Query 027731
Match_columns 219
No_of_seqs 193 out of 1365
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 14:20:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027731.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027731hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14558 pyrH uridylate kinase 100.0 8.7E-41 1.9E-45 274.3 24.5 204 2-209 27-231 (231)
2 PRK00358 pyrH uridylate kinase 100.0 1.3E-40 2.8E-45 273.4 24.1 205 2-207 27-231 (231)
3 PRK14556 pyrH uridylate kinase 100.0 1.1E-40 2.5E-45 272.8 22.7 207 2-208 42-248 (249)
4 COG0528 PyrH Uridylate kinase 100.0 3.2E-40 7E-45 263.8 23.1 206 2-208 32-238 (238)
5 cd04239 AAK_UMPK-like AAK_UMPK 100.0 1E-39 2.3E-44 267.6 22.9 205 2-207 25-229 (229)
6 TIGR02075 pyrH_bact uridylate 100.0 2.4E-38 5.2E-43 260.1 23.4 205 2-207 28-233 (233)
7 COG0263 ProB Glutamate 5-kinas 100.0 2E-38 4.3E-43 266.0 21.0 205 2-211 32-262 (369)
8 cd04254 AAK_UMPK-PyrH-Ec UMP k 100.0 6.7E-38 1.5E-42 257.2 21.3 205 2-207 27-231 (231)
9 PRK14557 pyrH uridylate kinase 100.0 2.8E-37 6.2E-42 254.8 23.0 208 2-210 31-240 (247)
10 PRK13402 gamma-glutamyl kinase 100.0 7E-35 1.5E-39 252.4 22.3 209 2-212 31-261 (368)
11 PRK12314 gamma-glutamyl kinase 100.0 1.2E-34 2.6E-39 242.2 21.2 204 2-209 35-265 (266)
12 PTZ00489 glutamate 5-kinase; P 100.0 5.7E-34 1.2E-38 236.9 21.4 203 2-210 33-261 (264)
13 cd04253 AAK_UMPK-PyrH-Pf AAK_U 100.0 5.3E-34 1.1E-38 232.7 20.2 190 2-207 22-221 (221)
14 TIGR02076 pyrH_arch uridylate 100.0 1E-33 2.2E-38 231.1 20.8 191 2-207 21-221 (221)
15 cd02115 AAK Amino Acid Kinases 100.0 6.9E-34 1.5E-38 235.3 18.8 204 2-206 17-248 (248)
16 cd04256 AAK_P5CS_ProBA AAK_P5C 100.0 1.7E-33 3.7E-38 236.8 20.7 203 2-207 35-284 (284)
17 cd04242 AAK_G5K_ProB AAK_G5K_P 100.0 4.2E-33 9.1E-38 231.4 21.8 200 2-207 25-251 (251)
18 PRK05429 gamma-glutamyl kinase 100.0 3.8E-33 8.2E-38 243.0 22.0 206 2-212 34-265 (372)
19 TIGR01027 proB glutamate 5-kin 100.0 8.2E-33 1.8E-37 240.1 21.8 206 2-212 26-257 (363)
20 cd04261 AAK_AKii-LysC-BS AAK_A 100.0 3.4E-32 7.5E-37 224.4 20.7 196 2-207 19-239 (239)
21 cd04246 AAK_AK-DapG-like AAK_A 100.0 4.4E-32 9.5E-37 223.8 21.3 196 2-207 19-239 (239)
22 cd04241 AAK_FomA-like AAK_FomA 100.0 9.3E-33 2E-37 229.5 16.3 197 2-206 27-252 (252)
23 cd04255 AAK_UMPK-MosAB AAK_UMP 100.0 7.5E-32 1.6E-36 224.3 21.6 194 2-207 52-262 (262)
24 cd04234 AAK_AK AAK_AK: Amino A 100.0 1.5E-31 3.3E-36 219.0 20.5 186 2-207 19-227 (227)
25 TIGR00656 asp_kin_monofn aspar 100.0 4.4E-31 9.6E-36 232.9 20.6 198 2-209 20-244 (401)
26 COG0527 LysC Aspartokinases [A 100.0 3.6E-31 7.8E-36 234.1 19.8 202 2-212 21-293 (447)
27 PRK08841 aspartate kinase; Val 100.0 1.1E-30 2.4E-35 228.8 22.0 198 2-209 21-243 (392)
28 COG1608 Predicted archaeal kin 100.0 4.6E-31 9.9E-36 211.2 16.3 202 2-208 28-252 (252)
29 KOG1154 Gamma-glutamyl kinase 100.0 4E-31 8.7E-36 209.9 15.8 206 2-210 36-277 (285)
30 PRK14058 acetylglutamate/acety 100.0 1E-30 2.2E-35 219.0 18.8 201 2-208 16-267 (268)
31 cd04260 AAK_AKi-DapG-BS AAK_AK 100.0 1.1E-29 2.3E-34 210.1 20.6 196 2-207 19-244 (244)
32 COG0548 ArgB Acetylglutamate k 100.0 2E-29 4.4E-34 207.2 19.8 202 2-208 22-265 (265)
33 CHL00202 argB acetylglutamate 100.0 6.3E-29 1.4E-33 209.6 20.6 202 2-207 43-283 (284)
34 PLN02512 acetylglutamate kinas 100.0 1.3E-28 2.9E-33 209.8 21.7 203 2-208 67-309 (309)
35 cd04244 AAK_AK-LysC-like AAK_A 100.0 8.6E-29 1.9E-33 209.7 20.4 155 44-207 119-298 (298)
36 PRK06635 aspartate kinase; Rev 100.0 5.6E-29 1.2E-33 219.8 19.7 198 2-209 21-243 (404)
37 PRK07431 aspartate kinase; Pro 100.0 8E-29 1.7E-33 227.9 20.9 198 2-210 21-246 (587)
38 TIGR01092 P5CS delta l-pyrroli 100.0 1.1E-28 2.5E-33 230.4 21.7 206 2-210 33-277 (715)
39 cd04240 AAK_UC AAK_UC: Unchara 100.0 6.1E-29 1.3E-33 200.0 16.7 169 14-206 24-203 (203)
40 PRK08210 aspartate kinase I; R 100.0 2.1E-28 4.5E-33 216.1 20.7 198 2-209 21-248 (403)
41 PRK00942 acetylglutamate kinas 100.0 5.7E-28 1.2E-32 203.9 19.9 201 2-209 43-283 (283)
42 cd04259 AAK_AK-DapDC AAK_AK-Da 100.0 8.6E-28 1.9E-32 203.0 20.2 156 43-207 111-295 (295)
43 cd04250 AAK_NAGK-C AAK_NAGK-C: 100.0 5E-28 1.1E-32 203.9 18.2 201 2-206 34-279 (279)
44 PLN02418 delta-1-pyrroline-5-c 100.0 7.8E-28 1.7E-32 224.6 21.1 206 2-210 41-285 (718)
45 cd04238 AAK_NAGK-like AAK_NAGK 100.0 2.2E-28 4.7E-33 203.8 15.6 198 2-206 18-256 (256)
46 cd04251 AAK_NAGK-UC AAK_NAGK-U 100.0 3E-28 6.6E-33 202.8 16.3 192 2-206 15-257 (257)
47 TIGR00657 asp_kinases aspartat 100.0 3E-27 6.5E-32 210.8 20.9 153 49-210 111-285 (441)
48 PRK06291 aspartate kinase; Pro 100.0 3.4E-27 7.3E-32 211.5 21.3 158 43-209 122-304 (465)
49 cd04247 AAK_AK-Hom3 AAK_AK-Hom 100.0 3.7E-27 8E-32 199.6 20.0 157 44-209 126-306 (306)
50 cd04245 AAK_AKiii-YclM-BS AAK_ 100.0 2.7E-27 5.8E-32 199.1 17.1 156 43-207 112-288 (288)
51 cd04249 AAK_NAGK-NC AAK_NAGK-N 100.0 2.9E-27 6.3E-32 196.6 17.2 197 2-206 18-252 (252)
52 cd04257 AAK_AK-HSDH AAK_AK-HSD 100.0 1E-26 2.2E-31 196.6 19.4 155 44-207 118-294 (294)
53 PRK08373 aspartate kinase; Val 100.0 1.5E-26 3.2E-31 198.5 20.6 157 43-210 102-281 (341)
54 PRK12353 putative amino acid k 100.0 7.9E-27 1.7E-31 198.8 18.5 200 2-208 30-314 (314)
55 cd04235 AAK_CK AAK_CK: Carbama 100.0 1.4E-26 3E-31 195.4 19.3 199 2-207 29-308 (308)
56 cd04243 AAK_AK-HSDH-like AAK_A 99.9 2.3E-26 4.9E-31 194.3 19.5 155 44-207 117-293 (293)
57 TIGR00746 arcC carbamate kinas 99.9 1.3E-25 2.7E-30 190.4 20.8 198 2-207 30-309 (310)
58 PRK09084 aspartate kinase III; 99.9 7.9E-26 1.7E-30 201.6 19.5 157 43-209 109-290 (448)
59 PRK09034 aspartate kinase; Rev 99.9 2.3E-25 4.9E-30 199.0 21.1 159 43-210 112-291 (454)
60 cd04258 AAK_AKiii-LysC-EC AAK_ 99.9 1E-25 2.2E-30 189.9 17.3 158 41-207 111-292 (292)
61 PRK05925 aspartate kinase; Pro 99.9 2.7E-25 5.9E-30 197.0 20.4 158 43-209 102-281 (440)
62 PF00696 AA_kinase: Amino acid 99.9 2E-25 4.3E-30 184.1 17.1 182 2-186 21-242 (242)
63 TIGR02078 AspKin_pair Pyrococc 99.9 5.2E-25 1.1E-29 187.9 19.6 153 42-209 96-271 (327)
64 cd04237 AAK_NAGS-ABP AAK_NAGS- 99.9 1.4E-24 3E-29 182.7 19.4 197 2-206 37-280 (280)
65 TIGR01890 N-Ac-Glu-synth amino 99.9 1.2E-24 2.5E-29 193.6 19.2 201 2-210 36-281 (429)
66 TIGR00761 argB acetylglutamate 99.9 5.5E-25 1.2E-29 180.7 15.3 177 2-184 17-231 (231)
67 cd04252 AAK_NAGK-fArgBP AAK_NA 99.9 2.5E-24 5.5E-29 178.4 18.4 195 2-206 16-248 (248)
68 PLN02551 aspartokinase 99.9 9.5E-25 2.1E-29 196.9 17.0 161 41-210 163-350 (521)
69 PRK12352 putative carbamate ki 99.9 8.9E-24 1.9E-28 179.4 21.2 200 2-208 32-315 (316)
70 PRK12454 carbamate kinase-like 99.9 7.6E-24 1.6E-28 178.6 19.9 200 2-208 32-313 (313)
71 cd04248 AAK_AK-Ectoine AAK_AK- 99.9 2.5E-24 5.4E-29 180.5 16.3 157 41-207 131-304 (304)
72 PRK09181 aspartate kinase; Val 99.9 3.9E-24 8.6E-29 191.1 17.5 156 44-209 140-312 (475)
73 PRK05279 N-acetylglutamate syn 99.9 8.9E-24 1.9E-28 188.6 19.3 201 2-210 44-293 (441)
74 COG2054 Uncharacterized archae 99.9 2.6E-23 5.6E-28 159.5 16.2 178 10-208 22-210 (212)
75 PRK09466 metL bifunctional asp 99.9 6.9E-24 1.5E-28 199.8 15.7 157 43-208 122-300 (810)
76 PRK08961 bifunctional aspartat 99.9 1.3E-23 2.8E-28 200.4 17.1 153 49-210 125-307 (861)
77 cd04236 AAK_NAGS-Urea AAK_NAGS 99.9 2.9E-23 6.4E-28 172.9 16.6 187 2-206 55-271 (271)
78 PRK12686 carbamate kinase; Rev 99.9 2.1E-22 4.6E-27 170.2 20.1 199 2-207 30-311 (312)
79 PRK09436 thrA bifunctional asp 99.9 6.3E-23 1.4E-27 194.3 16.6 159 42-209 118-298 (819)
80 PRK12354 carbamate kinase; Rev 99.9 1.2E-21 2.6E-26 164.9 19.4 117 89-211 168-303 (307)
81 PRK04531 acetylglutamate kinas 99.9 9.9E-21 2.1E-25 165.8 19.8 175 2-210 54-251 (398)
82 PRK09411 carbamate kinase; Rev 99.9 2.7E-20 5.9E-25 155.6 18.3 198 3-207 32-296 (297)
83 PLN02825 amino-acid N-acetyltr 99.9 2.6E-20 5.7E-25 167.3 19.1 202 2-210 36-366 (515)
84 KOG0456 Aspartate kinase [Amin 99.8 9.7E-21 2.1E-25 160.5 10.1 164 38-210 187-377 (559)
85 COG0549 ArcC Carbamate kinase 99.7 3.7E-16 8.1E-21 128.3 19.5 199 3-208 31-312 (312)
86 KOG2436 Acetylglutamate kinase 98.3 5.1E-06 1.1E-10 73.7 10.0 140 2-142 113-287 (520)
87 COG1778 Low specificity phosph 79.1 2.6 5.7E-05 32.5 3.4 56 130-194 11-66 (170)
88 TIGR02726 phenyl_P_delta pheny 76.9 6.9 0.00015 30.4 5.3 60 130-199 10-70 (169)
89 PF03437 BtpA: BtpA family; I 69.0 13 0.00027 31.1 5.3 33 179-211 200-235 (254)
90 PRK10530 pyridoxal phosphate ( 67.2 16 0.00034 30.0 5.7 29 169-197 26-54 (272)
91 PRK01158 phosphoglycolate phos 67.0 11 0.00024 30.1 4.6 27 170-196 27-53 (230)
92 PRK10976 putative hydrolase; P 63.9 14 0.0003 30.4 4.8 29 169-197 25-53 (266)
93 PRK15126 thiamin pyrimidine py 61.8 20 0.00043 29.6 5.4 29 169-197 25-53 (272)
94 PTZ00174 phosphomannomutase; P 61.4 14 0.00031 30.2 4.4 29 170-198 29-57 (247)
95 TIGR01487 SPP-like sucrose-pho 59.9 19 0.00042 28.5 4.8 28 169-196 24-51 (215)
96 TIGR01670 YrbI-phosphatas 3-de 59.8 27 0.00059 26.4 5.4 13 129-141 3-15 (154)
97 PRK10513 sugar phosphate phosp 58.2 20 0.00043 29.5 4.7 29 169-197 26-54 (270)
98 PF00994 MoCF_biosynth: Probab 55.0 84 0.0018 23.2 7.3 67 54-125 18-84 (144)
99 PF01872 RibD_C: RibD C-termin 53.6 19 0.00041 28.3 3.7 28 2-29 122-149 (200)
100 COG1058 CinA Predicted nucleot 52.1 16 0.00034 30.6 3.0 27 2-29 49-76 (255)
101 TIGR01458 HAD-SF-IIA-hyp3 HAD- 49.1 85 0.0018 25.9 7.1 40 3-42 26-67 (257)
102 PRK03669 mannosyl-3-phosphogly 46.9 41 0.00089 27.8 4.9 53 126-197 6-58 (271)
103 PLN02887 hydrolase family prot 41.2 59 0.0013 30.6 5.4 29 169-197 331-359 (580)
104 PLN03017 trehalose-phosphatase 40.3 97 0.0021 27.4 6.3 66 114-197 98-166 (366)
105 PRK03673 hypothetical protein; 39.3 2.1E+02 0.0045 25.6 8.3 71 54-130 22-92 (396)
106 PF11760 CbiG_N: Cobalamin syn 38.9 49 0.0011 22.7 3.4 27 97-127 51-77 (84)
107 PF12000 Glyco_trans_4_3: Gkyc 38.4 33 0.00071 26.8 2.8 24 2-25 52-78 (171)
108 TIGR01689 EcbF-BcbF capsule bi 38.1 42 0.00092 24.8 3.2 20 3-22 29-48 (126)
109 PF08645 PNK3P: Polynucleotide 37.9 36 0.00079 26.0 3.0 19 3-21 34-52 (159)
110 COG0560 SerB Phosphoserine pho 37.7 36 0.00077 27.4 3.0 21 5-25 84-104 (212)
111 cd01427 HAD_like Haloacid deha 36.4 47 0.001 23.1 3.3 22 3-24 29-50 (139)
112 PRK05265 pyridoxine 5'-phospha 35.9 1E+02 0.0022 25.6 5.3 84 89-196 118-201 (239)
113 PF11305 DUF3107: Protein of u 35.3 51 0.0011 22.0 2.9 27 110-136 20-47 (74)
114 PF13344 Hydrolase_6: Haloacid 34.8 1.5E+02 0.0033 20.5 5.6 40 3-42 19-60 (101)
115 PRK09484 3-deoxy-D-manno-octul 34.5 44 0.00095 26.0 3.0 13 129-141 23-35 (183)
116 PF12710 HAD: haloacid dehalog 34.4 45 0.00097 25.5 3.0 20 4-23 95-114 (192)
117 cd00885 cinA Competence-damage 33.6 2.2E+02 0.0048 21.9 7.9 68 54-126 20-87 (170)
118 PRK01215 competence damage-ind 33.4 2.9E+02 0.0062 23.1 8.1 68 54-126 24-91 (264)
119 TIGR00259 thylakoid_BtpA membr 33.3 1.4E+02 0.0031 24.9 5.9 44 167-210 186-234 (257)
120 COG2044 Predicted peroxiredoxi 33.1 1.2E+02 0.0026 22.3 4.8 64 110-186 19-82 (120)
121 PRK10187 trehalose-6-phosphate 32.8 82 0.0018 26.2 4.5 58 127-198 14-72 (266)
122 PF10686 DUF2493: Protein of u 32.6 67 0.0015 21.1 3.2 21 3-23 20-40 (71)
123 PF07521 RMMBL: RNA-metabolisi 32.2 36 0.00078 19.9 1.7 18 3-22 23-40 (43)
124 TIGR01670 YrbI-phosphatas 3-de 32.0 68 0.0015 24.1 3.6 19 6-24 36-54 (154)
125 TIGR01491 HAD-SF-IB-PSPlk HAD- 32.0 60 0.0013 25.0 3.4 21 3-23 85-105 (201)
126 COG1058 CinA Predicted nucleot 31.7 3.1E+02 0.0067 22.9 8.2 71 54-130 22-92 (255)
127 PLN02423 phosphomannomutase 31.6 85 0.0018 25.7 4.4 52 127-198 7-58 (245)
128 TIGR00177 molyb_syn molybdenum 31.3 2.2E+02 0.0048 21.1 7.9 65 54-123 28-92 (144)
129 PRK10444 UMP phosphatase; Prov 30.8 2.5E+02 0.0054 23.0 7.1 39 3-41 22-62 (248)
130 PRK10628 LigB family dioxygena 30.0 44 0.00094 27.8 2.4 29 2-33 129-157 (246)
131 COG0303 MoeA Molybdopterin bio 29.6 3.9E+02 0.0085 23.9 8.4 71 54-131 204-274 (404)
132 TIGR00338 serB phosphoserine p 27.7 1.1E+02 0.0024 24.0 4.3 21 3-23 90-110 (219)
133 smart00775 LNS2 LNS2 domain. T 27.6 77 0.0017 24.1 3.3 21 3-23 32-52 (157)
134 cd00003 PNPsynthase Pyridoxine 27.5 1.7E+02 0.0037 24.2 5.3 73 108-197 128-200 (234)
135 PF13511 DUF4124: Domain of un 27.4 61 0.0013 20.0 2.3 25 119-143 6-32 (60)
136 TIGR01684 viral_ppase viral ph 27.4 1.3E+02 0.0028 25.8 4.8 23 3-25 151-173 (301)
137 PRK03670 competence damage-ind 26.4 3.8E+02 0.0082 22.3 7.4 68 54-126 21-89 (252)
138 COG0351 ThiD Hydroxymethylpyri 25.8 1.6E+02 0.0034 24.8 4.9 74 56-130 88-175 (263)
139 smart00463 SMR Small MutS-rela 25.7 1.1E+02 0.0023 20.1 3.4 23 3-25 18-42 (80)
140 PLN02151 trehalose-phosphatase 25.7 1.8E+02 0.0039 25.6 5.5 66 117-198 88-154 (354)
141 TIGR01457 HAD-SF-IIA-hyp2 HAD- 25.6 2.1E+02 0.0046 23.3 5.8 38 4-41 23-62 (249)
142 TIGR00200 cinA_nterm competenc 25.6 4.5E+02 0.0098 23.6 8.2 68 54-126 21-88 (413)
143 TIGR01490 HAD-SF-IB-hyp1 HAD-s 25.5 99 0.0021 23.9 3.6 21 4-24 93-113 (202)
144 PRK14501 putative bifunctional 25.4 2.3E+02 0.005 27.3 6.7 70 114-198 479-550 (726)
145 TIGR00099 Cof-subfamily Cof su 25.3 1.4E+02 0.0031 24.2 4.7 50 129-197 1-50 (256)
146 PRK01158 phosphoglycolate phos 24.7 91 0.002 24.7 3.4 21 3-23 25-45 (230)
147 smart00852 MoCF_biosynth Proba 24.2 2.8E+02 0.0061 20.1 6.4 67 55-126 20-86 (135)
148 PRK02655 psbI photosystem II r 23.9 55 0.0012 18.7 1.3 16 134-149 20-35 (38)
149 KOG2728 Uncharacterized conser 23.8 1.1E+02 0.0023 25.7 3.5 14 13-26 29-42 (302)
150 COG2875 CobM Precorrin-4 methy 23.7 1.7E+02 0.0036 24.3 4.6 21 3-23 64-84 (254)
151 PF03740 PdxJ: Pyridoxal phosp 23.5 1.7E+02 0.0037 24.2 4.7 76 108-199 129-205 (239)
152 TIGR01508 rib_reduct_arch 2,5- 23.2 1.3E+02 0.0027 24.1 3.9 11 8-18 106-116 (210)
153 PF02601 Exonuc_VII_L: Exonucl 23.1 1.1E+02 0.0023 26.1 3.7 27 2-28 59-90 (319)
154 PLN02645 phosphoglycolate phos 23.0 2.5E+02 0.0053 23.9 5.8 39 3-41 49-89 (311)
155 PRK05625 5-amino-6-(5-phosphor 22.9 1.3E+02 0.0029 23.9 4.0 12 7-18 109-120 (217)
156 PF01751 Toprim: Toprim domain 22.5 1.1E+02 0.0025 21.0 3.1 24 112-135 47-70 (100)
157 PRK10976 putative hydrolase; P 22.2 1.1E+02 0.0023 25.1 3.3 20 3-22 24-43 (266)
158 TIGR01488 HAD-SF-IB Haloacid D 22.1 1E+02 0.0023 23.0 3.1 21 3-23 78-98 (177)
159 COG1915 Uncharacterized conser 21.8 1.1E+02 0.0024 26.5 3.3 20 2-21 188-207 (415)
160 PRK09552 mtnX 2-hydroxy-3-keto 21.5 1E+02 0.0023 24.4 3.1 21 3-23 79-99 (219)
161 COG1979 Uncharacterized oxidor 21.3 1.4E+02 0.0031 26.1 3.9 28 3-30 74-101 (384)
162 PHA03398 viral phosphatase sup 21.2 1.8E+02 0.0039 25.0 4.5 21 3-23 153-173 (303)
163 cd00209 DHFR Dihydrofolate red 21.1 1.5E+02 0.0032 22.4 3.8 25 3-28 80-104 (158)
164 PRK00549 competence damage-ind 21.1 4.6E+02 0.0099 23.5 7.3 68 54-126 21-88 (414)
165 COG1576 Uncharacterized conser 21.0 1.3E+02 0.0029 23.1 3.3 22 2-23 84-105 (155)
166 TIGR00227 ribD_Cterm riboflavi 20.6 1.6E+02 0.0034 23.4 4.0 18 7-24 134-151 (216)
167 cd00758 MoCF_BD MoCF_BD: molyb 20.5 3.4E+02 0.0074 19.7 7.5 65 54-123 20-84 (133)
168 TIGR01487 SPP-like sucrose-pho 20.5 1.2E+02 0.0027 23.8 3.4 21 3-23 23-43 (215)
169 cd00886 MogA_MoaB MogA_MoaB fa 20.5 3.7E+02 0.0081 20.1 6.7 66 54-124 21-88 (152)
170 PF04122 CW_binding_2: Putativ 20.4 2.2E+02 0.0048 19.1 4.2 32 171-202 42-73 (92)
171 PRK12702 mannosyl-3-phosphogly 20.2 2.1E+02 0.0045 24.6 4.7 27 170-196 25-51 (302)
172 PRK09444 pntB pyridine nucleot 20.1 2.3E+02 0.0049 25.9 5.1 21 4-24 296-316 (462)
No 1
>PRK14558 pyrH uridylate kinase; Provisional
Probab=100.00 E-value=8.7e-41 Score=274.33 Aligned_cols=204 Identities=42% Similarity=0.734 Sum_probs=176.6
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccc-cccc
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFR-MSEV 80 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~-~~~~ 80 (219)
+++++|+++++.|+++|||||||+|++++... +++....+.+++.++++|..++...|.++|+++..+.... ..++
T Consensus 27 ~la~~i~~~~~~g~~viiV~GgGs~~~g~~~~---~~~~~~~d~ig~~~~~ln~~~~~~~l~~~gi~a~~~~~~~~~~~~ 103 (231)
T PRK14558 27 YLVNEIKSVVEYGFKIGIVIGAGNLFRGVELK---ELSPTRADQIGMLGTVINALYLKDIFEKSGLKAVIVSQIVNLPSV 103 (231)
T ss_pred HHHHHHHHHHHCCCeEEEEECccHHHHHHhcc---CCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEeccccccchh
Confidence 68999999999999999999999998876632 3555567888888899998877899999999987655331 1111
Q ss_pred cchHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHh
Q 027731 81 AEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVT 160 (219)
Q Consensus 81 ~~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~ 160 (219)
. ++....+..+|+.|.|||++|+.+.++++||++|+++|..++|+++++||||||||++||+.+|++++++++++.|+.
T Consensus 104 ~-~~~~~~i~~ll~~g~vpV~~G~~~~~~~~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~ 182 (231)
T PRK14558 104 E-PINYDDIELYFRAGYIVIFAGGTSNPFFTTDTAAALRAVEMKADILIKATKVDGIYDKDPKKFPDAKKIDHLTFSEAI 182 (231)
T ss_pred h-hhhHHHHHHHHHCCCEEEEECCCCCCCCCcHHHHHHHHHHcCCCEEEEEecCCeeEccCCCCCCCCeEcccccHHHHH
Confidence 1 111244567899999999999888889999999999999999999999999999999999999999999999999988
Q ss_pred hCCCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEecC
Q 027731 161 SKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 209 (219)
Q Consensus 161 ~~g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~ 209 (219)
++|..++|+.++++|.++|++++|+|+++|+.+.+++.|+..||+|.++
T Consensus 183 ~~g~~~~d~~a~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~~ 231 (231)
T PRK14558 183 KMGLKVMDTEAFSICKKYGITILVINFFEPGNLLKALKGENVGTLVVPD 231 (231)
T ss_pred HcCcccccHHHHHHHHHCCCCEEEEeCCCCCHHHHHHCCCCCcEEeCCC
Confidence 8888899999999999999999999999999999999999999999763
No 2
>PRK00358 pyrH uridylate kinase; Provisional
Probab=100.00 E-value=1.3e-40 Score=273.39 Aligned_cols=205 Identities=65% Similarity=1.054 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccccc
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA 81 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~ 81 (219)
+++++|+++++.|+++|||||||++++++... ..++++...+.++++++++|+.+++..|.++|+++..+++.......
