Query 027730
Match_columns 219
No_of_seqs 140 out of 190
Neff 4.2
Searched_HMMs 29240
Date Tue Mar 26 00:33:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027730.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027730hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ddt_A E3 ubiquitin-protein li 95.0 0.0092 3.2E-07 38.8 1.7 39 23-65 6-46 (48)
2 2d8u_A Ubiquitin ligase TRIM63 94.9 0.011 3.6E-07 40.3 1.9 36 25-64 10-47 (64)
3 2yvr_A Transcription intermedi 94.7 0.01 3.5E-07 38.7 1.3 36 25-64 8-44 (50)
4 1fre_A Nuclear factor XNF7; zi 94.3 0.026 8.8E-07 35.5 2.5 35 25-64 5-41 (42)
5 2did_A Tripartite motif protei 93.8 0.03 1E-06 37.0 2.1 36 25-65 10-47 (53)
6 2yrg_A Tripartite motif-contai 92.1 0.071 2.4E-06 36.3 2.1 37 25-66 16-54 (59)
7 2csv_A Tripartite motif protei 91.9 0.055 1.9E-06 37.8 1.5 35 25-64 20-55 (72)
8 2dja_A Midline-2; tripartite m 90.9 0.067 2.3E-06 38.1 1.0 39 25-67 20-60 (84)
9 2egm_A Tripartite motif-contai 90.1 0.042 1.4E-06 37.3 -0.6 35 25-64 20-56 (57)
10 2w0t_A Lethal(3)malignant brai 88.6 0.084 2.9E-06 35.3 -0.0 25 112-136 4-34 (43)
11 2jun_A Midline-1; B-BOX, TRIM, 88.6 0.13 4.5E-06 37.4 1.1 37 24-64 60-98 (101)
12 2das_A Zinc finger MYM-type pr 84.4 0.64 2.2E-05 33.1 2.7 31 107-137 13-53 (62)
13 2l8e_A Polyhomeotic-like prote 69.2 0.62 2.1E-05 31.5 -1.0 24 114-137 18-46 (49)
14 1lv3_A Hypothetical protein YA 57.6 1.5 5E-05 31.7 -0.9 28 114-141 9-41 (68)
15 2jun_A Midline-1; B-BOX, TRIM, 40.3 10 0.00036 27.1 1.3 27 34-61 14-41 (101)
16 3nis_A E3 ubiquitin-protein li 40.0 17 0.0006 26.6 2.5 30 33-62 16-50 (82)
17 3ny3_A E3 ubiquitin-protein li 39.4 17 0.00057 26.2 2.3 30 33-62 12-46 (75)
18 2yqp_A Probable ATP-dependent 34.2 19 0.00063 25.4 1.7 29 114-142 19-52 (60)
19 2hiy_A Hypothetical protein; C 34.1 13 0.00045 30.5 1.2 32 71-103 19-53 (183)
20 1tot_A CREB-binding protein; z 32.9 16 0.00054 24.4 1.2 28 38-66 19-48 (52)
21 2yqq_A Zinc finger HIT domain- 31.2 17 0.00058 25.0 1.1 22 114-136 12-39 (56)
22 2nrr_A Uvrabc system protein C 26.3 11 0.00039 30.9 -0.5 27 81-107 21-47 (159)
23 2fc7_A ZZZ3 protein; structure 24.0 31 0.0011 25.0 1.5 30 39-68 37-76 (82)
24 2dip_A Zinc finger SWIM domain 23.1 14 0.00047 27.9 -0.6 29 39-67 47-77 (98)
25 2odd_A Protein CBFA2T1; MYND z 20.8 29 0.00098 23.3 0.7 29 114-142 17-51 (64)
No 1
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=94.99 E-value=0.0092 Score=38.84 Aligned_cols=39 Identities=36% Similarity=0.718 Sum_probs=30.6
