Query 027728
Match_columns 219
No_of_seqs 74 out of 76
Neff 2.9
Searched_HMMs 29240
Date Tue Mar 26 00:30:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027728.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027728hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ljw_A ALR2454 protein; novel 100.0 9.5E-58 3.2E-62 361.0 10.5 102 111-218 1-102 (110)
2 3l55_A B-1,4-endoglucanase/cel 64.8 3.2 0.00011 36.5 2.4 41 137-178 64-104 (353)
3 3ndz_A Endoglucanase D; cellot 50.5 8.7 0.0003 33.0 2.7 39 139-178 56-96 (345)
4 1h1n_A Endo type cellulase ENG 49.2 12 0.0004 31.2 3.1 36 142-178 48-85 (305)
5 3vx7_B E2; ubiquitin conjugati 47.6 14 0.00046 30.4 3.2 27 158-184 7-33 (152)
6 3icg_A Endoglucanase D; cellul 40.0 13 0.00045 33.7 2.2 40 138-178 58-99 (515)
7 3aof_A Endoglucanase; glycosyl 35.9 20 0.00069 29.3 2.5 41 137-178 45-87 (317)
8 2fki_A Protein YJBR; NESG, GFT 29.6 40 0.0014 25.5 3.1 39 111-149 1-42 (126)
9 1q1v_A DEK protein; winged-hel 28.3 1.2E+02 0.0041 21.5 5.2 41 89-131 10-52 (70)
10 1ceo_A Cellulase CELC; glycosy 27.7 40 0.0014 27.9 3.0 41 137-178 40-82 (343)
11 2exv_A Cytochrome C-551; alpha 27.0 45 0.0015 21.6 2.6 22 146-177 60-81 (82)
12 1edg_A Endoglucanase A; family 25.7 30 0.001 29.6 2.0 41 137-178 73-114 (380)
13 3qho_A Endoglucanase, 458AA lo 25.1 27 0.00092 31.8 1.7 42 137-178 96-147 (458)
14 2ahq_A Sigma-54, RNA polymeras 25.0 90 0.0031 22.6 4.1 34 90-123 15-50 (76)
15 3kzs_A Glycosyl hydrolase fami 24.9 42 0.0014 31.3 2.9 42 137-178 64-120 (463)
16 2bmm_A Thermostable hemoglobin 23.5 1.3E+02 0.0043 21.8 4.8 33 155-187 75-107 (123)
17 2cks_A Endoglucanase E-5; carb 22.8 1.1E+02 0.0036 25.2 4.7 31 145-178 63-93 (306)
18 2kfp_A Pspto_3016 protein; alp 22.7 42 0.0014 25.5 2.1 38 111-148 1-45 (125)
19 3aq9_A Group 1 truncated hemog 22.7 1.2E+02 0.004 22.0 4.5 33 155-187 75-107 (121)
20 1dlw_A Hemoglobin; oxygen stor 22.5 1.5E+02 0.005 21.2 4.9 33 155-187 70-102 (116)
21 3dlm_A Histone-lysine N-methyl 22.3 71 0.0024 27.5 3.6 17 180-196 141-157 (213)
22 1cch_A Cytochrome C551; electr 22.1 60 0.002 20.9 2.5 22 146-177 60-81 (82)
23 1ayg_A Cytochrome C-552; elect 21.6 65 0.0022 21.0 2.6 22 146-177 58-79 (80)
24 2osx_A Endoglycoceramidase II; 21.3 45 0.0015 29.7 2.3 34 144-178 85-118 (481)
25 3ayr_A Endoglucanase; TIM barr 20.7 52 0.0018 28.2 2.5 39 139-178 76-116 (376)
No 1
>2ljw_A ALR2454 protein; novel fold, structural genomics, northeast structural genomi consortium, NESG, PSI-biology, protein structure initiative function; NMR {Nostoc SP}
Probab=100.00 E-value=9.5e-58 Score=361.03 Aligned_cols=102 Identities=48% Similarity=0.841 Sum_probs=99.8
Q ss_pred ccHHHHHHHHHHHhCccccceeEEEecCCceEEEeeeehhhcccCCCCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHhc
