Query 027728
Match_columns 219
No_of_seqs 74 out of 76
Neff 2.9
Searched_HMMs 13730
Date Tue Mar 26 00:30:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027728.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027728hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1f1ca_ a.3.1.1 (A:) Photosyst 48.0 5.5 0.0004 27.0 2.6 17 156-176 102-119 (129)
2 d1mz4a_ a.3.1.1 (A:) Cytochrom 46.3 6 0.00043 27.0 2.6 16 156-175 104-120 (131)
3 d1cora_ a.3.1.1 (A:) Cytochrom 37.3 11 0.00079 24.0 2.7 18 155-176 63-80 (82)
4 d2fkia1 d.198.3.1 (A:1-118) Hy 34.3 10 0.00075 26.8 2.3 39 111-149 1-42 (118)
5 d1vqza2 d.104.1.3 (A:1-241) Lp 33.1 16 0.0012 27.8 3.4 51 129-180 62-115 (241)
6 d1e29a_ a.3.1.1 (A:) Photosyst 32.3 14 0.00099 25.4 2.7 16 156-175 104-120 (135)
7 d2c8ma1 d.104.1.3 (A:1-256) Li 28.0 34 0.0025 26.1 4.6 53 126-179 63-119 (256)
8 d1edga_ c.1.8.3 (A:) Endogluca 25.4 12 0.0009 29.8 1.5 39 139-178 75-114 (380)
9 d1vjza_ c.1.8.3 (A:) Endogluca 25.3 12 0.00087 28.2 1.4 57 108-179 18-75 (325)
10 d1kp0a1 c.55.2.1 (A:1-156) Cre 23.7 28 0.002 24.0 3.1 34 156-189 17-56 (156)
11 d351ca_ a.3.1.1 (A:) Cytochrom 23.4 30 0.0022 21.8 2.9 18 155-176 63-80 (82)
12 d1x2ga2 d.104.1.3 (A:1-246) Tw 21.6 20 0.0014 27.4 2.0 49 128-180 63-114 (246)
13 d1ztwa1 e.8.1.2 (A:24-278) MML 20.8 28 0.0021 27.0 2.8 22 158-179 208-229 (255)
14 d1ceoa_ c.1.8.3 (A:) Endogluca 20.7 27 0.0019 27.1 2.7 40 138-178 41-82 (340)
15 d1chma1 c.55.2.1 (A:2-156) Cre 20.5 38 0.0027 23.4 3.2 34 157-190 17-56 (155)
No 1
>d1f1ca_ a.3.1.1 (A:) Photosystem II associated cytochrome c549 {Arthrospira maxima [TaxId: 129910]}
Probab=47.98 E-value=5.5 Score=27.05 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=14.4
Q ss_pred CC-CCHHHHHHHHHHHHHHHHh
Q 027728 156 FP-LTEEEYILRLDDVANTLKC 176 (219)
Q Consensus 156 FP-LtE~EYlehLdaVAe~Ln~ 176 (219)
|+ ||++| |.+|+.||..
T Consensus 102 ~~~Lsded----i~ai~aYi~~ 119 (129)
T d1f1ca_ 102 MRNISEDD----LYNVAGYILL 119 (129)
T ss_dssp GSSCCHHH----HHHHHHHHHH
T ss_pred cccCCHHH----HHHHHHHHHH
Confidence 44 99998 9999999876
No 2
>d1mz4a_ a.3.1.1 (A:) Cytochrome c550 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=46.29 E-value=6 Score=27.02 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=12.4
Q ss_pred CC-CCHHHHHHHHHHHHHHHH
Q 027728 156 FP-LTEEEYILRLDDVANTLK 175 (219)
Q Consensus 156 FP-LtE~EYlehLdaVAe~Ln 175 (219)
|+ ||++| |.+|+.||.
T Consensus 104 f~~Lsdee----i~av~aYi~ 120 (131)
T d1mz4a_ 104 MRNLTEKD----LVAIAGHIL 120 (131)
T ss_dssp GTTCCHHH----HHHHHHHHH
T ss_pred ccCCCHHH----HHHHHHHHH
Confidence 44 99876 788999983
No 3
>d1cora_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas stutzeri [TaxId: 316]}
Probab=37.34 E-value=11 Score=23.96 Aligned_cols=18 Identities=33% Similarity=0.333 Sum_probs=14.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHh
Q 027728 155 SFPLTEEEYILRLDDVANTLKC 176 (219)
Q Consensus 155 SFPLtE~EYlehLdaVAe~Ln~ 176 (219)
+|.||++| +++||.||..