T Consensus 27 ~~~~~i~~~~~~g~~vvlV~gGG~~a~~~~~~-~~~~~~~~~~~~~~~~~~l~~~ll~~~l~~~Gi~a~~~~~~~~~~~~ 105 (231)
T PRK00358 27 RIAEEIKEVVELGVEVAIVVGGGNIFRGYIGA-AAGMDRATADYMGMLATVMNALALQDALERAGVDTRVQSAIPMPQVA 105 (231)
T ss_pred HHHHHHHHHHHCCCeEEEEECCCHHHHHHHHh-hcCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEechhhccccc
Confidence 67999999999999999999999999887532 23566666788999999999988889999999999765554433333
Q ss_pred chHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhh
Q 027731 82 EPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTS 161 (219)
Q Consensus 82 ~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~ 161 (219)
.++..+.+.++|++|.|||++++.+.++.+||++|+++|.+|+|++|+++|||||||++||+.+|++++|++++++|+.+
T Consensus 106 ~~~~~~~~~~~l~~g~vPVv~g~~~~~~~ssD~~A~~lA~~l~A~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~ 185 (231)
T PRK00358 106 EPYIRRRAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKDPDAKKYDRLTYDEVLE 185 (231)
T ss_pred CcccHHHHHHHHHCCCEEEEECCCCCCCCCchHHHHHHHHHcCCCEEEEeeCcCceEcCCCCCCCCCEEeeEecHHHHHH
Confidence 33334556688999999999987777889999999999999999999999999999999999999999999999999877
Q ss_pred CCCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731 162 KDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 207 (219)
Q Consensus 162 ~g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~ 207 (219)
.|.+.+|++++++|.++|++++|+|+++|+.|.++++|+..||+|.
T Consensus 186 ~g~~~~d~~a~~~a~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~ 231 (231)
T PRK00358 186 KGLKVMDATAISLARDNKIPIIVFNMNKPGNLKRVVKGEHIGTLVS 231 (231)
T ss_pred cCCcchhHHHHHHHHHcCCcEEEECCCCchHHHHHHCCCCCCEEeC
Confidence 7777899999999999999999999999999999999998999983
No 3
>PRK14556 pyrH uridylate kinase; Provisional
Probab=100.00 E-value=1.1e-40 Score=272.83 Aligned_cols=207 Identities=42% Similarity=0.697 Sum_probs=187.7
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccccc
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA 81 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~ 81 (219)
+++++|+++.+.|+++.||.|||.++|+.......|+++...|.++|+++++|+.+++.+|.+.|+++..+++.....+.
T Consensus 42 ~~a~~i~~~~~~g~~i~iVvGGGni~Rg~~~~~~~~~~r~~~D~~GmlaT~iNal~l~~~l~~~~~~~~v~sa~~~~~~~ 121 (249)
T PRK14556 42 PIINQIKTLTNFGVELALVVGGGNILRGGRANFGNKIRRATADSMGMIATMINALALRDMLISEGVDAEVFSAKGVDGLL 121 (249)
T ss_pred HHHHHHHHHHhCCcEEEEEECCCHHHhCchhhccCCCchhhhhHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccCcCC
Confidence 68999999999999999999999999984432114688889999999999999999999999999999988887766666
Q ss_pred chHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhh
Q 027731 82 EPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTS 161 (219)
Q Consensus 82 ~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~ 161 (219)
++|..+++.++|+.|.|+|+.++.|.++++||++|+++|..++||.|+++|||||||++||+++|++++++++++.|..+
T Consensus 122 e~~~~~~~~~~l~~g~vvi~~gg~G~p~~StD~lAallA~~l~Ad~Lii~TdVDGVYd~DP~~~p~A~~i~~I~~~e~~~ 201 (249)
T PRK14556 122 KVASAHEFNQELAKGRVLIFAGGTGNPFVTTDTTASLRAVEIGADALLKATTVNGVYDKDPNKYSDAKRFDKVTFSEVVS 201 (249)
T ss_pred CCCCHHHHHHHHhCCCEEEEECCCCCCcCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCceEeeEEchhhhcc
Confidence 77766777889999999999998889999999999999999999999999999999999999999999999999988776
Q ss_pred CCCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEec
Q 027731 162 KDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 208 (219)
Q Consensus 162 ~g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~ 208 (219)
.+..+|+..|++.+.++|+|++|+|+++|+.|.+++.|+..||+|.-
T Consensus 202 ~~l~vmd~~A~~~a~~~gIpi~I~ng~~~~~L~~~l~Ge~~GT~i~~ 248 (249)
T PRK14556 202 KELNVMDLGAFTQCRDFGIPIYVFDLTQPNALVDAVLDSKYGTWVTL 248 (249)
T ss_pred cchHhHHHHHHHHHHHCCCcEEEECCCCchHHHHHHcCCCCceEEEe
Confidence 66678899999999999999999999999999999999999999963
No 4
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.2e-40 Score=263.84 Aligned_cols=206 Identities=61% Similarity=0.976 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccccc
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA 81 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~ 81 (219)
+++++|+++.+.|+++.||.|||.++|++.... .|+++...|+|+++++++|+.+++.+|.+.|+++..++....+.+.
T Consensus 32 ~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~~-~g~~r~~~D~mGmlaTvmNal~L~~aL~~~~~~~~v~sai~~~~~~ 110 (238)
T COG0528 32 RIANEIKELVDLGVEVAVVVGGGNIARGYIGAA-AGMDRVTADYMGMLATVMNALALQDALERLGVDTRVQSAIAMPQVA 110 (238)
T ss_pred HHHHHHHHHHhcCcEEEEEECCCHHHHhHHHHH-cCCchhhhhHHHHHHHHHHHHHHHHHHHhcCCcceecccccCcccc
Confidence 689999999999999999999999999987665 4899999999999999999999999999999999988877766666
Q ss_pred chHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCceEEeeec-cCccccCCCCCCCCCcccccccHHHHh
Q 027731 82 EPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN-VDGVYDDNPRRNPNARLLDTLTYQEVT 160 (219)
Q Consensus 82 ~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~liiltD-V~Gv~~~dP~~~~~a~~i~~i~~~e~~ 160 (219)
++|..++..++|+.|.|+|+.+..++|+.++|+.|++.|..++||.++..|+ |||||++||+++|+|+.++++||.|+.
T Consensus 111 e~~~~~~A~~~l~~grVvIf~gGtg~P~fTTDt~AALrA~ei~ad~ll~atn~VDGVY~~DPkk~pdA~~~~~Lty~e~l 190 (238)
T COG0528 111 EPYSRREAIRHLEKGRVVIFGGGTGNPGFTTDTAAALRAEEIEADVLLKATNKVDGVYDADPKKDPDAKKYDTLTYDEVL 190 (238)
T ss_pred CccCHHHHHHHHHcCCEEEEeCCCCCCCCchHHHHHHHHHHhCCcEEEEeccCCCceeCCCCCCCCCceecccCCHHHHH
Confidence 7777777889999999999999888999999999999999999999999995 999999999999999999999999999
Q ss_pred hCCCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEec
Q 027731 161 SKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 208 (219)
Q Consensus 161 ~~g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~ 208 (219)
+.+..+||+.|+..+.++++|++++|.++++++.+++.|+..||.|.+
T Consensus 191 ~~~l~vmD~tA~~l~~~~~i~i~Vfn~~~~~~l~~~~~ge~~gT~V~~ 238 (238)
T COG0528 191 KIGLKVMDPTAFSLARDNGIPIIVFNINKPGNLKRALKGEEVGTIVEP 238 (238)
T ss_pred HhcCeeecHHHHHHHHHcCCcEEEEeCCCCccHHHHHcCCCCceEecC
Confidence 888899999999999999999999999999999999999999999863
No 5
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=100.00 E-value=1e-39 Score=267.61 Aligned_cols=205 Identities=63% Similarity=1.001 Sum_probs=177.5
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccccc
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA 81 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~ 81 (219)
+++++|+++++.|+++|||||||++++++.... +++++...+++++.++++|+.+++..|.++|+++..+++.+.....
T Consensus 25 ~~a~~i~~~~~~g~~vvvV~ggG~~a~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~Gi~a~~~~~~~~~~~~ 103 (229)
T cd04239 25 EIAREIKEVVDLGVEVAIVVGGGNIARGYIAAA-RGMPRATADYIGMLATVMNALALQDALEKLGVKTRVMSAIPMQGVA 103 (229)
T ss_pred HHHHHHHHHHHCCCEEEEEECCChHHhhHHHhh-cCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCHHHHhhhh
Confidence 578899999999999999999999877655432 3456666788999999999999999999999999876666443332
Q ss_pred chHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhh
Q 027731 82 EPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTS 161 (219)
Q Consensus 82 ~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~ 161 (219)
.++-.+.+.++++.|.|||++|+.|.++++||++|+++|..++|++|+|+|||||||++||+.+|++++|++++++|+.+
T Consensus 104 ~~~~~~~l~~~l~~g~ipVi~g~~g~~~~~sD~~A~~lA~~l~a~~li~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~ 183 (229)
T cd04239 104 EPYIRRRAIRHLEKGRIVIFGGGTGNPGFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKNPDAKKYDRISYDELLK 183 (229)
T ss_pred ccccHHHHHHHHhCCCEEEEeCccCCCCCCcHHHHHHHHHHcCCCEEEEEECCCcccCCCCCCCCCCeEEeEEcHHHHHH
Confidence 22212345678999999999999888899999999999999999999999999999999999999999999999999888
Q ss_pred CCCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731 162 KDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 207 (219)
Q Consensus 162 ~g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~ 207 (219)
+..+.+|+.+++.+.+.|++++|+|+++|+.+.++++|+..||+|.
T Consensus 184 ~~~~~~~~~a~~~~~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~ 229 (229)
T cd04239 184 KGLKVMDATALTLCRRNKIPIIVFNGLKPGNLLRALKGEHVGTLIE 229 (229)
T ss_pred HhcCCccHHHHHHHHHCCCeEEEECCCChhHHHHHHcCCCCCeEeC
Confidence 7668889999999999999999999999999999999998999884
No 6
>TIGR02075 pyrH_bact uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.
Probab=100.00 E-value=2.4e-38 Score=260.10 Aligned_cols=205 Identities=56% Similarity=0.981 Sum_probs=177.5
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccccc
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA 81 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~ 81 (219)
+++++|+++...++++|||||||++..++. ++.++++....+++++.++++|..++...|.++|+++..+++.+.....
T Consensus 28 ~~a~~i~~~~~~~~~vviV~G~Gs~~~~~~-a~~~~~~~~~~d~~g~~~~~l~~~l~~~~L~~~Gi~a~~l~~~~~~~~~ 106 (233)
T TIGR02075 28 RIANEIKELVKMGIEVGIVIGGGNIFRGVS-AKELGIDRVTADYMGMLATVINGLALRDALEKLGVKTRVLSAISMPQIC 106 (233)
T ss_pred HHHHHHHHHHhCCCeEEEEECCCHHHHHHH-HHhcCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCcEEeccccCCCCc
Confidence 578999999888899999999999876654 3334566556788999999999998889999999999887776543222
Q ss_pred chHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCceEEeeec-cCccccCCCCCCCCCcccccccHHHHh
Q 027731 82 EPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN-VDGVYDDNPRRNPNARLLDTLTYQEVT 160 (219)
Q Consensus 82 ~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~liiltD-V~Gv~~~dP~~~~~a~~i~~i~~~e~~ 160 (219)
..+..+.+.++|+.|.|||++++.|.++++||++|+++|..++||+|+++|| |||||++||+.+|+++++++++++|+.
T Consensus 107 ~~~~~~~i~~ll~~g~VpV~~g~~g~~~~s~D~~a~~lA~~l~a~~li~~td~VdGvy~~dp~~~~~a~~i~~i~~~e~~ 186 (233)
T TIGR02075 107 ESYIRRKAIKHLEKGKVVIFSGGTGNPFFTTDTAAALRAIEINADVILKGTNGVDGVYTADPKKNKDAKKYETITYNEAL 186 (233)
T ss_pred cccCHHHHHHHHHCCCEEEEECCCCCCCCCchHHHHHHHHHcCCCEEEEeecccCeEEcCCCCCCCCCeECcEecHHHHH
Confidence 2232345667899999999999878889999999999999999999999999 999999999999999999999999987
Q ss_pred hCCCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731 161 SKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 207 (219)
Q Consensus 161 ~~g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~ 207 (219)
+.+...+|+++++.|.++|++++|+|+.+|+.|.++++|+.+||+|.
T Consensus 187 ~~~~~~~d~~~~~~a~~~~i~v~i~~g~~~~~l~~~l~g~~~GT~i~ 233 (233)
T TIGR02075 187 KKNLKVMDLTAFALARDNNLPIVVFNIDEPGALKKVILGKGIGTLVS 233 (233)
T ss_pred hcCHHHHHHHHHHHHHHCCCeEEEEeCCCcchHHHHHCCCCCCEEeC
Confidence 77777889999999999999999999999999999999999999984
No 7
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-38 Score=266.04 Aligned_cols=205 Identities=26% Similarity=0.413 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcC--hHHHHHHHHHHHHHHHH---HHHHHhcCCCeeEecccc
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRS--SADYIGMLATVMNAIFL---QATMESIGIPTRVQTAFR 76 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~---~~~l~~~gi~a~~~~~~~ 76 (219)
.++++|++|++.|+++|||+ +|+++.|+..++ ++++ .....|++|+..+..|+ .+.|..+|+.+ +|.+++
T Consensus 32 ~l~~~ia~L~~~G~eVilVS-SGAiaaG~~~Lg---~~~rp~~l~~kQA~AAVGQ~~Lm~~y~~~f~~~g~~v-~QiLLT 106 (369)
T COG0263 32 ELVRQVAALHKAGHEVVLVS-SGAIAAGRTRLG---LPKRPKTLAEKQAAAAVGQVRLMQLYEELFARYGIKV-GQILLT 106 (369)
T ss_pred HHHHHHHHHHhCCCEEEEEc-cchhhhChhhcC---CCCCCcchHHHHHHHHhCHHHHHHHHHHHHHhcCCee-eEEEee
Confidence 58999999999999999998 799999988876 5544 45667888887777654 66799999986 488888
Q ss_pred cccccc--hHHHH--HHHHHHhCCCEEEEeCC-----CCCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCC
Q 027731 77 MSEVAE--PYIRR--RAVRHLEKGRVVIFAAG-----TGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPN 147 (219)
Q Consensus 77 ~~~~~~--~~~~~--~~~~~l~~g~ipIv~g~-----~g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~ 147 (219)
..|+.+ +|.|. .+..+|+.|.|||+|++ .+..|+|||++|+++|.+++||.|+++||+||+||+||+.+|+
T Consensus 107 r~D~~~r~ry~Nar~Tl~~Ll~~gvVPIINENDtva~~EikfGDND~LsA~VA~lv~ADlLvlLsDiDGLyd~nPr~~pd 186 (369)
T COG0263 107 RDDFSDRRRYLNARNTLSALLELGVVPIINENDTVATEEIKFGDNDTLSALVAILVGADLLVLLSDIDGLYDANPRTNPD 186 (369)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHCCceeeecCCCceeeeeeeecCCchHHHHHHHHhCCCEEEEEEccCcccCCCCCCCCC
Confidence 888764 46653 35579999999999997 4578999999999999999999999999999999999999999
Q ss_pred CcccccccHH--HHhh--------CCCCCc--hHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEecCCC
Q 027731 148 ARLLDTLTYQ--EVTS--------KDLSVM--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWN 211 (219)
Q Consensus 148 a~~i~~i~~~--e~~~--------~g~~~~--k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~~~ 211 (219)
|++|++++.. |+.. +|+++| |+.|++.|.++|++++|++|.+|+.+.+++.++..||+|.+...
T Consensus 187 Ak~i~~V~~it~ei~~~aggsgs~~GTGGM~TKl~AA~iA~~aG~~~iI~~g~~~~~i~~~~~~~~~GT~F~~~~~ 262 (369)
T COG0263 187 AKLIPEVEEITPEIEAMAGGSGSELGTGGMRTKLEAAKIATRAGVPVIIASGSKPDVILDALEGEAVGTLFEPQAK 262 (369)
T ss_pred CeeehhhcccCHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHcCCcEEEecCCCcchHHHHHhCCCCccEEecCCc
Confidence 9999987642 3432 355555 99999999999999999999999999999999999999997653
No 8
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=100.00 E-value=6.7e-38 Score=257.16 Aligned_cols=205 Identities=70% Similarity=1.100 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccccc
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA 81 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~ 81 (219)
+++++|+++...++++|||||||++.++... ..++....+.++++++++++|..++...|.++|+++..+++.+.....
T Consensus 27 ~~a~~i~~~~~~~~~~viVhGgG~~~~~~~~-~~~~~~~~~~d~~g~~~~~~n~~ll~~~L~~~Gv~a~~l~~~~~~~~~ 105 (231)
T cd04254 27 RIAREIKEVVDLGVEVAIVVGGGNIFRGASA-AEAGMDRATADYMGMLATVINALALQDALESLGVKTRVMSAIPMQGVA 105 (231)
T ss_pred HHHHHHHHHHHCCCcEEEEECCCcccccchh-hhcCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCeEEEcHHHhhhhh
Confidence 6788999988888999999999998544322 224455556788888999999988889999999999887766532211
Q ss_pred chHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhh
Q 027731 82 EPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTS 161 (219)
Q Consensus 82 ~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~ 161 (219)
..+..+.+.++|+.|.|||++++.|.+..++|++|+++|.+|+|++++++|||||||++||+.+|+++++++++++|+.+
T Consensus 106 ~~~~~~~l~~~l~~g~ipV~~g~~G~~~~~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dp~~~~~a~~i~~i~~~~~~~ 185 (231)
T cd04254 106 EPYIRRRAIRHLEKGRVVIFAGGTGNPFFTTDTAAALRAIEINADVILKATKVDGVYDADPKKNPNAKRYDHLTYDEVLS 185 (231)
T ss_pred cccCHHHHHHHHHCCCEEEEECCcCCCCCCcHHHHHHHHHHcCCCEEEEEeCCCEEEecCCCCCCCcEEeeEecHHHHHh
Confidence 11111345678999999999988778889999999999999999999999999999999999999999999999999877
Q ss_pred CCCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731 162 KDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 207 (219)
Q Consensus 162 ~g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~ 207 (219)
.|...+|+++++.|.++|++++|+|+.+|++|.++++|+..||+|+
T Consensus 186 ~~~~~~d~~a~~~a~~~gi~~~I~~g~~~~~l~~~l~g~~~GT~i~ 231 (231)
T cd04254 186 KGLKVMDATAFTLCRDNNLPIVVFNINEPGNLLKAVKGEGVGTLIS 231 (231)
T ss_pred cchhhhHHHHHHHHHHCCCeEEEEeCCCccHHHHHHCCCCCCEEeC
Confidence 7777899999999999999999999999999999999998999984
No 9
>PRK14557 pyrH uridylate kinase; Provisional
Probab=100.00 E-value=2.8e-37 Score=254.75 Aligned_cols=208 Identities=44% Similarity=0.772 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcChHHHHHHHHHHHHHHHHHHHHHhc-CCCeeEecccccccc
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESI-GIPTRVQTAFRMSEV 80 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-gi~a~~~~~~~~~~~ 80 (219)
+++++|+++.+.|++++||||||++++++ .++.+++++...|.++++++++|+.++..+|+.. +..+..++.......
T Consensus 31 ~~a~~i~~~~~~g~~vvVVvGgGn~~rg~-~a~~~~~~~~~~D~ig~~g~~lna~ll~~~l~~~~~~~~~i~t~~~~~~~ 109 (247)
T PRK14557 31 HIANEILSIVDLGIEVSIVIGGGNIFRGH-LAEEWGIDRVEADNIGTLGTIINSLMLRGVLTSKTNKEVRVMTSIPFNAV 109 (247)
T ss_pred HHHHHHHHHHHcCCeEEEEECCcHHHHHH-HHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhhCCceeEEeccccccc
Confidence 57899999999999999999999876543 2333457777789999999999999999899874 666543433322222
Q ss_pred cchHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCceEEee-eccCccccCCCCCCCCCcccccccHHHH
Q 027731 81 AEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKA-TNVDGVYDDNPRRNPNARLLDTLTYQEV 159 (219)
Q Consensus 81 ~~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~liil-tDV~Gv~~~dP~~~~~a~~i~~i~~~e~ 159 (219)
.+++...++.+.|++|.|||+.|+.|.++.++|++|+++|.+++||+|+++ |||||||++||+.+|+|++|+++++.|+
T Consensus 110 ~~~~~~~~~~~~l~~g~VvV~~G~~g~~~~stD~lAallA~~l~Ad~li~~ttdVdGvY~~DP~~~~~Ak~i~~i~~~e~ 189 (247)
T PRK14557 110 AEPYIRLRAVHHLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDV 189 (247)
T ss_pred cchhhHHHHHHHHhCCCEEEEECCcCCCccChHHHHHHHHHHhCCCEEEEecCCcCEeECCCCCCCCCCEEeeEEChhhh
Confidence 233333456677999999999999888999999999999999999999999 5999999999999999999999999887
Q ss_pred hhCCCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEecCC
Q 027731 160 TSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW 210 (219)
Q Consensus 160 ~~~g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~~ 210 (219)
...+...|+++|+++|.++|++++|+|+++|+.|.++++|+..||+|.+..
T Consensus 190 ~~~~~~~~~~~A~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~~~ 240 (247)
T PRK14557 190 VRQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDDA 240 (247)
T ss_pred cccCHHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHcCCCCcEEEecCc
Confidence 544555789999999999999999999999999999999999999998754
No 10
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=100.00 E-value=7e-35 Score=252.41 Aligned_cols=209 Identities=20% Similarity=0.292 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhcc-CCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccccc
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGN-SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV 80 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~ 80 (219)
+++++|++++++|+++||||||| ++.+...++. .+.+....+.+...+......++...|+++|+++. |...+..++
T Consensus 31 ~la~~I~~l~~~G~~vvlVsSGa-va~G~~~l~~~~~~~~~~~qalaavGq~~l~~~~~~~f~~~g~~~a-qvLlT~~d~ 108 (368)
T PRK13402 31 GLVQQIVYLKDQGHQVVLVSSGA-VAAGYHKLGFIDRPSVPEKQAMAAAGQGLLMATWSKLFLSHGFPAA-QLLLTHGDL 108 (368)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCh-hhcCccccCCCCCCCccHHHHHHHhhHHHHHHHHHHHHHHCCCeEE-EEEEecchh
Confidence 58899999999999999999654 6556554442 11111122222223333333456789999999986 444555565
Q ss_pred cc--hHH--HHHHHHHHhCCCEEEEeCC-----CCCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCccc
Q 027731 81 AE--PYI--RRRAVRHLEKGRVVIFAAG-----TGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLL 151 (219)
Q Consensus 81 ~~--~~~--~~~~~~~l~~g~ipIv~g~-----~g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i 151 (219)
.+ +|. +..+..+|+.|.|||++++ .+..|++||++|+++|.+++||.|+|+|||||||++||+.+|++++|
T Consensus 109 ~~~~~y~n~~~~l~~LL~~g~IPIinenD~v~~~el~~GdnD~lAa~vA~~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I 188 (368)
T PRK13402 109 RDRERYINIRNTINVLLERGILPIINENDAVTTDRLKVGDNDNLSAMVAALADADTLIILSDIDGLYDQNPRTNPDAKLI 188 (368)
T ss_pred hhHHHHHHHHHHHHHHHHCCcEEEEeCCCcEeecccccCChHHHHHHHHHHhCCCEEEEEecCCeEEeCCCCCCCCCEEE
Confidence 42 343 3445578999999999974 34678999999999999999999999999999999999999999999
Q ss_pred ccccH--HHHhh--------CCCCCc--hHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEecCCCC
Q 027731 152 DTLTY--QEVTS--------KDLSVM--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNS 212 (219)
Q Consensus 152 ~~i~~--~e~~~--------~g~~~~--k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~~~~ 212 (219)
+++++ .|+.. .|+++| |++|++.|.++|++++|+|+..|+.|.+++.|+..||+|.+....
T Consensus 189 ~~I~~i~~e~~~l~~~~~s~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~ 261 (368)
T PRK13402 189 KQVTEINAEIYAMAGGAGSNVGTGGMRTKIQAAKIAMSHGIETFIGNGFTADIFNQLLKGQNPGTYFTPEEKP 261 (368)
T ss_pred EEeccCcHHHHHHhcccccCcCcCCchHHHHHHHHHHHcCCcEEEEcCCCchHHHHHhcCCCCceEEecCCCC
Confidence 99986 45432 234444 889999999999999999999999999999999999999876544
No 11
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=100.00 E-value=1.2e-34 Score=242.17 Aligned_cols=204 Identities=23% Similarity=0.270 Sum_probs=157.0
Q ss_pred HHHHHHHHHHHCCCeEEEE-ECCchHHHhHHHhccCCCCcChHHHHHHHH---HHHHHHHHHHHHHhcCCCeeEeccccc
Q 027731 2 AIAREVASVTRLGIEVAIV-VGGGNIFRGASAAGNSGLDRSSADYIGMLA---TVMNAIFLQATMESIGIPTRVQTAFRM 77 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV-~GgG~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~gi~a~~~~~~~~ 77 (219)
+++++|++++++|+++||| ||++++++ ..++....+. .....++++ ......++..+|+++|+++. |...+.
T Consensus 35 ~~~~~I~~~~~~g~~vvlV~Sga~~~g~--~~l~~~~~~~-~~~~~~a~aa~Gq~~l~~~~~~~~~~~g~~~~-q~llT~ 110 (266)
T PRK12314 35 QLVFVISDLMNKGKEVILVSSGAIGAGL--TKLKLDKRPT-SLAEKQALAAVGQPELMSLYSKFFAEYGIVVA-QILLTR 110 (266)
T ss_pred HHHHHHHHHHHCCCeEEEEeeCcccccc--eeeccccCCC-CHHHHHHHHHHhHHHHHHHHHHHHHHcCCeEE-EEEEec
Confidence 6899999999999999987 55566644 4444222221 223344443 45555677889999999874 555665
Q ss_pred ccccch--HHH--HHHHHHHhCCCEEEEeCC-----CCC--CccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCC
Q 027731 78 SEVAEP--YIR--RRAVRHLEKGRVVIFAAG-----TGN--PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNP 146 (219)
Q Consensus 78 ~~~~~~--~~~--~~~~~~l~~g~ipIv~g~-----~g~--~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~ 146 (219)
.++.++ +.+ ..+.++|+.|+|||++++ .+. .+++||++|+++|.+++||+|+|+|||||||++||+.+|
T Consensus 111 ~~~~~~~~~~~~~~~l~~ll~~g~IPVv~~nd~v~~~~~~~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~ 190 (266)
T PRK12314 111 DDFDSPKSRANVKNTFESLLELGILPIVNENDAVATDEIDTKFGDNDRLSAIVAKLVKADLLIILSDIDGLYDKNPRINP 190 (266)
T ss_pred ccccchHHHHHHHHHHHHHHHCCCEEEEcCCCCeeeccccceecchHHHHHHHHHHhCCCEEEEEeCCCcccCCCCCCCC
Confidence 566533 222 334578899999999974 222 378999999999999999999999999999999999999
Q ss_pred CCcccccccH--HHHhhC----------CCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEecC
Q 027731 147 NARLLDTLTY--QEVTSK----------DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 209 (219)
Q Consensus 147 ~a~~i~~i~~--~e~~~~----------g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~ 209 (219)
++++|+++++ .+..+. |+|.+|+++++.|.++|++++|+|+++|+.|.++++|+..||+|.+.