Q 027728 111 FSGLDLATLIRKKYGRSYDVQLIKKFMGRNLLALNVMWKYMEQRSFPLTEEEYILRLDDVANTLKCWGAVSHIRNSLAKL 190 (219)
Q Consensus 111 mtG~EL~~LL~~KWG~sYDvqL~r~~~Gk~~lyLqVMWkyLEQrSFPLtE~EYlehLdaVAe~Ln~wG~~d~Vr~~L~~T 190 (219)
|||+||++||++|||+||||||+|+ +++|||||||+||||+||||||+||++|||+||++||+||++++||+||++|
T Consensus 1 mtG~eL~~ll~~KWG~sYDvql~r~---~~~vylqVMW~yLeQ~SFPltE~eY~~hL~~va~~L~~wG~~~~Vr~~l~~t 77 (110)
T 2ljw_A 1 MTGQELRQLLLDKWGYSYDVQFRRT---QGKIFLQVMWKYLEQASFPMNETEYQEHLDSVANYLHALGGAVQVKTFITQT 77 (110)
T ss_dssp CCHHHHHHHHHHHHSSCEEEEEEEE---TTEEEEEEEEEETTSTTCSSCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCCcceeEEEEE---CCEEEEEeehHhhccCCCCCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHhC
Confidence 7999999999999999999999998 5679999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEeeecCCCCcccccccc
Q 027728 191 KERPRIGKAVSIFIDMDESGGRANEWIY 218 (219)
Q Consensus 191 ~eRPRlGkAVSIpLdLd~~g~R~sEWi~ 218 (219)
++|||+|||||||||| |+|++|||.
T Consensus 78 ~~rPRlGkAVsipLdl---g~r~~E~~~ 102 (110)
T 2ljw_A 78 KERPRLGKAVSIPLDL---GERASEWII 102 (110)
T ss_dssp CCCCBTTBCEEEEECC---HHHHHHHHT
T ss_pred CCCCCCCeEEEEeecC---Cccchhhhh
Confidence 9999999999999999 999999985
No 2
>3l55_A B-1,4-endoglucanase/cellulase; putative beta-1,4-endoglucanase, glycosyl hydrolase family 5, mixed alpha-beta, TIM barrel; HET: MSE; 1.60A {Prevotella bryantii} PDB: 3vdh_A*
Probab=64.76 E-value=3.2 Score=36.45 Aligned_cols=41 Identities=17% Similarity=0.266 Sum_probs=29.8
Q ss_pred cCCceEEEeeeehhhcccCCCCCHHHHHHHHHHHHHHHHhcC
Q 027728 137 MGRNLLALNVMWKYMEQRSFPLTEEEYILRLDDVANTLKCWG 178 (219)
Q Consensus 137 ~Gk~~lyLqVMWkyLEQrSFPLtE~EYlehLdaVAe~Ln~wG 178 (219)
+|-+.|=+-|-|..+.-...++++ +|+++|+.|++.+.+-|
T Consensus 64 ~G~N~vRipi~w~~~~~~~g~~d~-~~l~~ld~vVd~a~~~G 104 (353)
T 3l55_A 64 NGFNAVRIPVTWYEHMDAEGNVDE-AWMMRVKAIVEYAMNAG 104 (353)
T ss_dssp TTEEEEEECCCCGGGBCTTCCBCH-HHHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEcccHHHhcCCCCCcCH-HHHHHHHHHHHHHHHCC
Confidence 333444466778887765666765 69999999999987765
No 3
>3ndz_A Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_A*
Probab=50.55 E-value=8.7 Score=33.02 Aligned_cols=39 Identities=21% Similarity=0.316 Sum_probs=28.8
Q ss_pred CceEEEeeeehhhccc--CCCCCHHHHHHHHHHHHHHHHhcC
Q 027728 139 RNLLALNVMWKYMEQR--SFPLTEEEYILRLDDVANTLKCWG 178 (219)
Q Consensus 139 k~~lyLqVMWkyLEQr--SFPLtE~EYlehLdaVAe~Ln~wG 178 (219)
-+.|=+-|-|..+... .++++ ++|+++|+.|++.+.+.|
T Consensus 56 ~n~vRipi~w~~~~~~~~~~~~~-~~~l~~l~~~v~~a~~~G 96 (345)
T 3ndz_A 56 FNTLRLPVTWDGHMGAAPEYTID-QTWMKRVEEIANYAFDND 96 (345)
T ss_dssp CCEEEECCCCTTSBCCTTTCCBC-HHHHHHHHHHHHHHHTTT
T ss_pred CCEEEEeeehHHhCCCCCCCccC-HHHHHHHHHHHHHHHHCC
Confidence 3434456778877665 46777 468999999999998766
No 4
>1h1n_A Endo type cellulase ENGI; hydrolase, glycosyl hydrolase, family 5, subtype, thermophilic, thermophIle, endoglucanase; 1.12A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1gzj_A