T Consensus 63 ~~~lsdee----i~~la~Yi~S 80 (82)
T d1cora_ 63 PNPVTEEE----AKILAEWILS 80 (82)
T ss_dssp CCSCCHHH----HHHHHHHHHS
T ss_pred ccCCCHHH----HHHHHHHHHh
Confidence 46799987 7889999875
No 4
>d2fkia1 d.198.3.1 (A:1-118) Hypothetical protein YjbR {Escherichia coli [TaxId: 562]}
Probab=34.30 E-value=10 Score=26.76 Aligned_cols=39 Identities=15% Similarity=-0.012 Sum_probs=27.6
Q ss_pred ccHHHHHHHHHHHhCccccceeE---EEecCCceEEEeeeeh
Q 027728 111 FSGLDLATLIRKKYGRSYDVQLI---KKFMGRNLLALNVMWK 149 (219)
Q Consensus 111 mtG~EL~~LL~~KWG~sYDvqL~---r~~~Gk~~lyLqVMWk 149 (219)
||..||+++|++.-|...|.++= -++.-++++|.-+.+.
T Consensus 1 Mt~~el~~~clslpga~e~~p~g~~~~~fkv~gK~FA~~~~~ 42 (118)
T d2fkia1 1 MTISELLQYCMAKPGAEQSVHNDWKATQIKVEDVLFAMVKEV 42 (118)
T ss_dssp CCHHHHHHHHTTSTTCEEEEETTTTEEEEESSSCEEEEECCB
T ss_pred CCHHHHHHHHHhCCCCEeeCCCCCceEEEEECCEEEEEEEcC
Confidence 89999999999999998877641 1122244588766653
No 5
>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=33.10 E-value=16 Score=27.80 Aligned_cols=51 Identities=14% Similarity=0.205 Sum_probs=38.8
Q ss_pred cceeEEEecCCceEEE---eeeehhhcccCCCCCHHHHHHHHHHHHHHHHhcCch
Q 027728 129 DVQLIKKFMGRNLLAL---NVMWKYMEQRSFPLTEEEYILRLDDVANTLKCWGAV 180 (219)
Q Consensus 129 DvqL~r~~~Gk~~lyL---qVMWkyLEQrSFPLtE~EYlehLdaVAe~Ln~wG~~ 180 (219)
.+.++||.-|.+.||. |++|-..-..+.+..+ .|..-.+.|++.|..+|.-
T Consensus 62 gi~vvRR~tGGgaV~h~~g~~~~s~i~~~~~~~~~-~~~~~~~~i~~al~~~g~~ 115 (241)
T d1vqza2 62 GIEVVRRISGGGAVYHDLNNLNYTIISKEDENKAF-DFKSFSTPVINTLAQLGVK 115 (241)
T ss_dssp TCEEEECSSCSCCEEECTTEEEEEEEEECCTTCCC-SHHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEcCCCceEEECCCCeEEEEEecCccchHH-HHHHHHHHHHHHHHHhccc
Confidence 4778999888888887 6777766666666443 4777888899999998853
No 6
>d1e29a_ a.3.1.1 (A:) Photosystem II associated cytochrome c549 {Synechocystis sp., pcc 6803 [TaxId: 1143]}
Probab=32.34 E-value=14 Score=25.37 Aligned_cols=16 Identities=31% Similarity=0.337 Sum_probs=13.1
Q ss_pred CC-CCHHHHHHHHHHHHHHHH
Q 027728 156 FP-LTEEEYILRLDDVANTLK 175 (219)
Q Consensus 156 FP-LtE~EYlehLdaVAe~Ln 175 (219)
|+ ||++| +.+||.||.
T Consensus 104 ~~~Lsded----i~~vaaYi~ 120 (135)
T d1e29a_ 104 MRNYTEDD----IFDVAGYTL 120 (135)
T ss_dssp GTTCCHHH----HHHHHHHHH
T ss_pred cCCCCHHH----HHHHHHHHH
Confidence 44 99987 889999985
No 7
>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma acidophilum [TaxId: 2303]}
Probab=27.98 E-value=34 Score=26.13 Aligned_cols=53 Identities=11% Similarity=0.265 Sum_probs=37.7
Q ss_pred ccccceeEEEecCCceEEE---eeeehhhcccCCCCCH-HHHHHHHHHHHHHHHhcCc
Q 027728 126 RSYDVQLIKKFMGRNLLAL---NVMWKYMEQRSFPLTE-EEYILRLDDVANTLKCWGA 179 (219)
Q Consensus 126 ~sYDvqL~r~~~Gk~~lyL---qVMWkyLEQrSFPLtE-~EYlehLdaVAe~Ln~wG~ 179 (219)
+...+.++||.-|.+.||. |++|-..--.. +.+- +-|..-.+.|.+.|...|.
