Query 027729
Match_columns 219
No_of_seqs 158 out of 710
Neff 7.3
Searched_HMMs 29240
Date Tue Mar 26 00:32:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027729.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027729hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.9 4.8E-09 1.6E-13 84.4 8.9 100 69-179 43-144 (174)
2 1xo8_A AT1G01470; structural g 98.7 6.7E-09 2.3E-13 81.7 4.7 103 69-186 20-124 (151)
3 3but_A Uncharacterized protein 98.5 1.4E-06 5E-11 67.2 11.1 73 95-170 18-91 (136)
4 2l0d_A Cell surface protein; s 50.0 69 0.0024 23.1 8.9 68 70-149 2-69 (114)
5 3hd7_B Syntaxin-1A; membrane p 42.1 4.1 0.00014 29.4 -0.6 7 44-50 83-89 (109)
6 2kj1_A BM2 protein; cytoplasmi 28.5 13 0.00046 24.9 0.2 13 96-108 9-21 (89)
7 2bf9_A Pancreatic hormone; tur 25.9 28 0.00096 20.0 1.2 14 2-15 1-14 (36)
8 1bba_A Bovine pancreatic polyp 25.8 39 0.0013 19.4 1.8 14 2-15 1-14 (36)
9 2jz2_A SSL0352 protein; SH3-li 23.2 35 0.0012 22.2 1.5 26 99-124 6-38 (66)
10 3idu_A Uncharacterized protein 14.9 3.4E+02 0.012 19.5 7.8 48 97-149 35-82 (127)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=98.90 E-value=4.8e-09 Score=84.36 Aligned_cols=100 Identities=11% Similarity=0.192 Sum_probs=80.6
Q ss_pred CCCeEEEEeEEEeeEEeCCCCCceEEEEEEEEEEEECCCceEEEEcCeEEEEEECCEEEeeeeeCC-eeecCcceEEEEe
Q 027729 69 SEPELKIERLHLAHFHVRMKPAICIDISLNVTLKVHNRDVYSVNYKSLDVSVGYRGRKLGHVKSNH-GRVKALASSFIDA 147 (219)
Q Consensus 69 ~~P~~~v~~~~l~~~~~~~~~~~~l~~~~~~~l~v~NPN~~~i~y~~~~~~v~Y~g~~vG~~~v~~-~~~~a~~~~~v~~ 147 (219)
+.|++++.++++.+++.. .++|.+.++|+|||.+++.+.+++.++.-+|..++++.++. +.+++++++.+.+
T Consensus 43 ~~PeV~v~~v~~~~~~l~-------~~~~~l~LrV~NPN~~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v~V 115 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTRD-------GVDYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVLDV 115 (174)
T ss_dssp CCCEEEEEEEEEEEECSS-------SEEEEEEEEEEECSSSCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEEEEE
T ss_pred CCCEEEEEEeEEeccccc-------eEEEEEEEEEECCCCCCccccceEEEEEECCEEEEEEecCCCceECCCCcEEEEE
Confidence 799999999999988753 25688999999999999999999999999999999999865 6999999999999
Q ss_pred eeEEeeeeeccchHHHHHhhcC-CeeeEEEEEE
Q 027729 148 ELQLKCVKVLSDVVYLLEDLAR-GTVPFDTITK 179 (219)
Q Consensus 148 ~v~~~~~~v~~~~~~L~~D~~~-G~v~l~~~~~ 179 (219)
++++....+ ..+.+|+.+ +.++++++++
T Consensus 116 pv~v~~~~l----~~~~~~l~~~~~i~Y~L~g~ 144 (174)
T 1yyc_A 116 PVKVAYSIA----VSLMKDMCTDWDIDYQLDIG 144 (174)
T ss_dssp EEEESHHHH----HHTCCCCCSSEEECEEEEEE
T ss_pred EEEEEHHHH----HHHHHhcCCCCccceEEEEE
Confidence 988775433 334455543 4566654433
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=98.75 E-value=6.7e-09 Score=81.73 Aligned_cols=103 Identities=17% Similarity=0.222 Sum_probs=81.4
Q ss_pred CCCeEEEEeEEEeeEEeCCCCCceEEEEEEEEEEEECCCceEEEEcCeEEEEEECCEEEeeeeeC-CeeecCcceEEEEe