Q ss_pred cccCCCCCCCCCCCcceecccCCCCcCCcccc-c-CCCCCceeEE
Q 027730 23 FVQCKLHPDSHKSECNMYCLDCMNGAFCSLCL-D-YHKDHRAIQI 65 (219)
Q Consensus 23 F~~C~~H~~~~knE~N~FCldC~~~~~C~~Cl-~-~H~~Hr~lQI 65 (219)
...|..|.. ...++||.+|. ..+|..|. . .|++|+++.|
T Consensus 6 ~~~C~~H~~---e~l~lfC~~d~-~~iC~~C~~~~~H~~H~~~~l 46 (48)
T 3ddt_A 6 HPMCKEHED---EKINIYCLTCE-VPTCSMCKVFGIHKACEVAPL 46 (48)
T ss_dssp SCBCSSSTT---SBCCEEETTTT-EEECHHHHHHSTTTTSCEEEC
T ss_pred CCcCCCCCC---ccccEEcCCCC-eeEcccccCCCcCCCCcEEeC
Confidence 356998873 13679999997 89999995 3 8999987654
No 2
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=94.92 E-value=0.011 Score=40.32 Aligned_cols=36 Identities=39% Similarity=0.784 Sum_probs=28.6
Q ss_pred cCCCCCCCCCCCcceecccCCCCcCCccccc--CCCCCceeE
Q 027730 25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCLD--YHKDHRAIQ 64 (219)
Q Consensus 25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~Hr~lQ 64 (219)
.|..|.. ...++||.+|. ..+|..|.. .|++|+++-
T Consensus 10 ~C~~H~~---e~l~lfC~~d~-~~iC~~C~~~~~H~~H~~~~ 47 (64)
T 2d8u_A 10 MCKEHED---EKINIYCLTCE-VPTCSMCKVFGIHKACEVAP 47 (64)
T ss_dssp CCSSCTT---CCCCSEESSSC-CCCCSHHHHSSSTTSSCEEC
T ss_pred cCcCcCC---CccceEcCcCC-ceeCccccCCCcCCCCCeeC
Confidence 5999954 24689999997 899999953 899987654
No 3
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=94.68 E-value=0.01 Score=38.74 Aligned_cols=36 Identities=28% Similarity=0.565 Sum_probs=28.2
Q ss_pred cCCCCCCCCCCCcceecccCCCCcCCccccc-CCCCCceeE
Q 027730 25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCLD-YHKDHRAIQ 64 (219)
Q Consensus 25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~Hr~lQ 64 (219)
.|..|.. ...++||.+|. ..+|..|.. .|++|+++-
T Consensus 8 ~C~~H~~---e~l~lfC~~~~-~~iC~~C~~~~H~~H~~~~ 44 (50)
T 2yvr_A 8 YCNVHKH---EPLVLFCESCD-TLTCRDCQLNAHKDHQYQF 44 (50)
T ss_dssp BCSSSTT---CBCCEEETTTT-EEECHHHHHTTTTTCCEEE
T ss_pred cCcCCCC---CCEEEEeCCCC-EEEecccCCCcCCCCceec
Confidence 4999954 24789999997 889999954 788887654
No 4
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=94.27 E-value=0.026 Score=35.50 Aligned_cols=35 Identities=29% Similarity=0.655 Sum_probs=28.4
Q ss_pred cCCCCCCCCCCCcceecccCCCCcCCccccc--CCCCCceeE
Q 027730 25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCLD--YHKDHRAIQ 64 (219)
Q Consensus 25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~Hr~lQ 64 (219)
.|..|.. ...+||.+|. ..+|..|.. .|++|+++.
