Query 027729
Match_columns 219
No_of_seqs 158 out of 710
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 14:18:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027729.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027729hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 5E-41 1.1E-45 282.7 27.1 203 12-218 6-216 (219)
2 PF07092 DUF1356: Protein of u 99.8 8.4E-19 1.8E-23 147.4 20.1 125 26-151 52-181 (238)
3 PF03168 LEA_2: Late embryogen 99.5 1.3E-13 2.7E-18 101.3 10.3 97 100-200 1-100 (101)
4 smart00769 WHy Water Stress an 99.1 2E-09 4.3E-14 79.9 11.2 85 92-184 12-98 (100)
5 COG5608 LEA14-like dessication 98.4 4.5E-05 9.7E-10 60.4 17.0 107 69-187 31-139 (161)
6 PF12751 Vac7: Vacuolar segreg 97.1 0.0015 3.3E-08 59.0 7.5 62 63-129 321-382 (387)
7 PF14155 DUF4307: Domain of un 94.0 1.1 2.3E-05 33.9 10.2 87 51-152 11-99 (112)
8 PRK05529 cell division protein 84.2 1.3 2.8E-05 38.2 3.8 26 58-85 48-73 (255)
9 PRK10893 lipopolysaccharide ex 71.2 57 0.0012 26.9 11.1 40 47-86 6-56 (192)
10 PF11906 DUF3426: Protein of u 67.8 31 0.00067 26.7 7.2 75 73-149 48-134 (149)
11 KOG0810 SNARE protein Syntaxin 60.2 2.9 6.4E-05 37.0 0.0 27 41-67 264-291 (297)
12 PF07705 CARDB: CARDB; InterP 55.7 66 0.0014 22.3 8.4 52 96-151 20-71 (101)
13 PF11837 DUF3357: Domain of un 54.6 4.1 8.9E-05 30.4 0.0 10 20-29 6-15 (106)
14 PF01708 Gemini_mov: Geminivir 53.0 5.1 0.00011 29.1 0.3 16 1-16 1-16 (91)
15 PF07423 DUF1510: Protein of u 52.1 8.1 0.00018 32.7 1.4 18 53-70 22-39 (217)
16 PF11797 DUF3324: Protein of u 48.1 1.3E+02 0.0028 23.3 11.2 88 69-179 26-115 (140)
17 PRK13159 cytochrome c-type bio 48.0 91 0.002 25.0 6.7 25 108-132 84-109 (155)
18 PF00927 Transglut_C: Transglu 44.8 1.2E+02 0.0025 21.9 6.9 58 93-150 13-75 (107)
19 PF12505 DUF3712: Protein of u 43.2 74 0.0016 24.0 5.4 25 95-119 100-124 (125)
20 PF12734 CYSTM: Cysteine-rich 41.8 20 0.00042 21.6 1.6 9 16-24 1-9 (37)
21 PF11322 DUF3124: Protein of u 41.8 93 0.002 24.0 5.7 51 93-146 21-74 (125)
22 PF06919 Phage_T4_Gp30_7: Phag 40.1 63 0.0014 24.3 4.3 40 105-144 40-80 (121)
23 PF14874 PapD-like: Flagellar- 38.8 1.4E+02 0.003 21.1 7.9 54 94-150 19-72 (102)
24 PHA03240 envelope glycoprotein 36.3 49 0.0011 28.1 3.6 27 4-30 147-174 (258)
25 KOG3950 Gamma/delta sarcoglyca 35.8 19 0.00041 31.1 1.1 40 70-109 71-123 (292)
26 COG5325 t-SNARE complex subuni 33.2 21 0.00046 31.2 1.1 14 37-50 250-263 (283)
27 PF04790 Sarcoglycan_1: Sarcog 32.6 2.7E+02 0.0059 24.2 7.9 16 92-107 83-98 (264)
28 KOG0809 SNARE protein TLG2/Syn 31.9 21 0.00045 31.6 0.8 21 37-57 273-293 (305)
29 PF11027 DUF2615: Protein of u 31.7 21 0.00046 26.6 0.7 20 51-70 57-76 (103)
30 COG2332 CcmE Cytochrome c-type 31.7 1.3E+02 0.0028 24.0 5.2 32 101-132 76-109 (153)
31 PF11739 DctA-YdbH: Dicarboxyl 31.4 2.9E+02 0.0064 22.6 10.0 76 99-187 19-94 (207)
32 PF03100 CcmE: CcmE; InterPro 30.7 1.5E+02 0.0032 22.7 5.4 8 109-116 84-91 (131)
33 PF05399 EVI2A: Ectropic viral 28.9 61 0.0013 27.4 3.0 7 19-25 89-95 (227)
34 COG3121 FimC P pilus assembly 28.1 1.2E+02 0.0025 25.8 4.7 45 99-148 165-209 (235)
35 PF09865 DUF2092: Predicted pe 26.0 4E+02 0.0086 22.4 9.1 38 92-129 36-75 (214)
36 PRK13254 cytochrome c-type bio 25.9 1.6E+02 0.0034 23.3 4.8 24 109-132 84-108 (148)
37 PF11857 DUF3377: Domain of un 25.8 57 0.0012 22.8 2.0 18 51-68 39-56 (74)
38 PF09624 DUF2393: Protein of u 24.2 3.3E+02 0.0072 20.9 7.0 35 96-130 63-97 (149)
39 PRK11578 macrolide transporter 24.0 4.8E+02 0.01 23.2 8.3 36 47-83 9-46 (370)
40 PF10814 DUF2562: Protein of u 22.8 62 0.0014 25.0 1.9 21 46-66 90-112 (133)
41 TIGR02588 conserved hypothetic 22.0 3.7E+02 0.0081 20.6 9.1 41 58-107 21-61 (122)
42 PF12911 OppC_N: N-terminal TM 21.8 36 0.00078 21.7 0.4 22 51-72 23-44 (56)
43 PF11623 DUF3252: Protein of u 21.6 63 0.0014 21.0 1.4 26 99-124 6-38 (53)
44 PF05545 FixQ: Cbb3-type cytoc 20.4 44 0.00094 21.0 0.5 20 51-70 15-34 (49)
45 PF01611 Filo_glycop: Filoviru 20.3 81 0.0017 28.3 2.3 34 99-132 125-167 (364)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=5e-41 Score=282.68 Aligned_cols=203 Identities=19% Similarity=0.315 Sum_probs=167.0
Q ss_pred CCCCCCCCccccCCCCCCCCcEEEeecccccCCccchhh-----hHHHHHHHHHhheeEEecCCCeEEEEeEEEeeEEeC
Q 027729 12 PATPSQPHYYTVLPPQPQDENYTILPYYYLENPRRNWYA-----TIAISLILLAALLYVFWPSEPELKIERLHLAHFHVR 86 (219)
Q Consensus 12 ~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~r~~~~~~~~-----~v~i~i~~~~l~~~vl~P~~P~~~v~~~~l~~~~~~ 86 (219)
|+.|.+|+..+.+++..+ ..-.++.+||+++++|++ ++++++++++++|++||||+|+|+++++++++|+++
T Consensus 6 ~~~p~a~~~~~~~~d~~~---~~~~~~~~~r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~ 82 (219)
T PLN03160 6 QVRPLAPAAFRLRSDEEE---ATNHLKKTRRRNCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELI 82 (219)
T ss_pred cCCCCCCCcccccCchhh---cCcchhccccccceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeec
Confidence 566777777776665422 111133333333322322 233344456677889999999999999999999986
Q ss_pred C--CCCceEEEEEEEEEEEECCCceEEEEcCeEEEEEECCEEEeeeeeCCeeecCcceEEEEeeeEEeeeeeccchHHHH
Q 027729 87 M--KPAICIDISLNVTLKVHNRDVYSVNYKSLDVSVGYRGRKLGHVKSNHGRVKALASSFIDAELQLKCVKVLSDVVYLL 164 (219)
Q Consensus 87 ~--~~~~~l~~~~~~~l~v~NPN~~~i~y~~~~~~v~Y~g~~vG~~~v~~~~~~a~~~~~v~~~v~~~~~~v~~~~~~L~ 164 (219)
+ .++..+|++++++|+++|||+++|+|+++++.++|+|+.+|++.+|+|+|++++++.+++++.+.+.++.++ .+|.