T Consensus 191 ~a~~i~~I~~~~~~~~~~~~~~~~~~~tGGM~~Kl~aa~~a~~~gv~v~I~~g~~~~~i~~~l~g~~~GT~i~~~ 265 (266)
T PRK12314 191 DAKLRSEVTEITEEILALAGGAGSKFGTGGMVTKLKAAKFLMEAGIKMVLANGFNPSDILDFLEGESIGTLFAPK 265 (266)
T ss_pred CCeEEEEecCCCHHHHHHhccCCCCcccCchHHHHHHHHHHHHCCCeEEEEcCCCchHHHHHHcCCCCceEEccC
Confidence 9999999875 333221 35667999999999999999999999999999999999899999764
No 12
>PTZ00489 glutamate 5-kinase; Provisional
Probab=100.00 E-value=5.7e-34 Score=236.93 Aligned_cols=203 Identities=18% Similarity=0.244 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcChHHHHHHHHHHHHHHH---HHHHHHhcCCCeeEecccccc
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIF---LQATMESIGIPTRVQTAFRMS 78 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~l~~~gi~a~~~~~~~~~ 78 (219)
.++++++++++ ++++|||| ||++++++..++ +........+++++..+..| +...|.++|+.+. |.+.+..
T Consensus 33 ~l~~~i~~l~~-~~~vilVs-sGava~g~~~~~---~~~~~~~~~qa~aaiGq~~L~~~y~~~f~~~~~~~a-qiLlt~~ 106 (264)
T PTZ00489 33 ALCRFIADLQT-KYEVILVT-SGAVAAGYTKKE---MDKSYVPNKQALASMGQPLLMHMYYTELQKHGILCA-QMLLAAY 106 (264)
T ss_pred HHHHHHHHHhc-CCeEEEEe-cChHhcChhhcC---CCccccHHHHHHHHhCHHHHHHHHHHHHHhCCCeEE-Eeeeecc
Confidence 57899999987 79999999 566988877554 43333344555665444333 5678999999985 5555555
Q ss_pred cccc--hHHH--HHHHHHHhCCCEEEEeCCC-----CCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCc
Q 027731 79 EVAE--PYIR--RRAVRHLEKGRVVIFAAGT-----GNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNAR 149 (219)
Q Consensus 79 ~~~~--~~~~--~~~~~~l~~g~ipIv~g~~-----g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~ 149 (219)
++.. ++.+ ..+.++|+.|.|||+++++ +..|+|||.+|+.+|..++||+|+|+|||||||++||+.+|+++
T Consensus 107 d~~~~~~~~n~~~~l~~lL~~g~VPIinend~~~~~e~~~gdnD~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~~A~ 186 (264)
T PTZ00489 107 DLDSRKRTINAHNTIEVLISHKVIPIINENDATALHELVFGDNDRLSALVAHHFKADLLVILSDIDGYYTENPRTSTDAK 186 (264)
T ss_pred ccccchhhHHHHHHHHHHHHCCCEEEECCCCCcccceeEeCChHHHHHHHHHHhCCCEEEEeeccCeeEcCCCCCCCccc
Confidence 5542 3333 3355789999999999963 34567999999999999999999999999999999999999998
Q ss_pred c---cccccHHHHhh-------C--CCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCC--CCceEEecCC
Q 027731 150 L---LDTLTYQEVTS-------K--DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGE--RVGTLIGGTW 210 (219)
Q Consensus 150 ~---i~~i~~~e~~~-------~--g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~--~~GT~i~~~~ 210 (219)
+ +++++.+++.. . |+|..|+++|+.+.++|++++|+||++|+.|.+++.|+ ..||+|.+.-
T Consensus 187 ~~~~i~~i~~~~~~~~~~~~~~~~tGGM~~Kl~aa~~a~~~Gi~v~I~~g~~~~~i~~~l~g~~~~~GT~~~~~~ 261 (264)
T PTZ00489 187 IRSVVHELSPDDLVAEATPNNRFATGGIVTKLQAAQFLLERGGKMYLSSGFHLEKARDFLIGGSHEIGTLFYPRV 261 (264)
T ss_pred eeeeeccCCHHHHHHhcCcCCCcccCChHHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHcCCCCCCceEEeecC
Confidence 7 77888766521 2 44555999999999999999999999999999999775 3799997743
No 13
>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi
Probab=100.00 E-value=5.3e-34 Score=232.66 Aligned_cols=190 Identities=31% Similarity=0.504 Sum_probs=159.6
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHHHhHHHh-ccCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccccc
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAA-GNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV 80 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~ 80 (219)
+++++|+++.. ++++|||||||++++.+... +..+++....+++++.++++|..++..++. +|++++...
T Consensus 22 ~~~~~i~~~~~-~~~iiiV~GgG~~a~~~~~~~~~~~~~~~~~d~~g~~~~~ln~~~~~~~l~-~~~~~~~~~------- 92 (221)
T cd04253 22 EYANVLRKISD-GHKVAVVVGGGRLAREYISVARKLGASEAFLDEIGIMATRLNARLLIAALG-DAYPPVPTS------- 92 (221)
T ss_pred HHHHHHHHHhC-CCEEEEEECCCHHHHHHHHHHHHcCCCHHHHHHhcCHHHHHHHHHHHHHHh-cCCCcCCCC-------
Confidence 56788887765 78999999999998876533 223455556788999999999999877666 787765321
Q ss_pred cchHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHh
Q 027731 81 AEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVT 160 (219)
Q Consensus 81 ~~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~ 160 (219)
.+++.++|+.|.+||++|+. +..++|++|+++|..++|++|+++|||||||++||+.+|++++|++++++|+.
T Consensus 93 -----~~~~~~~l~~g~vpv~~G~~--~~~s~D~~a~~lA~~l~a~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~ 165 (221)
T cd04253 93 -----YEEALEAMFTGKIVVMGGTE--PGQSTDAVAALLAERLGADLLINATNVDGVYSKDPRKDPDAKKFDRLSADELI 165 (221)
T ss_pred -----HHHHHHHHHcCCeEEEECCC--CCCccHHHHHHHHHHcCCCEEEEEeCCCeeECCCCCCCCCCeEeeEeCHHHHH
Confidence 13456789999999999864 45799999999999999999999999999999999999999999999998877
Q ss_pred hC--------CC-CCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731 161 SK--------DL-SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 207 (219)
Q Consensus 161 ~~--------g~-~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~ 207 (219)
++ |+ +.+|+.+++++.++|++++|+|+++|+.|.++++|+..||+|.
T Consensus 166 ~~~~~~~~~~g~~~~~d~~a~~~~~~~gi~~~I~~g~~p~~l~~~l~g~~~GT~I~ 221 (221)
T cd04253 166 DIVGKSSWKAGSNEPFDPLAAKIIERSGIKTIVVDGRDPENLERALKGEFVGTIIE 221 (221)
T ss_pred HHccCCCcCCCCCcchHHHHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCeEeC
Confidence 64 23 4679999999999999999999999999999999998999984
No 14
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=100.00 E-value=1e-33 Score=231.05 Aligned_cols=191 Identities=32% Similarity=0.492 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHHHhHHHh-ccCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccccc
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAA-GNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV 80 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~ 80 (219)
+++++|++++++ +++|||||||++++.+... ...++.....+++++.++++|..++..+|...++++...+.
T Consensus 21 ~i~~~i~~~~~~-~~viiV~ggG~~a~~~~~~~~~~~~~~~~~~~~g~~~~~ln~~~l~~ll~~~~~~~~~~~~------ 93 (221)
T TIGR02076 21 EFANILRKLSDE-HKVGVVVGGGKTARRYIGVARELGASETFLDEIGIDATRLNAMLLIAALGDDAYPKVPENF------ 93 (221)
T ss_pred HHHHHHHHHHhC-CeEEEEECCcHHHHHHHHHHHHcCCCHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCcCCCH------
Confidence 578999998876 8999999999988765322 22345555678899999999999998888877887653211
Q ss_pred cchHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHh
Q 027731 81 AEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVT 160 (219)
Q Consensus 81 ~~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~ 160 (219)
....+.++.|.+||++|+. +..++|++|+++|.+++||+|+++|||||||++||+.+|++++|++++++|+.
T Consensus 94 ------~~~~~~l~~g~ipv~~G~~--~~~s~D~~A~~lA~~l~A~~li~ltdVdGvy~~dP~~~~~a~~i~~i~~~e~~ 165 (221)
T TIGR02076 94 ------EEALEAMSLGKIVVMGGTH--PGHTTDAVAALLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLTPEELV 165 (221)
T ss_pred ------HHHHHHHHcCCEEEEcCCC--CCCCcHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEeeEECHHHHH
Confidence 2345678889999999864 56899999999999999999999999999999999999999999999998876
Q ss_pred hC------CC---CCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731 161 SK------DL---SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 207 (219)
Q Consensus 161 ~~------g~---~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~ 207 (219)
++ |+ +.+|+.+++.+.+.+++++|+|+++|+.+.++++|+..||+|.
T Consensus 166 ~~~~~~~~~~g~~~~~~~~a~~~~~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~ 221 (221)
T TIGR02076 166 EIVGSSSVKAGSNEVVDPLAAKIIERSKIRTIVVNGRDPENLEKVLKGEHVGTIIE 221 (221)
T ss_pred HHhcCCCccCCCCceeHHHHHHHHHHCCCcEEEECCCCccHHHHHHCCCCCCeEeC
Confidence 53 22 3569999999999999999999999999999999998999984
No 15
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=100.00 E-value=6.9e-34 Score=235.34 Aligned_cols=204 Identities=28% Similarity=0.387 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHHHhH-HHhcc-----CCCCc--ChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEec
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGN-----SGLDR--SSADYIGMLATVMNAIFLQATMESIGIPTRVQT 73 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~-~~~~~-----~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~ 73 (219)
+++++|+++++.|+++|||||||++.+.. ...+. .+.+. ...+.+...++..+..++..+|+++|+++.+++
T Consensus 17 ~~~~~i~~l~~~~~~~viV~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~a~~~~ 96 (248)
T cd02115 17 NLARILVKLASEGGRVVVVHGAGPQITDELLAHGELLGYARGLRITDRETDALAAMGEGMSNLLIAAALEQHGIKAVPLD 96 (248)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCcCHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Confidence 57899999988899999999999876542 22211 12222 223344445667777778889999999998877
Q ss_pred cccccccc-------c--hHHHHHHHHHHhCCCEEEEeCCCC--------CCccChHHHHHHHHHhcCCceEEeeeccCc
Q 027731 74 AFRMSEVA-------E--PYIRRRAVRHLEKGRVVIFAAGTG--------NPFFTTDTAAALRCAEINAEVVLKATNVDG 136 (219)
Q Consensus 74 ~~~~~~~~-------~--~~~~~~~~~~l~~g~ipIv~g~~g--------~~~~~sD~~Aa~lA~~l~Ad~liiltDV~G 136 (219)
+.+..... . ....+.+.++|+.+.|||++|+.. .+++++|++|+.+|.+|+|++|+|+|||||
T Consensus 97 ~~~~~~~~~~~~~~g~~~~~~~~~l~~~l~~~~ipVv~g~~~~~~~~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~G 176 (248)
T cd02115 97 LTQAGFASPNQGHVGKITKVSTDRLKSLLENGILPILSGFGGTDEKETGTLGRGGSDSTAALLAAALKADRLVILTDVDG 176 (248)
T ss_pred hHHcCeEeCCCCCcccceeeCHHHHHHHHhCCcEEEecCeEeccCCceeeecCCCHHHHHHHHHHHcCCCEEEEEecCCe
Confidence 65432211 0 011244567899999999999632 367999999999999999999999999999
Q ss_pred cccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEE
Q 027731 137 VYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 206 (219)
Q Consensus 137 v~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i 206 (219)
||++||+.+|++++|++++++|+.++ |.|.+|++++..+.++|++++|+|+++|+.+ ++|++++.||+|
T Consensus 177 v~~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~~~k~~a~~~~~~~~~~v~I~~~~~~~~l-~~~~~~~~GT~I 248 (248)
T cd02115 177 VYTADPRKVPDAKLLSELTYEEAAELAYAGAMVLKPKAADPAARAGIPVRIANTENPGAL-ALFTPDGGGTLI 248 (248)
T ss_pred eecCCCCcCCcCeECCcCCHHHHHHHHHcCCCccCHHHHHHHHHcCCcEEEEeCCCcccc-cccCCCCCCCCC
Confidence 99999999999999999999887764 7888999999999999999999999999999 999999899986
No 16
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=100.00 E-value=1.7e-33 Score=236.80 Aligned_cols=203 Identities=21% Similarity=0.235 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCC----------------CcChHHHHHHHHHHHHHHH---HHHHH
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGL----------------DRSSADYIGMLATVMNAIF---LQATM 62 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~l---~~~~l 62 (219)
+++++|++|++.|+++|+|+ +|+.+.|+..++.++. ++......+++++..+..| |.+.|
T Consensus 35 ~l~~~i~~l~~~g~~vilVs-sGAv~~G~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~qa~aa~gq~~L~~~y~~~f 113 (284)
T cd04256 35 SIVEQVSELQSQGREVILVT-SGAVAFGKQRLRHEILLSSSMRQTLKSGQLKDMPQMELDGRACAAVGQSGLMALYEAMF 113 (284)
T ss_pred HHHHHHHHHHHCCCEEEEEe-eCcHHhChHHhhhccccccchhhhcccccccCCcchhHHHHHHHHcccHHHHHHHHHHH
Confidence 58999999999999999665 3444446565553221 0122333566666555544 56789
Q ss_pred HhcCCCeeEecccccccccchH--HH--HHHHHHHhCCCEEEEeCCCC--------------CCccChHHHHHHHHHhcC
Q 027731 63 ESIGIPTRVQTAFRMSEVAEPY--IR--RRAVRHLEKGRVVIFAAGTG--------------NPFFTTDTAAALRCAEIN 124 (219)
Q Consensus 63 ~~~gi~a~~~~~~~~~~~~~~~--~~--~~~~~~l~~g~ipIv~g~~g--------------~~~~~sD~~Aa~lA~~l~ 124 (219)
+++|+++. |..++..++.++. .+ ..+..+|+.|.|||+++++. +.++|||++|+++|..++
T Consensus 114 ~~~~~~~~-q~llt~~d~~~~~~~~~~~~~l~~lL~~g~iPVi~~nD~v~~~~~~~~~~~~~~~i~d~D~lAa~lA~~l~ 192 (284)
T cd04256 114 TQYGITVA-QVLVTKPDFYDEQTRRNLNGTLEELLRLNIIPIINTNDAVSPPPEPDEDLQGVISIKDNDSLAARLAVELK 192 (284)
T ss_pred HHcCCcHH-HeeeeccccccHHHHHHHHHHHHHHHHCCCEEEEeCCCcccccccccccccccccccChHHHHHHHHHHcC
Confidence 99999985 5566767776442 22 33457899999999997311 245899999999999999
Q ss_pred CceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC--------CCCC--chHHHHHHHHhCCCcEEEEecCCCchHH
Q 027731 125 AEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK--------DLSV--MDMTAITLCQENNIPVVVFNLNQPGNIA 194 (219)
Q Consensus 125 Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~--------g~~~--~k~~aa~~a~~~gi~v~I~~g~~~~~i~ 194 (219)
||+|+++|||||||++||+ .|++++|++++..+...+ ++++ .|++|+..+.++|++++|+||.+|+.+.
T Consensus 193 Ad~Li~lTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~~~~~~s~~gtGGM~~Kl~Aa~~a~~~Gi~v~I~~G~~~~~i~ 271 (284)
T cd04256 193 ADLLILLSDVDGLYDGPPG-SDDAKLIHTFYPGDQQSITFGTKSRVGTGGMEAKVKAALWALQGGTSVVITNGMAGDVIT 271 (284)
T ss_pred CCEEEEEeCCCeeecCCCC-CCCCeEcccccHhHHHHhhcccccCcccCCcHHHHHHHHHHHHCCCeEEEEcCCCccHHH
Confidence 9999999999999999996 689999999988665422 3444 4999999999999999999999999999
Q ss_pred HHhcCCCCceEEe
Q 027731 195 KAIQGERVGTLIG 207 (219)
Q Consensus 195 ~~l~g~~~GT~i~ 207 (219)
++++|+.+||+|.
T Consensus 272 ~~l~G~~~GT~~~ 284 (284)
T cd04256 272 KILEGKKVGTFFT 284 (284)
T ss_pred HHHcCCCCCEEeC
Confidence 9999999999983
No 17
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=100.00 E-value=4.2e-33 Score=231.39 Aligned_cols=200 Identities=26% Similarity=0.398 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHCCCeEEEEECC-chHHHhHHHhccCCCCcC--hHHHHHHHH---HHHHHHHHHHHHHhcCCCeeEeccc
Q 027731 2 AIAREVASVTRLGIEVAIVVGG-GNIFRGASAAGNSGLDRS--SADYIGMLA---TVMNAIFLQATMESIGIPTRVQTAF 75 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~Gg-G~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~l~~~~l~~~gi~a~~~~~~ 75 (219)
+++++|++++++|+++|||||| |+++ +..++ +... .....+.++ ......++..+|+++|+++. +...
T Consensus 25 ~~~~~i~~~~~~~~~viiV~sg~~~~g--~~~~~---~~~~~~~~~~~~~~~~~Gq~~l~~~~~~~l~~~Gi~~~-q~l~ 98 (251)
T cd04242 25 SLVEQIAELRNQGKEVILVSSGAVAAG--RQRLG---LEKRPKTLPEKQALAAVGQSLLMALYEQLFAQYGIKVA-QILL 98 (251)
T ss_pred HHHHHHHHHHHCCCeEEEEecCchhhC--hhhhc---cCcCCCchhHHHHHHHHhHHHHHHHHHHHHHHcCCeEE-EEEE
Confidence 5789999999999999999964 4553 33333 2221 222233333 34455567889999999985 3334
Q ss_pred ccccccch--HHH--HHHHHHHhCCCEEEEeCCC-----CCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCC
Q 027731 76 RMSEVAEP--YIR--RRAVRHLEKGRVVIFAAGT-----GNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNP 146 (219)
Q Consensus 76 ~~~~~~~~--~~~--~~~~~~l~~g~ipIv~g~~-----g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~ 146 (219)
+..++... +.+ ..+..+|+.|+|||+++++ +..++++|++|+++|.+|+||+|+|+|||||||++||+.+|
T Consensus 99 t~~~~~~~~~~~~~~~~i~~ll~~g~iPVv~~~d~v~~~~~~~~~~D~~A~~lA~~l~Ad~liilTDVdGvy~~dP~~~~ 178 (251)
T cd04242 99 TRDDFEDRKRYLNARNTLETLLELGVIPIINENDTVATEEIRFGDNDRLSALVAGLVNADLLILLSDVDGLYDKNPRENP 178 (251)
T ss_pred ehhHhcchHHHHHHHHHHHHHHHCCCEEEEcCCCCeeeeccccCChHHHHHHHHHHcCCCEEEEecCcCEEEeCCCCCCC
Confidence 43444322 222 2345688999999999742 24678999999999999999999999999999999999999
Q ss_pred CCccccccc--HHHHhhC--------CCCC--chHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731 147 NARLLDTLT--YQEVTSK--------DLSV--MDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 207 (219)
Q Consensus 147 ~a~~i~~i~--~~e~~~~--------g~~~--~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~ 207 (219)
++++|++++ ++|+.++ ++++ .|++++..+.++|++++|+|+++|+.+.++++|+..||+|.
T Consensus 179 ~a~~i~~i~~~~~e~~~~~~~~~~~~~tggm~~Kl~a~~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~ 251 (251)
T cd04242 179 DAKLIPEVEEITDEIEAMAGGSGSSVGTGGMRTKLKAARIATEAGIPVVIANGRKPDVLLDILAGEAVGTLFL 251 (251)
T ss_pred CCeEEEEecCChHHHHHHhcccCcCcccCCcHHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHcCCCCCeEeC
Confidence 999999999 7776542 3444 48899999999999999999999999999999999999984
No 18
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=100.00 E-value=3.8e-33 Score=243.03 Aligned_cols=206 Identities=25% Similarity=0.373 Sum_probs=159.6
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcC--hHHHHHHHHHH---HHHHHHHHHHHhcCCCeeEecccc
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRS--SADYIGMLATV---MNAIFLQATMESIGIPTRVQTAFR 76 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~l~~~~l~~~gi~a~~~~~~~ 76 (219)
+++++|++++++|+++|||| ||+++++...++ +... .....++++.. ....++..+|+++|+++.. ...+
T Consensus 34 ~la~~I~~l~~~g~~vViV~-sGai~~g~~~l~---l~~~~~~~~~~qa~aavGq~~L~~~~~~~l~~~gi~~~q-il~t 108 (372)
T PRK05429 34 ELARQIAALRAAGHEVVLVS-SGAVAAGRERLG---LPERPKTLAEKQAAAAVGQSRLMQAYEELFARYGITVAQ-ILLT 108 (372)
T ss_pred HHHHHHHHHHHCCCeEEEEc-ccHhhhhHhhcC---CCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHCCCCEEE-EEee
Confidence 58999999999999999999 567887776655 3322 22333444433 3334567899999999864 3344
Q ss_pred cccccc--hHHH--HHHHHHHhCCCEEEEeCCC-----CCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCC
Q 027731 77 MSEVAE--PYIR--RRAVRHLEKGRVVIFAAGT-----GNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPN 147 (219)
Q Consensus 77 ~~~~~~--~~~~--~~~~~~l~~g~ipIv~g~~-----g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~ 147 (219)
..++.. .|.+ ..+..+|+.|.|||+++++ +..++|||++|+++|.+++||+|+|+|||||||++||+.+|+
T Consensus 109 ~~d~~~~~~~ln~~~~i~~Ll~~g~IPVi~~nd~v~~~~l~~gd~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dP~~~p~ 188 (372)
T PRK05429 109 RDDLEDRERYLNARNTLRTLLELGVVPIINENDTVATDEIKFGDNDTLSALVANLVEADLLILLTDVDGLYTADPRKNPD 188 (372)
T ss_pred hhHhhhhhHhhhHHHHHHHHHHCCCEEEEcCCCccceecccccChHHHHHHHHHHcCCCEEEEecCCCeeEcCCCCCCCC
Confidence 444432 2444 2244688999999999742 346799999999999999999999999999999999999999
Q ss_pred CcccccccH--HHHhhC--------CC--CCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEecCCCC
Q 027731 148 ARLLDTLTY--QEVTSK--------DL--SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNS 212 (219)
Q Consensus 148 a~~i~~i~~--~e~~~~--------g~--~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~~~~ 212 (219)
+++|+++++ +|+.++ ++ |..|++|+..+.++|++++|+|+++|+.+.++++|+..||+|.+....
T Consensus 189 a~~I~~i~~~~~e~~~~~~~~~~~~gtGGM~~Kl~aa~~a~~~Gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~ 265 (372)
T PRK05429 189 AKLIPEVEEITDELEAMAGGAGSGLGTGGMATKLEAARIATRAGIPVVIASGREPDVLLRLLAGEAVGTLFLPQEKP 265 (372)
T ss_pred ceEEEEeccCCHHHHHHhcCCCCCcCcCCcHHHHHHHHHHHHCCCeEEEEcCCCccHHHHHhcCCCCCEEEeeCCcc
Confidence 999999987 444432 33 445889999999999999999999999999999999999999976544
No 19
>TIGR01027 proB glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.
Probab=100.00 E-value=8.2e-33 Score=240.07 Aligned_cols=206 Identities=27% Similarity=0.389 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcCh--HHHHHHHHHHHHH---HHHHHHHHhcCCCeeEecccc
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSS--ADYIGMLATVMNA---IFLQATMESIGIPTRVQTAFR 76 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~l~~~~l~~~gi~a~~~~~~~ 76 (219)
+++++|++++++|+++||||||| .+.++..++ +..++ ....+.++...+. .++...|.++|+++. +...+
T Consensus 26 ~la~~I~~l~~~g~~vvlV~sG~-~~~g~~~lg---~~~~~~~l~~~qa~aa~Gq~~l~~~~~~~l~~~Gi~~a-qillt 100 (363)
T TIGR01027 26 ELVEQVAALHAAGHEVVIVSSGA-IAAGFEALG---LPERPKTLAEKQALAAVGQVRLMQLYEQLFSQYGIKVA-QILLT 100 (363)
T ss_pred HHHHHHHHHHHCCCeEEEEeCcH-HhcCccccC---CCCCccchHHHHHHHHhChHHHHHHHHHHHHHcCCeEE-EEEEe
Confidence 58899999999999999999754 555555444 43322 2334454443333 345678999999975 44455
Q ss_pred cccccc--hHHHH-H-HHHHHhCCCEEEEeCC-----CCCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCC
Q 027731 77 MSEVAE--PYIRR-R-AVRHLEKGRVVIFAAG-----TGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPN 147 (219)
Q Consensus 77 ~~~~~~--~~~~~-~-~~~~l~~g~ipIv~g~-----~g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~ 147 (219)
..++.+ +|.+. . +..+|+.|.|||++++ .+..+++||++|+++|.+++||+|+|+|||||||++||+.+|+
T Consensus 101 ~~d~~~~~~~lna~~~i~~Ll~~g~iPVi~end~v~~~~l~~gd~D~lAa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~ 180 (363)
T TIGR01027 101 RADFSDRERYLNARNTLEALLELGVVPIINENDTVATEEIKFGDNDTLSALVAILVGADLLVLLTDVDGLYDADPRTNPD 180 (363)
T ss_pred ccchhhHHHHHHHHHHHHHHHhCCCEEEEeCCCceeeeecCcCChHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCC
Confidence 545543 34442 2 4468899999999964 2356789999999999999999999999999999999999999
Q ss_pred CcccccccHH--HHhh--------CCC--CCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEecCCCC
Q 027731 148 ARLLDTLTYQ--EVTS--------KDL--SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNS 212 (219)
Q Consensus 148 a~~i~~i~~~--e~~~--------~g~--~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~~~~ 212 (219)
+++|+++++. ++.. .|+ |.+|++|+..|.+.|++++|+|+.+|+.+.++++|+..||+|.+....