T Consensus 5 ~C~~H~e----~l~lfC~~d~-~~iC~~C~~~~~H~~H~~~~ 41 (42)
T 1fre_A 5 KCSEHDE----RLKLYCKDDG-TLSCVICRDSLKHASHNFLP 41 (42)
T ss_dssp CCCSSCS----SCCCCCCSSS-SSSCCTTSSCSSCTTCCCCC
T ss_pred cchhhCC----eeeEEeCCCC-eEEeccCCCCCCCCCCcEec
Confidence 5888862 4689999997 889999964 799998753
No 5
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=93.75 E-value=0.03 Score=36.96 Aligned_cols=36 Identities=22% Similarity=0.659 Sum_probs=29.2
Q ss_pred cCCCCCCCCCCCcceecccCCCCcCCccccc--CCCCCceeEE
Q 027730 25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCLD--YHKDHRAIQI 65 (219)
Q Consensus 25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~Hr~lQI 65 (219)
.|..|.. ...+||.+|. ..+|..|.. .|++|+++-|
T Consensus 10 ~C~~H~e----~l~lfC~~d~-~~iC~~C~~~~~H~~H~~~~l 47 (53)
T 2did_A 10 LCPQHHE----ALSLFCYEDQ-EAVCLICAISHTHRAHTVVPL 47 (53)
T ss_dssp BCTTTCC----BCCEEESSSC-SEECHHHHTSSTTTTSCEEEC
T ss_pred cChhhCC----eeeEEeCCCC-eEEeccccCCCCCCCCcEeeH
Confidence 5999962 4689999997 899999964 8999987654
No 6
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.09 E-value=0.071 Score=36.33 Aligned_cols=37 Identities=22% Similarity=0.555 Sum_probs=30.0
Q ss_pred cCCCCCCCCCCCcceecccCCCCcCCccccc--CCCCCceeEEE
Q 027730 25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCLD--YHKDHRAIQIR 66 (219)
Q Consensus 25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~Hr~lQIR 66 (219)
.|..|.. ...+||.+|. ..+|..|.. .|++|+++.|-
T Consensus 16 ~C~~H~e----~L~lfC~~d~-~~iC~~C~~s~eH~~H~~~~l~ 54 (59)
T 2yrg_A 16 HCARHGE----KLLLFCQEDG-KVICWLCERSQEHRGHHTFPTS 54 (59)
T ss_dssp BCTTTCC----BCCEEETTTC-SEECHHHHTSTTTTTCCEEECC
T ss_pred cChhhCc----eeeeecCCCC-cEEecccCCCCcCCCCcEeeHH
Confidence 5999963 5689999997 889999964 89999877653
No 7
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=91.94 E-value=0.055 Score=37.83 Aligned_cols=35 Identities=26% Similarity=0.710 Sum_probs=27.8
Q ss_pred cCCCCCCCCCCCcceecccCCCCcCCccccc-CCCCCceeE
Q 027730 25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCLD-YHKDHRAIQ 64 (219)
Q Consensus 25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~Hr~lQ 64 (219)
.|..|.. ..++||.+|. ..+|..|.. .|++|+++-
T Consensus 20 ~C~~H~e----~l~lfC~~d~-~~iC~~C~~~~H~~H~~~~ 55 (72)
T 2csv_A 20 KCPVHGK----TMELFCQTDQ-TCICYLCMFQEHKNHSTVT 55 (72)
T ss_dssp BCTTTCC----BCCEEESSSC-CEECHHHHHTTTSSSCEEE
T ss_pred cCcccCC----ceEEEeCCCC-eEEccccCCCCCCCCCEec
Confidence 6999942 5689999997 889999965 788876554
No 8
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=90.86 E-value=0.067 Score=38.13 Aligned_cols=39 Identities=31% Similarity=0.686 Sum_probs=30.1
Q ss_pred cCCCCCCCCCCCcceecccCCCCcCCccccc--CCCCCceeEEEe
Q 027730 25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCLD--YHKDHRAIQIRR 67 (219)
Q Consensus 25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~Hr~lQIRR 67 (219)
.|..|.. ...++||.+|. ..+|..|.. .|++|+++-|--
T Consensus 20 ~C~~H~~---e~l~lfC~~d~-~~iC~~C~~~~~H~~H~~~~l~e 60 (84)
T 2dja_A 20 TCLDHEN---EKVNMYCVSDD-QLICALCKLVGRHRDHQVASLND 60 (84)
T ss_dssp CCSSCSS---SCCCEEETTTT-EEECHHHHHTSTTTTCCBCCCCS
T ss_pred cCcCcCC---ccccEEcCCCC-ceEcccCcCCCCCCCCCccCHHH
Confidence 5999953 13689999997 899999954 899998765443
No 9
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.05 E-value=0.042 Score=37.29 Aligned_cols=35 Identities=26% Similarity=0.639 Sum_probs=28.7
Q ss_pred cCCCCCCCCCCCcceecccCCCCcCCccccc--CCCCCceeE
Q 027730 25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCLD--YHKDHRAIQ 64 (219)
Q Consensus 25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~Hr~lQ 64 (219)
.|..|.. ...+||.+|. ..+|..|.. .|++|+++.