T Consensus 63 ~~~gi~vvRR~tGGgaV~hd~g~l~~s~i~~~~-~~~~~~~y~~~~~~i~~~l~~lGi 119 (256)
T d2c8ma1 63 KKNGIMLARRYTGGGAVYHDLGDLNFSVVRSSD-DMDITSMFRTMNEAVVNSLRILGL 119 (256)
T ss_dssp HHTTCEEEECSSCSCCEEECTTEEEEEEEEECS-SCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HhCCCcEEEEecCCceEEECCCCeEEEEEEccC-CCCHHHHHHHHHHHHHHHHhhcCc
Confidence 4456778899888888887 77776654433 2343 4466677889999999885
No 8
>d1edga_ c.1.8.3 (A:) Endoglucanase CelA {Clostridium cellulolyticum [TaxId: 1521]}
Probab=25.36 E-value=12 Score=29.79 Aligned_cols=39 Identities=15% Similarity=0.296 Sum_probs=26.1
Q ss_pred CceEEEeeeehh-hcccCCCCCHHHHHHHHHHHHHHHHhcC
Q 027728 139 RNLLALNVMWKY-MEQRSFPLTEEEYILRLDDVANTLKCWG 178 (219)
Q Consensus 139 k~~lyLqVMWky-LEQrSFPLtE~EYlehLdaVAe~Ln~wG 178 (219)
.+.|=+=|-|.. ++-..|.++ ++|+.+|+.|+++...-|
T Consensus 75 fn~vRiPv~w~~~~~~~~~~i~-~~~l~~v~~vV~~a~~~G 114 (380)
T d1edga_ 75 FNTVRIPVSWHPHVSGSDYKIS-DVWMNRVQEVVNYCIDNK 114 (380)
T ss_dssp CCEEEECCCCGGGEETTTTEEC-HHHHHHHHHHHHHHHTTT
T ss_pred CCEEEEcccHHHhcCCCCCccC-HHHHHHHHHHHHHHHHcC
Confidence 333334455544 555557777 579999999999887655
No 9
>d1vjza_ c.1.8.3 (A:) Endoglucanase homologue TM1752 {Thermotoga maritima [TaxId: 2336]}
Probab=25.31 E-value=12 Score=28.17 Aligned_cols=57 Identities=14% Similarity=0.298 Sum_probs=36.4
Q ss_pred CCcccHHHHHHHHHHHhCccccceeEEEecCCceEEEeeeehhhcccCCCC-CHHHHHHHHHHHHHHHHhcCc
Q 027728 108 DSTFSGLDLATLIRKKYGRSYDVQLIKKFMGRNLLALNVMWKYMEQRSFPL-TEEEYILRLDDVANTLKCWGA 179 (219)
Q Consensus 108 ~~~mtG~EL~~LL~~KWG~sYDvqL~r~~~Gk~~lyLqVMWkyLEQrSFPL-tE~EYlehLdaVAe~Ln~wG~ 179 (219)
+..+|=.++..| +.||.. .+| |-|-|..++-..-|. .-++|+++|+.+++.+.+.|-
T Consensus 18 ~~~~~e~d~~~l--~~~G~n----~vR---------lpv~~~~~~~~~~~~~~~~~~l~~ld~~v~~~~~~gi 75 (325)
T d1vjza_ 18 TGNFKEEDFLWM--AQWDFN----FVR---------IPMCHLLWSDRGNPFIIREDFFEKIDRVIFWGEKYGI 75 (325)
T ss_dssp CCCCCHHHHHHH--HHTTCC----EEE---------EEEEGGGTSCSSCTTCCCGGGHHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHH--HHcCCC----EEE---------ecccHHHccCCCCCCccCHHHHHHHHHHHHHHHHcCC
Confidence 345665666543 456543 233 557787777765442 235699999999999987663
No 10
>d1kp0a1 c.55.2.1 (A:1-156) Creatinase {Actinobacillus sp. [TaxId: 41114]}
Probab=23.72 E-value=28 Score=24.00 Aligned_cols=34 Identities=15% Similarity=0.103 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCch------HHHHHHHHh
Q 027728 156 FPLTEEEYILRLDDVANTLKCWGAV------SHIRNSLAK 189 (219)
Q Consensus 156 FPLtE~EYlehLdaVAe~Ln~wG~~------d~Vr~~L~~ 189 (219)
=|.|++||..+++.+-+.+..=|-- ..=..||..
T Consensus 17 ~pFs~~E~~~R~~klr~~M~e~~iDallit~~~ni~YlTG 56 (156)
T d1kp0a1 17 TPFSZAEMTRRZBRLRAWMAKSBIDAVLFTSYHNINYYSG 56 (156)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHTCSEEEECSHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCEEEEcCcccCeeecC
Confidence 6889999999999999999886532 233466766
No 11
>d351ca_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=23.43 E-value=30 Score=21.80 Aligned_cols=18 Identities=11% Similarity=0.204 Sum_probs=14.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHh
Q 027728 155 SFPLTEEEYILRLDDVANTLKC 176 (219)
Q Consensus 155 SFPLtE~EYlehLdaVAe~Ln~ 176 (219)
+|+||++| +.+||.||..