Q 027729 69 SEPELKIERLHLAHFHVRMKPAICIDISLNVTLKVHNRDVYSVNYKSLDVSVGYRGRKLGHVKSN-HGRVKALASSFIDA 147 (219)
Q Consensus 69 ~~P~~~v~~~~l~~~~~~~~~~~~l~~~~~~~l~v~NPN~~~i~y~~~~~~v~Y~g~~vG~~~v~-~~~~~a~~~~~v~~ 147 (219)
+.|++++.++++.+++. ..++|.+.++|+|||-+++.+.+++.++.-+|..++++..+ .+.+++++++.+.+
T Consensus 20 ~~P~v~v~~v~~~~~~~-------~~~~~~~~l~V~NPN~~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~g~~~v~v 92 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNR-------DSVEYLAKVSVTNPYSHSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTALDI 92 (151)
T ss_dssp CSCCCBCSEEEECCCTT-------TEECEEEEEEEECSSSSCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEEEEE
T ss_pred CCCEEEEEEeEEeccCc-------ceeEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEecCCCcEECCCCcEEEEE
Confidence 68999999999887754 34568899999999999999999999999999999999874 47999999999999
Q ss_pred eeEEeeeeeccchHHHHHhhc-CCeeeEEEEEEEEEEEEE
Q 027729 148 ELQLKCVKVLSDVVYLLEDLA-RGTVPFDTITKVTGHLGL 186 (219)
Q Consensus 148 ~v~~~~~~v~~~~~~L~~D~~-~G~v~l~~~~~v~g~v~~ 186 (219)
++++....+ ..+.+|+. ++.++++ ++|++.+
T Consensus 93 pv~v~~~~l----~~~~~~l~~~~~i~Y~----l~g~l~i 124 (151)
T 1xo8_A 93 PVVVPYSIL----FNLARDVGVDWDIDYE----LQIGLTI 124 (151)
T ss_dssp CCCEEHHHH----HHHHHHHHHHSEEEEE----EEEEEEE
T ss_pred EEEEEHHHH----HHHHHhcccCCcccEE----EEEEEEE
Confidence 988875433 44455553 4556664 5555554
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=98.48 E-value=1.4e-06 Score=67.16 Aligned_cols=73 Identities=18% Similarity=0.241 Sum_probs=61.3
Q ss_pred EEEEEEEEEECCCceEEEEcCeEEEEEECCEEEeeee-eCCeeecCcceEEEEeeeEEeeeeeccchHHHHHhhcCC
Q 027729 95 ISLNVTLKVHNRDVYSVNYKSLDVSVGYRGRKLGHVK-SNHGRVKALASSFIDAELQLKCVKVLSDVVYLLEDLARG 170 (219)
Q Consensus 95 ~~~~~~l~v~NPN~~~i~y~~~~~~v~Y~g~~vG~~~-v~~~~~~a~~~~~v~~~v~~~~~~v~~~~~~L~~D~~~G 170 (219)
..|.+.+++.|||.+++.+++++..+..+|..+|+|. ...+.+++++++.+.+++.++-.++.. .+.+.+.+|
T Consensus 18 t~~~~~l~V~NPN~~~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~~---~~~~hi~ng 91 (136)
T 3but_A 18 TEIVALAKVRNEDVVPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLRE---WWVTHIANG 91 (136)
T ss_dssp EEEEEEEEEECCSSSCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHTT---HHHHHHHTT
T ss_pred EEEEEEEEEeCCCCcceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHhHH---HHHHHhhcC
Confidence 4588899999999999999999999999999999997 578899999999999999888766643 344444455
No 4
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=50.03 E-value=69 Score=23.05 Aligned_cols=68 Identities=16% Similarity=0.125 Sum_probs=41.8
Q ss_pred CCeEEEEeEEEeeEEeCCCCCceEEEEEEEEEEEECCCceEEEEcCeEEEEEECCEEEeeeeeCCeeecCcceEEEEeee
Q 027729 70 EPELKIERLHLAHFHVRMKPAICIDISLNVTLKVHNRDVYSVNYKSLDVSVGYRGRKLGHVKSNHGRVKALASSFIDAEL 149 (219)
Q Consensus 70 ~P~~~v~~~~l~~~~~~~~~~~~l~~~~~~~l~v~NPN~~~i~y~~~~~~v~Y~g~~vG~~~v~~~~~~a~~~~~v~~~v 149 (219)
.|+..+.++.-... .-+-..+++++|+|.--.. =.+..+.++.+|..+|...+++ +.++.++.+.++.
