BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027730
         (219 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P0CB19|Y3081_ARATH Uncharacterized protein At3g50808 OS=Arabidopsis thaliana
           GN=At3g50808 PE=4 SV=1
          Length = 110

 Score = 42.7 bits (99), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 35/138 (25%)

Query: 79  IQKVLDISGVQTYVINSARVVFLNER---PQPRPGKGVTNTCEVCDRSL--LDSFRFCSL 133
           + + +DISG+  Y IN   +V++N+R      R    V + C++C+  +    S  FCS+
Sbjct: 1   MSQYMDISGIHLYSINGFPIVYINQRRGNNNHRSRSNVMHKCKICEWEIDAASSALFCSM 60

Query: 134 GCKIVGTSKNFQKRKNRLAMGSDSEDSYSSSIHGKLKNRDFSSNNNNKMQSFSPSTPPPT 193
            CK             R  +GS  ++                  N++++   S     P 
Sbjct: 61  ECKF------------RSVLGSQLDELME---------------NSSEVTEISEEIDEPV 93

Query: 194 AVSHRISKRRKGIPHRAP 211
               +   RRKG PHRAP
Sbjct: 94  M---KKRHRRKGSPHRAP 108


>sp|Q6CVA2|STE20_KLULA Serine/threonine-protein kinase STE20 OS=Kluyveromyces lactis
           (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
           NRRL Y-1140 / WM37) GN=STE20 PE=3 SV=1
          Length = 989

 Score = 33.5 bits (75), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 156 DSEDSYSSSIHGKLKNRDFSSNNNNKMQSFSPSTPPPTAVSHRISKRRKGIPHRAPMGGL 215
           +++  YSS++ G L   DFS   NN  + F P+ P P         RR  IP  +P+  L
Sbjct: 518 NNDTPYSSNLQGPLLTNDFSETVNN--EKFIPTRPAPKPQGSSTVSRRVEIP--SPINSL 573


>sp|P78364|PHC1_HUMAN Polyhomeotic-like protein 1 OS=Homo sapiens GN=PHC1 PE=1 SV=3
          Length = 1004

 Score = 33.1 bits (74), Expect = 1.5,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 26/121 (21%)

Query: 117 CEVCDR-----SLLDSFRFCSLGC-KIVGTSKNFQKRKNRLAMGSDSEDSYS-------- 162
           CE C +         S RFCS+ C K    S + Q R  R  M    E +Y+        
Sbjct: 800 CEYCGKYAPAEQFRGSKRFCSMTCAKRYNVSCSHQFRLKRKKMKEFQEANYARVRRRGPR 859

Query: 163 --------SSIHGKL----KNRDFSSNNNNKMQSFSPSTPPPTAVSHRISKRRKGIPHRA 210
                   + I GK     ++    S+N++  ++ SP++P P +V     +R  G P+ A
Sbjct: 860 RSSSDIARAKIQGKCHRGQEDSSRGSDNSSYDEALSPTSPGPLSVRAGHGERDLGNPNTA 919

Query: 211 P 211
           P
Sbjct: 920 P 920


>sp|Q38V07|ADEC2_LACSS Adenine deaminase 2 OS=Lactobacillus sakei subsp. sakei (strain
           23K) GN=ade2 PE=3 SV=1
          Length = 580

 Score = 32.3 bits (72), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 6/67 (8%)

Query: 46  NGAFCSLCLDYHKDHRAIQIRRSSYHD-VIRVSEIQKVLD-ISGVQTYVINSARVVFLNE 103
           N  FC LC D   D +++ +R + + D  IRV+ IQ  +D ++ +Q   IN+A+   L++
Sbjct: 264 NARFCCLCGD---DLQSVTLRETGHLDESIRVA-IQNGIDPLTAIQMATINTAQCTGLSD 319

Query: 104 RPQPRPG 110
           R    PG
Sbjct: 320 RGGIAPG 326


>sp|Q1E7Y4|MAK5_COCIM ATP-dependent RNA helicase MAK5 OS=Coccidioides immitis (strain RS)
           GN=MAK5 PE=3 SV=1
          Length = 783

 Score = 30.4 bits (67), Expect = 9.3,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 54/144 (37%), Gaps = 22/144 (15%)

Query: 57  HKDHRAIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNT 116
           HKDH A  I+R  ++     S      DI  V        + V L +R     G      
Sbjct: 9   HKDHTAKAIKRRKFNAATAKSSDDAAHDIVSVDQL---DWKTVTLPDRLDDAEGFYGLEE 65

Query: 117 CEVCD---RSLLDSFRFCSLGCKIVGTSKNFQKRKNRLA--------MGSDSEDSYSSSI 165
            E  D    S     +F +   KI G  KN   +  + A         G DSED   +++
Sbjct: 66  IEGVDILRPSGGGEIKFKASKSKIKGILKNSTDKSGQPAEDWEEWSGFGDDSEDGDGTTL 125

Query: 166 --------HGKLKNRDFSSNNNNK 181
                   HGK+ +R   +NN+NK
Sbjct: 126 EAEKKAENHGKVNDRRTKTNNSNK 149


>sp|Q03525|TMA23_YEAST Protein TMA23 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
           S288c) GN=TMA23 PE=1 SV=2
          Length = 211

 Score = 30.4 bits (67), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 33/71 (46%)

Query: 126 DSFRFCSLGCKIVGTSKNFQKRKNRLAMGSDSEDSYSSSIHGKLKNRDFSSNNNNKMQSF 185
           ++FR   L   I+   K  +K       G+D E  +     G LKN D S+++NN    F
Sbjct: 16  EAFREGGLKRPILVKHKRDKKGLGNAPGGNDGEAWWERLFDGHLKNLDVSTDSNNGSIKF 75

Query: 186 SPSTPPPTAVS 196
           + +    TAVS
Sbjct: 76  TQNEAVATAVS 86


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.135    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,807,817
Number of Sequences: 539616
Number of extensions: 3523867
Number of successful extensions: 11587
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 11528
Number of HSP's gapped (non-prelim): 67
length of query: 219
length of database: 191,569,459
effective HSP length: 113
effective length of query: 106
effective length of database: 130,592,851
effective search space: 13842842206
effective search space used: 13842842206
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)