T Consensus 83 ~~~~~~~~~n~tl~~~v~v~NPN~~~~~Y~~~~~~v~Y~g~~vG~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~~-~~L~ 161 (219)
T PLN03160 83 NNTTLRPGTNITLIADVSVKNPNVASFKYSNTTTTIYYGGTVVGEARTPPGKAKARRTMRMNVTVDIIPDKILSV-PGLL 161 (219)
T ss_pred cCCCCceeEEEEEEEEEEEECCCceeEEEcCeEEEEEECCEEEEEEEcCCcccCCCCeEEEEEEEEEEeceeccc-hhHH
Confidence 4 234578999999999999999999999999999999999999999999999999999999999999888765 7899
Q ss_pred HhhcCCeeeEEEEEEEEEEEEEE-EEeeceEEEEEEEEEEecCCceeeccccccC
Q 027729 165 EDLARGTVPFDTITKVTGHLGLF-FLEFPLEARVSCEVLINTTSQTIARQNCYPK 218 (219)
Q Consensus 165 ~D~~~G~v~l~~~~~v~g~v~~~-~~~~~~~~~v~C~v~v~~~~~~i~~~~C~~k 218 (219)
+|+++|.++|+++++++|||+++ +++++++++++|++.|+..++.+.+++|+++
T Consensus 162 ~D~~~G~v~l~~~~~v~gkVkv~~i~k~~v~~~v~C~v~V~~~~~~i~~~~C~~~ 216 (219)
T PLN03160 162 TDISSGLLNMNSYTRIGGKVKILKIIKKHVVVKMNCTMTVNITSQAIQGQKCKRH 216 (219)
T ss_pred HHhhCCeEEEEEEEEEEEEEEEEEEEEEEEEEEEEeEEEEECCCCEEeccEeccc
Confidence 99999999999999999999999 6688999999999999999999999999976
No 2
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=99.83 E-value=8.4e-19 Score=147.43 Aligned_cols=125 Identities=14% Similarity=0.296 Sum_probs=112.7
Q ss_pred CCCCCCcEEEeecccccCCccc--hhh--hHHHHHHHHHhheeEEecCCCeEEEEeEEEeeEEeCCCCCceEEEEEEEEE
Q 027729 26 PQPQDENYTILPYYYLENPRRN--WYA--TIAISLILLAALLYVFWPSEPELKIERLHLAHFHVRMKPAICIDISLNVTL 101 (219)
Q Consensus 26 ~~~~~~~~~~~p~~~~r~~~~~--~~~--~v~i~i~~~~l~~~vl~P~~P~~~v~~~~l~~~~~~~~~~~~l~~~~~~~l 101 (219)
--||+|+||||||+|||+++|| +++ .|++|+++.+|++|+|+||...++-.+++...+.++... ..+.++++..|
T Consensus 52 ~eqe~qLVALIPy~DqRLKPrRTklyV~~sV~~CLl~~~L~iFFLfPRsV~v~~~gv~s~~V~f~~~~-~~v~l~itn~l 130 (238)
T PF07092_consen 52 REQENQLVALIPYSDQRLKPRRTKLYVFLSVLLCLLLSGLVIFFLFPRSVTVSPVGVKSVTVSFNPDK-STVQLNITNTL 130 (238)
T ss_pred ccchhcEEEEEeccccccCCceeEEEeeHHHHHHHHHHHheEEEEeCcEEEEecCcEEEEEEEEeCCC-CEEEEEEEEEE
Confidence 4599999999999999999999 555 788999999999999999999999999999988887543 36899999999
Q ss_pred EEECCCceEEEEcCeEEEEEECCEEEeeeeeCCe-eecCcceEEEEeeeEE
Q 027729 102 KVHNRDVYSVNYKSLDVSVGYRGRKLGHVKSNHG-RVKALASSFIDAELQL 151 (219)
Q Consensus 102 ~v~NPN~~~i~y~~~~~~v~Y~g~~vG~~~v~~~-~~~a~~~~~v~~~v~~ 151 (219)
+++|+|++++...++++++.|....+|++..... .+++++.+++.+++..
T Consensus 131 NIsN~NFy~V~Vt~~s~qv~~~~~VVG~~~~~~~~~I~Prs~~q~~~tV~t 181 (238)
T PF07092_consen 131 NISNPNFYPVTVTNLSIQVLYMKTVVGKGKNSNITVIGPRSSKQVNYTVKT 181 (238)
T ss_pred EccCCCEEEEEEEeEEEEEEEEEeEEeeeEecceEEecccCCceEEEEeeE
Confidence 9999999999999999999999999999988766 9999999998887654
No 3
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.52 E-value=1.3e-13 Score=101.28 Aligned_cols=97 Identities=25% Similarity=0.388 Sum_probs=75.8
Q ss_pred EEEEECCCceEEEEcCeEEEEEECCEEEe-eeeeCCeeecCcceEEEEeeeEEeeeeeccchHHHHHhhcCCeeeEEEEE
Q 027729 100 TLKVHNRDVYSVNYKSLDVSVGYRGRKLG-HVKSNHGRVKALASSFIDAELQLKCVKVLSDVVYLLEDLARGTVPFDTIT 178 (219)
Q Consensus 100 ~l~v~NPN~~~i~y~~~~~~v~Y~g~~vG-~~~v~~~~~~a~~~~~v~~~v~~~~~~v~~~~~~L~~D~~~G~v~l~~~~ 178 (219)
+|+++|||.++++|++++++++|+|+.+| ....++|.|++++++.+..++.++...+ ...+.++. +|..++++.+
T Consensus 1 ~l~v~NPN~~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l---~~~l~~~~-~~~~~~~v~~ 76 (101)
T PF03168_consen 1 TLSVRNPNSFGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDL---PRLLKDLL-AGRVPFDVTY 76 (101)
T ss_dssp EEEEEESSSS-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHH---HHHHHHHH-HTTSCEEEEE
T ss_pred CEEEECCCceeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHH---HHHHHhhh-ccccceEEEE
Confidence 58999999999999999999999999999 6678999999999999998888777665 24555556 6778888888
Q ss_pred EEEEEEEE-E-EEeeceEEEEEEE
Q 027729 179 KVTGHLGL-F-FLEFPLEARVSCE 200 (219)
Q Consensus 179 ~v~g~v~~-~-~~~~~~~~~v~C~ 200 (219)
+++|++++ + .+..+..+.++|+
T Consensus 77 ~~~g~~~v~~~~~~~~~~v~~~~~ 100 (101)
T PF03168_consen 77 RIRGTFKVLGTPIFGSVRVPVSCE 100 (101)
T ss_dssp EEEEEEE-EE-TTTSCEEEEEEEE
T ss_pred EEEEEEEEcccceeeeEEEeEEeE
Confidence 99999995 3 2334555555553
No 4
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=99.08 E-value=2e-09 Score=79.87 Aligned_cols=85 Identities=19% Similarity=0.414 Sum_probs=69.9
Q ss_pred eEEEEEEEEEEEECCCceEEEEcCeEEEEEECCEEEeeeeeC-CeeecCcceEEEEeeeEEeeeeeccchHHHHHhhcCC
Q 027729 92 CIDISLNVTLKVHNRDVYSVNYKSLDVSVGYRGRKLGHVKSN-HGRVKALASSFIDAELQLKCVKVLSDVVYLLEDLARG 170 (219)