Probab=49.16 E-value=12 Score=31.18 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=26.0
Q ss_pred EEEeeeehhhcc--cCCCCCHHHHHHHHHHHHHHHHhcC
Q 027728 142 LALNVMWKYMEQ--RSFPLTEEEYILRLDDVANTLKCWG 178 (219)
Q Consensus 142 lyLqVMWkyLEQ--rSFPLtE~EYlehLdaVAe~Ln~wG 178 (219)
|=+.|-|..++- ...+.+ ++|+++|+.+++.+.+-|
T Consensus 48 vRi~i~w~~~~~~~~~~~~~-~~~l~~~~~~v~~~~~~g 85 (305)
T 1h1n_A 48 FRVPFMMERLVPNSMTGSPD-PNYLADLIATVNAITQKG 85 (305)
T ss_dssp EEEEECHHHHSCSSTTSCCC-HHHHHHHHHHHHHHHHTT
T ss_pred EEecccHHHcCCCCCCCCcC-HHHHHHHHHHHHHHHHCC
Confidence 335567988764 245565 579999999999987754
No 5
>3vx7_B E2; ubiquitin conjugation; 3.20A {Kluyveromyces marxianus} PDB: 2lpu_A
Probab=47.56 E-value=14 Score=30.44 Aligned_cols=27 Identities=33% Similarity=0.525 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcCchHHHH
Q 027728 158 LTEEEYILRLDDVANTLKCWGAVSHIR 184 (219)
Q Consensus 158 LtE~EYlehLdaVAe~Ln~wG~~d~Vr 184 (219)
||++||.++|..+++.+..|...+.+.
T Consensus 7 l~~~e~~~QL~~l~~~~~~w~~~~~~~ 33 (152)
T 3vx7_B 7 LTLPEYNEQIPNVRSLLTKWAKVERIQ 33 (152)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred ccHHHHHHHHHHHHHHHhhhHhhhccc
Confidence 799999999999999999999887654
No 6
>3icg_A Endoglucanase D; cellulase, xylanase, carbohydrate binding DOM glucanase, carbohydrate metabolism, cellulose degradation, glycosidase; HET: BTB; 2.10A {Clostridium cellulovorans}
Probab=39.96 E-value=13 Score=33.70 Aligned_cols=40 Identities=23% Similarity=0.363 Sum_probs=29.5
Q ss_pred CCceEEEeeeehhhccc--CCCCCHHHHHHHHHHHHHHHHhcC
Q 027728 138 GRNLLALNVMWKYMEQR--SFPLTEEEYILRLDDVANTLKCWG 178 (219)
Q Consensus 138 Gk~~lyLqVMWkyLEQr--SFPLtE~EYlehLdaVAe~Ln~wG 178 (219)
|-+.|=+-|-|..+++. .+.+++ +|+++|+.|++++.+.|
T Consensus 58 G~N~vRipi~w~~~~~~~~~~~~~~-~~l~~~d~vv~~a~~~G 99 (515)
T 3icg_A 58 GFNTLRLPVTWDGHMGAAPEYTIDQ-TWMKRVEEIANYAFDND 99 (515)
T ss_dssp TCCEEEECCCCTTSBCCTTTCCBCH-HHHHHHHHHHHHHHTTT
T ss_pred CCCEEEEccchHHhCCCCCCCccCH-HHHHHHHHHHHHHHHCC
Confidence 34444466778887776 366665 69999999999998876
No 7
>3aof_A Endoglucanase; glycosyl hydrolase family 5, cellulase, biofuel, hyperthermo hydrolase; HET: BMA; 1.29A {Thermotoga maritima} PDB: 3amg_A* 3amc_A 3amd_A 3mmu_A 3mmw_A 3azs_A* 3azr_A* 3azt_A*
Probab=35.85 E-value=20 Score=29.29 Aligned_cols=41 Identities=17% Similarity=0.360 Sum_probs=28.1
Q ss_pred cCCceEEEeeeehhhcccC--CCCCHHHHHHHHHHHHHHHHhcC
Q 027728 137 MGRNLLALNVMWKYMEQRS--FPLTEEEYILRLDDVANTLKCWG 178 (219)
Q Consensus 137 ~Gk~~lyLqVMWkyLEQrS--FPLtE~EYlehLdaVAe~Ln~wG 178 (219)
+|-+.|=+-|-|..++... |..+ ++++++|+.+++.+.+.|
T Consensus 45 ~G~n~vR~~i~w~~~~~~~~~~~~~-~~~~~~~d~~v~~a~~~G 87 (317)
T 3aof_A 45 AGFSHVRIPIRWSTHAYAFPPYKIM-DRFFKRVDEVINGALKRG 87 (317)
T ss_dssp HTCSEEEECCCGGGGBCSSTTCCBC-HHHHHHHHHHHHHHHHTT