T Consensus 20 ~C~~H~e----~L~lfC~~d~-~~iC~~C~~~~eH~~H~~~~ 56 (57)
T 2egm_A 20 ICPKHQE----ALKLFCEVDE-EAICVVCRESRSHKQHSVVP 56 (57)
T ss_dssp BCTTTCC----BCCEEETTTT-EEECHHHHHSHHHHSSCEEC
T ss_pred cChhhCc----eeeEEcCCCC-cEEecccCCCCCCCCCcEec
Confidence 4999952 5789999997 889999964 799998764
No 10
>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}
Probab=88.61 E-value=0.084 Score=35.25 Aligned_cols=25 Identities=32% Similarity=0.797 Sum_probs=18.4
Q ss_pred CCCCcccccccc-cCC-----CCeeeecccc
Q 027730 112 GVTNTCEVCDRS-LLD-----SFRFCSLGCK 136 (219)
Q Consensus 112 g~~~~Ce~C~R~-L~d-----~~rFCSL~CK 136 (219)
+....||.|++. +.. +-||||++|-
T Consensus 4 ~~~~~CE~CG~~g~~~~F~~ksKRFCS~~Ca 34 (43)
T 2w0t_A 4 SEPAVCEMCGIVGTREAFFSKTKRFCSVSCS 34 (43)
T ss_dssp CCEEECTTTCCEEETTTSCTTTSSSSSHHHH
T ss_pred CceehhhhhcCcchhhhhccCCcceechhhh
Confidence 345689999984 333 4489999995
No 11
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=88.61 E-value=0.13 Score=37.44 Aligned_cols=37 Identities=35% Similarity=0.767 Sum_probs=29.2
Q ss_pred ccCCCCCCCCCCCcceecccCCCCcCCcccc--cCCCCCceeE
Q 027730 24 VQCKLHPDSHKSECNMYCLDCMNGAFCSLCL--DYHKDHRAIQ 64 (219)
Q Consensus 24 ~~C~~H~~~~knE~N~FCldC~~~~~C~~Cl--~~H~~Hr~lQ 64 (219)
..|..|.. ...++||.+|. ..+|..|. ..|++|+++-
T Consensus 60 ~~C~~H~~---e~l~~fC~~~~-~~iC~~C~~~~~H~~H~~~~ 98 (101)
T 2jun_A 60 LMCLEHED---EKVNMYCVTDD-QLICALCKLVGRHRDHQVAA 98 (101)
T ss_dssp CCCSSCSS---SCCCEEETTTT-EEECHHHHHHTTTSSSCBCC
T ss_pred CcCcCcCC---CcceEECCCCC-CccchhcCCCCCcCCCCeec
Confidence 36998863 23689999997 89999996 4899998654
No 12
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=84.37 E-value=0.64 Score=33.14 Aligned_cols=31 Identities=29% Similarity=0.553 Sum_probs=24.9
Q ss_pred CCCCCCCCCcccccccccCC----------CCeeeeccccc
Q 027730 107 PRPGKGVTNTCEVCDRSLLD----------SFRFCSLGCKI 137 (219)
Q Consensus 107 ~r~~kg~~~~Ce~C~R~L~d----------~~rFCSL~CKv 137 (219)
.++.+....+|+.|.+.|+. +-.|||..|-.