Q Consensus 92 ~l~~~~~~~l~v~NPN~~~i~y~~~~~~v~Y~g~~vG~~~v~-~~~~~a~~~~~v~~~v~~~~~~v~~~~~~L~~D~~~G 170 (219)
..+.++.+.+++.|||.+++.+++++.+++|+|..+|++..+ .+.+++++++.+.+++++. ... ...+..++.+|
T Consensus 12 ~~~~~~~l~l~v~NPN~~~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~-~~~---~~~~~~~l~~~ 87 (100)
T smart00769 12 GLEIEIVLKVKVQNPNPFPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTVN-LFL---AEALIWHIANG 87 (100)
T ss_pred ceEEEEEEEEEEECCCCCccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEee-hhH---hHHHHHhhccC
Confidence 578889999999999999999999999999999999999985 7899999999999999884 222 35667777766
Q ss_pred e-eeEEEEEEEEEEE
Q 027729 171 T-VPFDTITKVTGHL 184 (219)
Q Consensus 171 ~-v~l~~~~~v~g~v 184 (219)
. +++ ++.|++
T Consensus 88 ~~~~y----~l~g~l 98 (100)
T smart00769 88 EEIPY----RLDGKL 98 (100)
T ss_pred CCccE----EEEEEE
Confidence 4 333 455554
No 5
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=98.43 E-value=4.5e-05 Score=60.35 Aligned_cols=107 Identities=15% Similarity=0.231 Sum_probs=78.0
Q ss_pred CCCeEEEEeEEEeeEEeCCCCCceEEEEEEEEEEEECCCceEEEEcCeEEEEEECCEEEeeeee-CCeeecCcceEEEEe
Q 027729 69 SEPELKIERLHLAHFHVRMKPAICIDISLNVTLKVHNRDVYSVNYKSLDVSVGYRGRKLGHVKS-NHGRVKALASSFIDA 147 (219)
Q Consensus 69 ~~P~~~v~~~~l~~~~~~~~~~~~l~~~~~~~l~v~NPN~~~i~y~~~~~~v~Y~g~~vG~~~v-~~~~~~a~~~~~v~~ 147 (219)
++|.+.--.+..-.+.- ....+-.+++++|||-+++-..++...++-+|..+|++.. .++.+++++..++++
T Consensus 31 ~~p~ve~~ka~wGkvt~-------s~~EiV~t~KiyNPN~fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tvdv 103 (161)
T COG5608 31 KKPGVESMKAKWGKVTN-------SETEIVGTLKIYNPNPFPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETVDV 103 (161)
T ss_pred CCCCceEEEEEEEEEec-------cceEEEEEEEecCCCCcceeeeceEEEEEEcceEeeccccccceEECCCCeEEEEE
Confidence 46665544444444332 3345778999999999999999999999999999999985 668999999999999
Q ss_pred eeEEeeeeeccchHHHHHhhcCCee-eEEEEEEEEEEEEEE
Q 027729 148 ELQLKCVKVLSDVVYLLEDLARGTV-PFDTITKVTGHLGLF 187 (219)
Q Consensus 148 ~v~~~~~~v~~~~~~L~~D~~~G~v-~l~~~~~v~g~v~~~ 187 (219)
++.++-.++ ...+...+++|+- ++. +++.|.++++
T Consensus 104 ~l~~d~~~~---ke~w~~hi~ngErs~Ir--~~i~~~v~vg 139 (161)
T COG5608 104 PLRLDNSKI---KEWWVTHIENGERSTIR--VRIKGVVKVG 139 (161)
T ss_pred EEEEehHHH---HHHHHHHhhccCcccEE--EEEEEEEEEc
Confidence 998876665 2345567777763 343 3444555554
No 6
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=97.15 E-value=0.0015 Score=58.98 Aligned_cols=62 Identities=15% Similarity=0.345 Sum_probs=43.8
Q ss_pred eeEEecCCCeEEEEeEEEeeEEeCCCCCceEEEEEEEEEEEECCCceEEEEcCeEEEEEECCEEEee
Q 027729 63 LYVFWPSEPELKIERLHLAHFHVRMKPAICIDISLNVTLKVHNRDVYSVNYKSLDVSVGYRGRKLGH 129 (219)
Q Consensus 63 ~~vl~P~~P~~~v~~~~l~~~~~~~~~~~~l~~~~~~~l~v~NPN~~~i~y~~~~~~v~Y~g~~vG~ 129 (219)
.|+|---.|--.|.=+.+.++-.+ .-.+-|+++|.+.|||.+.|..++.++.||-+-.-+|.
T Consensus 321 gFv~AttKpL~~v~v~~I~NVlaS-----~qELmfdl~V~A~NPn~~~V~I~d~dldIFAKS~yvg~ 382 (387)
T PF12751_consen 321 GFVFATTKPLTDVQVVSIQNVLAS-----EQELMFDLTVEAFNPNWFTVTIDDMDLDIFAKSRYVGT 382 (387)
T ss_pred HhhhhcCcccccceEEEeeeeeec-----cceEEEeeEEEEECCCeEEEEeccceeeeEecCCccCc
Confidence 355555555555555555555432 34556889999999999999999999999877665553
No 7
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=94.02 E-value=1.1 Score=33.91 Aligned_cols=87 Identities=10% Similarity=0.219 Sum_probs=41.6
Q ss_pred hHHHHHHHHHhheeEEe-cCCCeEEEEeEEEeeEEeCCCCCceEEEEEEEEEEEECCCc-eEEEEcCeEEEEEECCEEEe
Q 027729 51 TIAISLILLAALLYVFW-PSEPELKIERLHLAHFHVRMKPAICIDISLNVTLKVHNRDV-YSVNYKSLDVSVGYRGRKLG 128 (219)
Q Consensus 51 ~v~i~i~~~~l~~~vl~-P~~P~~~v~~~~l~~~~~~~~~~~~l~~~~~~~l~v~NPN~-~~i~y~~~~~~v~Y~g~~vG 128 (219)
.+++++++++++|+.+. -..+++ +.+..+|+..++. .++++|+++- +|.. ..=... ...|++.++|
T Consensus 11 ~v~~vv~~~~~~w~~~~~~~~~~v---~~~~~gf~vv~d~--~v~v~f~Vtr---~~~~~a~C~Vr----A~~~d~aeVG 78 (112)
T PF14155_consen 11 AVLVVVAGAVVAWFGYSQFGSPPV---SAEVIGFEVVDDS--TVEVTFDVTR---DPGRPAVCIVR----ALDYDGAEVG 78 (112)
T ss_pred HHHHHHHHHHHhHhhhhhccCCCc---eEEEEEEEECCCC--EEEEEEEEEE---CCCCCEEEEEE----EEeCCCCEEE
Confidence 44455555556665553 556665 4445555554332 4555444432 2442 111111 1247788888
Q ss_pred eeeeCCeeecCcceEEEEeeeEEe
Q 027729 129 HVKSNHGRVKALASSFIDAELQLK 152 (219)
Q Consensus 129 ~~~v~~~~~~a~~~~~v~~~v~~~ 152 (219)
.-.+ .+|+.+...+..++.+.