T Consensus 63 ~~~lsd~e----i~~la~Yi~S 80 (82)
T d351ca_ 63 PNAVSDDE----AQTLAKWVLS 80 (82)
T ss_dssp CCSCCHHH----HHHHHHHHHT
T ss_pred ccCCCHHH----HHHHHHHHHh
Confidence 46799976 5788988865
No 12
>d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=21.57 E-value=20 Score=27.39 Aligned_cols=49 Identities=20% Similarity=0.269 Sum_probs=34.8
Q ss_pred ccceeEEEecCCceEEE---eeeehhhcccCCCCCHHHHHHHHHHHHHHHHhcCch
Q 027728 128 YDVQLIKKFMGRNLLAL---NVMWKYMEQRSFPLTEEEYILRLDDVANTLKCWGAV 180 (219)
Q Consensus 128 YDvqL~r~~~Gk~~lyL---qVMWkyLEQrSFPLtE~EYlehLdaVAe~Ln~wG~~ 180 (219)
+.+.++||.-|.+.||. |+.|-.+. |..+..|....+.|++.|+.+|..
T Consensus 63 ~gi~vvRR~tGGgaV~hd~g~~~~s~i~----~~~~~~~~~~~~~i~~~l~~lgi~ 114 (246)
T d1x2ga2 63 DNVRLARRSSGGGAVFHDLGNTCFTFMA----GKPEYDKTISTSIVLNALNALGVS 114 (246)
T ss_dssp HTCEEEECSSCCCCEEECTTEEEEEEEE----ETTTCCHHHHHHHHHHHHHHTTCC
T ss_pred CCCeEEEEcCCCcEEEeCCCCEEEEEEe----cCchhhHHHHHHHHHHHHHhcCCc
Confidence 44678999778888875 35554443 334445778888999999999875
No 13
>d1ztwa1 e.8.1.2 (A:24-278) MMLV reverse transcriptase {Moloney murine leukemia virus, MoMLV [TaxId: 11801]}
Probab=20.80 E-value=28 Score=27.01 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCc
Q 027728 158 LTEEEYILRLDDVANTLKCWGA 179 (219)
Q Consensus 158 LtE~EYlehLdaVAe~Ln~wG~ 179 (219)
-|++|+++||++|.+.|..+|-
T Consensus 208 ~t~~eh~~~l~~vl~~l~~~gl 229 (255)
T d1ztwa1 208 TSELDCQQGTRALLQTLGNLGY 229 (255)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHHCcC
Confidence 5899999999999999998875
No 14
>d1ceoa_ c.1.8.3 (A:) Endoglucanase CelC {Clostridium thermocellum [TaxId: 1515]}
Probab=20.70 E-value=27 Score=27.10 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=29.0
Q ss_pred CCceEEEeeeehhhcccC--CCCCHHHHHHHHHHHHHHHHhcC
Q 027728 138 GRNLLALNVMWKYMEQRS--FPLTEEEYILRLDDVANTLKCWG 178 (219)
Q Consensus 138 Gk~~lyLqVMWkyLEQrS--FPLtE~EYlehLdaVAe~Ln~wG 178 (219)
|-+.|=|.|-|..++-.. +.++ ++++++|+.+++.+.+-|
T Consensus 41 G~n~vRlpi~~~~~~~~~~~~~~~-~~~~~~ld~~v~~a~~~g 82 (340)
T d1ceoa_ 41 GFDHVRLPFDYPIIESDDNVGEYK-EDGLSYIDRCLEWCKKYN 82 (340)
T ss_dssp TCCEEEEEEEGGGTBCSSSTTCBC-HHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEeecCHHHhccCCCCCccC-HHHHHHHHHHHHHHHHcC
Confidence 344444667788777554 4456 468999999999998877
No 15
>d1chma1 c.55.2.1 (A:2-156) Creatinase {Pseudomonas putida [TaxId: 303]}
Probab=20.50 E-value=38 Score=23.40 Aligned_cols=34 Identities=18% Similarity=0.168 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCch------HHHHHHHHhc
Q 027728 157 PLTEEEYILRLDDVANTLKCWGAV------SHIRNSLAKL 190 (219)
Q Consensus 157 PLtE~EYlehLdaVAe~Ln~wG~~------d~Vr~~L~~T 190 (219)
|+|++||..+++.+.+.|..=|-- ..=..||...
T Consensus 17 ~fs~~E~~~Rl~klr~~m~~~giDalli~~~~ni~YlTGf 56 (155)
T d1chma1 17 TFSAQEYANRQARLRAHLAAENIDAAIFTSYHNINYYSDF 56 (155)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTTCSEEEECSHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCEEEEeccccceeecCc
Confidence 789999999999999999987753 2234667654
Done!