T Consensus 13 q~~~~~~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~ 53 (62)
T 2das_A 13 QQLTKPAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLS 53 (62)
T ss_dssp CCCSSCSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHH
T ss_pred cCCCCccccChhhccchhhcCceeeeecCchhheechHHHc
Confidence 45666788899999999983 45799999963
No 13
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=69.20 E-value=0.62 Score=31.54 Aligned_cols=24 Identities=38% Similarity=0.742 Sum_probs=19.4
Q ss_pred CCcccccccccCC-----CCeeeeccccc
Q 027730 114 TNTCEVCDRSLLD-----SFRFCSLGCKI 137 (219)
Q Consensus 114 ~~~Ce~C~R~L~d-----~~rFCSL~CKv 137 (219)
..+|+.|++.+.. +-+|||..|.-
T Consensus 18 ~~~C~~CG~~i~~~~~~r~krFCS~sCR~ 46 (49)
T 2l8e_A 18 LLKCEYCGKYAPAEQFRGSKRFCSMTCAK 46 (49)
T ss_dssp EEECTTTCCEEEGGGCTTTSSSCSHHHHH
T ss_pred CCcChhccCccccccCCCCCccCCHHHHh
Confidence 3579999999874 35899999974
No 14
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=57.62 E-value=1.5 Score=31.73 Aligned_cols=28 Identities=25% Similarity=0.758 Sum_probs=21.3
Q ss_pred CCcccccccccC----CC-Ceeeeccccccccc
Q 027730 114 TNTCEVCDRSLL----DS-FRFCSLGCKIVGTS 141 (219)
Q Consensus 114 ~~~Ce~C~R~L~----d~-~rFCSL~CKv~~~~ 141 (219)
...|-+|++... -. ..|||-.||..+..
T Consensus 9 ~~~CP~Cgkp~~W~~~~~~rPFCSeRCr~iDLg 41 (68)
T 1lv3_A 9 TVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLG 41 (68)
T ss_dssp EEECTTTCCEEECSSSSSCCSSSSHHHHHHHHS
T ss_pred cCcCCCCCCcccccccCCCCcccCHHHHhhhHH
Confidence 457999999985 23 46999999976544
No 15
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=40.29 E-value=10 Score=27.07 Aligned_cols=27 Identities=22% Similarity=0.705 Sum_probs=21.8
Q ss_pred CCCcceecccCCCCcCCcccccC-CCCCc
Q 027730 34 KSECNMYCLDCMNGAFCSLCLDY-HKDHR 61 (219)
Q Consensus 34 knE~N~FCldC~~~~~C~~Cl~~-H~~Hr 61 (219)
+.+...+|++|. ..||..|+.. |..-.
T Consensus 14 ~~~av~~C~~C~-~~~C~~Cl~~~h~~~~ 41 (101)
T 2jun_A 14 AQDAVKTCVTCE-VSYCDECLKATHPNKK 41 (101)
T ss_dssp CCBCCEEETTTT-EEECHHHHHHHSCSCS
T ss_pred CCCceEECCcCC-hHHhHHHCHHHhccCC
Confidence 456789999997 8999999986 87433
No 16
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=39.99 E-value=17 Score=26.62 Aligned_cols=30 Identities=23% Similarity=0.545 Sum_probs=21.7
Q ss_pred CCCCcceecccCCCC---cCCccccc--CCCCCce
Q 027730 33 HKSECNMYCLDCMNG---AFCSLCLD--YHKDHRA 62 (219)
Q Consensus 33 ~knE~N~FCldC~~~---~~C~~Cl~--~H~~Hr~ 62 (219)
.++|--..|.+|... +||..|-. .|.+|++
T Consensus 16 ~~ge~~Y~C~~C~~d~tcvlC~~CF~~s~H~gH~~ 50 (82)
T 3nis_A 16 KIGEPLYRCHECGCDDTCVLCIHCFNPKDHVNHHV 50 (82)
T ss_dssp CTTCEEEEETTTBSSTTCCBCTTTCCGGGGTTSCE
T ss_pred cCCCEEEEeeccCCCCCceEchhhCCCCCcCCceE
Confidence 456888999999754 46666644 6888864
No 17
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=39.40 E-value=17 Score=26.22 Aligned_cols=30 Identities=33% Similarity=0.678 Sum_probs=21.8
Q ss_pred CCCCcceecccCCCC---cCCccccc--CCCCCce
Q 027730 33 HKSECNMYCLDCMNG---AFCSLCLD--YHKDHRA 62 (219)
Q Consensus 33 ~knE~N~FCldC~~~---~~C~~Cl~--~H~~Hr~ 62 (219)
.++|-...|.+|... ++|..|-. .|.+|++
T Consensus 12 ~~ge~~Y~C~~C~~d~tc~lC~~CF~~~~H~gH~~ 46 (75)
T 3ny3_A 12 KVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRY 46 (75)
T ss_dssp CTTCEEEEETTTBSSTTCCBCHHHHHTSGGGGSCE
T ss_pred cCCCEEEECccCCCCCCeeEChHHCCCCCcCCceE
Confidence 457888999999754 46666633 6888874
No 18
>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.16 E-value=19 Score=25.43 Aligned_cols=29 Identities=34% Similarity=0.524 Sum_probs=21.9
Q ss_pred CCcccccccccC---C--CCeeeeccccccccch
Q 027730 114 TNTCEVCDRSLL---D--SFRFCSLGCKIVGTSK 142 (219)
Q Consensus 114 ~~~Ce~C~R~L~---d--~~rFCSL~CKv~~~~~ 142 (219)
.+.|-+|+|-=. | .-+-|||.||-..+..