T ss_pred cCCCEEEEeccHHHhcCCCCCCcCC-HHHHHHHHHHHHHHHHCC
Confidence 3444444557787776433 4455 468999999999988766
No 8
>2fki_A Protein YJBR; NESG, GFT-alpha-beta, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Escherichia coli} SCOP: d.198.3.1
Probab=29.55 E-value=40 Score=25.50 Aligned_cols=39 Identities=15% Similarity=0.014 Sum_probs=28.8
Q ss_pred ccHHHHHHHHHHHhCcccccee---EEEecCCceEEEeeeeh
Q 027728 111 FSGLDLATLIRKKYGRSYDVQL---IKKFMGRNLLALNVMWK 149 (219)
Q Consensus 111 mtG~EL~~LL~~KWG~sYDvqL---~r~~~Gk~~lyLqVMWk 149 (219)
||-.+|++++..++|...|..+ .-++.-.+++|.=+|+.
T Consensus 1 M~~~~l~~~~l~lpg~~e~~p~~~~~~vfkv~gK~FA~~~~~ 42 (126)
T 2fki_A 1 MTISELLQYCMAKPGAEQSVHNDWKATQIKVEDVLFAMVKEV 42 (126)
T ss_dssp CCHHHHHHHHTTSTTCEEEEETTTTEEEEESSSCEEEEECCB
T ss_pred CCHHHHHHHHHhCCCCEeEcCCCCceEEEEECCEEEEEEEec
Confidence 6789999999999999988776 22222244578777764
No 9
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=28.27 E-value=1.2e+02 Score=21.45 Aligned_cols=41 Identities=15% Similarity=0.370 Sum_probs=34.4
Q ss_pred cCcChHHHHHHHHHHhcCCC-CcccHHHHHHHHHHHh-Cccccce
Q 027728 89 NGVNSELLRENLERIVGVDD-STFSGLDLATLIRKKY-GRSYDVQ 131 (219)
Q Consensus 89 ~g~~s~~~r~~l~r~~g~~~-~~mtG~EL~~LL~~KW-G~sYDvq 131 (219)
++.+.+.+++.+..++...| +.+|-..++..|.+++ | +|+.
T Consensus 10 ~~Psd~ei~~~I~~IL~~aDL~tvT~K~VR~~Le~~~pg--~dLs 52 (70)
T 1q1v_A 10 KPPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPT--YDLT 52 (70)
T ss_dssp CCCCHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHCSS--SCCS
T ss_pred CCcCHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHccC--CCCh
Confidence 45566788999999999976 6799999999999999 7 6665
No 10
>1ceo_A Cellulase CELC; glycosyl hydrolase, family A/5 of glycosyl hydrolases, cellulose degradation; 1.90A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 1cen_A 1cec_A
Probab=27.68 E-value=40 Score=27.92 Aligned_cols=41 Identities=15% Similarity=0.133 Sum_probs=27.7
Q ss_pred cCCceEEEeeeehhhcccC--CCCCHHHHHHHHHHHHHHHHhcC
Q 027728 137 MGRNLLALNVMWKYMEQRS--FPLTEEEYILRLDDVANTLKCWG 178 (219)
Q Consensus 137 ~Gk~~lyLqVMWkyLEQrS--FPLtE~EYlehLdaVAe~Ln~wG 178 (219)
+|-+.|=+-|-|..++... .+.+ ++|+++|+.+++.+.+.|
T Consensus 40 ~G~n~vRi~i~~~~~~~~~~~g~~~-~~~~~~l~~~v~~a~~~G 82 (343)
T 1ceo_A 40 AGFDHVRLPFDYPIIESDDNVGEYK-EDGLSYIDRCLEWCKKYN 82 (343)
T ss_dssp HTCCEEEEEEEGGGTBCSSSTTCBC-HHHHHHHHHHHHHHHHTT
T ss_pred cCCCEEEecCCHHHhccccCCCccc-HHHHHHHHHHHHHHHHCC
Confidence 3444444667788776554 4455 468999999999887643
No 11
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=26.95 E-value=45 Score=21.63 Aligned_cols=22 Identities=14% Similarity=0.099 Sum_probs=16.9
Q ss_pred eeehhhcccCCCCCHHHHHHHHHHHHHHHHhc
Q 027728 146 VMWKYMEQRSFPLTEEEYILRLDDVANTLKCW 177 (219)
Q Consensus 146 VMWkyLEQrSFPLtE~EYlehLdaVAe~Ln~w 177 (219)
+|+.+ .||++| +++|+.||...