T Consensus 181 A~~I~~i~~~~~~~~~i~~~~~~~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~ 257 (363)
T TIGR01027 181 AKLIPVVEEITDLLLGVAGDSGSSVGTGGMRTKLQAADLATRAGVPVIIASGSKPEKIADALEGAPVGTLFHAQARR 257 (363)
T ss_pred CeEEEEeccCcHHHHHhhcCCCcCcCcCCchHHHHHHHHHHHCCCeEEEEeCCCccHHHHHhcCCCCcEEEeeCCCC
Confidence 9999999863 2221 233 455889999999999999999999999999999999899999886543
No 20
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=100.00 E-value=3.4e-32 Score=224.44 Aligned_cols=196 Identities=25% Similarity=0.329 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHCCCeEEEEECC-chHHHhHHHhc-cCC--CCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccc
Q 027731 2 AIAREVASVTRLGIEVAIVVGG-GNIFRGASAAG-NSG--LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM 77 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~Gg-G~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~ 77 (219)
+++++|+++++.|+++|||||| |.....+.... ... .+....+.+...+++++..++...|+++|+++.++++.+.
T Consensus 19 ~~~~~i~~l~~~g~~~vvV~sg~g~~~~~l~~~~~~~~~~~~~~~~~~i~a~Ge~~~~~l~~~~l~~~g~~a~~l~~~~~ 98 (239)
T cd04261 19 RVAERIKKRKKKGNQVVVVVSAMGGTTDELIELAKEISPRPPARELDVLLSTGEQVSIALLAMALNRLGIKAISLTGWQA 98 (239)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEechhhC
Confidence 5899999999999999999987 44443332211 111 1112223333344688888888999999999998777654
Q ss_pred cccc-------c-hHHH-HHHHHHHhCCCEEEEeCCCC---C------CccChHHHHHHHHHhcCCceEEeeeccCcccc
Q 027731 78 SEVA-------E-PYIR-RRAVRHLEKGRVVIFAAGTG---N------PFFTTDTAAALRCAEINAEVVLKATNVDGVYD 139 (219)
Q Consensus 78 ~~~~-------~-~~~~-~~~~~~l~~g~ipIv~g~~g---~------~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~ 139 (219)
..+. + .+.+ ..+.++++.+.|||++|+.+ . .+++||++|+.+|.+|+|++|++||||||||+
T Consensus 99 ~l~~~~~~~~~~i~~~~~~~l~~ll~~~~ipVi~G~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~lii~tdV~GVy~ 178 (239)
T cd04261 99 GILTDGHHGKARIIDIDPDRIRELLEEGDVVIVAGFQGINEDGDITTLGRGGSDTSAVALAAALGADRCEIYTDVDGVYT 178 (239)
T ss_pred CEEecCCCCcceechhhHHHHHHHHHcCCeEEEcCccccCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCC
Confidence 2211 1 1222 34557899999999988621 1 34599999999999999999999999999999
Q ss_pred CCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731 140 DNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 207 (219)
Q Consensus 140 ~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~ 207 (219)
+||+.+|+++++++++++|+.++ |.+++|+.|++++.++|+|++|.|+++|+ .||+|+
T Consensus 179 ~dP~~~~~a~~i~~i~~~ea~~l~~~G~~~~~~~a~~~~~~~~i~i~I~n~~~~~----------~gt~i~ 239 (239)
T cd04261 179 ADPRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRVLSSFSEE----------PGTLIT 239 (239)
T ss_pred CCCCCCCCceEccccCHHHHHHHHhccccccCHHHHHHHHHcCCeEEEecCCCCC----------CCcEeC
Confidence 99999999999999999988774 78899999999999999999999999884 599884
No 21
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=100.00 E-value=4.4e-32 Score=223.82 Aligned_cols=196 Identities=26% Similarity=0.365 Sum_probs=151.5
Q ss_pred HHHHHHHHHHHCCCeEEEEECC-chHH-HhHHHhccCC--CCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccc
Q 027731 2 AIAREVASVTRLGIEVAIVVGG-GNIF-RGASAAGNSG--LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM 77 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~Gg-G~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~ 77 (219)
+++++|+++++.|+++|||||| |... +.....+... .+....+.+.+.++.+|+.++.+.|+++|+++.++++.+.
T Consensus 19 ~~~~~i~~l~~~g~~~viV~sg~g~~~~~ll~~~~~~~~~~~~~~~~~i~~~Ge~~~~~~~~~~l~~~g~~a~~l~~~~~ 98 (239)
T cd04246 19 RVAERIKKAVKKGYQVVVVVSAMGGTTDELIGLAKEVSPRPSPRELDMLLSTGEQISAALLAMALNRLGIKAISLTGWQA 98 (239)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHhccCCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEeccccC
Confidence 5899999999999999999985 5543 3333332111 1222334444445678888888999999999988776653
Q ss_pred cccc-ch-------HHH-HHHHHHHhCCCEEEEeCCCC---C------CccChHHHHHHHHHhcCCceEEeeeccCcccc
Q 027731 78 SEVA-EP-------YIR-RRAVRHLEKGRVVIFAAGTG---N------PFFTTDTAAALRCAEINAEVVLKATNVDGVYD 139 (219)
Q Consensus 78 ~~~~-~~-------~~~-~~~~~~l~~g~ipIv~g~~g---~------~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~ 139 (219)
..+. ++ ..+ ..+.+++++|.|||++|+.+ . .+++||++|+.+|.+|+|++|++||||||||+
T Consensus 99 ~l~~~~~~~~~~~~~~~~~~l~~ll~~g~ipVi~g~~~~~~~g~~~~l~~g~~D~~A~~lA~~l~A~~li~~tdV~GVy~ 178 (239)
T cd04246 99 GILTDDHHGNARIIDIDPKRILEALEEGDVVVVAGFQGVNEDGEITTLGRGGSDTTAVALAAALKADRCEIYTDVDGVYT 178 (239)
T ss_pred CEEecCCCCceeechhhHHHHHHHHhcCCEEEEcCccccCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 2111 11 122 34557899999999988621 1 34589999999999999999999999999999
Q ss_pred CCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731 140 DNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 207 (219)
Q Consensus 140 ~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~ 207 (219)
+||+.+|+++++++++++|+.++ |.+++|++|++++.++|+|++|+|+++|+ .||+|+
T Consensus 179 ~dP~~~~~a~~i~~l~~~e~~~l~~~G~~~~~~~a~~~a~~~gi~i~i~~~~~~~----------~gt~i~ 239 (239)
T cd04246 179 ADPRIVPKARKLDVISYDEMLEMASLGAKVLHPRSVELAKKYNVPLRVRSSFSEN----------PGTLIT 239 (239)
T ss_pred CCCCCCCCCeEcccCCHHHHHHHHhCCCcccCHHHHHHHHHCCCeEEEecCCCCC----------CCcEeC
Confidence 99999999999999999988764 77899999999999999999999999874 599884
No 22
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=100.00 E-value=9.3e-33 Score=229.52 Aligned_cols=197 Identities=22% Similarity=0.314 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCC-------cChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLD-------RSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 74 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~ 74 (219)
++++++++++ |+++|||||||++.+.. +..++++ +......++...++|..+. ++|.++|+++.++++
T Consensus 27 ~l~~~l~~l~--g~~vvlVhGgg~~~~~~--~~~~g~~~g~~~~~~~~l~~~~~~~~~ln~~~~-~~l~~~g~~a~~l~~ 101 (252)
T cd04241 27 RIARELAEAI--DEKLVLVHGGGSFGHPK--AKEYGLPDGDGSFSAEGVAETHEAMLELNSIVV-DALLEAGVPAVSVPP 101 (252)
T ss_pred HHHHHHHhcc--CCCEEEEECCCcccCHH--HHHhCCCcCCCchhhhhHHHHHHHHHHHHHHHH-HHHHHCCCCeEEECh
Confidence 3566666665 89999999999986542 2223343 1223344444567777654 688889999998776
Q ss_pred ccccccc--ch-HHH-HHHHHHHhCCCEEEEeCC---CC---CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCC
Q 027731 75 FRMSEVA--EP-YIR-RRAVRHLEKGRVVIFAAG---TG---NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRR 144 (219)
Q Consensus 75 ~~~~~~~--~~-~~~-~~~~~~l~~g~ipIv~g~---~g---~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~ 144 (219)
.+..... +. .++ +.+.++|+.|.|||++|+ .+ ..++++|++|+.+|.+|+||+|+|+|||||||++||
T Consensus 102 ~~~~~~~~g~~~~~~~~~l~~ll~~g~iPVi~~~~~~~~~~~~~~~~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~P-- 179 (252)
T cd04241 102 SSFFVTENGRIVSFDLEVIKELLDRGFVPVLHGDVVLDEGGGITILSGDDIVVELAKALKPERVIFLTDVDGVYDKPP-- 179 (252)
T ss_pred HHeEEecCCeeeeecHHHHHHHHhCCCEEEEcCCeEecCCCCeEEeChHHHHHHHHHHcCCCEEEEEeCCCeeECCCC--
Confidence 5532111 11 122 335578999999999874 11 356899999999999999999999999999999999
Q ss_pred CCCCcccccccHHHHhhC------------CCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEE
Q 027731 145 NPNARLLDTLTYQEVTSK------------DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 206 (219)
Q Consensus 145 ~~~a~~i~~i~~~e~~~~------------g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i 206 (219)
|++++|++++++++.++ |+|..|++++..+.++|++++|+|+.+|+.+.++++|+..||+|
T Consensus 180 -~~~~~i~~i~~~~~~~~~~~~~~~~~~~tGGm~~Kl~aa~~a~~~Gv~v~I~~g~~~~~l~~~l~g~~~GT~i 252 (252)
T cd04241 180 -PDAKLIPEIDVGSLEDILAALGSAGTDVTGGMAGKIEELLELARRGIEVYIFNGDKPENLYRALLGNFIGTRI 252 (252)
T ss_pred -CCCeEcceeCccchHHHHHhcCcCCccccCCHHHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHcCCCCceEC
Confidence 78999999998554321 34455999999999999999999999999999999999899985
No 23
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=100.00 E-value=7.5e-32 Score=224.29 Aligned_cols=194 Identities=24% Similarity=0.368 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhc-cCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccccc
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAG-NSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV 80 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~ 80 (219)
++|++|+++++ +++++||||||+++|.+.... ..|++....+.+++.+..+|..++..+|..+|++++.. .++
T Consensus 52 ~la~~i~~~~~-~~~vilV~GGG~~~r~~~~~~~~~g~~~~~~~~~~~aa~~ln~lv~~~~l~~~g~~~i~~-----~~~ 125 (262)
T cd04255 52 PLVEEIVALRP-EHKLLILTGGGTRARHVYSIGLDLGMPTGVLAKLGASVSEQNAEMLATLLAKHGGSKVGH-----GDL 125 (262)
T ss_pred HHHHHHHHHhC-CCcEEEEECCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc-----ccH
Confidence 68899999877 689999999999987533211 24676666778888889999888878888899986411 011
Q ss_pred cchHHHHHHHHHHhCCCEEEEeCCCC------------CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCC
Q 027731 81 AEPYIRRRAVRHLEKGRVVIFAAGTG------------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNA 148 (219)
Q Consensus 81 ~~~~~~~~~~~~l~~g~ipIv~g~~g------------~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a 148 (219)
..+.++|+.|+|||++|+.+ .+++|+|++|+++|.+++|++|+++|||||||++||+.+|++
T Consensus 126 ------~~l~~lL~~g~vPVi~g~~~~~~~~i~~~~g~~~~~~~D~~Aa~lA~~l~ad~li~~TdVdGVy~~dP~~~~~a 199 (262)
T cd04255 126 ------LQLPTFLKAGRAPVISGMPPYGLWEHPAEEGRIPPHRTDVGAFLLAEVIGARNLIFVKDEDGLYTADPKKNKKA 199 (262)
T ss_pred ------HHHHHHHHCCCeEEEeCCcCCCeeeecCCCccCCCCCcHHHHHHHHHHhCCCEEEEEeccCeeECCCCCCCCCC
Confidence 24667899999999999732 467899999999999999999999999999999999999999
Q ss_pred cccccccHHHHhhC--CCCCchHHHHHHH--HhCCCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731 149 RLLDTLTYQEVTSK--DLSVMDMTAITLC--QENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 207 (219)
Q Consensus 149 ~~i~~i~~~e~~~~--g~~~~k~~aa~~a--~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~ 207 (219)
++|+++++.++.++ +...|+-.+...+ .+..++++|+|+++|+.+.+++.|+..||+|+
T Consensus 200 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~l~aa~~~~~v~I~~g~~~~~L~~~l~g~~~GT~i~ 262 (262)
T cd04255 200 EFIPEISAAELLKKDLDDLVLERPVLDLLQNARHVKEVQIVNGLVPGNLTRALRGEHVGTIIR 262 (262)
T ss_pred eEccEeCHHHHHHHhcCCCCCcHHHHHHHHHhCCCCcEEEEeCCCCCHHHHHHcCCCCceEeC
Confidence 99999999887654 2223433333222 23336899999999999999999999999984
No 24
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=100.00 E-value=1.5e-31 Score=218.97 Aligned_cols=186 Identities=26% Similarity=0.323 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHCCCeEEEEECCch-HHHhHHHhccCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccccc
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGN-IFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV 80 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~ 80 (219)
+++++|+++ +.|+++|+||||+. +.+.+..+. .+..+++.++..+++.+|+++|+++..+++.+....
T Consensus 19 ~~~~~i~~l-~~g~~vvvV~Sg~~~~t~~l~~~~----------~~~s~Ge~~~~~l~~~~l~~~Gi~a~~l~~~~~~~~ 87 (227)
T cd04234 19 RVADIIKAY-EKGNRVVVVVSAMGGVTDLLIELA----------LLLSFGERLSARLLAAALRDRGIKARSLDARQAGIT 87 (227)
T ss_pred HHHHHHHHh-hcCCCEEEEEcCCCcccHHHHHHH----------HHHHHHHHHHHHHHHHHHHHCCCCeEEeCHHHCCEE
Confidence 578899998 88999999997653 433322211 334466788999999999999999998777654322
Q ss_pred cc-------hH-H-HHHHHHHHhC-CCEEEEeCCCC---C------CccChHHHHHHHHHhcCCceEEeeeccCccccCC
Q 027731 81 AE-------PY-I-RRRAVRHLEK-GRVVIFAAGTG---N------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDN 141 (219)
Q Consensus 81 ~~-------~~-~-~~~~~~~l~~-g~ipIv~g~~g---~------~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~d 141 (219)
.. .+ . .+.+.++++. +.|||++|+.+ . .+++||++|+.+|.+|+||+|++||||||||++|
T Consensus 88 ~~~~~~~~~~~~~~~~~l~~~l~~~~~vpVv~g~i~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tdV~Gvy~~d 167 (227)
T cd04234 88 TDDNHGAARIIEISYERLKELLAEIGKVPVVTGFIGRNEDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTAD 167 (227)
T ss_pred cCCccchhhHHHHHHHHHHHHHhhCCCEEEecCceecCCCCCEEEeeCCCcHHHHHHHHHHhCCCEEEEEECCCccCCCC
Confidence 11 11 1 2345578899 99999998621 1 2458999999999999999999999999999999
Q ss_pred CCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731 142 PRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 207 (219)
Q Consensus 142 P~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~ 207 (219)
|+.+|+++++++++++|+.++ |.+++|++|+++|.++++|++|+|+++|+ ..||+|.
T Consensus 168 P~~~~~a~~i~~i~~~e~~~l~~~G~~~~~~~a~~~a~~~~i~i~i~~~~~~~---------~~gT~I~ 227 (227)
T cd04234 168 PRIVPEARLIPEISYDEALELAYFGAKVLHPRAVEPARKANIPIRVKNTFNPE---------APGTLIT 227 (227)
T ss_pred CCCCCCceEcCcCCHHHHHHHHhCCccccCHHHHHHHHHcCCeEEEEeCCCCC---------CCCCEeC
Confidence 999999999999999988764 78899999999999999999999999886 4599884
No 25
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=99.98 E-value=4.4e-31 Score=232.93 Aligned_cols=198 Identities=21% Similarity=0.276 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHCCCeEEEEECCch-HHHhHHHhccCCC----CcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccc
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGN-IFRGASAAGNSGL----DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFR 76 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~ 76 (219)
+++++|+++++.|+++|+|||||. +.+.+..+...++ +....+.+.+.++++++.++..+|+++|+++.++++.+
T Consensus 20 ~~~~~i~~~~~~g~~~vvV~sg~~~~t~~l~~~~~~~~~~~~~~~~~~~i~~~Ge~~s~~~~~~~l~~~g~~a~~l~~~~ 99 (401)
T TIGR00656 20 NAARIVLKEKKEGHKVVVVVSAMSGVTDALVEISEKAIRDAITPRERDELVSHGERLSSALFSGALRDLGVKAIWLDGGE 99 (401)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCCCChHHHHHHHHHHhccCCChHHHHHHhhHHHHHHHHHHHHHHHhCCCceEEecccc
Confidence 578999999999999999998864 5554444332223 22234566667888888889999999999999887655
Q ss_pred cccc-----cch-----HHHHHHHHHHhCCCEEEEeCCC-----CC----CccChHHHHHHHHHhcCCceEEeeeccCcc
Q 027731 77 MSEV-----AEP-----YIRRRAVRHLEKGRVVIFAAGT-----GN----PFFTTDTAAALRCAEINAEVVLKATNVDGV 137 (219)
Q Consensus 77 ~~~~-----~~~-----~~~~~~~~~l~~g~ipIv~g~~-----g~----~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv 137 (219)
.... .+. ...+.+.++++.|.|||++|+. |. .+++||++|+.+|.+|+|++|++|||||||
T Consensus 100 ~~~~t~~~~~~~~~~~~~~~~~l~~~l~~~~vpVi~g~~~~~~~g~~~~lgrg~sD~~A~~lA~~l~A~~l~i~tdV~Gv 179 (401)
T TIGR00656 100 AGIITDDNFGNAKIDIIATEERLLPLLEEGIIVVVAGFQGATEKGYTTTLGRGGSDYTAALLAAALKADRVDIYTDVPGV 179 (401)
T ss_pred ceEEeCCCCCceEeeecchHHHHHHHHhCCCEEEecCcceeCCCCCEeecCCCcHHHHHHHHHHHcCCCEEEEEECCCCC
Confidence 3211 110 1114456789999999999862 21 346899999999999999999999999999
Q ss_pred ccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEecC
Q 027731 138 YDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 209 (219)
Q Consensus 138 ~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~ 209 (219)
|++||+.+|+++++++++++|+.++ |..++|++|+.+|.++++|++|.|+++|+ .||+|.++
T Consensus 180 ~~~DP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~a~~~~i~i~i~~~~~~~----------~gT~I~~~ 244 (401)
T TIGR00656 180 YTTDPRVVEAAKRIDKISYEEALELATFGAKVLHPRTVEPAMRSGVPIEVRSSFDPE----------EGTLITNS 244 (401)
T ss_pred CcCCCCCCCCcEECCccCHHHHHHHHHcCCcccCHHHHHHHHHCCCeEEEEECCCCC----------CCeEEEeC
Confidence 9999999999999999999998874 88899999999999999999999999885 49999764
No 26
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=99.98 E-value=3.6e-31 Score=234.12 Aligned_cols=202 Identities=27% Similarity=0.309 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHCCCeEEEEECCc--hHHHhHHHhc-------------------c--CCC--------------------
Q 027731 2 AIAREVASVTRLGIEVAIVVGGG--NIFRGASAAG-------------------N--SGL-------------------- 38 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG--~~~~~~~~~~-------------------~--~~~-------------------- 38 (219)
++++-|++..+.|+++|+|++++ .+......++ . ...
T Consensus 21 ~va~iv~~~~~~g~~vVVVvSA~~~vTd~Lv~~a~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~ 100 (447)
T COG0527 21 RVADIVKEDSEEGVKVVVVVSAMGGVTDLLVALAEGAESGRDAVAEQRHRDIASELILDPFIAARLAEVIAEFKKVLLGI 100 (447)
T ss_pred HHHHHHHhhhhcCCcEEEEECCCCCchHHHHHHHhhcccccchhHHHHHHHHHHHHhhcchhhhhHhhhHhhhhHHhhhh
Confidence 56778888888899999999885 3433322221 0 011
Q ss_pred ------CcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccccccch--------HH-HHH-HHHHHhCCCEEEEe
Q 027731 39 ------DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP--------YI-RRR-AVRHLEKGRVVIFA 102 (219)
Q Consensus 39 ------~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~~~--------~~-~~~-~~~~l~~g~ipIv~ 102 (219)
+++..|.+-..++++++.+++.+|++.|+++.++++++.+..... .. .++ +..+++.+.+||++
T Consensus 101 ~~~~~~~~~~~D~ilS~GE~~Sa~lla~~L~~~Gv~A~~~~~~~~~i~t~~~~~~a~i~~~~~~~~l~~~~~~~~v~Vv~ 180 (447)
T COG0527 101 ALLGEVSPRERDELLSLGERLSAALLAAALNALGVDARSLDGRQAGIATDSNHGNARILDEDSERRLLRLLEEGKVPVVA 180 (447)
T ss_pred hhccCCCHHHHHHHHhhchHHHHHHHHHHHHhCCCceEEEchHHceeeecCcccccccchhhhhhhHHHHhcCCcEEEec
Confidence 223345555677899999999999999999999988865433211 11 133 55678899999999
Q ss_pred CCCC---------CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHH
Q 027731 103 AGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMT 170 (219)
Q Consensus 103 g~~g---------~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~ 170 (219)
||.| ..+++||++|+.||++|+||++.|||||||||++|||.+|+|++|++|||+|+.++ |.+++|++
T Consensus 181 GF~G~~~~G~~tTLGRGGSD~SA~~laa~l~Ad~~~I~TDVdGI~TaDPRiVp~Ar~i~~isyeEa~ELA~~GAkVLHpr 260 (447)
T COG0527 181 GFQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTADPRIVPDARLLPEISYEEALELAYLGAKVLHPR 260 (447)
T ss_pred CceeecCCCCEEEeCCCcHHHHHHHHHHHcCCCEEEEEECCCCCccCCCCCCCcceEcCccCHHHHHHHHHCCchhcCHH
Confidence 9843 25689999999999999999999999999999999999999999999999998875 89999999
Q ss_pred HHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEecCCCC
Q 027731 171 AITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNS 212 (219)
Q Consensus 171 aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~~~~ 212 (219)
+..+|.+++||++|.|.++|+ ..||+|..+...
T Consensus 261 av~pa~~~~Ip~~i~~t~~p~---------~~GTlI~~~~~~ 293 (447)
T COG0527 261 AVEPAMRSGIPLRIKNTFNPD---------APGTLITAETES 293 (447)
T ss_pred HHHHHHhcCCcEEEEecCCCC---------CCceEEecCCcC
Confidence 999999999999999999986 479999987543
No 27
>PRK08841 aspartate kinase; Validated
Probab=99.98 E-value=1.1e-30 Score=228.76 Aligned_cols=198 Identities=24% Similarity=0.311 Sum_probs=154.8
Q ss_pred HHHHHHHHHHHCCCeEEEEECCch-HHHhH-HHhcc-CCC-CcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccc
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGN-IFRGA-SAAGN-SGL-DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM 77 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~-~~~~~-~~~~~-~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~ 77 (219)
+++++|+++++.|+++|+||||++ ....+ ..... ... +++..+.+.+.++.++..+++.+|++.|+++.++++++.
T Consensus 21 ~va~~I~~~~~~g~~vvvVvSa~~~~td~ll~~~~~~~~~~~~~~~d~l~s~GE~~s~~lla~~L~~~Gi~a~~l~~~~~ 100 (392)
T PRK08841 21 TVAEHIIKAKNDGNQVVVVVSAMAGETNRLLGLAKQVDSVPTARELDVLLSAGEQVSMALLAMTLNKLGYAARSLTGAQA 100 (392)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCchHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEehhHc
Confidence 578999999999999999998864 33322 21111 111 122345555567788999999999999999999887764
Q ss_pred cccc-----ch---HHH-HHHHHHHhCCCEEEEeCCCC---------CCccChHHHHHHHHHhcCCceEEeeeccCcccc
Q 027731 78 SEVA-----EP---YIR-RRAVRHLEKGRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYD 139 (219)
Q Consensus 78 ~~~~-----~~---~~~-~~~~~~l~~g~ipIv~g~~g---------~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~ 139 (219)
..+. +. .++ ..+.++++.+.|||++|+.+ ..+++||++|+.+|.+|+||++++||||||||+
T Consensus 101 ~i~t~~~~~~~~i~~~~~~~i~~ll~~~~vpVv~Gf~g~~~~g~~ttlgrggsD~tAa~lA~~L~Ad~l~i~TDVdGVyt 180 (392)
T PRK08841 101 NIVTDNQHNDATIKHIDTSTITELLEQDQIVIVAGFQGRNENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYT 180 (392)
T ss_pred CEEecCCCCCceechhhHHHHHHHHhCCCEEEEeCCcccCCCCCEEEeCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCc
Confidence 3211 11 122 33557889999999999732 135699999999999999999999999999999
Q ss_pred CCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEecC
Q 027731 140 DNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 209 (219)
Q Consensus 140 ~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~ 209 (219)
+||+.+|+|+++++++|+|+.++ |.+++|++|+++|.++|+|++|.|++++. .||+|..+
T Consensus 181 ~DP~~v~~A~~i~~is~~ea~ela~~Ga~vlhp~ai~~a~~~~Ipi~i~n~~~~~----------~GT~I~~~ 243 (392)
T PRK08841 181 CDPRVVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRVLSSFEVG----------EGTLIKGE 243 (392)
T ss_pred CCCCCCCCceEcccccHHHHHHHHhcCccccCHHHHHHHHHCCCeEEEEecCCCC----------CCeEEEec
Confidence 99999999999999999987764 88899999999999999999999998752 59999654
No 28
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=99.97 E-value=4.6e-31 Score=211.22 Aligned_cols=202 Identities=27% Similarity=0.388 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCC-------CcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGL-------DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 74 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~ 74 (219)
++|++|+. ..-.++|||||||||+| +.++++++ ++.....++.....+|..++ +.|.++|+++++..|
T Consensus 28 ria~eI~~--~~~~~livVHGgGSFGH--p~Ak~~~~~~~~~~~s~~G~~~~~~am~~L~~~V~-~~l~~~Gv~av~~~P 102 (252)
T COG1608 28 RIAREISN--GKPEKLIVVHGGGSFGH--PAAKEFGLEGLKNYLSPLGFSLTHLAMLELNSIVV-DALLDAGVRAVSVVP 102 (252)
T ss_pred HHHHHHhc--CCcccEEEEecCccccC--HHHHHhCccccccccCccchHHHHHHHHHHHHHHH-HHHHhcCCccccccC
Confidence 45555554 22358999999999965 54555555 11222334444456777765 678889999975444
Q ss_pred cccccccch--HH-HHHHHHHHhCCCEEEEeCC------CCCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCC
Q 027731 75 FRMSEVAEP--YI-RRRAVRHLEKGRVVIFAAG------TGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRN 145 (219)
Q Consensus 75 ~~~~~~~~~--~~-~~~~~~~l~~g~ipIv~g~------~g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~ 145 (219)
.+...+..+ |. -..+.++|+.|++|+++|+ .+..++|+|.++.++|..|++|+++|+|||||||++||.+.