T Consensus 19 ePvCvvCGryGeYICd~Td~DVCSlECK~~~l~~ 52 (60)
T 2yqp_A 19 EPICVVCGRYGEYICDKTDEDVCSLECKAKHLLQ 52 (60)
T ss_dssp SCCCSSSSSCCSEECSSSCCEESSHHHHHHHHHH
T ss_pred CceEEEecCccceeecCCCcchhhHHHHHHHHHH
Confidence 566999998643 3 5789999999766544
No 19
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=34.10 E-value=13 Score=30.48 Aligned_cols=32 Identities=25% Similarity=0.529 Sum_probs=24.5
Q ss_pred cceeeechhhhh---hcccceeeEEECCeeEEEeeC
Q 027730 71 HDVIRVSEIQKV---LDISGVQTYVINSARVVFLNE 103 (219)
Q Consensus 71 ~dVVRv~dIqkl---~D~S~IQtYvINsakVVfLn~ 103 (219)
++-|...|+..+ +-..+|+|| |||.-|||--.
T Consensus 19 ~nkv~MadLr~~l~~lGf~~V~Ty-I~SGNvvF~s~ 53 (183)
T 2hiy_A 19 KNKVVMAELRQELTNLGLEKVESY-INSGNIFFTSI 53 (183)
T ss_dssp CCCCCHHHHHHHHHHHTCEEEEEE-TTTTEEEEEEC
T ss_pred CCcccHHHHHHHHHHcCCccceEE-EecCCEEEecC
Confidence 344666777665 678899999 79999999644
No 20
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=32.93 E-value=16 Score=24.41 Aligned_cols=28 Identities=21% Similarity=0.573 Sum_probs=22.2
Q ss_pred ceecccCCCCcCCccccc--CCCCCceeEEE
Q 027730 38 NMYCLDCMNGAFCSLCLD--YHKDHRAIQIR 66 (219)
Q Consensus 38 N~FCldC~~~~~C~~Cl~--~H~~Hr~lQIR 66 (219)
-+-|..|.+--||..|.. .| .|..++|.