T Consensus 79 rreV---~vp~~~~~~~~~~v~v~ 99 (112)
T PF14155_consen 79 RREV---LVPPSGERTVRVTVTVR 99 (112)
T ss_pred EEEE---EECCCCCcEEEEEEEEE
Confidence 7543 24444444444444433
No 8
>PRK05529 cell division protein FtsQ; Provisional
Probab=84.25 E-value=1.3 Score=38.22 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=17.1
Q ss_pred HHHhheeEEecCCCeEEEEeEEEeeEEe
Q 027729 58 LLAALLYVFWPSEPELKIERLHLAHFHV 85 (219)
Q Consensus 58 ~~~l~~~vl~P~~P~~~v~~~~l~~~~~ 85 (219)
++++++++|+ .|.|.+..+++++-..
T Consensus 48 l~~l~~~~~~--Sp~~~v~~I~V~Gn~~ 73 (255)
T PRK05529 48 LLLFVMLSAY--SPLLALRSIEVAGNMR 73 (255)
T ss_pred HHHHHHHhee--CCceEEEEEEEECCcc
Confidence 3333334443 7999999999986553
No 9
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=71.22 E-value=57 Score=26.86 Aligned_cols=40 Identities=8% Similarity=0.160 Sum_probs=27.3
Q ss_pred chhhhHHHHHHHHHhheeEE-----------ecCCCeEEEEeEEEeeEEeC
Q 027729 47 NWYATIAISLILLAALLYVF-----------WPSEPELKIERLHLAHFHVR 86 (219)
Q Consensus 47 ~~~~~v~i~i~~~~l~~~vl-----------~P~~P~~~v~~~~l~~~~~~ 86 (219)
+|.++++.+++++.++|++. .++.|+|...+++...++-+
T Consensus 6 ~~~~~il~~~~l~l~~W~l~~~~~~~~~~~~~~~~Pdy~~~~~~~~~yd~~ 56 (192)
T PRK10893 6 RWVIILLALIALVLIGWNLADKDEDTAPVVVNNNDPTYQSQHTDTVVYNPE 56 (192)
T ss_pred HHHHHHHHHHHHHHHHhhccCCccccccccCCCCCCCEEEeccEEEEECCC
Confidence 45565555555555555432 46789999999999988764
No 10
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=67.77 E-value=31 Score=26.66 Aligned_cols=75 Identities=19% Similarity=0.147 Sum_probs=49.0
Q ss_pred EEEEeEEEeeEEeCCCCCceEEEEEEEEEEEECCCceEEEEcCeEEEEE-ECCEEEeeeee-C----------CeeecCc
Q 027729 73 LKIERLHLAHFHVRMKPAICIDISLNVTLKVHNRDVYSVNYKSLDVSVG-YRGRKLGHVKS-N----------HGRVKAL 140 (219)
Q Consensus 73 ~~v~~~~l~~~~~~~~~~~~l~~~~~~~l~v~NPN~~~i~y~~~~~~v~-Y~g~~vG~~~v-~----------~~~~~a~ 140 (219)
-.+..+++.+..+...+ .-+--+.++.+++|.......|-.+.+++. -+|+.+.+-.+ | ...++++
T Consensus 48 ~~~~~l~i~~~~~~~~~--~~~~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg 125 (149)
T PF11906_consen 48 RDIDALKIESSDLRPVP--DGPGVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPG 125 (149)
T ss_pred cCcceEEEeeeeEEeec--CCCCEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCC
Confidence 35556666554443221 112236678899999999999999999997 67888887665 3 2355556
Q ss_pred ceEEEEeee
Q 027729 141 ASSFIDAEL 149 (219)
Q Consensus 141 ~~~~v~~~v 149 (219)
++..+..++
T Consensus 126 ~~~~~~~~~ 134 (149)
T PF11906_consen 126 ESVPFRLRL 134 (149)
T ss_pred CeEEEEEEe
Confidence 665555444
No 11
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.16 E-value=2.9 Score=36.98 Aligned_cols=27 Identities=11% Similarity=0.226 Sum_probs=13.2
Q ss_pred ccCCccc-hhhhHHHHHHHHHhheeEEe
Q 027729 41 LENPRRN-WYATIAISLILLAALLYVFW 67 (219)
Q Consensus 41 ~r~~~~~-~~~~v~i~i~~~~l~~~vl~ 67 (219)
||+.|+. |+|++.++|+++++++++..
T Consensus 264 qkkaRK~k~i~ii~~iii~~v~v~~i~~ 291 (297)
T KOG0810|consen 264 QKKARKWKIIIIIILIIIIVVLVVVIVV 291 (297)
T ss_pred HHHhhhceeeeehHHHHHHHHHhhhhcc
Confidence 4444444 66655555555444444443
No 12
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=55.68 E-value=66 Score=22.25 Aligned_cols=52 Identities=13% Similarity=0.150 Sum_probs=32.3
Q ss_pred EEEEEEEEECCCceEEEEcCeEEEEEECCEEEeeeeeCCeeecCcceEEEEeeeEE
Q 027729 96 SLNVTLKVHNRDVYSVNYKSLDVSVGYRGRKLGHVKSNHGRVKALASSFIDAELQL 151 (219)
Q Consensus 96 ~~~~~l~v~NPN~~~i~y~~~~~~v~Y~g~~vG~~~v~~~~~~a~~~~~v~~~v~~ 151 (219)
.+.++++|+|.-... -++..+.++.+|..++...+ ..+++.++..+.+++..