T Consensus 103 ~s~~~~~gr~~~~~l~~i~~~l~~gfvPvl~GDVv~d~~~g~~IiSGDdIv~~LA~~l~pd~v~f~tdVdGVy~~~p~~~ 182 (252)
T COG1608 103 ISFSTFNGRILYTYLEAIKDALEKGFVPVLYGDVVPDDDNGYEIISGDDIVLHLAKELKPDRVIFLTDVDGVYDRDPGKV 182 (252)
T ss_pred cceeecCCceeechHHHHHHHHHcCCEeeeecceEEcCCCceEEEeccHHHHHHHHHhCCCEEEEEecCCceecCCCCcC
Confidence 333211111 11 1345679999999999995 23567999999999999999999999999999999999999
Q ss_pred CCCcccccccHHHHhh-CC----CCCc--hHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEec
Q 027731 146 PNARLLDTLTYQEVTS-KD----LSVM--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 208 (219)
Q Consensus 146 ~~a~~i~~i~~~e~~~-~g----~~~~--k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~ 208 (219)
|+++.++++....... .+ +++| |++++....+.+.+++++|+++|++|.+++.|+.+||+|.+
T Consensus 183 p~~~~l~~i~~~~~~~gs~~~DVTGGi~~Kl~~~~~~~~~~~~vyi~ng~~~~ni~~~l~G~~vGT~I~~ 252 (252)
T COG1608 183 PDARLLSEIEGRVALGGSGGTDVTGGIAKKLEALLEIARYGKEVYIFNGNKPENIYRALRGENVGTRIDG 252 (252)
T ss_pred ccccchhhhhhhhhhcCcCcccchhhHHHHHHHHHHHHhcCceEEEECCCCHHHHHHHhcCCCCceEecC
Confidence 9999988887532221 11 3444 99999999999999999999999999999999999999863
No 29
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]
Probab=99.97 E-value=4e-31 Score=209.93 Aligned_cols=206 Identities=22% Similarity=0.332 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCC-----c-----ChHHHHHHHHHHHHHHH---HHHHHHhcCCC
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLD-----R-----SSADYIGMLATVMNAIF---LQATMESIGIP 68 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~l---~~~~l~~~gi~ 68 (219)
.|++++.+|++.|+++++|+ +|+++-|.+.++...+. + ......++.|...+..| +..+|.++|+.
T Consensus 36 ~IVEqV~~L~~~G~evilVS-SGaVA~G~qrLr~~~~~s~s~r~~l~~~~~l~e~rA~AAvGQ~~Lmalye~lF~Qy~~~ 114 (285)
T KOG1154|consen 36 SIVEQVSELQRMGREVILVS-SGAVAFGRQRLRQELLPSSSMRQTLKPQSELAEKRACAAVGQSGLMALYETLFTQYGIT 114 (285)
T ss_pred HHHHHHHHHHhcCceEEEEe-cchhhhhHHHhhhhhccchhHHHhhCCccchhhHHHHHHhCcchHHHHHHHHHHHhccc
Confidence 58999999999999999999 57777677776632111 1 12334455555544443 56789999999
Q ss_pred eeEecccccccccchH--HH--HHHHHHHhCCCEEEEeCCC-----CCCccC---hHHHHHHHHHhcCCceEEeeeccCc
Q 027731 69 TRVQTAFRMSEVAEPY--IR--RRAVRHLEKGRVVIFAAGT-----GNPFFT---TDTAAALRCAEINAEVVLKATNVDG 136 (219)
Q Consensus 69 a~~~~~~~~~~~~~~~--~~--~~~~~~l~~g~ipIv~g~~-----g~~~~~---sD~~Aa~lA~~l~Ad~liiltDV~G 136 (219)
+. |.+.+..|+.+.. .| ..+.++|..+.|||+|.++ +.++.+ ||++|+.+|.+++||.|+++|||||
T Consensus 115 iA-QvLvT~~Di~d~~~r~Nl~~Ti~eLL~m~viPIvNeNDavs~~~~~~~D~~dNDsLsA~laaei~ADlLilLsDVdg 193 (285)
T KOG1154|consen 115 IA-QVLVTRNDILDEQQRKNLQNTISELLSMNVIPIVNENDAVSPREIPFGDSSDNDSLAAILAAEIKADLLILLSDVDG 193 (285)
T ss_pred hh-eeeecCcchhhHHHHHHHHHHHHHHHhCCceeeecCCCccCCcccccCCCCcccHHHHHHHHHhccCEEEEEecccc
Confidence 75 7778877776432 22 3355799999999999974 346666 9999999999999999999999999
Q ss_pred cccCCCCCCCCCcccccccHHHHh---------hCCCCCc--hHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceE
Q 027731 137 VYDDNPRRNPNARLLDTLTYQEVT---------SKDLSVM--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTL 205 (219)
Q Consensus 137 v~~~dP~~~~~a~~i~~i~~~e~~---------~~g~~~~--k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~ 205 (219)
+|+.+|...| .++++..+..+-. .+|+++| |+.||..|...|++|.|+||..|+.|.+++.|..+||.
T Consensus 194 lYt~PPd~~~-~~li~~~~~~~~~v~~tfG~~SkvGtGGM~tKv~AA~~A~~~Gv~viI~~g~~p~~I~~iv~g~kvgt~ 272 (285)
T KOG1154|consen 194 LYTGPPDADP-SKLIHTFSPGDPQVSTTFGSKSKVGTGGMETKVKAAVNALNAGVSVIITNGDAPENITDIVEGKKVGTF 272 (285)
T ss_pred cccCCCCCCc-ceeeeeeccCCCCCccccCccCccCcCcchhhHHHHHHHhcCCceEEEeCCCChHHHHHHHhhhhhhhh
Confidence 9997765444 5788877654322 2356666 99999999999999999999999999999999999999
Q ss_pred EecCC
Q 027731 206 IGGTW 210 (219)
Q Consensus 206 i~~~~ 210 (219)
|....
T Consensus 273 f~~~~ 277 (285)
T KOG1154|consen 273 FEQLK 277 (285)
T ss_pred hhhcc
Confidence 97643
No 30
>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional
Probab=99.97 E-value=1e-30 Score=218.95 Aligned_cols=201 Identities=21% Similarity=0.272 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHHHhH-HHhcc-----C---C--CCcCh---HHHHHHHHHHHHHHHHHHHHHhcCC
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGN-----S---G--LDRSS---ADYIGMLATVMNAIFLQATMESIGI 67 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~-~~~~~-----~---~--~~~~~---~~~~~~~~~~~~~~l~~~~l~~~gi 67 (219)
+++++|+.+++.|.++|||||||++.+.+ .+.+. . | ++.++ .+.+.+....+|..++ +.|+++|+
T Consensus 16 ~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~~gi~~~~~~~~~g~~~rvt~~~~l~~~~~a~~~ln~~lv-~~L~~~Gv 94 (268)
T PRK14058 16 DALIDVASLWADGERVVLVHGGSDEVNELLERLGIEPRFVTSPSGVTSRYTDRETLEVFIMAMALINKQLV-ERLQSLGV 94 (268)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHcCCCceEEeCCCCCceEeCCHHHHHHHHHHHHHHHHHHH-HHHHhCCC
Confidence 57899999999999999999999986643 23331 0 2 22222 2333433348888887 48999999
Q ss_pred CeeEeccccccccc-------------------chH------HH-HHHHHHHhCCCEEEEeCC----CCC-CccChHHHH
Q 027731 68 PTRVQTAFRMSEVA-------------------EPY------IR-RRAVRHLEKGRVVIFAAG----TGN-PFFTTDTAA 116 (219)
Q Consensus 68 ~a~~~~~~~~~~~~-------------------~~~------~~-~~~~~~l~~g~ipIv~g~----~g~-~~~~sD~~A 116 (219)
+++++++.+...+. ..| ++ +.+..+|+.|.|||++|+ .|. .++++|.+|
T Consensus 95 ~a~~l~~~~~~l~~~~~~~~~~~~~~g~~~~~d~g~~g~v~~v~~~~i~~ll~~g~iPVi~~~~~~~~g~~~~i~~D~~A 174 (268)
T PRK14058 95 NAVGLSGLDGGLLEGKRKKAVRVVEEGKKKIIRGDYTGKIEEVNTDLLKLLLKAGYLPVVAPPALSEEGEPLNVDGDRAA 174 (268)
T ss_pred CccccCcccCCEEEEEEecccccccCCcceeccCCceeEEEEECHHHHHHHHHCCCEEEEeCceECCCCcEEecCHHHHH
Confidence 99988776542110 001 22 345578999999999985 222 358999999
Q ss_pred HHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC-----CCCCchHHHHHHHHhCCC-cEEEEecCCC
Q 027731 117 ALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVMDMTAITLCQENNI-PVVVFNLNQP 190 (219)
Q Consensus 117 a~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-----g~~~~k~~aa~~a~~~gi-~v~I~~g~~~ 190 (219)
+.+|.+++|++|+|+|||||||++||. +++++++++++|+.++ |+|..|++++..+.++|+ +++|+|+++|
T Consensus 175 ~~lA~~l~A~~li~ltdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~~~tGgM~~Kl~aa~~a~~~Gv~~v~I~~g~~~ 251 (268)
T PRK14058 175 AAIAGALKAEALVLLSDVPGLLRDPPD---EGSLIERITPEEAEELSKAAGGGMKKKVLMAAEAVEGGVGRVIIADANVD 251 (268)
T ss_pred HHHHHHcCCCEEEEEeCChhhccCCCC---CCcCccCcCHHHHHHHhhccCCccHHHHHHHHHHHHcCCCEEEEEcCCCc
Confidence 999999999999999999999999883 4689999999887664 667779999999999999 6999999999
Q ss_pred chHHHHhcCCCCceEEec
Q 027731 191 GNIAKAIQGERVGTLIGG 208 (219)
Q Consensus 191 ~~i~~~l~g~~~GT~i~~ 208 (219)
+.+.++++|+ ||+|.+
T Consensus 252 ~~l~~~l~G~--GT~I~~ 267 (268)
T PRK14058 252 DPISAALAGE--GTVIVN 267 (268)
T ss_pred chHHHHhCCC--ceEEec
Confidence 9999999875 999975
No 31
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=99.97 E-value=1.1e-29 Score=210.15 Aligned_cols=196 Identities=27% Similarity=0.342 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHCCCeEEEEE-----CCchHH-HhHHHhc-cCCCCc--ChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEe
Q 027731 2 AIAREVASVTRLGIEVAIVV-----GGGNIF-RGASAAG-NSGLDR--SSADYIGMLATVMNAIFLQATMESIGIPTRVQ 72 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~-----GgG~~~-~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~ 72 (219)
+++++|+++++.|+++|||| |||... +.+..+. ..+.+. ...+.+.+.+...+..++.++|+++|+++..+
T Consensus 19 ~~~~~I~~~~~~g~~~vvV~sa~g~~G~~~~~~~l~~~~~~~~~~~t~~~~~~~~~~Ge~~~~~~~~~~l~~~Gi~a~~l 98 (244)
T cd04260 19 QVAKKVKQAVDEGYKPVVVVSAMGRKGDPYATDTLINLVYAENSDISPRELDLLMSCGEIISAVVLTSTLRAQGLKAVAL 98 (244)
T ss_pred HHHHHHHHHHHCCCCeEEEEECCCCCCCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEe
Confidence 68999999999998877666 333222 1122111 122333 23344444556677767889999999999988
Q ss_pred ccccccc-----cc--c-hHHH-HHHHHHHhCCCEEEEeCC---CCC------CccChHHHHHHHHHhcCCceEEeeecc
Q 027731 73 TAFRMSE-----VA--E-PYIR-RRAVRHLEKGRVVIFAAG---TGN------PFFTTDTAAALRCAEINAEVVLKATNV 134 (219)
Q Consensus 73 ~~~~~~~-----~~--~-~~~~-~~~~~~l~~g~ipIv~g~---~g~------~~~~sD~~Aa~lA~~l~Ad~liiltDV 134 (219)
++.+... +. + .+++ +.+.++|+.+.|||++|+ ++. .++++|++|+.+|.+|+|+++++||||
T Consensus 99 ~~~~~~lit~~~~~~~~v~~~~~~~l~~ll~~g~VPVv~g~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV 178 (244)
T cd04260 99 TGAQAGILTDDNYSNAKIIKVNPKKILSALKEGDVVVVAGFQGVTEDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDV 178 (244)
T ss_pred chHHcCEEecCCCCceeeeccCHHHHHHHHhCCCEEEecCCcccCCCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECC
Confidence 7654322 11 1 1223 335578999999999986 221 235899999999999999999999999
Q ss_pred CccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731 135 DGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 207 (219)
Q Consensus 135 ~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~ 207 (219)
||||++||+.+|++++|++++++|+.++ |..++|+.|++++.++++|++|.|+++|. .||+|+
T Consensus 179 ~GVy~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~v~~~~a~~~~~~~~i~v~I~~~~~~~----------~gt~i~ 244 (244)
T cd04260 179 DGIMTADPRVVPNARILDVVSYNEVFQMAHQGAKVIHPRAVEIAMQANIPIRIRSTMSEN----------PGTLIT 244 (244)
T ss_pred CcCCcCCCCCCCCCeEcccCCHHHHHHHHHcCchhcCHHHHHHHHHcCCeEEEecCCCCC----------CCCEeC
Confidence 9999999999999999999999988774 77789999999999999999999999763 499884
No 32
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=99.97 E-value=2e-29 Score=207.18 Aligned_cols=202 Identities=24% Similarity=0.318 Sum_probs=161.6
Q ss_pred HHHHHHHHHHHCCCeEEEEECCch-HHHhHHHhcc-----CCCCcChH---HHHHH-HHHHHHHHHHHHHHHhcCCCeeE
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGN-IFRGASAAGN-----SGLDRSSA---DYIGM-LATVMNAIFLQATMESIGIPTRV 71 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~-~~~~~~~~~~-----~~~~~~~~---~~~~~-~~~~~~~~l~~~~l~~~gi~a~~ 71 (219)
+++++|+.|+..|.++|||||||+ +...+..++. .|++.++. +...+ ++..+|..++ +.|+++|..+++
T Consensus 22 ~~~~di~lL~~~G~~~VvVHGggp~I~~~l~~~gie~~f~~glRvTd~~tlevv~mvl~G~vNk~iv-a~l~~~g~~avG 100 (265)
T COG0548 22 AFASDIALLKSVGIRPVVVHGGGPQIDEMLAKLGIEPEFVKGLRVTDAETLEVVEMVLGGTVNKEIV-ARLSKHGGQAVG 100 (265)
T ss_pred HHHHHHHHHHHCCCcEEEEeCCchHHHHHHHHcCCCCeeeCCEEcCCHHHHHHHHHHHHHHHHHHHH-HHHHHhCCccee
Confidence 578999999999999999999998 5566666653 46666554 44444 4448888886 589999999999
Q ss_pred eccccccccc-c----h------------HHHHHH-HHHHhCCCEEEEeCC----CCCC-ccChHHHHHHHHHhcCCceE
Q 027731 72 QTAFRMSEVA-E----P------------YIRRRA-VRHLEKGRVVIFAAG----TGNP-FFTTDTAAALRCAEINAEVV 128 (219)
Q Consensus 72 ~~~~~~~~~~-~----~------------~~~~~~-~~~l~~g~ipIv~g~----~g~~-~~~sD~~Aa~lA~~l~Ad~l 128 (219)
+++.+...+. + . .+|..+ ..++++++|||++|. +|.. .+++|+.|..+|.+|+|++|
T Consensus 101 lsg~Dg~li~A~~~~~~~~id~g~vG~i~~Vn~~~i~~ll~~~~IpViapia~~~~G~~~NvnaD~~A~~iA~aLkAekL 180 (265)
T COG0548 101 LSGVDGNLVTAKKLDVDDGVDLGYVGEIRKVNPELIERLLDNGAIPVIAPIAVDEDGETLNVNADTAAGALAAALKAEKL 180 (265)
T ss_pred eeecCCCEEEEEEcccccccccceeeeEEEECHHHHHHHHhCCCceEEecceECCCCcEEeeCHHHHHHHHHHHcCCCeE
Confidence 8887743221 0 0 134544 468999999999984 4554 49999999999999999999
Q ss_pred EeeeccCccccCCCCCCCCCcccccccHHHHhhC-------CCCCchHHHHHHHHhCCCc-EEEEecCCCchH-HHHhcC
Q 027731 129 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQENNIP-VVVFNLNQPGNI-AKAIQG 199 (219)
Q Consensus 129 iiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-------g~~~~k~~aa~~a~~~gi~-v~I~~g~~~~~i-~~~l~g 199 (219)
+++|||+||++++|. | +++++++.+|+.++ |+|..|+++|..|++.|++ ++|.|++.++.+ .++|++
T Consensus 181 i~ltdv~Gvl~~~~~--~--s~i~~~~~~~~~~li~~~~i~~GMi~Kv~~a~~A~~~Gv~~v~ii~g~~~~~ll~eLFt~ 256 (265)
T COG0548 181 ILLTDVPGVLDDKGD--P--SLISELDAEEAEELIEQGIITGGMIPKVEAALEALESGVRRVHIISGRVPHSLLLELFTR 256 (265)
T ss_pred EEEeCCcccccCCCC--c--eeeccCCHHHHHHHHhcCCccCccHHHHHHHHHHHHhCCCeEEEecCCCcchHHHHHhcC
Confidence 999999999998762 2 68999999887764 5677899999999999995 999999999996 578999
Q ss_pred CCCceEEec
Q 027731 200 ERVGTLIGG 208 (219)
Q Consensus 200 ~~~GT~i~~ 208 (219)
+.+||.|.+
T Consensus 257 ~giGT~i~~ 265 (265)
T COG0548 257 DGIGTMIVR 265 (265)
T ss_pred CCcceEecC
Confidence 999999863
No 33
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=99.97 E-value=6.3e-29 Score=209.58 Aligned_cols=202 Identities=16% Similarity=0.240 Sum_probs=154.8
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHHHh-HHHhcc-----CCCCcChHHH---HHH-HHHHHHHHHHHHHHHhcCCCeeE
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGN-----SGLDRSSADY---IGM-LATVMNAIFLQATMESIGIPTRV 71 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~~~-~~~~~~-----~~~~~~~~~~---~~~-~~~~~~~~l~~~~l~~~gi~a~~ 71 (219)
+++++|+.|+..|.++|||||||++.+. ..+.+. .|++.+..+. +.+ ++..+|..++ +.|.++|+++++
T Consensus 43 ~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~~g~~~~~~~G~rvT~~~~l~~~~~~l~g~ln~~lv-~~L~~~Gv~av~ 121 (284)
T CHL00202 43 DIIKDILFLSCIGLKIVVVHGGGPEINFWLKQLNISPKFWNGIRVTDKVTMEIVEMVLAGKVNKDLV-GSINANGGKAVG 121 (284)
T ss_pred HHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHCCCCCEeECCcccCCHHHHHHHHHHHhhHHHHHHH-HHHHhCCCCeee
Confidence 5889999999999999999999997653 233332 3555544333 333 4567888876 588999999999
Q ss_pred eccccccccc-------------c-hHHHH-HHHHHHhCCCEEEEeCC----CCCC-ccChHHHHHHHHHhcCCceEEee
Q 027731 72 QTAFRMSEVA-------------E-PYIRR-RAVRHLEKGRVVIFAAG----TGNP-FFTTDTAAALRCAEINAEVVLKA 131 (219)
Q Consensus 72 ~~~~~~~~~~-------------~-~~~~~-~~~~~l~~g~ipIv~g~----~g~~-~~~sD~~Aa~lA~~l~Ad~liil 131 (219)
+++.+...+. + ..++. .+..+|+.|.|||+++. .|.. .+++|++|+.+|.+|+|++|+|+
T Consensus 122 l~~~d~~~i~a~~~~~~d~~~~G~i~~v~~~~i~~ll~~g~iPVi~~~~~~~~g~~~ni~~D~~A~~lA~~l~Ad~li~l 201 (284)
T CHL00202 122 LCGKDANLIVARASDKKDLGLVGEIQQVDPQLIDMLLEKNYIPVIASVAADHDGQTYNINADVVAGEIAAKLNAEKLILL 201 (284)
T ss_pred eeeccCCEEEEEeCCCcccccceeEEecCHHHHHHHHHCCCEEEECCCccCCCCcEEecCHHHHHHHHHHHhCCCEEEEE
Confidence 8877543110 0 01233 35578999999999984 2333 47999999999999999999999
Q ss_pred eccCccccCCCCCCCCCcccccccHHHHhhC-------CCCCchHHHHHHHHhCCCc-EEEEecCCCchH-HHHhcCCCC
Q 027731 132 TNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQENNIP-VVVFNLNQPGNI-AKAIQGERV 202 (219)
Q Consensus 132 tDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-------g~~~~k~~aa~~a~~~gi~-v~I~~g~~~~~i-~~~l~g~~~ 202 (219)
|||||||+++ .+| .+++++++++|+.++ |+|..|+++|..+.++|++ ++|+++++|+.+ .++|+++..
T Consensus 202 Tdv~Gv~~~~--~d~-~~~i~~i~~~e~~~l~~~g~~tGGM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~g~ 278 (284)
T CHL00202 202 TDTPGILADI--NDP-NSLISTLNIKEARNLASTGIISGGMIPKVNCCIRALAQGVEAAHIIDGKEKHALLLEILTEKGI 278 (284)
T ss_pred eCChhhcCCC--CCC-CCccccccHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHhcCCCC
Confidence 9999999853 123 379999999887653 4556699999999999997 899999999975 799999999
Q ss_pred ceEEe
Q 027731 203 GTLIG 207 (219)
Q Consensus 203 GT~i~ 207 (219)
||+|.
T Consensus 279 GT~i~ 283 (284)
T CHL00202 279 GSMLV 283 (284)
T ss_pred ceEEe
Confidence 99985
No 34
>PLN02512 acetylglutamate kinase
Probab=99.97 E-value=1.3e-28 Score=209.76 Aligned_cols=203 Identities=19% Similarity=0.280 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHHHhHH-Hhcc-----CCCCcChHH---HHHH-HHHHHHHHHHHHHHHhcCCCeeE
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIFRGAS-AAGN-----SGLDRSSAD---YIGM-LATVMNAIFLQATMESIGIPTRV 71 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~-~~~~-----~~~~~~~~~---~~~~-~~~~~~~~l~~~~l~~~gi~a~~ 71 (219)
+++++|+.|++.|.++|||||||++.+.+. ..+. .|++.+... .+.+ ++..+|..++ +.|+++|+++++
T Consensus 67 ~~~~di~~l~~~g~~iVlVHGgG~~i~~~~~~~gi~~~~~~G~rvT~~~~lei~~~~l~g~ln~~lv-~~L~~~Gv~av~ 145 (309)
T PLN02512 67 GVIRDLVLLSCVGLRPVLVHGGGPEINSWLKKVGIEPQFKNGLRVTDAETMEVVEMVLVGKVNKSLV-SLINKAGGTAVG 145 (309)
T ss_pred HHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHcCCCCcCCCCCcCCCHHHHHHHHHHHhhHHHHHHH-HHHHHcCCCeEE
Confidence 478899989999999999999999876432 3321 234443333 2333 3457888876 689999999999
Q ss_pred ecccccc-----------ccc---ch-HHH-HHHHHHHhCCCEEEEeCC----CCC-CccChHHHHHHHHHhcCCceEEe
Q 027731 72 QTAFRMS-----------EVA---EP-YIR-RRAVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLK 130 (219)
Q Consensus 72 ~~~~~~~-----------~~~---~~-~~~-~~~~~~l~~g~ipIv~g~----~g~-~~~~sD~~Aa~lA~~l~Ad~lii 130 (219)
+++.+.. ++. +. .++ +.+..+|+.|.|||++|+ .+. ..+++|++|+++|.+|+|++|+|
T Consensus 146 l~g~d~~~i~a~~~~~~~~~~~~G~i~~v~~~~i~~lL~~g~IPVi~~~~~d~~g~~~~i~~D~~A~~lA~~L~Ad~li~ 225 (309)
T PLN02512 146 LSGKDGRLLRARPSPNSADLGFVGEVTRVDPTVLRPLVDDGHIPVIATVAADEDGQAYNINADTAAGEIAAALGAEKLIL 225 (309)
T ss_pred eehhhCCEEEEEEcCcCccccccceeeecCHHHHHHHHhCCCEEEEeCceECCCCCEeccCHHHHHHHHHHHcCCCEEEE
Confidence 8776532 111 10 123 335578999999999995 222 34699999999999999999999
Q ss_pred eeccCccccCCCCCCCCCcccccccHHHHhhC-------CCCCchHHHHHHHHhCCCc-EEEEecCCCchH-HHHhcCCC
Q 027731 131 ATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQENNIP-VVVFNLNQPGNI-AKAIQGER 201 (219)
Q Consensus 131 ltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-------g~~~~k~~aa~~a~~~gi~-v~I~~g~~~~~i-~~~l~g~~ 201 (219)
+|||||||+++| +++++|++++++|+.++ |+|..|++++..+.+.|++ ++|+++..|+.+ .++++++.
T Consensus 226 lTdV~GV~~~~~---~~~~lI~~i~~~e~~~l~~~~~vtGGM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~~l~~~~~ 302 (309)
T PLN02512 226 LTDVAGVLEDKD---DPGSLVKELDIKGVRKLIADGKIAGGMIPKVECCVRSLAQGVKTAHIIDGRVPHSLLLEILTDEG 302 (309)
T ss_pred EeCCcceeCCCC---CCcCCCcccCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHcCCCEEEEecCCCCChHHHHHhcCCC
Confidence 999999998764 24789999999887653 4556699999999999996 999999999887 47888888
Q ss_pred CceEEec
Q 027731 202 VGTLIGG 208 (219)
Q Consensus 202 ~GT~i~~ 208 (219)
.||+|.+
T Consensus 303 ~GT~I~~ 309 (309)
T PLN02512 303 AGTMITG 309 (309)
T ss_pred CeeEEeC
Confidence 9999974
No 35
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=99.97 E-value=8.6e-29 Score=209.71 Aligned_cols=155 Identities=28% Similarity=0.379 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccc-----ccc--------hHHHHHHHHHHhCCCEEEEeCCCC----
Q 027731 44 DYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSE-----VAE--------PYIRRRAVRHLEKGRVVIFAAGTG---- 106 (219)
Q Consensus 44 ~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~-----~~~--------~~~~~~~~~~l~~g~ipIv~g~~g---- 106 (219)
+.+.+.++++|+.+++.+|+++|+++.++++.+... +.+ .+++..+..+++.+.|||++||.+
T Consensus 119 d~i~s~GE~lSa~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~i~~~l~~ll~~~~vpVv~Gfig~~~~ 198 (298)
T cd04244 119 DYIVSFGERLSAPIFSAALRSLGIKARALDGGEAGIITDDNFGNARPLPATYERVRKRLLPMLEDGKIPVVTGFIGATED 198 (298)
T ss_pred hHhccHhHHHHHHHHHHHHHhCCCCeEEEcHHHcceeecCcccccccchhHHHHHHHHHHHHhhcCCEEEEeCccccCCC
Confidence 444456788999999999999999999988766431 111 112334456778899999999622
Q ss_pred -----CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhC
Q 027731 107 -----NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQEN 178 (219)
Q Consensus 107 -----~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~ 178 (219)
..+++||++|+.+|.+|+|+++++||||||||++||+.+|+++++++++|+|+.++ |.+++|++|+.+|.++
T Consensus 199 g~~ttlgRggsD~~A~~~A~~l~a~~l~i~tdV~Gv~~~dP~~~~~a~~i~~lsy~Ea~el~~~Ga~vlhp~ai~~a~~~ 278 (298)
T cd04244 199 GAITTLGRGGSDYSATIIGAALDADEIWIWKDVDGVMTADPRIVPEARTIPRLSYAEAMELAYFGAKVLHPRTVEPAMEK 278 (298)
T ss_pred CCEEEecCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcCccCHHHHHHHHhCCCcccCHHHHHHHHHc
Confidence 14679999999999999999999999999999999999999999999999998875 8899999999999999
Q ss_pred CCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731 179 NIPVVVFNLNQPGNIAKAIQGERVGTLIG 207 (219)
Q Consensus 179 gi~v~I~~g~~~~~i~~~l~g~~~GT~i~ 207 (219)
+||++|.|+++|+ ..||+|+
T Consensus 279 ~Ipi~i~n~~~p~---------~~GT~I~ 298 (298)
T cd04244 279 GIPVRVKNTFNPE---------APGTLIT 298 (298)
T ss_pred CCcEEEeeCCCCC---------CCCCEeC
Confidence 9999999999987 5799984
No 36
>PRK06635 aspartate kinase; Reviewed
Probab=99.97 E-value=5.6e-29 Score=219.78 Aligned_cols=198 Identities=27% Similarity=0.372 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHCCCeEEEEECC-chHHHh-HHHhcc-CCC-CcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccc
Q 027731 2 AIAREVASVTRLGIEVAIVVGG-GNIFRG-ASAAGN-SGL-DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM 77 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~Gg-G~~~~~-~~~~~~-~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~ 77 (219)
+++++|+++++.|+++|+|||| |.+... ....+. ... +....+.+.+.++.+|..++..+|+++|+++.++++.+.