T Consensus 19 R~~C~~C~dyDLC~~C~~~~~H-~H~m~~~~ 48 (52)
T 1tot_A 19 RWHCTVCEDYDLCINCYNTKSH-THKMVKWG 48 (52)
T ss_dssp EEEESSSSSCEECHHHHHHHCC-CSSEEEEC
T ss_pred eEEcCCCCCchhHHHHHhCCCC-CCceEEec
Confidence 378999987789999955 55 78888775
No 21
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.17 E-value=17 Score=25.05 Aligned_cols=22 Identities=27% Similarity=0.629 Sum_probs=16.4
Q ss_pred CCcccccccccCC------CCeeeecccc
Q 027730 114 TNTCEVCDRSLLD------SFRFCSLGCK 136 (219)
Q Consensus 114 ~~~Ce~C~R~L~d------~~rFCSL~CK 136 (219)
...|.+|+. ..- ..+||||.|-
T Consensus 12 ~~~C~vC~~-~~kY~CPrC~~~yCSl~C~ 39 (56)
T 2yqq_A 12 TVVCVICLE-KPKYRCPACRVPYCSVVCF 39 (56)
T ss_dssp CCCCTTTCS-CCSEECTTTCCEESSHHHH
T ss_pred CCccCcCcC-CCeeeCCCCCCCeeCHHHH
Confidence 446999988 321 4799999996
No 22
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=26.30 E-value=11 Score=30.93 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=21.0
Q ss_pred hhhcccceeeEEECCeeEEEeeCCCCC
Q 027730 81 KVLDISGVQTYVINSARVVFLNERPQP 107 (219)
Q Consensus 81 kl~D~S~IQtYvINsakVVfLn~RPq~ 107 (219)
+.||+|.||.--.-++-|||-+.+|.+
T Consensus 21 E~fDiSh~~G~~~VasmVVf~~g~p~K 47 (159)
T 2nrr_A 21 EGIDISHLQGKYTVASLVVFEDGFPKK 47 (159)
T ss_dssp EEEEEECC---CCEEEEEEEETTEECG
T ss_pred EEEECCccCCccceEEEEEEeCCccCh
Confidence 458999999988889999999998874
No 23
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=23.99 E-value=31 Score=24.97 Aligned_cols=30 Identities=43% Similarity=0.773 Sum_probs=21.9
Q ss_pred eecccCCC---CcCCccccc------CC-CCCceeEEEec
Q 027730 39 MYCLDCMN---GAFCSLCLD------YH-KDHRAIQIRRS 68 (219)
Q Consensus 39 ~FCldC~~---~~~C~~Cl~------~H-~~Hr~lQIRRs 68 (219)
+-|+.|.+ --||..|.. .| ..|+...|.++
T Consensus 37 ykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~ 76 (82)
T 2fc7_A 37 WHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRS 76 (82)
T ss_dssp EEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSC
T ss_pred EECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCC
Confidence 66899986 579999953 45 47887777654
No 24
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=23.11 E-value=14 Score=27.87 Aligned_cols=29 Identities=24% Similarity=0.629 Sum_probs=21.8
Q ss_pred eecccCCCCcCCccccc--CCCCCceeEEEe
Q 027730 39 MYCLDCMNGAFCSLCLD--YHKDHRAIQIRR 67 (219)
Q Consensus 39 ~FCldC~~~~~C~~Cl~--~H~~Hr~lQIRR 67 (219)
.-|+.|.+--||..|.. .|..|+.++|-+
T Consensus 47 ykC~~C~d~DLC~~C~~~~~H~~H~f~~i~~ 77 (98)
T 2dip_A 47 YKCTECIEYHLCQECFDSYCHLSHTFTFREK 77 (98)
T ss_dssp EEESSSSSCEEEHHHHHTTSGGGSCEEECCS
T ss_pred EECCCCCCccHHHHHHccCCCCCCCeeEecC
Confidence 56888887789999955 577787766655
No 25
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=20.79 E-value=29 Score=23.30 Aligned_cols=29 Identities=24% Similarity=0.546 Sum_probs=18.9
Q ss_pred CCcccccccccCC------CCeeeeccccccccch
Q 027730 114 TNTCEVCDRSLLD------SFRFCSLGCKIVGTSK 142 (219)
Q Consensus 114 ~~~Ce~C~R~L~d------~~rFCSL~CKv~~~~~ 142 (219)
...|..|++.-.- ...|||-.|...+-..
T Consensus 17 ~~~C~~C~~~~~~~Cs~C~~~~YCs~~CQ~~~W~~ 51 (64)
T 2odd_A 17 SESCWNCGRKASETCSGCNTARYCGSFCQHKDWEK 51 (64)
T ss_dssp SSSCTTTSSCCCEEETTTSCCEESSHHHHHHHHHH
T ss_pred CCcCccccCCCcccCCCCCChhhCCHHHHHHHHHH
Confidence 3567778764321 4579999998765553
Done!