T Consensus 20 ~~~i~~~V~N~G~~~--~~~~~v~~~~~~~~~~~~~i--~~L~~g~~~~v~~~~~~ 71 (101)
T PF07705_consen 20 PVTITVTVKNNGTAD--AENVTVRLYLDGNSVSTVTI--PSLAPGESETVTFTWTP 71 (101)
T ss_dssp EEEEEEEEEE-SSS---BEEEEEEEEETTEEEEEEEE--SEB-TTEEEEEEEEEE-
T ss_pred EEEEEEEEEECCCCC--CCCEEEEEEECCceeccEEE--CCcCCCcEEEEEEEEEe
Confidence 356677889875433 34567778888888877666 34566667766655544
No 13
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=54.57 E-value=4.1 Score=30.42 Aligned_cols=10 Identities=40% Similarity=0.660 Sum_probs=0.0
Q ss_pred ccccCCCCCC
Q 027729 20 YYTVLPPQPQ 29 (219)
Q Consensus 20 ~~~~~~~~~~ 29 (219)
-|+|.|++.+
T Consensus 6 sY~PLP~~~~ 15 (106)
T PF11837_consen 6 SYTPLPDSSE 15 (106)
T ss_dssp ----------
T ss_pred ccCCCCCCCc
Confidence 3888776533
No 14
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=53.00 E-value=5.1 Score=29.09 Aligned_cols=16 Identities=25% Similarity=0.179 Sum_probs=10.9
Q ss_pred CCCCCCCCCCCCCCCC
Q 027729 1 MAPSKTTSPLPPATPS 16 (219)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (219)
|.++|-++++++...+
T Consensus 1 M~~~~~~~~~~~~~~~ 16 (91)
T PF01708_consen 1 MDSAKYQPFPSPQNYS 16 (91)
T ss_pred CCcccccCCCCccccc
Confidence 7778888777655543
No 15
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=52.14 E-value=8.1 Score=32.66 Aligned_cols=18 Identities=17% Similarity=0.504 Sum_probs=9.2
Q ss_pred HHHHHHHHhheeEEecCC
Q 027729 53 AISLILLAALLYVFWPSE 70 (219)
Q Consensus 53 ~i~i~~~~l~~~vl~P~~ 70 (219)
+.+||++++++.+|.+.+
T Consensus 22 IV~lLIiiva~~lf~~~~ 39 (217)
T PF07423_consen 22 IVSLLIIIVAYQLFFGGD 39 (217)
T ss_pred HHHHHHHHHhhhheecCC
Confidence 333444555566666543
No 16
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=48.13 E-value=1.3e+02 Score=23.28 Aligned_cols=88 Identities=15% Similarity=0.191 Sum_probs=58.1
Q ss_pred CCCeEEEEeEEEeeEEeCCCCCceEEEEEEEEEEEECCCceEEEEcCeEEEEEECC--EEEeeeeeCCeeecCcceEEEE
Q 027729 69 SEPELKIERLHLAHFHVRMKPAICIDISLNVTLKVHNRDVYSVNYKSLDVSVGYRG--RKLGHVKSNHGRVKALASSFID 146 (219)
Q Consensus 69 ~~P~~~v~~~~l~~~~~~~~~~~~l~~~~~~~l~v~NPN~~~i~y~~~~~~v~Y~g--~~vG~~~v~~~~~~a~~~~~v~ 146 (219)
-.|++.+.++.+...+. .-.+.++++||.-.-+.=-.+++.|+..| ..+.+....++.+.+.+.-.+
T Consensus 26 ~~p~L~l~~v~~~~~n~----------~~~i~~~l~N~~~~~l~~~~v~a~V~~~~~~k~~~~~~~~~~~mAPNS~f~~- 94 (140)
T PF11797_consen 26 VPPKLKLGKVKPGQING----------RNVIQANLQNPQPAILKKLTVDAKVTKKGSKKVLYTFKKENMQMAPNSNFNF- 94 (140)
T ss_pred cCcccEEeeeeeeEECC----------eeEEEEEEECCCchhhcCcEEEEEEEECCCCeEEEEeeccCCEECCCCeEEe-
Confidence 35666666666655443 23466789999976666667788888877 478888888999999876654
Q ss_pred eeeEEeeeeeccchHHHHHhhcCCeeeEEEEEE
Q 027729 147 AELQLKCVKVLSDVVYLLEDLARGTVPFDTITK 179 (219)
Q Consensus 147 ~~v~~~~~~v~~~~~~L~~D~~~G~v~l~~~~~ 179 (219)
.+.+.+.++ ..|...+++.++
T Consensus 95 -~i~~~~~~l-----------k~G~Y~l~~~~~ 115 (140)
T PF11797_consen 95 -PIPLGGKKL-----------KPGKYTLKITAK 115 (140)
T ss_pred -EecCCCcCc-----------cCCEEEEEEEEE
Confidence 333343333 568766665443
No 17
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=47.99 E-value=91 Score=24.99 Aligned_cols=25 Identities=8% Similarity=0.078 Sum_probs=13.9
Q ss_pred ceEEEEcCeEEEEEECCE-EEeeeee
Q 027729 108 VYSVNYKSLDVSVGYRGR-KLGHVKS 132 (219)
Q Consensus 108 ~~~i~y~~~~~~v~Y~g~-~vG~~~v 132 (219)
.+.+.|+++-=+++=.|+ .|.++..
T Consensus 84 ~v~V~Y~GilPDlFrEGqgVVaeG~~ 109 (155)
T PRK13159 84 ATQVEYTGILPDLFRDNQSVIANGRM 109 (155)
T ss_pred EEEEEEccCCCccccCCCeEEEEEEE
Confidence 466666666555554453 4555554
No 18
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=44.75 E-value=1.2e+02 Score=21.92 Aligned_cols=58 Identities=12% Similarity=0.170 Sum_probs=36.1
Q ss_pred EEEEEEEEEEEECCCceE---EEEcCeEEEEEECCEEEee--eeeCCeeecCcceEEEEeeeE
Q 027729 93 IDISLNVTLKVHNRDVYS---VNYKSLDVSVGYRGRKLGH--VKSNHGRVKALASSFIDAELQ 150 (219)
Q Consensus 93 l~~~~~~~l~v~NPN~~~---i~y~~~~~~v~Y~g~~vG~--~~v~~~~~~a~~~~~v~~~v~ 150 (219)
+.-.+.+.++++||-... +...=....+.|.|..... -......++++++..+..++.
T Consensus 13 vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~ 75 (107)
T PF00927_consen 13 VGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTIT 75 (107)
T ss_dssp TTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-
T ss_pred CCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEE
Confidence 334578889999997433 3333355667899976533 345666889998888766553
No 19
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=43.17 E-value=74 Score=23.95 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=19.7
Q ss_pred EEEEEEEEEECCCceEEEEcCeEEE
Q 027729 95 ISLNVTLKVHNRDVYSVNYKSLDVS 119 (219)
Q Consensus 95 ~~~~~~l~v~NPN~~~i~y~~~~~~ 119 (219)
.++..++.+.||-.+++..++++..
T Consensus 100 ~~~~~~~~l~NPS~~ti~lG~v~~~ 124 (125)
T PF12505_consen 100 INLNATVTLPNPSPLTIDLGNVTLN 124 (125)
T ss_pred EEEEEEEEEcCCCeEEEEeccEEEe
Confidence 4467778889999899988887765
No 20
>PF12734 CYSTM: Cysteine-rich TM module stress tolerance
Probab=41.84 E-value=20 Score=21.60 Aligned_cols=9 Identities=22% Similarity=0.279 Sum_probs=4.4
Q ss_pred CCCCccccC
Q 027729 16 SQPHYYTVL 24 (219)
Q Consensus 16 ~~p~~~~~~ 24 (219)
|||++|.++
T Consensus 1 ppp~~Y~~~ 9 (37)
T PF12734_consen 1 PPPPGYPQQ 9 (37)
T ss_pred CcCCCCCCC
Confidence 345555553
No 21
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=41.83 E-value=93 Score=24.04 Aligned_cols=51 Identities=24% Similarity=0.265 Sum_probs=34.8
Q ss_pred EEEEEEEEEEEECCC-ceEEEEcCeEEEEEE--CCEEEeeeeeCCeeecCcceEEEE
Q 027729 93 IDISLNVTLKVHNRD-VYSVNYKSLDVSVGY--RGRKLGHVKSNHGRVKALASSFID 146 (219)
Q Consensus 93 l~~~~~~~l~v~NPN-~~~i~y~~~~~~v~Y--~g~~vG~~~v~~~~~~a~~~~~v~ 146 (219)
...+|+++|++||.+ .-++....++ +| +|..|-..--.+..+++.++..+-
T Consensus 21 ~~~~Lt~tLSiRNtd~~~~i~i~~v~---Yydt~G~lvr~yl~~Pi~L~Pl~t~~~v 74 (125)
T PF11322_consen 21 RPFNLTATLSIRNTDPTDPIYITSVD---YYDTDGKLVRSYLDKPIYLKPLATTEFV 74 (125)
T ss_pred ceEeEEEEEEEEcCCCCCCEEEEEEE---EECCCCeEhHHhcCCCeEcCCCceEEEE
Confidence 455678999999988 4555443332 24 356666666678889999888764
No 22
>PF06919 Phage_T4_Gp30_7: Phage Gp30.7 protein; InterPro: IPR009690 This family consists of several phage Gp30.7 proteins of 121 residues in length. Family members seem to be exclusively from the T4-like viruses. The function of this family is unknown.