T Consensus 60 ~Mp~~------~ls~~e----i~~l~~yl~~l 81 (82)
T 2exv_A 60 PMPPN------AVSDDE----AQTLAKWVLSQ 81 (82)
T ss_dssp CBCCC------CCCHHH----HHHHHHHHHTC
T ss_pred CCCCC------CCCHHH----HHHHHHHHHhC
Confidence 57765 799876 78999998753
No 12
>1edg_A Endoglucanase A; family A, cellulases, xylanases, family 5 of glycosyl hydrol cellulose degradation; 1.60A {Clostridium cellulolyticum} SCOP: c.1.8.3
Probab=25.71 E-value=30 Score=29.61 Aligned_cols=41 Identities=17% Similarity=0.293 Sum_probs=26.9
Q ss_pred cCCceEEEeeeehhhcc-cCCCCCHHHHHHHHHHHHHHHHhcC
Q 027728 137 MGRNLLALNVMWKYMEQ-RSFPLTEEEYILRLDDVANTLKCWG 178 (219)
Q Consensus 137 ~Gk~~lyLqVMWkyLEQ-rSFPLtE~EYlehLdaVAe~Ln~wG 178 (219)
+|-+.|=+-|-|..++. ..++.+ ++|+++|+.|++.+.+-|
T Consensus 73 ~G~n~vRipv~w~~~~~~~~~~~~-~~~l~~l~~~v~~a~~~G 114 (380)
T 1edg_A 73 KGFNTVRIPVSWHPHVSGSDYKIS-DVWMNRVQEVVNYCIDNK 114 (380)
T ss_dssp HTCCEEEECCCCGGGEETTTTEEC-HHHHHHHHHHHHHHHTTT
T ss_pred cCCCEEEecccHHhhcCCCCCcCC-HHHHHHHHHHHHHHHHCC
Confidence 44444445567876653 234444 478999999999987744
No 13
>3qho_A Endoglucanase, 458AA long hypothetical endo-1,4-beta-glucanase; cellulase, catalytic domain, hydrolase; HET: CTT; 1.65A {Pyrococcus horikoshii} PDB: 3axx_A* 2zum_A 2zun_A* 3qhm_A* 3qhn_A*
Probab=25.14 E-value=27 Score=31.85 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=29.4
Q ss_pred cCCceEEEeeeehhhcccCCC------CCH----HHHHHHHHHHHHHHHhcC
Q 027728 137 MGRNLLALNVMWKYMEQRSFP------LTE----EEYILRLDDVANTLKCWG 178 (219)
Q Consensus 137 ~Gk~~lyLqVMWkyLEQrSFP------LtE----~EYlehLdaVAe~Ln~wG 178 (219)
+|-+.|=+-|.|..++-...| .++ ++|++.|+.|++.+.+.|
T Consensus 96 ~G~N~VRipi~~~~l~~~~~p~~~~~~~np~~~~~~~l~~ld~vV~~a~~~G 147 (458)
T 3qho_A 96 LGFNAIRLPFCTESVKPGTQPIGIDYSKNPDLRGLDSLQIMEKIIKKAGDLG 147 (458)
T ss_dssp TTCCEEEEEEETGGGSTTCCCCCCCTTTCGGGTTCCHHHHHHHHHHHHHHTT
T ss_pred cCCCEEEEeeeHHHhCCCCCccccccccCccccchHHHHHHHHHHHHHHHCC
Confidence 344444466888888655433 333 479999999999998876
No 14
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=24.99 E-value=90 Score=22.57 Aligned_cols=34 Identities=24% Similarity=0.484 Sum_probs=29.4
Q ss_pred CcChHHHHHHHHHHhcCCC--CcccHHHHHHHHHHH
Q 027728 90 GVNSELLRENLERIVGVDD--STFSGLDLATLIRKK 123 (219)
Q Consensus 90 g~~s~~~r~~l~r~~g~~~--~~mtG~EL~~LL~~K 123 (219)
.+.++.++..+..++..++ .++|-+.|.++|.++
T Consensus 15 ~~S~~~Ik~~Ik~lI~~Ed~~kPlSD~~I~~~L~~~ 50 (76)
T 2ahq_A 15 GLTQGELMKLIKEIVENEDKRKPYSDQEIANILKEK 50 (76)
T ss_dssp SCCHHHHHHHHHHHGGGCCSSSCCCHHHHHHHHTTT
T ss_pred cccHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc
Confidence 4567889999999999984 689999999999776
No 15