T Consensus 21 ~~~~~i~~~~~~g~~~vvV~sg~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ge~~~~~~~~~~l~~~g~~a~~l~~~~~ 100 (404)
T PRK06635 21 RVAERVKAEVEAGHQVVVVVSAMGGTTDELLDLAKEVSPLPDPRELDMLLSTGEQVSVALLAMALQSLGVKARSFTGWQA 100 (404)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCCCcHHHHHHHHHHhccCCCHHHHHHHhhhhHHHHHHHHHHHHHhCCCCeEEeChhhC
Confidence 5889999999999999988876 444432 233321 111 223334444456678998888999999999998877654
Q ss_pred cccc-ch-------HHH-HHHHHHHhCCCEEEEeCCCC---------CCccChHHHHHHHHHhcCCceEEeeeccCcccc
Q 027731 78 SEVA-EP-------YIR-RRAVRHLEKGRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYD 139 (219)
Q Consensus 78 ~~~~-~~-------~~~-~~~~~~l~~g~ipIv~g~~g---------~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~ 139 (219)
..+. .. ..+ ..+.++|+.|.|||++|+.+ ..+++||++|+++|..|+||++++||||||||+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ipVi~g~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~Gv~~ 180 (404)
T PRK06635 101 GIITDSAHGKARITDIDPSRIREALDEGDVVVVAGFQGVDEDGEITTLGRGGSDTTAVALAAALKADECEIYTDVDGVYT 180 (404)
T ss_pred CEEecCCCCceEeeecCHHHHHHHHhCCCEEEecCccEeCCCCCEEecCCCChHHHHHHHHHHhCCCEEEEEEcCCCCCc
Confidence 2211 10 112 34557899999999998622 135699999999999999999999999999999
Q ss_pred CCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEecC
Q 027731 140 DNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 209 (219)
Q Consensus 140 ~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~ 209 (219)
+||+.+|+++++++++++|+.++ |.+++|++|+.++.++++|++|.|++++ ..||+|...
T Consensus 181 ~dP~~~~~a~~i~~i~~~e~~~l~~~g~~~~~~~a~~~~~~~~i~~~i~~~~~~----------~~gT~i~~~ 243 (404)
T PRK06635 181 TDPRIVPKARKLDKISYEEMLELASLGAKVLHPRSVEYAKKYNVPLRVRSSFSD----------NPGTLITGE 243 (404)
T ss_pred CCCCCCCCceECCccCHHHHHHHHHcCCcccCHHHHHHHHHcCceEEEEcCCCC----------CCCCEEeeC
Confidence 99999999999999999988874 7778999999999999999999999865 259999764
No 37
>PRK07431 aspartate kinase; Provisional
Probab=99.97 E-value=8e-29 Score=227.93 Aligned_cols=198 Identities=25% Similarity=0.355 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHCCCeEEEEECC-chHHHhHHHhccCCC-CcChHHHHHH---HHHHHHHHHHHHHHHhcCCCeeEecccc
Q 027731 2 AIAREVASVTRLGIEVAIVVGG-GNIFRGASAAGNSGL-DRSSADYIGM---LATVMNAIFLQATMESIGIPTRVQTAFR 76 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~Gg-G~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~l~~~~l~~~gi~a~~~~~~~ 76 (219)
+++++|+++++.|+++|||||| |.+.+.+..+.. .+ +..+.+...+ .++.++..+++.+|+++|+++.++++.+
T Consensus 21 ~~a~~I~~~~~~g~~vvvV~sa~g~~t~~l~~~~~-~~t~~~~~~~~~~~ls~Ge~~s~~l~~~~l~~~gi~a~~l~~~~ 99 (587)
T PRK07431 21 AVAQRIARTKEAGNDVVVVVSAMGKTTDELVKLAK-EISSNPPRREMDMLLSTGEQVSIALLSMALHELGQPAISLTGAQ 99 (587)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCchhHHHHHHHH-HhccCCCHHHHHHHHHHhHHHHHHHHHHHHHHCCCCeEEechhH
Confidence 5789999999999999999995 555544433321 12 1122233333 3457888888889999999999888765
Q ss_pred cccccch--------HHH-HHHHHHHhCCCEEEEeCCCCC-----------CccChHHHHHHHHHhcCCceEEeeeccCc
Q 027731 77 MSEVAEP--------YIR-RRAVRHLEKGRVVIFAAGTGN-----------PFFTTDTAAALRCAEINAEVVLKATNVDG 136 (219)
Q Consensus 77 ~~~~~~~--------~~~-~~~~~~l~~g~ipIv~g~~g~-----------~~~~sD~~Aa~lA~~l~Ad~liiltDV~G 136 (219)
...+... .++ +.+.++++.|.|||++|+.|. .++++|++|+.+|.+|+|+++++||||||
T Consensus 100 ~~~~~~~~~~~~~i~~~~~~~l~~~l~~g~vpVv~g~~g~~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~i~TDVdG 179 (587)
T PRK07431 100 VGIVTESEHGRARILEIKTDRIQRHLDAGKVVVVAGFQGISLSSNLEITTLGRGGSDTSAVALAAALGADACEIYTDVPG 179 (587)
T ss_pred cCeEecCCCCceeeeeccHHHHHHHHhCCCeEEecCCcCCCCCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 4322110 112 345678999999999986331 25679999999999999999999999999
Q ss_pred cccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEecCC
Q 027731 137 VYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW 210 (219)
Q Consensus 137 v~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~~ 210 (219)
||++||+.+|++++|++++++|+.++ |.++||++|+.++.++|+|++|.|++. + ..||+|.++.
T Consensus 180 Vyt~DP~~~~~a~~i~~i~~~e~~el~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~-~---------~~GT~i~~~~ 246 (587)
T PRK07431 180 VLTTDPRLVPEAQLMDEISCDEMLELASLGASVLHPRAVEIARNYGVPLVVRSSWS-D---------APGTLVTSPP 246 (587)
T ss_pred cCcCCCCCCCCCeECCCcCHHHHHHHHhCCCceEhHHHHHHHHHcCCcEEEecCCC-C---------CCCeEEEeCC
Confidence 99999999999999999999998774 888999999999999999999999872 2 3599998653
No 38
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=99.96 E-value=1.1e-28 Score=230.40 Aligned_cols=206 Identities=20% Similarity=0.284 Sum_probs=156.4
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCC---------CcChHHHHHHHHHHHHHHH---HHHHHHhcCCCe
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGL---------DRSSADYIGMLATVMNAIF---LQATMESIGIPT 69 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l---~~~~l~~~gi~a 69 (219)
+++++|++|++.|+++|||+ +|+.+.|+..++...+ +.......++++...+..| +...|+++++.+
T Consensus 33 ~l~~~i~~l~~~g~~vilVs-SGA~a~G~~~~~~~~~~~~~~~~~~~~~~~~~~qa~aa~gq~~L~~~y~~~f~~~~i~~ 111 (715)
T TIGR01092 33 SICEQLSELNSDGREVILVT-SGAVAFGRQRLRHRILVNSSFADLQKPQPELDGKACAAVGQSGLMALYETMFTQLDITA 111 (715)
T ss_pred HHHHHHHHHHHCCCEEEEEc-cchHHhchHHhccchhccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCee
Confidence 58999999999999999976 4555556565553221 1122334555655555544 456799999987
Q ss_pred eEecccccccccch--HHH--HHHHHHHhCCCEEEEeCCC-----CC-------CccChHHHHHHHHHhcCCceEEeeec
Q 027731 70 RVQTAFRMSEVAEP--YIR--RRAVRHLEKGRVVIFAAGT-----GN-------PFFTTDTAAALRCAEINAEVVLKATN 133 (219)
Q Consensus 70 ~~~~~~~~~~~~~~--~~~--~~~~~~l~~g~ipIv~g~~-----g~-------~~~~sD~~Aa~lA~~l~Ad~liiltD 133 (219)
. |..++..++.++ +.+ ..+..+|+.|.|||+++++ +. .++|||++|+++|.+++||+|+|+||
T Consensus 112 a-Q~Llt~~d~~~~~~~~~~~~~l~~lL~~g~iPVin~nD~V~~~~~~~~~~~g~~~d~D~lAa~lA~~l~Ad~LiilTD 190 (715)
T TIGR01092 112 A-QILVTDLDFRDEQFRRQLNETVHELLRMNVVPVVNENDAVSTRAAPYSDSQGIFWDNDSLAALLALELKADLLILLSD 190 (715)
T ss_pred E-EEEechhhcccHHHHHHHHHHHHHHHHCCCEEEEcCCCcccccccccccccceecchHHHHHHHHHHcCCCEEEEEeC
Confidence 5 556666666543 222 3355789999999999842 11 16899999999999999999999999
Q ss_pred cCccccCCCCCCCCCcccccccHHHHh-h--------C--CCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCC
Q 027731 134 VDGVYDDNPRRNPNARLLDTLTYQEVT-S--------K--DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERV 202 (219)
Q Consensus 134 V~Gv~~~dP~~~~~a~~i~~i~~~e~~-~--------~--g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~ 202 (219)
|||||++||+ +|++++|++++..+.. . . |+|..|++++..|.++|++++|+|+.+++.|.++++|+..
T Consensus 191 VdGVy~~dP~-~~~a~~I~~i~~~~~~~~i~~~~~~~~~tGGM~~Kl~aa~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~ 269 (715)
T TIGR01092 191 VEGLYDGPPS-DDDSKLIDTFYKEKHQGEITFGTKSRLGRGGMTAKVKAAVWAAYGGTPVIIASGTAPKNITKVVEGKKV 269 (715)
T ss_pred CCeeeCCCCC-CCCCeEeeeecccchhhhhccCcccccCCCCchHHHHHHHHHHHCCCeEEEeCCCCcchHHHHhcCCCC
Confidence 9999999996 6899999988764322 1 1 4455699999999999999999999999999999999989
Q ss_pred ceEEecCC
Q 027731 203 GTLIGGTW 210 (219)
Q Consensus 203 GT~i~~~~ 210 (219)
||+|.+++
T Consensus 270 GT~~~~~~ 277 (715)
T TIGR01092 270 GTLFHEDA 277 (715)
T ss_pred ceEecccc
Confidence 99997753
No 39
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=99.96 E-value=6.1e-29 Score=200.03 Aligned_cols=169 Identities=24% Similarity=0.333 Sum_probs=138.3
Q ss_pred CCeEEEEECCchHHHhHHHhc-cCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccccccchHHHHHHHHH
Q 027731 14 GIEVAIVVGGGNIFRGASAAG-NSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRH 92 (219)
Q Consensus 14 g~~vviV~GgG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~~~~~~~~~~~~ 92 (219)
|++++||+|||.||+.++... ..|+++...|+|+++++++|+.+++..+...+. . . ..++..+
T Consensus 24 ~~~v~iV~GGG~~A~~~r~~~~~~g~~~~~ad~mgilat~~na~~l~~~~~~~~~-------~------~---~~~~~~~ 87 (203)
T cd04240 24 GGGVVIVPGGGPFADVVRRYQERKGLSDAAAHWMAILAMEQYGYLLADLEPRLVA-------R------T---LAELTDV 87 (203)
T ss_pred CCCEEEEcCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhccCCcccc-------C------C---HHHHHHH
Confidence 789999999999987765443 478999999999999999999876532221110 0 0 1346678
Q ss_pred HhCCCEEEEeCC------C---CCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhCC
Q 027731 93 LEKGRVVIFAAG------T---GNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKD 163 (219)
Q Consensus 93 l~~g~ipIv~g~------~---g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g 163 (219)
++.+.+||+.++ . ..+++++|++|+++|..++|++|+++|||||||++| +++++++++.|+..
T Consensus 88 ~~~g~ipV~~P~~~~~~~~~~~~~~~~ttD~lAa~lA~~l~A~~Li~ltdVdGVy~~d------a~~i~~i~~~e~~~-- 159 (203)
T cd04240 88 LERGKIAILLPYRLLLDTDPLPHSWEVTSDSIAAWLAKKLGAKRLVIVTDVDGIYEKD------GKLVNEIAAAELLG-- 159 (203)
T ss_pred HHCCCcEEEeCchhhcccCCCCcccccCHHHHHHHHHHHcCCCEEEEEeCCccccCCC------CcCccccCHHHhCC--
Confidence 899999999985 1 136799999999999999999999999999999864 78999999887653
Q ss_pred CCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCC-CCceEE
Q 027731 164 LSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGE-RVGTLI 206 (219)
Q Consensus 164 ~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~-~~GT~i 206 (219)
.+.++..+++.+.++|++++|+|+++|+++.+++.|+ ..||+|
T Consensus 160 ~~~id~~~~~~~~~~gi~v~I~~g~~~~~l~~~l~g~~~~GT~I 203 (203)
T cd04240 160 ETSVDPAFPRLLTKYGIRCYVVNGDDPERVLAALRGREGVGTRI 203 (203)
T ss_pred CCeehhhHHHHHHhCCCeEEEECCCCccHHHHHHCCCCCCCCCC
Confidence 5566777788889999999999999999999999988 689975
No 40
>PRK08210 aspartate kinase I; Reviewed
Probab=99.96 E-value=2.1e-28 Score=216.05 Aligned_cols=198 Identities=24% Similarity=0.318 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHCCCeEEEEECC-chHHH-----hHHHhcc---CCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEe
Q 027731 2 AIAREVASVTRLGIEVAIVVGG-GNIFR-----GASAAGN---SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQ 72 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~Gg-G~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~ 72 (219)
+++++|++++++|+++||||+| |++++ .+..+.. ...++...+.+...++..+..++..+|+++|+++.++
T Consensus 21 ~~~~~i~~~~~~g~~~vvV~sa~g~~G~~~~t~~l~~~~~~~~~~~~~~~~~~l~~~Ge~~s~~~~~~~l~~~Gi~a~~l 100 (403)
T PRK08210 21 MAVNKIKKALKEGYKVVVVVSAMGRKGDPYATDTLLSLVGEEFSEISKREQDLLMSCGEIISSVVFSNMLNENGIKAVAL 100 (403)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCCCCCCCCccHHHHHHHHHhccCCChHHHHHHHhHhHHHHHHHHHHHHHhCCCCeEEe
Confidence 5789999999999988877733 33321 1111110 1123334455555677788888889999999999988
Q ss_pred cccccccc-----cc---hHHH-HHHHHHHhCCCEEEEeCCC-----CC----CccChHHHHHHHHHhcCCceEEeeecc
Q 027731 73 TAFRMSEV-----AE---PYIR-RRAVRHLEKGRVVIFAAGT-----GN----PFFTTDTAAALRCAEINAEVVLKATNV 134 (219)
Q Consensus 73 ~~~~~~~~-----~~---~~~~-~~~~~~l~~g~ipIv~g~~-----g~----~~~~sD~~Aa~lA~~l~Ad~liiltDV 134 (219)
++.+...+ .. ...+ +.+..+++.+.|||++|+. |. .++++|++|+.+|.+|+|++++|||||
T Consensus 101 ~~~~~~~~t~~~~~~~~v~~~~~~~l~~~l~~~~vpVi~G~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~i~tDV 180 (403)
T PRK08210 101 TGGQAGIITDDNFTNAKIIEVNPDRILEALEEGDVVVVAGFQGVTENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDV 180 (403)
T ss_pred chHHccEEccCCCCceeeehhhHHHHHHHHhcCCEEEeeCeeecCCCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECC
Confidence 76653211 11 1122 3455788999999999962 21 245899999999999999999999999
Q ss_pred CccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEecC
Q 027731 135 DGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 209 (219)
Q Consensus 135 ~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~ 209 (219)
||||++||+.+|++++|++++++|+.++ |..++|++|+++|.++++|++|+|.+++. .||+|.+.
T Consensus 181 ~GV~~~dP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~~~----------~gT~I~~~ 248 (403)
T PRK08210 181 DGIMTADPRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVEIAMQANIPLRIRSTYSDS----------PGTLITSL 248 (403)
T ss_pred CCCCcCCCCcCCCCeECCccCHHHHHHHHHCCccccCHHHHHHHHHCCCeEEEEecCCCc----------CCcEEEec
Confidence 9999999999999999999999998874 88899999999999999999999998653 49999765
No 41
>PRK00942 acetylglutamate kinase; Provisional
Probab=99.96 E-value=5.7e-28 Score=203.93 Aligned_cols=201 Identities=22% Similarity=0.284 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHHHhHH-Hhcc-----CCCCcChH---HHHHHH-HHHHHHHHHHHHHHhcCCCeeE
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIFRGAS-AAGN-----SGLDRSSA---DYIGML-ATVMNAIFLQATMESIGIPTRV 71 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~-~~~~-----~~~~~~~~---~~~~~~-~~~~~~~l~~~~l~~~gi~a~~ 71 (219)
+++++|+.+++.|.++|||||+|++.+... ..+. .|++.+.. +...+. +..+|..++ +.|+++|+++.+
T Consensus 43 ~l~~~i~~l~~~g~~vVlVhGgg~~~~~~~~~~g~~~~~~~g~~~t~~~~l~~~~~a~~G~l~~~i~-~~L~~~Gv~a~~ 121 (283)
T PRK00942 43 AFARDIVLLKQVGINPVVVHGGGPQIDELLKKLGIESEFVNGLRVTDAETMEVVEMVLAGKVNKELV-SLINKHGGKAVG 121 (283)
T ss_pred HHHHHHHHHHHCCCCEEEEeCChHHHHHHHHHCCCCcEeeCCEecCCHHHHHHHHHHHcCchHHHHH-HHHHhCCCCccc
Confidence 478999999999999999999998765432 2331 23333222 222232 246777766 799999999998
Q ss_pred ecccccccccc---------------hHHH-HHHHHHHhCCCEEEEeCC----CC-CCccChHHHHHHHHHhcCCceEEe
Q 027731 72 QTAFRMSEVAE---------------PYIR-RRAVRHLEKGRVVIFAAG----TG-NPFFTTDTAAALRCAEINAEVVLK 130 (219)
Q Consensus 72 ~~~~~~~~~~~---------------~~~~-~~~~~~l~~g~ipIv~g~----~g-~~~~~sD~~Aa~lA~~l~Ad~lii 130 (219)
+++.+...+.. ..++ +.+.++|+.|.|||+++. .+ ..++++|++|+++|..|+|++|+|
T Consensus 122 l~~~~~~~~ta~~~~~~~~~~~~g~i~~i~~~~l~~ll~~g~vpVv~~~~~~~~g~~~~l~~D~~A~~lA~~l~A~~li~ 201 (283)
T PRK00942 122 LSGKDGGLITAKKLEEDEDLGFVGEVTPVNPALLEALLEAGYIPVISPIGVGEDGETYNINADTAAGAIAAALGAEKLIL 201 (283)
T ss_pred eeeccCCEEEEEECCCCCCCccccceEEECHHHHHHHHHCCCEEEEcCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEE
Confidence 77665322110 0123 335578999999999984 22 346899999999999999999999
Q ss_pred eeccCccccCCCCCCCCCcccccccHHHHhhC-------CCCCchHHHHHHHHhCCC-cEEEEecCCCch-HHHHhcCCC
Q 027731 131 ATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQENNI-PVVVFNLNQPGN-IAKAIQGER 201 (219)
Q Consensus 131 ltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-------g~~~~k~~aa~~a~~~gi-~v~I~~g~~~~~-i~~~l~g~~ 201 (219)
+|||||||++ +++++++++++|+.++ |+|..|+++|..+.++|+ +++|+|+.+|++ |.++++++.
T Consensus 202 ~tdv~Gv~~~------~~~~i~~i~~~e~~~~~~~~~~tggm~~Kl~~a~~~~~~gv~~v~I~~g~~~~~ll~~~~~~~~ 275 (283)
T PRK00942 202 LTDVPGVLDD------KGQLISELTASEAEELIEDGVITGGMIPKVEAALDAARGGVRSVHIIDGRVPHALLLELFTDEG 275 (283)
T ss_pred EECCcccccC------CCcccccCCHHHHHHHHHcCCCCCchHHHHHHHHHHHHhCCCEEEEeCCCCCchHHHHHhcCCC
Confidence 9999999986 3689999999887653 455569999999999998 599999999999 789999999
Q ss_pred CceEEecC
Q 027731 202 VGTLIGGT 209 (219)
Q Consensus 202 ~GT~i~~~ 209 (219)
+||+|.++
T Consensus 276 ~GT~i~~~ 283 (283)
T PRK00942 276 IGTMIVPD 283 (283)
T ss_pred cceEEecC
Confidence 99999864
No 42
>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.
Probab=99.96 E-value=8.6e-28 Score=203.02 Aligned_cols=156 Identities=26% Similarity=0.307 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccc----ccc---chH---------HHHHHHHHHhC-CCEEEEeCCC
Q 027731 43 ADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS----EVA---EPY---------IRRRAVRHLEK-GRVVIFAAGT 105 (219)
Q Consensus 43 ~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~----~~~---~~~---------~~~~~~~~l~~-g~ipIv~g~~ 105 (219)
.+.+-..++++++.+++.+|++.|+++.++++++.. ++. ..| ...++.+.++. +.|||++||.
T Consensus 111 ~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~~~~~~~~~~~~~~~a~v~~~~~~~~l~~~l~~~~~v~Vv~GFi 190 (295)
T cd04259 111 RAEVLALGELMSTRLGAAYLEAQGLKVKWLDARELLTATPTLGGETMNYLSARCESEYADALLQKRLADGAQLIITQGFI 190 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcHHHheeecccccccccccccceehhhhhHHHHHHHHhcCCceeEeCCce
Confidence 455556778999999999999999999988765431 111 011 12345555654 6799999983
Q ss_pred C---------CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHH
Q 027731 106 G---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAIT 173 (219)
Q Consensus 106 g---------~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~ 173 (219)
| ..+++||++|+.+|.+++|+++++||||||||++||+.+|+++++++++++|+.++ |.+++|++|++
T Consensus 191 g~~~~G~~ttLGrggsD~tA~~lA~~l~A~~l~i~TdV~Gvyt~DP~~~~~a~~i~~ls~~ea~~l~~~Ga~v~h~~a~~ 270 (295)
T cd04259 191 ARNAHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVPGLFTANPHEVPHARLLKRLDYDEAQEIATMGAKVLHPRCIP 270 (295)
T ss_pred eeCCCCCEEEECCCChHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEeceeCHHHHHHHHHcCCcccCHHHHH
Confidence 3 24689999999999999999999999999999999999999999999999998765 88899999999
Q ss_pred HHHhCCCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731 174 LCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 207 (219)
Q Consensus 174 ~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~ 207 (219)
+|.+++||++|.|+++|+ ..||+|.