Probab=40.07 E-value=63 Score=24.25 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=30.5
Q ss_pred CCCceEEEEc-CeEEEEEECCEEEeeeeeCCeeecCcceEE
Q 027729 105 NRDVYSVNYK-SLDVSVGYRGRKLGHVKSNHGRVKALASSF 144 (219)
Q Consensus 105 NPN~~~i~y~-~~~~~v~Y~g~~vG~~~v~~~~~~a~~~~~ 144 (219)
|||++-+.|+ ++++++.|.|..+--+.-..++++-.++..
T Consensus 40 ~pNYvf~~FEnG~tvsv~~~gs~~kI~~~Dd~r~RDLgTHP 80 (121)
T PF06919_consen 40 TPNYVFMRFENGITVSVTYNGSIFKIGLDDDHRERDLGTHP 80 (121)
T ss_pred CCCEEEEEecCCCEEEEEecCcEEEEEecCchhhcccCCCc
Confidence 9999888885 689999999987776666666666555543
No 23
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=38.76 E-value=1.4e+02 Score=21.08 Aligned_cols=54 Identities=9% Similarity=0.100 Sum_probs=28.7
Q ss_pred EEEEEEEEEEECCCceEEEEcCeEEEEEECCEEEeeeeeCCeeecCcceEEEEeeeE
Q 027729 94 DISLNVTLKVHNRDVYSVNYKSLDVSVGYRGRKLGHVKSNHGRVKALASSFIDAELQ 150 (219)
Q Consensus 94 ~~~~~~~l~v~NPN~~~i~y~~~~~~v~Y~g~~vG~~~v~~~~~~a~~~~~v~~~v~ 150 (219)
.-....+++++|--....+|.=..-. ..+..+ ...-..+.+.++.+..+.+++.
T Consensus 19 g~~~~~~v~l~N~s~~p~~f~v~~~~--~~~~~~-~v~~~~g~l~PG~~~~~~V~~~ 72 (102)
T PF14874_consen 19 GQTYSRTVTLTNTSSIPARFRVRQPE--SLSSFF-SVEPPSGFLAPGESVELEVTFS 72 (102)
T ss_pred CCEEEEEEEEEECCCCCEEEEEEeCC--cCCCCE-EEECCCCEECCCCEEEEEEEEE
Confidence 33456788899987544444310000 011111 2223456788888888776654
No 24
>PHA03240 envelope glycoprotein M; Provisional
Probab=36.29 E-value=49 Score=28.07 Aligned_cols=27 Identities=30% Similarity=0.129 Sum_probs=16.2
Q ss_pred CCCCCCCCCCCC-CCCCccccCCCCCCC
Q 027729 4 SKTTSPLPPATP-SQPHYYTVLPPQPQD 30 (219)
Q Consensus 4 ~~~~~~~~~~~~-~~p~~~~~~~~~~~~ 30 (219)
+|||+.-|...| +|-.--+|+.+.|..
T Consensus 147 skTTtkKP~~~pt~~~l~~~p~~ht~~~ 174 (258)
T PHA03240 147 SKTTSKKPEQGPTLLRLKTTPNKHTQHK 174 (258)
T ss_pred hcccccCCCCCCCchhhccCcchhhhcc
Confidence 688887774444 555666665554433
No 25
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=35.81 E-value=19 Score=31.10 Aligned_cols=40 Identities=13% Similarity=0.147 Sum_probs=25.5
Q ss_pred CCeEEEEeEEEeeEEe----------CC--CCCceEEEEEEEEEEEECCC-ce
Q 027729 70 EPELKIERLHLAHFHV----------RM--KPAICIDISLNVTLKVHNRD-VY 109 (219)
Q Consensus 70 ~P~~~v~~~~l~~~~~----------~~--~~~~~l~~~~~~~l~v~NPN-~~ 109 (219)
.-+++-.++++.+-+- .+ .....+...=++++++|||| .+
T Consensus 71 ~Lkit~~GirleG~sefl~pl~akei~Sr~~~~l~~~S~rnvtvnarn~~g~v 123 (292)
T KOG3950|consen 71 NLKITKKGIRLEGDSEFLQPLYAKEIHSRPGSPLYLQSARNVTVNARNPNGKV 123 (292)
T ss_pred ceEEccCcEEEechhhhhhhhhhhhhhcCCCCceEEEeccCeeEEccCCCCce
Confidence 3556666777765331 11 22346777788999999999 54
No 26
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=33.24 E-value=21 Score=31.23 Aligned_cols=14 Identities=14% Similarity=0.254 Sum_probs=8.2
Q ss_pred ecccccCCccchhh
Q 027729 37 PYYYLENPRRNWYA 50 (219)
Q Consensus 37 p~~~~r~~~~~~~~ 50 (219)
|.+.||.++|+.||
T Consensus 250 ~~hqrrt~k~~~~~ 263 (283)
T COG5325 250 PAHQRRTKKCRFYL 263 (283)
T ss_pred HHHHhhhccchhhH
Confidence 45555556666666
No 27
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=32.65 E-value=2.7e+02 Score=24.18 Aligned_cols=16 Identities=44% Similarity=0.515 Sum_probs=10.8
Q ss_pred eEEEEEEEEEEEECCC
Q 027729 92 CIDISLNVTLKVHNRD 107 (219)
Q Consensus 92 ~l~~~~~~~l~v~NPN 107 (219)
.+..+=+++++++|.|
T Consensus 83 ~i~s~~~v~~~~r~~~ 98 (264)
T PF04790_consen 83 VIQSSRNVTLNARNEN 98 (264)
T ss_pred EEEecCceEEEEecCC
Confidence 4555556777888887
No 28
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.86 E-value=21 Score=31.59 Aligned_cols=21 Identities=14% Similarity=0.206 Sum_probs=10.9
Q ss_pred ecccccCCccchhhhHHHHHH
Q 027729 37 PYYYLENPRRNWYATIAISLI 57 (219)
Q Consensus 37 p~~~~r~~~~~~~~~v~i~i~ 57 (219)
+.|.+|.+.++|+|+++++++
T Consensus 273 e~yQk~~~k~~~i~~L~l~ii 293 (305)
T KOG0809|consen 273 ERYQKRNKKMKVILMLTLLII 293 (305)
T ss_pred HHHHhcCCceEehHHHHHHHH
Confidence 345455566667774443333
No 29
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=31.72 E-value=21 Score=26.63 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=13.1
Q ss_pred hHHHHHHHHHhheeEEecCC
Q 027729 51 TIAISLILLAALLYVFWPSE 70 (219)
Q Consensus 51 ~v~i~i~~~~l~~~vl~P~~ 70 (219)
+++++.+++++++|+|||+.
T Consensus 57 ~~~~~w~~~A~~ly~~RP~s 76 (103)
T PF11027_consen 57 MMMMLWMVLAMALYLLRPSS 76 (103)
T ss_pred HHHHHHHHHHHHHHHcCchh
Confidence 44445555666678899983
No 30
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=31.71 E-value=1.3e+02 Score=24.00 Aligned_cols=32 Identities=13% Similarity=0.187 Sum_probs=18.7
Q ss_pred EEEECCC-ceEEEEcCeEEEEEECCE-EEeeeee
Q 027729 101 LKVHNRD-VYSVNYKSLDVSVGYRGR-KLGHVKS 132 (219)
Q Consensus 101 l~v~NPN-~~~i~y~~~~~~v~Y~g~-~vG~~~v 132 (219)
+.+.--| .+.+.|.++-=+++=.|+ .+.++..