T Consensus 2 ~PDL~vt~itP~~~--------~~~~~~ti~atVkN~G~~~--a~~~~V~ly~~g~~v~t~~v~~--LaaG~s~tv~~~w 69 (114)
T 2l0d_A 2 IPDLVPVSLTPVTV--------VPNTVNTMTATIENQGNKD--STSFNVSLLVDGIVVDTQTVTS--LESENSTNVDFHW 69 (114)
T ss_dssp CCCEEEEEEECSEE--------CTTSEEEEEEEEEECSSSC--BCCEEEEEEETTEEEEEEEESC--BCBTCEEEEEEEE
T ss_pred CCCcEEEeccCCCc--------CCCCeEEEEEEEEECCCCC--CCCEEEEEEECCEEEcceeccc--ccCCCEEEEEEEE
Confidence 46777777632221 1122346677899986422 1456777878999999887765 4555566665543
No 5
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=42.14 E-value=4.1 Score=29.42 Aligned_cols=7 Identities=14% Similarity=0.216 Sum_probs=3.4
Q ss_pred Cccchhh
Q 027729 44 PRRNWYA 50 (219)
Q Consensus 44 ~~~~~~~ 50 (219)
|++.|+|
T Consensus 83 rkk~~i~ 89 (109)
T 3hd7_B 83 RRKKIMI 89 (109)
T ss_dssp HHHHHHH
T ss_pred cCcceeh
Confidence 3333666
No 6
>2kj1_A BM2 protein; cytoplasmic domain, coiled coil, transport protein; NMR {Influenza b virus}
Probab=28.49 E-value=13 Score=24.85 Aligned_cols=13 Identities=8% Similarity=0.434 Sum_probs=3.6
Q ss_pred EEEEEEEEECCCc
Q 027729 96 SLNVTLKVHNRDV 108 (219)
Q Consensus 96 ~~~~~l~v~NPN~ 108 (219)
.+++.++++|||+
T Consensus 9 gv~lki~ir~pnk 21 (89)
T 2kj1_A 9 GVNMKIRIKGPNK 21 (89)
T ss_dssp ---------CCCH
T ss_pred cCceEEEecCCCH
Confidence 4678899999996
No 7
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=25.91 E-value=28 Score=20.03 Aligned_cols=14 Identities=36% Similarity=0.358 Sum_probs=11.1
Q ss_pred CCCCCCCCCCCCCC
Q 027729 2 APSKTTSPLPPATP 15 (219)
Q Consensus 2 ~~~~~~~~~~~~~~ 15 (219)
||+|...|+..|++
T Consensus 1 ~P~kP~~PG~dA~~ 14 (36)
T 2bf9_A 1 GPSQPTYPGDDAPV 14 (36)
T ss_dssp CCCCCCCCCTTSCH
T ss_pred CCCCCCCCCCCCCH
Confidence 68888888887765
No 8
>1bba_A Bovine pancreatic polypeptide; pancreatic hormone; NMR {Bos taurus} SCOP: j.6.1.1 PDB: 1ljv_A 1tz5_A 1v1d_A
Probab=25.81 E-value=39 Score=19.42 Aligned_cols=14 Identities=43% Similarity=0.508 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCCCC
Q 027729 2 APSKTTSPLPPATP 15 (219)
Q Consensus 2 ~~~~~~~~~~~~~~ 15 (219)
+|+|...|+..|+|
T Consensus 1 ~P~kP~~PG~dA~p 14 (36)
T 1bba_A 1 APLEPEYPGDNATP 14 (36)
T ss_dssp CCCCCCCCSSCSST
T ss_pred CCCCCCCCCCCCCH
Confidence 58888888887776
No 9
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=23.16 E-value=35 Score=22.20 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=16.1
Q ss_pred EEEEEECCC--ceEE-----EEcCeEEEEEECC
Q 027729 99 VTLKVHNRD--VYSV-----NYKSLDVSVGYRG 124 (219)
Q Consensus 99 ~~l~v~NPN--~~~i-----~y~~~~~~v~Y~g 124 (219)
+++.|.||| ++++ +..+..+.|.|.|
T Consensus 6 ~~V~V~np~~~Yy~y~G~VQRvsdgkaaVLFEG 38 (66)
T 2jz2_A 6 ATVRVTNVDDTYYRFEGLVQRVSDGKAAVLFEN 38 (66)
T ss_dssp CEEEECCTTSTTBTCEEEEEEEETTEEEEEEES
T ss_pred CEEEEeCCCCcccceeEEEEEecCCcEEEEecC
Confidence 368899999 3332 3455556666654
No 10
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=14.95 E-value=3.4e+02 Score=19.53 Aligned_cols=48 Identities=15% Similarity=0.072 Sum_probs=34.8
Q ss_pred EEEEEEEECCCceEEEEcCeEEEEEECCEEEeeeeeCCeeecCcceEEEEeee
Q 027729 97 LNVTLKVHNRDVYSVNYKSLDVSVGYRGRKLGHVKSNHGRVKALASSFIDAEL 149 (219)
Q Consensus 97 ~~~~l~v~NPN~~~i~y~~~~~~v~Y~g~~vG~~~v~~~~~~a~~~~~v~~~v 149 (219)
.+++++|+|--.... ++..+.++-+|..++...+ .+.+.+++.+.++.
T Consensus 35 ~ti~vtV~N~G~~~a--~~~~V~lyvng~~v~t~~v---~La~G~s~tv~f~~ 82 (127)
T 3idu_A 35 AEYEVHVKNLGGIGV--PSTKVRVYINGTLYKNWTV---SLGPKEEKVLTFNW 82 (127)
T ss_dssp EEEEEEEEECSSSCE--EEEEEEEEETTEEEEEEEE---EECTTCEEEEEEEE
T ss_pred EEEEEEEEECCCCcc--CCcEEEEEECCEEEeeEEe---ccCCCCeEEEEEEE
Confidence 456778888764332 4577888889999988766 37888888876665
Done!