T Consensus 271 ~a~~~~ipi~i~~~~~p~---------~~GT~I~ 295 (295)
T cd04259 271 PARRANIPMVVRSTERPE---------LSGTLIT 295 (295)
T ss_pred HHHHCCCCEEEEeCCCCC---------CCCcEeC
Confidence 999999999999999987 5799984
No 43
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=99.96 E-value=5e-28 Score=203.91 Aligned_cols=201 Identities=20% Similarity=0.275 Sum_probs=151.6
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHHHhH-HHhcc-----CCCCcChH---HHHHHH-HHHHHHHHHHHHHHhcCCCeeE
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGN-----SGLDRSSA---DYIGML-ATVMNAIFLQATMESIGIPTRV 71 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~-~~~~~-----~~~~~~~~---~~~~~~-~~~~~~~l~~~~l~~~gi~a~~ 71 (219)
+++++|+.+++.|.++|||||||++.+.+ ...+. .|++.+.. +...+. +..+|..+ .+.|+++|+++++
T Consensus 34 ~~~~~i~~l~~~g~~~ViVhG~g~~~~~~l~~~g~~~~~~~g~r~t~~~~~~~~~~~~~g~ln~~l-~~~L~~~Gv~a~~ 112 (279)
T cd04250 34 SFARDIVLLKYVGINPVVVHGGGPEINEMLKKLGIESEFVNGLRVTDEETMEIVEMVLVGKVNKEI-VSLINRAGGKAVG 112 (279)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCcHHHHHHHHHCCCCCEeECCeecCCHHHHHHHHHHHcCchHHHH-HHHHHHcCCCcce
Confidence 57888998888899999999999976532 23331 23333332 222222 24688887 5799999999999
Q ss_pred eccccccccc-c-------------h------HHHH-HHHHHHhCCCEEEEeCC----CCC-CccChHHHHHHHHHhcCC
Q 027731 72 QTAFRMSEVA-E-------------P------YIRR-RAVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEINA 125 (219)
Q Consensus 72 ~~~~~~~~~~-~-------------~------~~~~-~~~~~l~~g~ipIv~g~----~g~-~~~~sD~~Aa~lA~~l~A 125 (219)
+++.+...+. + . .++. .+.++|+.|.|||+++. .+. ..+++|.+|+++|.+|+|
T Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~~~i~~ll~~g~IPVi~~~~~~~~g~~~~~~~D~~A~~lA~~l~A 192 (279)
T cd04250 113 LSGKDGNLIKAKKKDATVIEEIIDLGFVGEVTEVNPELLETLLEAGYIPVIAPVGVGEDGETYNINADTAAGAIAAALKA 192 (279)
T ss_pred eecCCCCEEEEEECcccccCCCcccCcccceEEEcHHHHHHHHHCCCeEEEcCCccCCCCcEEEeCHHHHHHHHHHHhCC
Confidence 8876532111 0 0 1223 34578999999999984 122 347999999999999999
Q ss_pred ceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC-------CCCCchHHHHHHHHhCCCc-EEEEecCCCchH-HHH
Q 027731 126 EVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQENNIP-VVVFNLNQPGNI-AKA 196 (219)
Q Consensus 126 d~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-------g~~~~k~~aa~~a~~~gi~-v~I~~g~~~~~i-~~~ 196 (219)
++|+|+|||||||++||. ++++|++++++|+.++ |+|..|+++|..+.++|++ |+|+|+.+|+++ .++
T Consensus 193 ~~li~ltdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~~~~~tGgm~~Kl~~a~~a~~~g~~~v~I~~g~~~~~ll~~~ 269 (279)
T cd04250 193 EKLILLTDVAGVLDDPND---PGSLISEISLKEAEELIADGIISGGMIPKVEACIEALEGGVKAAHIIDGRVPHSLLLEI 269 (279)
T ss_pred CEEEEEECCcccccCCCC---CccccccCCHHHHHHHHHcCCCCCchHHHHHHHHHHHHhCCCEEEEeCCCCCchHHHHH
Confidence 999999999999999883 3699999999887653 4555699999999999986 999999999975 789
Q ss_pred hcCCCCceEE
Q 027731 197 IQGERVGTLI 206 (219)
Q Consensus 197 l~g~~~GT~i 206 (219)
|+++..||+|
T Consensus 270 ~~~~~~GT~i 279 (279)
T cd04250 270 FTDEGIGTMI 279 (279)
T ss_pred hcCCCCccCC
Confidence 9998899975
No 44
>PLN02418 delta-1-pyrroline-5-carboxylate synthase
Probab=99.96 E-value=7.8e-28 Score=224.62 Aligned_cols=206 Identities=21% Similarity=0.316 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCC--------C--CcChHHH--HHHHHHHHHHHHHHHHHHhcCCCe
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSG--------L--DRSSADY--IGMLATVMNAIFLQATMESIGIPT 69 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~--------~--~~~~~~~--~~~~~~~~~~~l~~~~l~~~gi~a 69 (219)
+++++|+++++.|+++|+|+ +|+.+.+...++... + +....+. ..+.+......++..+|+++|+++
T Consensus 41 ~l~~~i~~l~~~g~~vvlVs-Sga~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~qa~aa~Gq~~l~~~~~~~f~~~g~~~ 119 (718)
T PLN02418 41 ALCEQIKELNSDGYEVILVS-SGAVGVGRQRLRYRRLVNSSFADLQKPQMELDGKACAAVGQSELMALYDTLFSQLDVTA 119 (718)
T ss_pred HHHHHHHHHHHCCCEEEEEe-cchHHHHHHHHhhhhhhhcccccCCCCcchHHHHHHHHhhHHHHHHHHHHHHHHcCCeE
Confidence 58999999999999999998 576665555444211 1 1222332 122345566677889999999987
Q ss_pred eEecccccccccch--HHH--HHHHHHHhCCCEEEEeCCCC-----C-------CccChHHHHHHHHHhcCCceEEeeec
Q 027731 70 RVQTAFRMSEVAEP--YIR--RRAVRHLEKGRVVIFAAGTG-----N-------PFFTTDTAAALRCAEINAEVVLKATN 133 (219)
Q Consensus 70 ~~~~~~~~~~~~~~--~~~--~~~~~~l~~g~ipIv~g~~g-----~-------~~~~sD~~Aa~lA~~l~Ad~liiltD 133 (219)
. |...+..++.++ +.+ ..+..+|+.|.|||+++++. . .+++||++|+++|.+++||+|+|+||
T Consensus 120 ~-qillT~~~~~~~~~~~~~~~~l~~ll~~g~iPVv~~nd~v~~~~~~~~~~~~~~~d~D~~A~~lA~~l~Ad~li~~Td 198 (718)
T PLN02418 120 S-QLLVTDSDFRDPDFRKQLSETVESLLDLRVIPIFNENDAVSTRRAPYEDSSGIFWDNDSLAALLALELKADLLILLSD 198 (718)
T ss_pred E-EEEecHhHhcchhHhHhHHHHHHHHHHCCCEEEEcCCCCccccccccccccCeecCcHHHHHHHHHHcCCCEEEEeec
Confidence 6 445555555432 222 33557899999999998521 1 34689999999999999999999999
Q ss_pred cCccccCCCCCCCCCcccccccHHHHh----h-------CCCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCC
Q 027731 134 VDGVYDDNPRRNPNARLLDTLTYQEVT----S-------KDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERV 202 (219)
Q Consensus 134 V~Gv~~~dP~~~~~a~~i~~i~~~e~~----~-------~g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~ 202 (219)
|||||++||+ +|++++|++++..+.. . .|+|..|++++..+.++|++++|+||.+|+.+.++++|+..
T Consensus 199 VdGvy~~~p~-~~~a~~i~~i~~~~~~~~i~~~~~s~~~tGGM~~Kl~Aa~~a~~~Gi~v~I~~g~~~~~l~~~l~g~~~ 277 (718)
T PLN02418 199 VEGLYTGPPS-DPSSKLIHTYIKEKHQDEITFGEKSRVGRGGMTAKVKAAVNAASAGIPVVITSGYALDNIRKVLRGERV 277 (718)
T ss_pred CCeeecCCCC-CCCceEcceecccchhhhhhcccccccCCCCcHHHHHHHHHHHHCCCcEEEeCCCCcchHHHHhcCCCC
Confidence 9999999997 5899999998754321 1 14555599999999999999999999999999999999999
Q ss_pred ceEEecCC
Q 027731 203 GTLIGGTW 210 (219)
Q Consensus 203 GT~i~~~~ 210 (219)
||+|.++.
T Consensus 278 GT~i~~~~ 285 (718)
T PLN02418 278 GTLFHQDA 285 (718)
T ss_pred ceEecccc
Confidence 99998753
No 45
>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like . Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.96 E-value=2.2e-28 Score=203.75 Aligned_cols=198 Identities=23% Similarity=0.297 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHHHhHH-Hhcc-----CCCCcCh---HHHHHHHH-HHHHHHHHHHHHHhcCCCeeE
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIFRGAS-AAGN-----SGLDRSS---ADYIGMLA-TVMNAIFLQATMESIGIPTRV 71 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~-~~~~-----~~~~~~~---~~~~~~~~-~~~~~~l~~~~l~~~gi~a~~ 71 (219)
+++++|+.+++.|.++|||||+|++.+.+. ..+. .+++.+. .+.+.+.. .++|..+ .+.|+++|+++.+
T Consensus 18 ~~~~~i~~l~~~g~~~VlVhG~g~~~~~~~~~~~~~~~~~~~~r~t~~~~l~~~~~a~~g~ln~~i-~~~L~~~Gv~a~~ 96 (256)
T cd04238 18 AFADDIVLLKQVGINPVIVHGGGPEINELLKRLGIESEFVNGLRVTDKETMEIVEMVLAGKVNKEL-VSLLNRAGGKAVG 96 (256)
T ss_pred HHHHHHHHHHHCCCCEEEECCCcHHHHHHHHHCCCCCEeECCeecCCHHHHHHHHHHHcCchHHHH-HHHHHhCCCCCCC
Confidence 578899999999999999999999865432 3331 1222222 23333333 5788877 5789999999998
Q ss_pred ecccccccccc-h---------H------HH-HHHHHHHhCCCEEEEeCC----CC-CCccChHHHHHHHHHhcCCceEE
Q 027731 72 QTAFRMSEVAE-P---------Y------IR-RRAVRHLEKGRVVIFAAG----TG-NPFFTTDTAAALRCAEINAEVVL 129 (219)
Q Consensus 72 ~~~~~~~~~~~-~---------~------~~-~~~~~~l~~g~ipIv~g~----~g-~~~~~sD~~Aa~lA~~l~Ad~li 129 (219)
+++.+...+.. + | ++ +.+..+|+.|.|||+++. .+ ..++++|++|+++|..|+|++|+
T Consensus 97 l~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~~~l~~ll~~g~ipVv~~~~~~~~g~~~~~~~D~~A~~lA~~l~a~~li 176 (256)
T cd04238 97 LSGKDGGLIKAEKKEEKDIDLGFVGEVTEVNPELLETLLEAGYIPVIAPIAVDEDGETYNVNADTAAGAIAAALKAEKLI 176 (256)
T ss_pred cccccCCEEEEEECCCCCCCcccccceEEECHHHHHHHHHCCCEEEECCcEECCCCcEEEECHHHHHHHHHHHcCCCEEE
Confidence 87765322210 0 1 22 335578999999999984 12 34689999999999999999999
Q ss_pred eeeccCccccCCCCCCCCCcccccccHHHHhhC-------CCCCchHHHHHHHHhCCC-cEEEEecCCCchHHHHhcC-C
Q 027731 130 KATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQENNI-PVVVFNLNQPGNIAKAIQG-E 200 (219)
Q Consensus 130 iltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-------g~~~~k~~aa~~a~~~gi-~v~I~~g~~~~~i~~~l~g-~ 200 (219)
|+|||||||++ | ++++++++++|+.++ |+|..|+++|..+.++|+ +++|+|++.|++|.+++.+ +
T Consensus 177 ~ltdv~Gv~~~-~-----~~~i~~i~~~e~~~~~~~~~~~ggm~~Kl~~a~~~~~~g~~~v~I~~g~~~~~l~~~l~~~~ 250 (256)
T cd04238 177 LLTDVPGVLDD-P-----GSLISELTPKEAEELIEDGVISGGMIPKVEAALEALEGGVRKVHIIDGRVPHSLLLELFTDE 250 (256)
T ss_pred EEeCCccccCC-C-----CCccccCCHHHHHHHHHcCCCCCChHHHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHhcCC
Confidence 99999999987 2 689999999876543 455669999999999887 5999999999999988877 5
Q ss_pred CCceEE
Q 027731 201 RVGTLI 206 (219)
Q Consensus 201 ~~GT~i 206 (219)
..||+|
T Consensus 251 ~~GT~i 256 (256)
T cd04238 251 GIGTMI 256 (256)
T ss_pred CCCCCC
Confidence 689975
No 46
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC). This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.96 E-value=3e-28 Score=202.81 Aligned_cols=192 Identities=23% Similarity=0.327 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHHHhH-HHhcc--------CCC--CcC---hHHHHHHHHHHHHHHHHHHHHHhcCC
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGN--------SGL--DRS---SADYIGMLATVMNAIFLQATMESIGI 67 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~-~~~~~--------~~~--~~~---~~~~~~~~~~~~~~~l~~~~l~~~gi 67 (219)
+++++|+.+ |.++|||||||++.+.. ...+. .|+ +.+ +.+.+.+....+|..++ +.|+++|+
T Consensus 15 ~~~~~i~~l---g~~~VlVHGgg~~i~~~~~~~gi~~~~~~~~~G~~~Rvt~~~~l~~~~~a~~~ln~~iv-~~L~~~Gi 90 (257)
T cd04251 15 KVIDDIANF---GERLIVVHGGGNYVNEYLKRLGVEPKFVTSPSGIRSRYTDKETLEVFVMVMGLINKKIV-ARLHSLGV 90 (257)
T ss_pred HHHHHHHHc---CCCEEEECCCHHHHHHHHHHcCCCcEEEeCCCCCccccCCHHHHHHHHHHHHHHHHHHH-HHHHhCCC
Confidence 578888887 88999999999986542 23221 132 222 23344455578898876 49999999
Q ss_pred CeeEeccccccccc------------------------c-hHHH-HHHHHHHhCCCEEEEeCC----CC-CCccChHHHH
Q 027731 68 PTRVQTAFRMSEVA------------------------E-PYIR-RRAVRHLEKGRVVIFAAG----TG-NPFFTTDTAA 116 (219)
Q Consensus 68 ~a~~~~~~~~~~~~------------------------~-~~~~-~~~~~~l~~g~ipIv~g~----~g-~~~~~sD~~A 116 (219)
++.++++.+...+. + ..++ +.+..+|++|.|||+++. .| ..++++|++|
T Consensus 91 ~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~v~~v~~~~i~~ll~~g~vpVi~~~~~~~~G~~~~i~~D~~A 170 (257)
T cd04251 91 KAVGLTGLDGRLLEAKRKEIVRVNERGRKMIIRGGYTGKVEKVNSDLIEALLDAGYLPVVSPVAYSEEGEPLNVDGDRAA 170 (257)
T ss_pred CceecccccCCEEEEEEeecccccccCcccccCCcceEEEEEEcHHHHHHHHhCCCeEEEeCcEECCCCcEEecCHHHHH
Confidence 99988776532110 0 0123 345578999999999885 22 2458999999
Q ss_pred HHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC-----CCCCchHHHHHHHHhCCCc-EEEEecCCC
Q 027731 117 ALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVMDMTAITLCQENNIP-VVVFNLNQP 190 (219)
Q Consensus 117 a~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-----g~~~~k~~aa~~a~~~gi~-v~I~~g~~~ 190 (219)
+.+|.+|+|++|+|+|||||||++ ++++++++++|+.++ |+|..|++++..+.++|++ ++|++++.|
T Consensus 171 ~~lA~~L~A~~li~~tdv~Gv~~~-------~~~i~~i~~~e~~~l~~~~~ggm~~Kl~aa~~a~~~gv~~v~i~~g~~~ 243 (257)
T cd04251 171 AAIAAALKAERLILLTDVEGLYLD-------GRVIERITVSDAESLLEKAGGGMKRKLLAAAEAVEGGVREVVIGDARAD 243 (257)
T ss_pred HHHHHHcCCCEEEEEeCChhheeC-------CcccCccCHHHHHHHHhhCCCchHHHHHHHHHHHHcCCCEEEEecCCCc
Confidence 999999999999999999999973 589999999887664 6677799999999999994 999999999
Q ss_pred chHHHHhcCCCCceEE
Q 027731 191 GNIAKAIQGERVGTLI 206 (219)
Q Consensus 191 ~~i~~~l~g~~~GT~i 206 (219)
+.+.+++.|+ ||+|
T Consensus 244 ~~l~~~l~g~--gT~i 257 (257)
T cd04251 244 SPISSALNGG--GTVI 257 (257)
T ss_pred cHHHHHHcCC--CcCC
Confidence 9999999874 8875
No 47
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=99.96 E-value=3e-27 Score=210.85 Aligned_cols=153 Identities=27% Similarity=0.355 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCeeEecccccccc-----cch----HHH-HHHHHHHhCCCEEEEeCCC-----CC----Cc
Q 027731 49 LATVMNAIFLQATMESIGIPTRVQTAFRMSEV-----AEP----YIR-RRAVRHLEKGRVVIFAAGT-----GN----PF 109 (219)
Q Consensus 49 ~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~-----~~~----~~~-~~~~~~l~~g~ipIv~g~~-----g~----~~ 109 (219)
.++++|+.+++.+|+++|++++++++.+...+ .+. ..+ ..+.++++.+.|||++||. |. .+
T Consensus 111 ~GE~~s~~l~~~~l~~~Gi~a~~l~~~~~~l~t~~~~~~~~~~~~~~~~~l~~~l~~~~vpVv~G~~g~~~~g~~~~lgr 190 (441)
T TIGR00657 111 FGERLSAALLSAALEELGVKAVSLLGGEAGILTDSNFGRARVIIEILTERLEPLLEEGIIPVVAGFQGATEKGETTTLGR 190 (441)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEcCcceEEecCCCCceeecHhhhHHHHHHHHhcCCEEEEeCcEeeCCCCCEeecCC
Confidence 46789999999999999999998877664221 111 112 3455788999999999962 21 34
Q ss_pred cChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCCCcEEEEe
Q 027731 110 FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFN 186 (219)
Q Consensus 110 ~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~gi~v~I~~ 186 (219)
++||++|+.+|.+|+|++|++||||||||++||+.+|+++++++++++|+.++ |.+++|++|+.++.++++|++|.|
T Consensus 191 ggsD~~A~~lA~~l~a~~l~~~tDV~Gv~~~DP~~~~~a~~i~~is~~ea~el~~~G~~v~~~~a~~~~~~~~i~i~i~~ 270 (441)
T TIGR00657 191 GGSDYTAALLAAALKADECEIYTDVDGIYTTDPRIVPDARRIDEISYEEMLELASFGAKVLHPRTLEPAMRAKIPIVVKS 270 (441)
T ss_pred CchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCCeECCccCHHHHHHHHhcCCcccCHHHHHHHHHcCCeEEEec
Confidence 68999999999999999999999999999999999999999999999998764 788999999999999999999999
Q ss_pred cCCCchHHHHhcCCCCceEEecCC
Q 027731 187 LNQPGNIAKAIQGERVGTLIGGTW 210 (219)
Q Consensus 187 g~~~~~i~~~l~g~~~GT~i~~~~ 210 (219)
+++|+ ..||+|.+..
T Consensus 271 ~~~~~---------~~GT~I~~~~ 285 (441)
T TIGR00657 271 TFNPE---------APGTLIVAST 285 (441)
T ss_pred CCCCC---------CCceEEEeCC
Confidence 99885 4699998653
No 48
>PRK06291 aspartate kinase; Provisional
Probab=99.96 E-value=3.4e-27 Score=211.49 Aligned_cols=158 Identities=27% Similarity=0.341 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccccc-----cc--------hHHHHHHHHHHhCCCEEEEeCCC----
Q 027731 43 ADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV-----AE--------PYIRRRAVRHLEKGRVVIFAAGT---- 105 (219)
Q Consensus 43 ~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~-----~~--------~~~~~~~~~~l~~g~ipIv~g~~---- 105 (219)
.+.+...++++++.+++.+|++.|+++.++++.+.+.+ .. .++...+..+++.+.+||++||.
T Consensus 122 ~d~i~s~GE~~Sa~l~~~~L~~~Gi~a~~l~~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vpVv~Gfig~~~ 201 (465)
T PRK06291 122 RDYILSFGERLSAPILSGALRDLGIKSVALTGGEAGIITDSNFGNARPLPKTYERVKERLEPLLKEGVIPVVTGFIGETE 201 (465)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCCCCeEEEchHHCcEEecCCCCceeechhhHHHHHHHHHHHhhcCcEEEEeCcEEcCC
Confidence 34455567889999999999999999999887664211 10 12223445678899999999962
Q ss_pred -C----CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHh
Q 027731 106 -G----NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQE 177 (219)
Q Consensus 106 -g----~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~ 177 (219)
| ..+++||++|+.+|.+|+|+++++||||||||++||+.+|+++++++++++|+.++ |.+++|++|+.+|.+
T Consensus 202 ~g~~~tlgrggsD~~A~~~A~~l~a~~~~i~tdV~Gi~~~dP~~~~~a~~i~~l~~~ea~~l~~~G~~v~~~~a~~~~~~ 281 (465)
T PRK06291 202 EGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDGVMTTDPRIVPEARVIPKISYIEAMELSYFGAKVLHPRTIEPAME 281 (465)
T ss_pred CCCEEEecCCChHHHHHHHHHhcCCCEEEEEECCCCCCCCCCCCCCCCeEccccCHHHHHHHHhCCCcccCHHHHHHHHH
Confidence 2 23579999999999999999999999999999999999999999999999998775 889999999999999
Q ss_pred CCCcEEEEecCCCchHHHHhcCCCCceEEecC
Q 027731 178 NNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 209 (219)
Q Consensus 178 ~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~ 209 (219)
++||++|.|+++|+ ..||+|...
T Consensus 282 ~~i~i~i~~~~~~~---------~~gt~i~~~ 304 (465)
T PRK06291 282 KGIPVRVKNTFNPE---------FPGTLITSD 304 (465)
T ss_pred cCCcEEEecCCCCC---------CCceEEEec
Confidence 99999999999886 579999764
No 49
>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains. Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.
Probab=99.96 E-value=3.7e-27 Score=199.56 Aligned_cols=157 Identities=22% Similarity=0.316 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccccc-------chH---HHHHHHHHH-h-CCCEEEEeCCCC-----
Q 027731 44 DYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA-------EPY---IRRRAVRHL-E-KGRVVIFAAGTG----- 106 (219)
Q Consensus 44 ~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~-------~~~---~~~~~~~~l-~-~g~ipIv~g~~g----- 106 (219)
+.+-..++++++.+++.+|++.|+++.++++.+..... ..+ ..+.....+ + .+.|||++||.|
T Consensus 126 d~i~s~GE~lSa~l~a~~L~~~Gi~a~~ld~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~GFig~~~~G 205 (306)
T cd04247 126 DLVISTGEKLSCRFMAAVLRDRGVDAEYVDLSHIVDLDFSIEALDQTFYDELAQVLGEKITACENRVPVVTGFFGNVPGG 205 (306)
T ss_pred HHHhhHHHHHHHHHHHHHHHhCCCCeEEEcHHHheecCCCccccccchhHHHHHHHHHHhhccCCceEEeeccEecCCCC
Confidence 34445667899999999999999999988765542111 111 112222323 2 467999999833
Q ss_pred ----CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCC
Q 027731 107 ----NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENN 179 (219)
Q Consensus 107 ----~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~g 179 (219)
..+++||++|+.+|..|+|+++++||||||||++||+.+|++++|++++|+|+.++ |..++|++++.+|.+++
T Consensus 206 ~~ttLGRgGsD~~A~~la~~l~a~~v~i~tdVdGvyt~DP~~~~~a~~i~~is~~ea~el~~~GakVlHp~ti~pa~~~~ 285 (306)
T cd04247 206 LLSQIGRGYTDLCAALCAVGLNADELQIWKEVDGIFTADPRKVPTARLLPSITPEEAAELTYYGSEVIHPFTMEQVIKAR 285 (306)
T ss_pred CeEEeCCCchHHHHHHHHHHcCCCEEEEeecCCeeECCCCCCCCCCeEecccCHHHHHHHHhCcCcccCHHHHHHHHHcC
Confidence 24689999999999999999999999999999999999999999999999998875 88899999999999999
Q ss_pred CcEEEEecCCCchHHHHhcCCCCceEEecC
Q 027731 180 IPVVVFNLNQPGNIAKAIQGERVGTLIGGT 209 (219)
Q Consensus 180 i~v~I~~g~~~~~i~~~l~g~~~GT~i~~~ 209 (219)
||++|.|.++|+ ..||+|+++
T Consensus 286 Ipi~i~nt~~P~---------~~GT~I~~~ 306 (306)
T cd04247 286 IPIRIKNVENPR---------GEGTVIYPD 306 (306)
T ss_pred CcEEEecCCCCC---------CCCcEEcCC
Confidence 999999999987 579999764
No 50
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=99.95 E-value=2.7e-27 Score=199.13 Aligned_cols=156 Identities=24% Similarity=0.304 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccccc-chH--------HHHHHHHHHhCCCEEEEeCCCCC------
Q 027731 43 ADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA-EPY--------IRRRAVRHLEKGRVVIFAAGTGN------ 107 (219)
Q Consensus 43 ~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~-~~~--------~~~~~~~~l~~g~ipIv~g~~g~------ 107 (219)
.+.+-..++++|+.+++.+|++.|+++..+++.+.+.+. ..+ ..+++.+.++.+.|||++||.|.
T Consensus 112 ~d~i~s~GE~lSa~ll~~~L~~~Gi~a~~ld~~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~G~~ 191 (288)
T cd04245 112 LDALKARGEYLNAQLMAAYLNYQGIDARYVIPKDAGLVVTDEPGNAQILPESYQKIKKLRDSDEKLVIPGFYGYSKNGDI 191 (288)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHCCCCeEEEcHHHCceeecCCccccccchhhHHHHHHHHhCCCEEEEeCccccCCCCCE
Confidence 355556778999999999999999999988876653221 111 12445677888899999998542
Q ss_pred ---CccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCCCc
Q 027731 108 ---PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIP 181 (219)
Q Consensus 108 ---~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~gi~ 181 (219)
++++||+.|+.+|.+|+|+.+.+||||||||++||+.+|+|+.++++||+|+.++ |..++|+.|..+|.+++||
T Consensus 192 ttLgRggSD~tAal~A~~l~A~~v~i~tdVdGvytaDPr~v~~A~~i~~lsy~EA~ela~~GakVlhp~ai~~a~~~~Ip 271 (288)
T cd04245 192 KTFSRGGSDITGAILARGFQADLYENFTDVDGIYAANPRIVANPKPISEMTYREMRELSYAGFSVFHDEALIPAIEAGIP 271 (288)
T ss_pred EEcCCCchHHHHHHHHHHcCCCEEEEEeCCCceECCCCCCCCCCeEeCccCHHHHHHHHHCCCcccCHHHHHHHHHCCCc
Confidence 4689999999999999999999999999999999999999999999999999884 8899999999999999999
Q ss_pred EEEEecCCCchHHHHhcCCCCceEEe
Q 027731 182 VVVFNLNQPGNIAKAIQGERVGTLIG 207 (219)
Q Consensus 182 v~I~~g~~~~~i~~~l~g~~~GT~i~ 207 (219)
++|.|.++|+ ..||+|.
