKYKKDID-LTFEETVETAISALQSSLGIDFKSS---E----LEVGVVTVDNPEFRILSAEEIEEHLQAIAE 244 (246)
T ss_pred HHHHHHhhccCcc-chHHHHHHHHHHHHHHHHhcccCCc---c----eEEEEEEcCCcceeeccHHHHHHHHHHhhh
Confidence 3478888877632 5555555443333322322332221 1 34444455777665 999999999999997
No 24
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=20.25 E-value=52 Score=32.43 Aligned_cols=81 Identities=22% Similarity=0.271 Sum_probs=45.9
Q ss_pred cCcChHHHHHHHHHHhcCCCCcccHHHHHHHHHHHhCccccceeEEEecCCc-eEEEeeeehhhcccCCCCCHHHHHHHH
Q 027728 89 NGVNSELLRENLERIVGVDDSTFSGLDLATLIRKKYGRSYDVQLIKKFMGRN-LLALNVMWKYMEQRSFPLTEEEYILRL 167 (219)
Q Consensus 89 ~g~~s~~~r~~l~r~~g~~~~~mtG~EL~~LL~~KWG~sYDvqL~r~~~Gk~-~lyLqVMWkyLEQrSFPLtE~EYlehL 167 (219)
|-.+|+.+-+.+.+++|.| .|.=+|-+.=|+.+=-.-.|+-+.+-+++|+ .=|+| -|||++||..-.
T Consensus 137 GPLTs~~La~~i~~ltG~d--~l~FyDAaAPIi~~dSIdmd~~~~~sRYdKg~a~YiN----------CPmtkEey~~F~ 204 (439)
T COG1206 137 GPLTSDALAEKIKELTGED--YLYFYDAAAPIIEFDSIDMDKAYLKSRYDKGEADYIN----------CPMTKEEYLAFY 204 (439)
T ss_pred CCCCCHHHHHHHHHhhCCc--eEEeecccCceeeccccchHHHHhhhccccccchhhc----------CCCCHHHHHHHH
Confidence 5668888888999999888 2222222222222211111111111123333 34555 599999999999
Q ss_pred HHHHHH----HHhcCchH
Q 027728 168 DDVANT----LKCWGAVS 181 (219)
Q Consensus 168 daVAe~----Ln~wG~~d 181 (219)
+++.+- |+.|-...
T Consensus 205 eaL~~ae~~~~k~fEk~~ 222 (439)
T COG1206 205 EALIEAEKAPLKDFEKEK 222 (439)
T ss_pred HHHHhcccCChhhhcccc
Confidence 888763 56665543
Done!