T Consensus 76 F~vtD~~~~v~V~Y~GiLPDLFREGQgVVa~G~~ 109 (153)
T COG2332 76 FVVTDGNKSVTVSYEGILPDLFREGQGVVAEGQL 109 (153)
T ss_pred EEEecCCceEEEEEeccCchhhhcCCeEEEEEEe
Confidence 3344555 477777776666666665 4455554
No 31
>PF11739 DctA-YdbH: Dicarboxylate transport; InterPro: IPR021730 In certain bacterial families this protein is expressed from the ydbH gene, and there is a suggestion that this is a form of DctA or dicarboxylate transport protein. Dicarboxylate transport proteins are found in aerobic bacteria which grow on succinate or other C4-dicarboxylates [].
Probab=31.39 E-value=2.9e+02 Score=22.61 Aligned_cols=76 Identities=20% Similarity=0.233 Sum_probs=43.5
Q ss_pred EEEEEECCCceEEEEcCeEEEEEECCEEEeeeeeCCeeecCcceEEEEeeeEEeeeeeccchHHHHHhhcCCeeeEEEEE
Q 027729 99 VTLKVHNRDVYSVNYKSLDVSVGYRGRKLGHVKSNHGRVKALASSFIDAELQLKCVKVLSDVVYLLEDLARGTVPFDTIT 178 (219)
Q Consensus 99 ~~l~v~NPN~~~i~y~~~~~~v~Y~g~~vG~~~v~~~~~~a~~~~~v~~~v~~~~~~v~~~~~~L~~D~~~G~v~l~~~~ 178 (219)
+.+...+++.-.+..++.++.++ + |+..++++..+.++.. .+++.+++..+ .++.+.. +.-.++...
T Consensus 19 ~~~~~~~~~~~~l~l~~~s~~l~-g----G~v~~~~~~~~~~~~~--~~~l~l~~idL----~ell~~~--~~~~~~~tG 85 (207)
T PF11739_consen 19 FQLEAPNSEAGPLRLSNASAELL-G----GRVSLEPLRLPLADKS--SATLKLENIDL----AELLALQ--GQKGISATG 85 (207)
T ss_pred EEEecCCccCCcEEEEEeEEEcc-C----CEEEccceecCcccCe--EEEEEEcCCCH----HHHHhhc--CccceEEEE
Confidence 33333333345666667766664 3 4456788888884433 67788887776 3333332 222255556
Q ss_pred EEEEEEEEE
Q 027729 179 KVTGHLGLF 187 (219)
Q Consensus 179 ~v~g~v~~~ 187 (219)
++.|++=+.
T Consensus 86 ~lsG~lPl~ 94 (207)
T PF11739_consen 86 RLSGRLPLR 94 (207)
T ss_pred EEEEEEeEE
Confidence 677766654
No 32
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=30.72 E-value=1.5e+02 Score=22.69 Aligned_cols=8 Identities=25% Similarity=0.289 Sum_probs=3.4
Q ss_pred eEEEEcCe
Q 027729 109 YSVNYKSL 116 (219)
Q Consensus 109 ~~i~y~~~ 116 (219)
+.+.|.+.
T Consensus 84 i~V~Y~G~ 91 (131)
T PF03100_consen 84 IPVVYTGP 91 (131)
T ss_dssp EEEEEES-
T ss_pred EEEEECCC
Confidence 55554443
No 33
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=28.89 E-value=61 Score=27.36 Aligned_cols=7 Identities=29% Similarity=0.240 Sum_probs=3.0
Q ss_pred CccccCC
Q 027729 19 HYYTVLP 25 (219)
Q Consensus 19 ~~~~~~~ 25 (219)
..|+|..
T Consensus 89 ~l~tp~~ 95 (227)
T PF05399_consen 89 ELYTPSV 95 (227)
T ss_pred CcCCCCC
Confidence 3444443
No 34
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=28.11 E-value=1.2e+02 Score=25.80 Aligned_cols=45 Identities=33% Similarity=0.448 Sum_probs=33.2
Q ss_pred EEEEEECCCceEEEEcCeEEEEEECCEEEeeeeeCCeeecCcceEEEEee
Q 027729 99 VTLKVHNRDVYSVNYKSLDVSVGYRGRKLGHVKSNHGRVKALASSFIDAE 148 (219)
Q Consensus 99 ~~l~v~NPN~~~i~y~~~~~~v~Y~g~~vG~~~v~~~~~~a~~~~~v~~~ 148 (219)
..|+++||=-+-+.+.++++.. +|..++ ....++.++++..+...
T Consensus 165 ~~l~v~Nptpy~vtl~~~~l~~--~~~~~~---~~~~mv~P~s~~~~~l~ 209 (235)
T COG3121 165 NLLTVKNPTPYYVTLANLTLNV--GGRKLG---LNSGMVAPFSTRQFPLP 209 (235)
T ss_pred CEEEEECCCCcEEEEEEEEEee--CceecC---CCcceECCCccceeecC
Confidence 3789999998888888777776 777766 55667777777766543
No 35
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=25.96 E-value=4e+02 Score=22.35 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=31.0
Q ss_pred eEEEEEEEEEEEECCCceEEEE--cCeEEEEEECCEEEee
Q 027729 92 CIDISLNVTLKVHNRDVYSVNY--KSLDVSVGYRGRKLGH 129 (219)
Q Consensus 92 ~l~~~~~~~l~v~NPN~~~i~y--~~~~~~v~Y~g~~vG~ 129 (219)
.+...-+.+|.++=||++.+.+ +..+..++|+|..+--
T Consensus 36 klq~~~~~~v~v~RPdklr~~~~gd~~~~~~~yDGkt~Tl 75 (214)
T PF09865_consen 36 KLQFSSSGTVTVQRPDKLRIDRRGDGADREFYYDGKTFTL 75 (214)
T ss_pred eEEEEEEEEEEEeCCCeEEEEEEcCCcceEEEECCCEEEE
Confidence 4677778899999999988887 4577889999987653
No 36
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=25.92 E-value=1.6e+02 Score=23.34 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=10.8
Q ss_pred eEEEEcCeEEEEEECCE-EEeeeee
Q 027729 109 YSVNYKSLDVSVGYRGR-KLGHVKS 132 (219)
Q Consensus 109 ~~i~y~~~~~~v~Y~g~-~vG~~~v 132 (219)
+.+.|++.-=+.+=.|+ .+.+|..
T Consensus 84 i~V~Y~G~lPd~F~eg~~VVv~G~~ 108 (148)
T PRK13254 84 VPVVYTGILPDLFREGQGVVAEGRL 108 (148)
T ss_pred EEEEECCCCCccccCCCEEEEEEEE
Confidence 55555554444433332 3444444
No 37
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=25.77 E-value=57 Score=22.84 Aligned_cols=18 Identities=11% Similarity=0.385 Sum_probs=13.1
Q ss_pred hHHHHHHHHHhheeEEec
Q 027729 51 TIAISLILLAALLYVFWP 68 (219)
Q Consensus 51 ~v~i~i~~~~l~~~vl~P 68 (219)
++++||+.++.+++.|+=
T Consensus 39 ~L~LCiLvl~yai~~fkr 56 (74)
T PF11857_consen 39 VLLLCILVLIYAIFQFKR 56 (74)
T ss_pred HHHHHHHHHHHHhheeee
Confidence 666777777777777753
No 38
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=24.18 E-value=3.3e+02 Score=20.87 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=28.2
Q ss_pred EEEEEEEEECCCceEEEEcCeEEEEEECCEEEeee
Q 027729 96 SLNVTLKVHNRDVYSVNYKSLDVSVGYRGRKLGHV 130 (219)
Q Consensus 96 ~~~~~l~v~NPN~~~i~y~~~~~~v~Y~g~~vG~~ 130 (219)
.+.+..+|+|-.+..+..=.+++++..++...+..