>3kzs_A Glycosyl hydrolase family 5; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=24.93 E-value=42 Score=31.34 Aligned_cols=42 Identities=19% Similarity=0.190 Sum_probs=28.2
Q ss_pred cCCceEEEeee-----ehhhcccCCCCC-------H---HHHHHHHHHHHHHHHhcC
Q 027728 137 MGRNLLALNVM-----WKYMEQRSFPLT-------E---EEYILRLDDVANTLKCWG 178 (219)
Q Consensus 137 ~Gk~~lyLqVM-----WkyLEQrSFPLt-------E---~EYlehLdaVAe~Ln~wG 178 (219)
.|.+.|=++|. |..-++.+|+-. + ++|+.|++.+++.+++.|
T Consensus 64 qGFNvIq~~vl~~~p~~n~~g~~pf~~~~df~~~n~pn~~~YF~h~d~~I~~a~~~G 120 (463)
T 3kzs_A 64 RGYNVIQVQTLNNVPSMNIYGQYSMTDGYNFKNINQKGVYGYWDHMDYIIRTAAKKG 120 (463)
T ss_dssp TTCCEEEEESCSSSSCBCTTSCBSCSSTTCCTTCCCTTCCCHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEEeecCCCCCCcCCCCCcCCCcccccCCCcCHHHHHHHHHHHHHHHHHCC
Confidence 67777666664 333355455321 2 489999999999998755
No 16
>2bmm_A Thermostable hemoglobin from thermobifida fusca; bacterial hemoglobin, thermostable protein, oxygen storage/transport; HET: HEM; 2.48A {Thermobifida fusca}
Probab=23.47 E-value=1.3e+02 Score=21.82 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=28.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCchHHHHHHH
Q 027728 155 SFPLTEEEYILRLDDVANTLKCWGAVSHIRNSL 187 (219)
Q Consensus 155 SFPLtE~EYlehLdaVAe~Ln~wG~~d~Vr~~L 187 (219)
.||+|+++|-.=|+...+.|...|..+.+++.+
T Consensus 75 ~~~I~~~~f~~wl~~~~~al~e~~~~~~~~~~~ 107 (123)
T 2bmm_A 75 PYRIGAEERDRWLTHMRAAVDDLALPAHLEQQL 107 (123)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 579999999999999999999999766666654
No 17
>2cks_A Endoglucanase E-5; carbohydrate metabolism, polysaccharide degradation, glycoside hydrolase family 5, hydrolase, glycosidase; HET: BEN; 1.6A {Thermobifida fusca} PDB: 2ckr_A*
Probab=22.85 E-value=1.1e+02 Score=25.24 Aligned_cols=31 Identities=6% Similarity=0.249 Sum_probs=23.3
Q ss_pred eeeehhhcccCCCCCHHHHHHHHHHHHHHHHhcC
Q 027728 145 NVMWKYMEQRSFPLTEEEYILRLDDVANTLKCWG 178 (219)
Q Consensus 145 qVMWkyLEQrSFPLtE~EYlehLdaVAe~Ln~wG 178 (219)
-|.|. ...|+.+++.|+++|+.|++...+.|
T Consensus 63 ~~~~~---~~~~~~~~~~~l~~ld~~v~~a~~~G 93 (306)
T 2cks_A 63 SMYIQ---EDGYETNPRGFTDRMHQLIDMATARG 93 (306)
T ss_dssp EEESS---TTSGGGCHHHHHHHHHHHHHHHHTTT
T ss_pred Eeeec---CCCcccCHHHHHHHHHHHHHHHHHCC
Confidence 34574 23467788789999999999988755
No 18
>2kfp_A Pspto_3016 protein; alpha, beta, double-WING, structural genomics, PSI-2, protein structure initiative; NMR {Pseudomonas syringae} PDB: 3h9x_A
Probab=22.73 E-value=42 Score=25.48 Aligned_cols=38 Identities=13% Similarity=0.034 Sum_probs=27.1
Q ss_pred ccHHHHHHHHHHHhCccccceeE-----EE--ecCCceEEEeeee
Q 027728 111 FSGLDLATLIRKKYGRSYDVQLI-----KK--FMGRNLLALNVMW 148 (219)
Q Consensus 111 mtG~EL~~LL~~KWG~sYDvqL~-----r~--~~Gk~~lyLqVMW 148 (219)
||-.+|+++|.+++|...|..+- .. ....+++|.=+|+
T Consensus 1 M~~~~l~~y~l~~pg~~~~~p~~~~~~~~v~rv~~~gK~FA~~~~ 45 (125)
T 2kfp_A 1 MNRQQFIDYAQKKYDTKPDHPWEKFPDYAVFRHSDNDKWYALLMD 45 (125)
T ss_dssp CCHHHHHHHHHHHTCCCCBCSCTTCTTCEECCCTTTCCCCCEEEE
T ss_pred CCHHHHHHHHHhCCCCEeECCcCCCCCceEEEEcCCCeEEEEEEe
Confidence 67889999999999999987762 22 2211456766776
No 19
>3aq9_A Group 1 truncated hemoglobin; 2/2 fold hemoglobin, nitric oxide detoxification, oxygen BIN; HET: HEM; 1.74A {Tetrahymena pyriformis} PDB: 3aq5_A* 3aq6_A* 3aq8_A* 3aq7_A*
Probab=22.68 E-value=1.2e+02 Score=22.00 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=28.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCchHHHHHHH
Q 027728 155 SFPLTEEEYILRLDDVANTLKCWGAVSHIRNSL 187 (219)
Q Consensus 155 SFPLtE~EYlehLdaVAe~Ln~wG~~d~Vr~~L 187 (219)
.||+|+++|-.=|+...+.|...|..+.+++.+
T Consensus 75 ~~~I~~~~f~~wl~~~~~al~~~~~~~~~~~~~ 107 (121)
T 3aq9_A 75 GMNLQNLHFDAIIENLAATLKELGVTDAVINEA 107 (121)
T ss_dssp TSCBCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 579999999999999999999999877766554
No 20
>1dlw_A Hemoglobin; oxygen storage/transport complex; HET: HEM; 1.54A {Paramecium caudatum} SCOP: a.1.1.1 PDB: 1uvy_A*
Probab=22.50 E-value=1.5e+02 Score=21.24 Aligned_cols=33 Identities=6% Similarity=0.206 Sum_probs=28.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCchHHHHHHH
Q 027728 155 SFPLTEEEYILRLDDVANTLKCWGAVSHIRNSL 187 (219)
Q Consensus 155 SFPLtE~EYlehLdaVAe~Ln~wG~~d~Vr~~L 187 (219)
.||+|+++|-.=|+...+.|...|..+.+++.+
T Consensus 70 ~~~I~~~~f~~wl~~~~~al~~~~~~~~~~~~~ 102 (116)
T 1dlw_A 70 NMGVSNAQFTTVIGHLRSALTGAGVAAALVEQT 102 (116)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHHcCcCHHHHHHH
Confidence 589999999999999999999999766555544
No 21
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=22.28 E-value=71 Score=27.54 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=14.1
Q ss_pred hHHHHHHHHhcCCCCCC
Q 027728 180 VSHIRNSLAKLKERPRI 196 (219)
Q Consensus 180 ~d~Vr~~L~~T~eRPRl 196 (219)
-+.|+.||+.-++||=+
T Consensus 141 r~FIk~YL~~yP~rpmv 157 (213)
T 3dlm_A 141 RDFIEEYVTAYPNRPMV 157 (213)
T ss_dssp HHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHhCCCCceE
Confidence 45699999999999964
No 22
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=22.10 E-value=60 Score=20.92 Aligned_cols=22 Identities=32% Similarity=0.220 Sum_probs=16.7
Q ss_pred eeehhhcccCCCCCHHHHHHHHHHHHHHHHhc
Q 027728 146 VMWKYMEQRSFPLTEEEYILRLDDVANTLKCW 177 (219)
Q Consensus 146 VMWkyLEQrSFPLtE~EYlehLdaVAe~Ln~w 177 (219)
.|..+ .||++| +.+|+.||...