T Consensus 63 ~~~v~g~V~N~g~~~i~~c~i~~~l~~~~~~~~n~ 97 (149)
T PF09624_consen 63 SFYVDGTVTNTGKFTIKKCKITVKLYNDKQVSGNK 97 (149)
T ss_pred EEEEEEEEEECCCCEeeEEEEEEEEEeCCCccCch
Confidence 46677899999999999999999998876655543
No 39
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=23.95 E-value=4.8e+02 Score=23.18 Aligned_cols=36 Identities=11% Similarity=0.179 Sum_probs=15.0
Q ss_pred chhhhHHHHHHH-HHhheeEE-ecCCCeEEEEeEEEeeE
Q 027729 47 NWYATIAISLIL-LAALLYVF-WPSEPELKIERLHLAHF 83 (219)
Q Consensus 47 ~~~~~v~i~i~~-~~l~~~vl-~P~~P~~~v~~~~l~~~ 83 (219)
+|+.+.+++++. ++++|.++ .|. |.+.+..+....+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~v~~~~~ 46 (370)
T PRK11578 9 KRYLIALVIVLAGGITLWRILNAPV-PTYQTLIVRPGDL 46 (370)
T ss_pred hhHHHHHHHHHHHHhhheeecCCCC-CceEEEEEEeeee
Confidence 366633333333 33333333 343 3455544444443
No 40
>PF10814 DUF2562: Protein of unknown function (DUF2562); InterPro: IPR024245 This protein of unknown function appears to be found predominantly in Mycobacterium spp.
Probab=22.75 E-value=62 Score=25.01 Aligned_cols=21 Identities=14% Similarity=-0.017 Sum_probs=9.1
Q ss_pred cchhh--hHHHHHHHHHhheeEE
Q 027729 46 RNWYA--TIAISLILLAALLYVF 66 (219)
Q Consensus 46 ~~~~~--~v~i~i~~~~l~~~vl 66 (219)
|.|+. +...++..-+.+|.++
T Consensus 90 Rplliagv~~~vLagGavAfsiv 112 (133)
T PF10814_consen 90 RPLLIAGVAVAVLAGGAVAFSIV 112 (133)
T ss_pred cchHHHHHHHHHHhccceEEEEe
Confidence 33655 2233333334445555
No 41
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=21.99 E-value=3.7e+02 Score=20.64 Aligned_cols=41 Identities=15% Similarity=0.145 Sum_probs=23.7
Q ss_pred HHHhheeEEecCCCeEEEEeEEEeeEEeCCCCCceEEEEEEEEEEEECCC
Q 027729 58 LLAALLYVFWPSEPELKIERLHLAHFHVRMKPAICIDISLNVTLKVHNRD 107 (219)
Q Consensus 58 ~~~l~~~vl~P~~P~~~v~~~~l~~~~~~~~~~~~l~~~~~~~l~v~NPN 107 (219)
+++.-|+.=+.+.|.+.+......+- ....+-+-++|+|--
T Consensus 21 lv~y~~l~~~~~pp~l~v~~~~~~r~---------~~gqyyVpF~V~N~g 61 (122)
T TIGR02588 21 LVAYDWLRYSNKAAVLEVAPAEVERM---------QTGQYYVPFAIHNLG 61 (122)
T ss_pred HHHHHhhccCCCCCeEEEeehheeEE---------eCCEEEEEEEEEeCC
Confidence 33343445578899987766555432 222345566777754
No 42
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=21.83 E-value=36 Score=21.65 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=8.9
Q ss_pred hHHHHHHHHHhheeEEecCCCe
Q 027729 51 TIAISLILLAALLYVFWPSEPE 72 (219)
Q Consensus 51 ~v~i~i~~~~l~~~vl~P~~P~ 72 (219)
+++++++++++..=++.|.+|+
T Consensus 23 ~il~~~vl~ai~~p~~~p~~~~ 44 (56)
T PF12911_consen 23 IILLILVLLAIFAPFISPYDPN 44 (56)
T ss_pred HHHHHHHHHHHHHHHcCCCCcc
Confidence 3333333333333344555443
No 43
>PF11623 DUF3252: Protein of unknown function (DUF3252); InterPro: IPR021659 This family of proteins has no known function. Some members are annotated as Ssl0352 however this cannot be confirmed. Currently there is no known function. ; PDB: 3C4S_B 2JZ2_A.
Probab=21.62 E-value=63 Score=21.02 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=12.8
Q ss_pred EEEEEECCCc--eEE-----EEcCeEEEEEECC
Q 027729 99 VTLKVHNRDV--YSV-----NYKSLDVSVGYRG 124 (219)
Q Consensus 99 ~~l~v~NPN~--~~i-----~y~~~~~~v~Y~g 124 (219)
.+++|.|||- +.+ +..+..+.|.|.|
T Consensus 6 ~~V~V~n~~~~Y~~y~G~VQRvsdgkaaVLFEG 38 (53)
T PF11623_consen 6 STVRVKNPNDIYYGYEGFVQRVSDGKAAVLFEG 38 (53)
T ss_dssp -EEEE--TTSTTTT-EEEEEEEETTEEEEEEEE
T ss_pred CEEEEeCCCCccchheEEEEEeeCCeEEEEecC
Confidence 4688999993 332 2445555555544
No 44
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=20.45 E-value=44 Score=21.02 Aligned_cols=20 Identities=10% Similarity=0.509 Sum_probs=12.0
Q ss_pred hHHHHHHHHHhheeEEecCC
Q 027729 51 TIAISLILLAALLYVFWPSE 70 (219)
Q Consensus 51 ~v~i~i~~~~l~~~vl~P~~ 70 (219)
+++++++.+++.+++++|+.
T Consensus 15 ~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 15 TVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHcccc
Confidence 44444555555667778873
No 45
>PF01611 Filo_glycop: Filovirus glycoprotein; InterPro: IPR002561 This entry represents an extracellular domain from the envelope glycoprotein of Ebola virus sp. and Lake Victoria marburgvirus. The extracellular domain is also produced as a separate transcript that gives rise to a non-structural, secreted glycoprotein, which is produced in large amounts and has an unknown function []. Processing of the protein may be involved in viral pathogenicity [].; PDB: 3VE0_I 3CSY_O 3S88_I.
Probab=20.26 E-value=81 Score=28.28 Aligned_cols=34 Identities=18% Similarity=0.160 Sum_probs=21.0
Q ss_pred EEEEEECCCc--eEE-------EEcCeEEEEEECCEEEeeeee
Q 027729 99 VTLKVHNRDV--YSV-------NYKSLDVSVGYRGRKLGHVKS 132 (219)
Q Consensus 99 ~~l~v~NPN~--~~i-------~y~~~~~~v~Y~g~~vG~~~v 132 (219)
=.++=.||=- ++| -||.+...+.|||..+++|.+
T Consensus 125 HkvqGtgPcpgg~AfHk~GAFFLYDRlASTviYRG~tFaEGvI 167 (364)
T PF01611_consen 125 HKVQGTGPCPGGIAFHKWGAFFLYDRLASTVIYRGTTFAEGVI 167 (364)
T ss_dssp EEEEEE----SSEEEETTS-EEEESSEEESS--TT-EBEEEEE
T ss_pred eeeccCCCCCCcceeecccceeeecccceeeEecceeeecceE
Confidence 3556667752 444 499999999999999999876
Done!