T Consensus 60 ~Mp~~------~ls~~e----i~~l~~yl~~l 81 (82)
T 1cch_A 60 PMPPN------PVTEEE----AKILAEWVLSL 81 (82)
T ss_dssp CCCCC------SCCHHH----HHHHHHHHHHC
T ss_pred CCCCC------CCCHHH----HHHHHHHHHhc
Confidence 57765 799876 78899988753
No 23
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=21.61 E-value=65 Score=21.03 Aligned_cols=22 Identities=18% Similarity=0.072 Sum_probs=16.8
Q ss_pred eeehhhcccCCCCCHHHHHHHHHHHHHHHHhc
Q 027728 146 VMWKYMEQRSFPLTEEEYILRLDDVANTLKCW 177 (219)
Q Consensus 146 VMWkyLEQrSFPLtE~EYlehLdaVAe~Ln~w 177 (219)
.|+. |.||++| +++|++||...
T Consensus 58 ~Mp~------~~Lsd~e----i~~l~~yl~~l 79 (80)
T 1ayg_A 58 PMPP------QNVTDAE----AKQLAQWILSI 79 (80)
T ss_dssp CBCC------CCCCHHH----HHHHHHHHHHC
T ss_pred CCCC------CCCCHHH----HHHHHHHHHhc
Confidence 4776 3799987 78899998753
No 24
>2osx_A Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel, hydrolase; HET: SIA GAL BGC 16C; 1.10A {Rhodococcus SP} PDB: 2oyk_A* 2osw_A* 2oyl_A* 2oym_A* 2osy_A*
Probab=21.27 E-value=45 Score=29.72 Aligned_cols=34 Identities=18% Similarity=0.335 Sum_probs=24.9
Q ss_pred EeeeehhhcccCCCCCHHHHHHHHHHHHHHHHhcC
Q 027728 144 LNVMWKYMEQRSFPLTEEEYILRLDDVANTLKCWG 178 (219)
Q Consensus 144 LqVMWkyLEQrSFPLtE~EYlehLdaVAe~Ln~wG 178 (219)
+-|.|..++-..-..+ ++|+++|+.+++.+.+.|
T Consensus 85 l~v~w~~~~p~~g~~~-~~~l~~l~~~v~~a~~~G 118 (481)
T 2osx_A 85 FLISWRSVEPAPGVYD-QQYLDRVEDRVGWYAERG 118 (481)
T ss_dssp EEECHHHHCSBTTBCC-HHHHHHHHHHHHHHHHTT
T ss_pred EeCcHHHcCCCCCCcC-HHHHHHHHHHHHHHHHCC
Confidence 4567998876543444 679999999998887655
No 25
>3ayr_A Endoglucanase; TIM barrel, hydrolase, carbohydrate/sugar binding; 2.00A {Piromyces rhizinflatus} PDB: 3ays_A*
Probab=20.73 E-value=52 Score=28.23 Aligned_cols=39 Identities=15% Similarity=0.300 Sum_probs=25.2
Q ss_pred CceEEEeeeehhhcc--cCCCCCHHHHHHHHHHHHHHHHhcC
Q 027728 139 RNLLALNVMWKYMEQ--RSFPLTEEEYILRLDDVANTLKCWG 178 (219)
Q Consensus 139 k~~lyLqVMWkyLEQ--rSFPLtE~EYlehLdaVAe~Ln~wG 178 (219)
-+.|=+-|-|..+.. ..+..+ ++|+++|+.|++.+.+-|
T Consensus 76 ~N~vRipi~w~~~~~~~~~~~~~-~~~l~~~~~vv~~a~~~G 116 (376)
T 3ayr_A 76 FNVFRIPTTWSGHFGEAPDYKID-EKWLKRVHEVVDYPYKNG 116 (376)
T ss_dssp CCEEEECCCCTTSBCCTTTCCBC-HHHHHHHHHHHHHHHTTT
T ss_pred CCEEEEeeEChhhcCCCCCCccC-HHHHHHHHHHHHHHHHCC
Confidence 333335566765432 235555 579999999999987643
Done!