T Consensus 272 i~v~n~~~p~---------~~GT~I~ 288 (288)
T cd04245 272 INIKNTNHPE---------APGTLIV 288 (288)
T ss_pred EEEeeCCCCC---------CCCceeC
Confidence 9999999987 5799983
No 51
>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.95 E-value=2.9e-27 Score=196.55 Aligned_cols=197 Identities=19% Similarity=0.219 Sum_probs=144.5
Q ss_pred HHHHHHHHHHH-CCCeEEEEECCchHHHh-HHHhcc-----CCCCcChHH---HHHHH-HHHHHHHHHHHHHHhcCCCee
Q 027731 2 AIAREVASVTR-LGIEVAIVVGGGNIFRG-ASAAGN-----SGLDRSSAD---YIGML-ATVMNAIFLQATMESIGIPTR 70 (219)
Q Consensus 2 ~la~~i~~l~~-~g~~vviV~GgG~~~~~-~~~~~~-----~~~~~~~~~---~~~~~-~~~~~~~l~~~~l~~~gi~a~ 70 (219)
+++++|+.+++ .+.++|||||||++.+. ....+. +|++.+..+ .+.+. +..+|..+++.+ .++|++++
T Consensus 18 ~~~~~i~~~~~~~~~~iVlVhGgg~~~~~~~~~~g~~~~~~~g~rvt~~~~l~~~~~~~~~~~n~~lv~~l-~~~Gv~a~ 96 (252)
T cd04249 18 QLFSALSEYQQQHNRQLVIVHGGGCVVDELLKKLNFPSEKKNGLRVTPKEQIPYITGALAGTANKQLMAQA-IKAGLKPV 96 (252)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCCEEECCEecCCHHHHHHHHHHHcCcccHHHHHHH-HhCCCCce
Confidence 57888888864 56899999999997543 233331 344433333 33333 357888888655 58999999
Q ss_pred Eeccccccccc------------c-hHHH-HHHHHHHhCCCEEEEeCC----CC-CCccChHHHHHHHHHhcCCceEEee
Q 027731 71 VQTAFRMSEVA------------E-PYIR-RRAVRHLEKGRVVIFAAG----TG-NPFFTTDTAAALRCAEINAEVVLKA 131 (219)
Q Consensus 71 ~~~~~~~~~~~------------~-~~~~-~~~~~~l~~g~ipIv~g~----~g-~~~~~sD~~Aa~lA~~l~Ad~liil 131 (219)
++++.+...+. + ..++ +.+.++|+.|.|||+++. .+ ..++++|++|+++|..|+|+ ++|+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~~G~v~~i~~~~l~~ll~~g~ipVi~~~g~~~~g~~~~~~~D~~A~~lA~~l~A~-~i~l 175 (252)
T cd04249 97 GLSLADGGMTAVTQLDPELGAVGKATANDPSLLNDLLKAGFLPIISSIGADDQGQLMNVNADQAATAIAQLLNAD-LVLL 175 (252)
T ss_pred eeeccCCCEEEEEEcCCCCCcccceEEEcHHHHHHHHHCCCEEEECCCEECCCCCEeeecHHHHHHHHHHHcCCC-EEEE
Confidence 88776532211 0 0122 335578999999999984 22 35689999999999999999 6899
Q ss_pred eccCccccCCCCCCCCCcccccccHHHHhhC-------CCCCchHHHHHHHHhCC-CcEEEEecCCCchHHHHhcCCCCc
Q 027731 132 TNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQENN-IPVVVFNLNQPGNIAKAIQGERVG 203 (219)
Q Consensus 132 tDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-------g~~~~k~~aa~~a~~~g-i~v~I~~g~~~~~i~~~l~g~~~G 203 (219)
|||||||++|| +++++++++|+.++ |+|..|++++..+.+.+ ++++|+|++.|+.+.++|+|+..|
T Consensus 176 tdv~Gv~~~~~------~~i~~i~~~e~~~~~~~g~~~gGm~~kl~~a~~~~~~~~~~v~I~~g~~~~~l~~~l~g~~~G 249 (252)
T cd04249 176 SDVSGVLDADK------QLISELNAKQAAELIEQGVITDGMIVKVNAALDAAQSLRRGIDIASWQYPEQLTALLAGEPVG 249 (252)
T ss_pred eCCcccCCCCC------cCccccCHHHHHHHHhcCCCcCCcHHHHHHHHHHHHhCCCeEEEEeCCCccHHHHHHcCCCCC
Confidence 99999998765 68999998876653 34556888888876664 689999999999999999999999
Q ss_pred eEE
Q 027731 204 TLI 206 (219)
Q Consensus 204 T~i 206 (219)
|+|
T Consensus 250 T~I 252 (252)
T cd04249 250 TKI 252 (252)
T ss_pred cCC
Confidence 986
No 52
>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act
Probab=99.95 E-value=1e-26 Score=196.57 Aligned_cols=155 Identities=26% Similarity=0.342 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccc----ccc--h---HHHHHHHHHHhC-CCEEEEeCCCC-------
Q 027731 44 DYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSE----VAE--P---YIRRRAVRHLEK-GRVVIFAAGTG------- 106 (219)
Q Consensus 44 ~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~----~~~--~---~~~~~~~~~l~~-g~ipIv~g~~g------- 106 (219)
+.+-..++++++.+++.+|++.|+++..+++.+... ..+ + ....++.++++. +.|||++||.+
T Consensus 118 d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~~~~~~~~l~~~~~~~~~v~Vv~Gfig~~~~G~~ 197 (294)
T cd04257 118 AKVLSFGERLSARLLSALLNQQGLDAAWIDARELIVTDGGYLNAVVDIELSKERIKAWFSSNGKVIVVTGFIASNPQGET 197 (294)
T ss_pred hhheeHHHHHHHHHHHHHHHhCCCCeEEEchHHeeEecCCCCceEechHhhHHHHHHHHhcCCCEEEecCcccCCCCCCE
Confidence 333445678999999999999999999887655311 111 1 112344455555 89999999833
Q ss_pred --CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhh---CCCCCchHHHHHHHHhCCCc
Q 027731 107 --NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTS---KDLSVMDMTAITLCQENNIP 181 (219)
Q Consensus 107 --~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~---~g~~~~k~~aa~~a~~~gi~ 181 (219)
..+++||++|+.+|..++|+++++||||||||++||+.+|+++++++++|+|+.+ .|..++|+++..++.+++||
T Consensus 198 ttlGRGGSD~~A~~lA~~l~a~~l~i~tdVdGvyt~DP~~~~~A~~i~~is~~ea~~l~~~Gakv~h~~~~~~a~~~~Ip 277 (294)
T cd04257 198 TTLGRNGSDYSAAILAALLDADQVEIWTDVDGVYSADPRKVKDARLLPSLSYQEAMELSYFGAKVLHPKTIQPVAKKNIP 277 (294)
T ss_pred EECCCCchHHHHHHHHHHhCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHHHHCCCC
Confidence 2468899999999999999999999999999999999999999999999998877 48889999999999999999
Q ss_pred EEEEecCCCchHHHHhcCCCCceEEe
Q 027731 182 VVVFNLNQPGNIAKAIQGERVGTLIG 207 (219)
Q Consensus 182 v~I~~g~~~~~i~~~l~g~~~GT~i~ 207 (219)
++|.|+++|+ ..||+|.
T Consensus 278 i~i~~~~~p~---------~~GT~I~ 294 (294)
T cd04257 278 ILIKNTFNPE---------APGTLIS 294 (294)
T ss_pred EEEeeCCCCC---------CCCCEeC
Confidence 9999999987 5799984
No 53
>PRK08373 aspartate kinase; Validated
Probab=99.95 E-value=1.5e-26 Score=198.45 Aligned_cols=157 Identities=25% Similarity=0.396 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccc----cccchH-------HH-HHHHHHHhCCCEEEEeCCCCC---
Q 027731 43 ADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS----EVAEPY-------IR-RRAVRHLEKGRVVIFAAGTGN--- 107 (219)
Q Consensus 43 ~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~----~~~~~~-------~~-~~~~~~l~~g~ipIv~g~~g~--- 107 (219)
.|.+.+.++++++.+++.+|+++|+++.++++++.. .+.+.. .+ +.+.++++.|.|||++||.+.
T Consensus 102 ~D~ils~GE~lSa~lla~~L~~~Gi~a~~l~~~~~i~t~~~~~~a~i~~~~s~~~~~~l~~~l~~g~VpVv~Gf~g~~~G 181 (341)
T PRK08373 102 RDYILSFGERLSAVLFAEALENEGIKGKVVDPWEILEAKGSFGNAFIDIKKSKRNVKILYELLERGRVPVVPGFIGNLNG 181 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCceEEEeHHHheeecCCccceeechhhhhhhHHHHHHHHhCCcEEEEeCCccCCCC
Confidence 466677888999999999999999999988765431 111111 11 334567899999999997432
Q ss_pred -----CccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCC
Q 027731 108 -----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENN 179 (219)
Q Consensus 108 -----~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~g 179 (219)
.+++||++|+.+|..|+|++++|||||||||++||+.+|+++++++++|+|+.++ |..++++.|..++.+ +
T Consensus 182 ~~ttLGRGGSD~tA~~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~isy~Ea~ela~~Gakvlhp~ai~~a~~-~ 260 (341)
T PRK08373 182 FRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPKLVPSARLIPYLSYDEALIAAKLGMKALHWKAIEPVKG-K 260 (341)
T ss_pred eEEEcCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEcccCCHHHHHHHHHCcChhhhHHHHHHHHc-C
Confidence 3468999999999999999999999999999999999999999999999998874 777889999999999 9
Q ss_pred CcEEEEecCCCchHHHHhcCCCCceEEecCC
Q 027731 180 IPVVVFNLNQPGNIAKAIQGERVGTLIGGTW 210 (219)
Q Consensus 180 i~v~I~~g~~~~~i~~~l~g~~~GT~i~~~~ 210 (219)
+|++|.|.++|+ .||+|....
T Consensus 261 Ipi~v~~t~~~~----------~GT~I~~~~ 281 (341)
T PRK08373 261 IPIIFGRTRDWR----------MGTLVSNES 281 (341)
T ss_pred CcEEEecCCCCC----------CCcEEecCC
Confidence 999999988763 599997643
No 54
>PRK12353 putative amino acid kinase; Reviewed
Probab=99.95 E-value=7.9e-27 Score=198.85 Aligned_cols=200 Identities=22% Similarity=0.259 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchH-HHhHHHhcc---CC--CCcChHHH-----HHHHHHHHHHHHHHHHHHhcCCCee
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNI-FRGASAAGN---SG--LDRSSADY-----IGMLATVMNAIFLQATMESIGIPTR 70 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~-~~~~~~~~~---~~--~~~~~~~~-----~~~~~~~~~~~l~~~~l~~~gi~a~ 70 (219)
+++++|+++++.|+++|||||||++ ++.+..... ++ ....+.+. .++++..++. .+...|..+|+...
T Consensus 30 ~la~~Ia~l~~~G~~vvlV~Gg~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~a~~qg~l~~~l~~-~~~~~l~~~~~~~~ 108 (314)
T PRK12353 30 KTAKSLVDLIEEGHEVVITHGNGPQVGNILLAQEAAASEKNKVPAMPLDVCGAMSQGYIGYHLQN-ALRNELLKRGIDKP 108 (314)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCchHhCHHHhcCccccccCCCCCCchhHHHHHHHhHHHHHHHHH-HHHHHHHhcCCCcc
Confidence 5899999999999999999998875 443222111 10 01111111 2234444443 34567888877221
Q ss_pred -----Eeccccccc--ccc-------------------------------hH------------HHHH-HHHHHhCCCEE
Q 027731 71 -----VQTAFRMSE--VAE-------------------------------PY------------IRRR-AVRHLEKGRVV 99 (219)
Q Consensus 71 -----~~~~~~~~~--~~~-------------------------------~~------------~~~~-~~~~l~~g~ip 99 (219)
.+...+..+ |.. .+ ++.+ +..+|+.|.||
T Consensus 109 ~~~~v~q~ll~~~d~~f~~~~~p~g~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~v~sp~p~~~v~~~~i~~lL~~g~Ip 188 (314)
T PRK12353 109 VATVVTQVVVDANDPAFKNPTKPIGPFYTEEEAEKLAKEKGYTFKEDAGRGYRRVVPSPKPVDIVEIEAIKTLVDAGQVV 188 (314)
T ss_pred cceEEEEEEEcCCcccccCCCccccccccHHHHHHhhhhcCceeeecCCceeEeccCCCCccccccHHHHHHHHHCCCEE
Confidence 122222221 100 01 1233 34679999999
Q ss_pred EEeCCCCC-------------CccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC----
Q 027731 100 IFAAGTGN-------------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---- 162 (219)
Q Consensus 100 Iv~g~~g~-------------~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---- 162 (219)
|++|..+. .++|+|++|+++|.+|+||+|+++|||||||+++| +|++++|+++++.++.++
T Consensus 189 V~~g~gg~Pi~~~~~~~~~~~~~~d~D~lAa~lA~~l~Ad~Li~lTdvdGVy~~~~--~~~a~~i~~i~~~e~~~~~~~~ 266 (314)
T PRK12353 189 IAAGGGGIPVIREGGGLKGVEAVIDKDFASAKLAELVDADLLIILTAVDKVYINFG--KPNQKKLDEVTVSEAEKYIEEG 266 (314)
T ss_pred EEcCCCCCCEEEeCCceeeeeEecCHHHHHHHHHHHhCCCEEEEEeCCccccCCCC--CCCCeECcCcCHHHHHHHHhcC
Confidence 99964221 14788999999999999999999999999999766 478999999998876542
Q ss_pred ----CCCCchHHHHHHHH--hCCCcEEEEecCCCchHHHHhcCCCCceEEec
Q 027731 163 ----DLSVMDMTAITLCQ--ENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 208 (219)
Q Consensus 163 ----g~~~~k~~aa~~a~--~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~ 208 (219)
|+|..|+++|..+. +.|++++|++ ++.+.++++|+ .||+|.+
T Consensus 267 ~~~tGGM~~Kl~aA~~a~~~~~g~~v~I~~---~~~i~~~l~g~-~GT~i~~ 314 (314)
T PRK12353 267 QFAPGSMLPKVEAAISFVESRPGRKAIITS---LEKAKEALEGK-AGTVIVK 314 (314)
T ss_pred CcCCCCcHHHHHHHHHHHHHcCCCEEEECC---chHHHHHhCCC-CCeEecC
Confidence 34556999998877 6788999997 78888999998 8999964
No 55
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=99.95 E-value=1.4e-26 Score=195.36 Aligned_cols=199 Identities=28% Similarity=0.397 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHCCCeEEEEECCch----HHHhHHHhc----cCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEec
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGN----IFRGASAAG----NSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQT 73 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~ 73 (219)
..|++|+++.+.||+++||||+|+ +.++..... ...++.-..+..++++.+++.. +.+.|.+.|++....+
T Consensus 29 ~~a~~i~~l~~~g~~vvi~hGnGPqvG~i~~~~~~~~~~~~~~pld~~~a~~~G~ig~~~~~a-l~~~l~~~~~~~~v~t 107 (308)
T cd04235 29 IAAKALADLIKNGHEVVITHGNGPQVGNLLLQNEAAAEKVPAYPLDVCGAMSQGMIGYMLQQA-LDNELPKRGIDKPVVT 107 (308)
T ss_pred HHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHHhccccCCCCCcchhcchhhHHHHHHHHHH-HHHHHHHcCCCCceEE
Confidence 578999999999999999999994 444333221 1345555567788898888544 5678888887654333
Q ss_pred cc-----cccc--ccch-------H------------------------------------HHHHHH-HHHhCCCEEEEe
Q 027731 74 AF-----RMSE--VAEP-------Y------------------------------------IRRRAV-RHLEKGRVVIFA 102 (219)
Q Consensus 74 ~~-----~~~~--~~~~-------~------------------------------------~~~~~~-~~l~~g~ipIv~ 102 (219)
.. +..| |.+| | ++.+.+ .+|++|+|||++
T Consensus 108 ~~t~~~V~~~dpaf~~ptKpiG~~y~~~~a~~~~~~~g~~~~~d~~~g~rrvV~SP~P~~iv~~~~I~~Ll~~g~IpI~~ 187 (308)
T cd04235 108 LVTQVVVDANDPAFKNPTKPIGPFYSEEEAEELAAEKGWTFKEDAGRGYRRVVPSPKPKDIVEIEAIKTLVDNGVIVIAA 187 (308)
T ss_pred EEeEEEEcCCCccccCCCCCcCCCcCHHHHHHHHHHcCCEEEEeCCCCceeeeCCCCCccccCHHHHHHHHHCCCEEEEE
Confidence 22 2110 1000 0 112334 589999999999
Q ss_pred CCCCCC-------------ccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC-------
Q 027731 103 AGTGNP-------------FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK------- 162 (219)
Q Consensus 103 g~~g~~-------------~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~------- 162 (219)
|..|++ ++|+|++|+++|.+++||+|+++|||||||+++| .|++++|++++++|+.++
T Consensus 188 GggGiPv~~~~~~~~gveaVid~D~~AallA~~l~Ad~LiilTdVdGVy~~~~--~pda~~i~~Is~~e~~~l~~~g~~~ 265 (308)
T cd04235 188 GGGGIPVVREGGGLKGVEAVIDKDLASALLAEEINADLLVILTDVDNVYINFG--KPNQKALEQVTVEELEKYIEEGQFA 265 (308)
T ss_pred CCCccCEEEcCCceeeeeeccCccHHHHHHHHHcCCCEEEEEecCCeEECCCC--CCCCeEcCCcCHHHHHHHHhcCccc
Confidence 753332 3677999999999999999999999999999654 478999999999887643
Q ss_pred -CCCCchHHHHHHHHhC-CCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731 163 -DLSVMDMTAITLCQEN-NIPVVVFNLNQPGNIAKAIQGERVGTLIG 207 (219)
Q Consensus 163 -g~~~~k~~aa~~a~~~-gi~v~I~~g~~~~~i~~~l~g~~~GT~i~ 207 (219)
|+|..|++++..+.+. +.+++|++ ++.+.+++.|+ .||+|.
T Consensus 266 tGGM~pKv~aA~~~a~~gg~~v~I~~---~~~i~~aL~G~-~GT~I~ 308 (308)
T cd04235 266 PGSMGPKVEAAIRFVESGGKKAIITS---LENAEAALEGK-AGTVIV 308 (308)
T ss_pred cCCcHHHHHHHHHHHHhCCCeEEECC---HHHHHHHHCCC-CCeEEC
Confidence 4566699999776665 46788876 67888999998 799983
No 56
>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-
Probab=99.95 E-value=2.3e-26 Score=194.31 Aligned_cols=155 Identities=28% Similarity=0.382 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccc----ccch---HH--HHHHHHHHhC-CCEEEEeCCCC-----C-
Q 027731 44 DYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSE----VAEP---YI--RRRAVRHLEK-GRVVIFAAGTG-----N- 107 (219)
Q Consensus 44 ~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~----~~~~---~~--~~~~~~~l~~-g~ipIv~g~~g-----~- 107 (219)
+.+-..++++++.+++.+|++.|+++..+++.+... ..+. +. ...+..+++. +.|||++||.+ .
T Consensus 117 d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~~~~~~~~s~~~~~~~~~~~~~v~Vv~Gfig~~~~G~~ 196 (293)
T cd04243 117 AEVLSFGELLSSRLMSAYLQEQGLPAAWLDARELLLTDDGFLNAVVDLKLSKERLAQLLAEHGKVVVTQGFIASNEDGET 196 (293)
T ss_pred hHheeHHHHHHHHHHHHHHHhCCCCcEEEcHHHeEEecCCCCcchhhhHHHHHHHHHHHhcCCCEEEecCccccCCCCCE
Confidence 334446778999999999999999999887654311 1111 11 2234456665 89999999842 2
Q ss_pred ---CccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhh---CCCCCchHHHHHHHHhCCCc
Q 027731 108 ---PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTS---KDLSVMDMTAITLCQENNIP 181 (219)
Q Consensus 108 ---~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~---~g~~~~k~~aa~~a~~~gi~ 181 (219)
.+++||++|+.+|..++|+++++||||||||++||+.+|+++++++++++|+.+ .|..++|+.+..+|.+++||
T Consensus 197 ttLGRggsD~~A~~~a~~l~a~~~~i~tdvdGiyt~dP~~~~~a~~i~~ls~~ea~~l~~~Gakvl~p~ai~~a~~~~i~ 276 (293)
T cd04243 197 TTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYTADPRKVPDARLLKELSYDEAMELAYFGAKVLHPRTIQPAIRKNIP 276 (293)
T ss_pred EEeCCCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHHHHCCCc
Confidence 357899999999999999999999999999999999999999999999999887 48889999999999999999
Q ss_pred EEEEecCCCchHHHHhcCCCCceEEe
Q 027731 182 VVVFNLNQPGNIAKAIQGERVGTLIG 207 (219)
Q Consensus 182 v~I~~g~~~~~i~~~l~g~~~GT~i~ 207 (219)
++|.|+++|+ ..||+|.
T Consensus 277 i~i~~~~~p~---------~~GT~I~ 293 (293)
T cd04243 277 IFIKNTFNPE---------APGTLIS 293 (293)
T ss_pred EEEecCCCCC---------CCCCEeC
Confidence 9999999987 5799984
No 57
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=99.94 E-value=1.3e-25 Score=190.39 Aligned_cols=198 Identities=22% Similarity=0.320 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhcc----CCCCcChHHH-----HHHHHHHHHHHHHHHHHHhcCCCe---
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGN----SGLDRSSADY-----IGMLATVMNAIFLQATMESIGIPT--- 69 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~----~~~~~~~~~~-----~~~~~~~~~~~l~~~~l~~~gi~a--- 69 (219)
++|++|++|+++||++|||||+|+.... ..++. ...+..+++. .++++.+++. .+.+.|.++|++.
T Consensus 30 ~~a~~ia~l~~~g~~vviv~gngpqvG~-~~l~~~~~~~~~~~~p~~~~~A~~qg~lg~~~~~-~l~~~l~~~g~~~~v~ 107 (310)
T TIGR00746 30 QTAPQIAKLIKRGYELVITHGNGPQVGN-LLLQNQAADSEVPAMPLDVLGAMSQGMIGYMLQQ-ALNNELPKRGMEKPVA 107 (310)
T ss_pred HHHHHHHHHHHCCCEEEEEECChHHHHH-HHhccccccccCCCCcchHHHHhhHHHHHHHHHH-HHHHHHHhcCCCccce
Confidence 5799999999999999999998885433 22321 0111122222 2234444432 2345566788543
Q ss_pred --eEeccccccc--ccch-------H------------------------------------HHHH-HHHHHhCCC----
Q 027731 70 --RVQTAFRMSE--VAEP-------Y------------------------------------IRRR-AVRHLEKGR---- 97 (219)
Q Consensus 70 --~~~~~~~~~~--~~~~-------~------------------------------------~~~~-~~~~l~~g~---- 97 (219)
+.|...+..| |.+| | ++.+ +..+|+.|.
T Consensus 108 ~~vtqv~v~~~D~af~~p~k~ig~~y~~~~a~~~~~~~~~~~~~d~~~~~rrvv~sp~p~~iv~~~~I~~LL~~G~iVI~ 187 (310)
T TIGR00746 108 TVLTQTIVDPKDPAFQNPTKPIGPFYTEEEAKRLAAEKGWIVKEDAGRGWRRVVPSPRPKDIVEAETIKTLVENGVIVIS 187 (310)
T ss_pred EEEEEEEECCCcccccCCCCcCCCCcCHHHHHHHHHHcCCeEeecCCCcceEeecCCCchhhccHHHHHHHHHCCCEEEe
Confidence 2344444333 3211 0 1122 346899998
Q ss_pred -----EEEEeCCCC----CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC------
Q 027731 98 -----VVIFAAGTG----NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK------ 162 (219)
Q Consensus 98 -----ipIv~g~~g----~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~------ 162 (219)
+||+++++. ..++|+|++|+.+|.+++||+|+|+|||||||+++ .+|+++++++++.+|+.++
T Consensus 188 ~ggggiPvi~e~~~~~g~e~~id~D~lAa~lA~~l~AD~LIiLTDVdGVy~~~--~~p~a~~i~~it~~e~~~~~~~g~~ 265 (310)
T TIGR00746 188 SGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVILTDVDAVYINY--GKPDEKALREVTVEELEDYYKAGHF 265 (310)
T ss_pred CCCCCcCEEecCCeEEeeEecCCHHHHHHHHHHHhCCCEEEEEeCCCceeCCC--CCCCCcCCcCcCHHHHHHHHhcCCc
Confidence 444443221 12579999999999999999999999999999964 3578899999999887643
Q ss_pred --CCCCchHHHHHHHHhC-CCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731 163 --DLSVMDMTAITLCQEN-NIPVVVFNLNQPGNIAKAIQGERVGTLIG 207 (219)
Q Consensus 163 --g~~~~k~~aa~~a~~~-gi~v~I~~g~~~~~i~~~l~g~~~GT~i~ 207 (219)
|+|..|+++|..+.+. +.+++|++ ++.+.++++|+ .||+|.
T Consensus 266 ~tGgM~~Kl~AA~~~~~~g~~~v~I~~---~~~i~~~l~G~-~GT~I~ 309 (310)
T TIGR00746 266 AAGSMGPKVEAAIEFVESGGKRAIITS---LENAVEALEGK-AGTRVT 309 (310)
T ss_pred CCCCcHHHHHHHHHHHHhCCCeEEEec---hHHHHHHHCCC-CCcEEe
Confidence 4455699999666665 56899987 67899999999 899996
No 58
>PRK09084 aspartate kinase III; Validated
Probab=99.94 E-value=7.9e-26 Score=201.55 Aligned_cols=157 Identities=23% Similarity=0.317 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccc----cccc--h---HHH----HHHHHHHhCCCEEEEeCCCC---
Q 027731 43 ADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS----EVAE--P---YIR----RRAVRHLEKGRVVIFAAGTG--- 106 (219)
Q Consensus 43 ~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~----~~~~--~---~~~----~~~~~~l~~g~ipIv~g~~g--- 106 (219)
.+.+-..++++++.+++.+|++.|+++.++++.+.. .+.+ + ... ..+.++++.+ +||++||.|
T Consensus 109 ~d~i~s~GE~lSa~l~~~~L~~~Gi~a~~l~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~Vv~Gf~g~~~ 187 (448)
T PRK09084 109 TDELVSHGELMSTLLFVELLRERGVQAEWFDVRKVMRTDDRFGRAEPDVAALAELAQEQLLPLLAEG-VVVTQGFIGSDE 187 (448)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhCCCCcEEEchHHeEEecCCCCcccccHHHHHHHHHHHHHHhhcCC-cEEecCeeecCC
Confidence 455555778999999999999999999988765431 1111 1 111 2233456777 999999733
Q ss_pred ------CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHh
Q 027731 107 ------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQE 177 (219)
Q Consensus 107 ------~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~ 177 (219)
..+++||++|+.+|..|+|+++++||||||||++||+.+|+|+++++++|+|+.++ |..++|+.+..++.+
T Consensus 188 ~G~~ttLgRggSD~~a~~~a~~l~a~~~~i~tdv~Gi~t~dP~~~~~a~~i~~is~~ea~ela~~Ga~vlh~~~~~~~~~ 267 (448)
T PRK09084 188 KGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTTDPRIVPAAKRIDEISFEEAAEMATFGAKVLHPATLLPAVR 267 (448)
T ss_pred CCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEcccCCHHHHHHHHhCCCcccCHHHHHHHHH
Confidence 24689999999999999999999999999999999999999999999999998875 888999999999999
Q ss_pred CCCcEEEEecCCCchHHHHhcCCCCceEEecC
Q 027731 178 NNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 209 (219)
Q Consensus 178 ~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~ 209 (219)
+++|++|.|+++|+ ..||+|...
T Consensus 268 ~~i~i~i~~~~~~~---------~~GT~I~~~ 290 (448)
T PRK09084 268 SNIPVFVGSSKDPE---------AGGTWICND 290 (448)
T ss_pred cCCcEEEEeCCCCC---------CCceEEecC
Confidence 99999999999886 579999764
No 59
>PRK09034 aspartate kinase; Reviewed
Probab=99.94 E-value=2.3e-25 Score=199.03 Aligned_cols=159 Identities=23% Similarity=0.292 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccccc-chH--------HHHHHHHHHhCCCEEEEeCCCC-------
Q 027731 43 ADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA-EPY--------IRRRAVRHLEKGRVVIFAAGTG------- 106 (219)
Q Consensus 43 ~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~-~~~--------~~~~~~~~l~~g~ipIv~g~~g------- 106 (219)
.+.+-..++++++.+++.+|++.|+++.++++++.+.+. ..+ ...++...+..+.|||++||.|
T Consensus 112 ~d~l~s~GE~~S~~l~a~~L~~~g~~a~~~~~~~~~~~t~~~~~~a~i~~~~~~~~~~~~~~~~v~Vv~GFig~~~~g~~ 191 (454)
T PRK09034 112 LDAFKARGEDLNAKLIAAYLNYEGIPARYVDPKEAGIIVTDEPGNAQVLPESYDNLKKLRDRDEKLVIPGFFGVTKDGQI 191 (454)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcEEEchHHceEEecCCcCceeEcHhhHHHHHHHHhcCCEEEecCccccCCCCCE
Confidence 355556778999999999999999999988876653221 111 1123334555678999999833
Q ss_pred --CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCCCc
Q 027731 107 --NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIP 181 (219)
Q Consensus 107 --~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~gi~ 181 (219)
..+++||+.|+.+|.+|+|+++.+||||||||++||+.+|+|++++++||+|+.++ |..++|++|..+|.+++||
T Consensus 192 ttlgRggSD~tA~~la~~l~A~~~~i~tdV~Gi~taDPr~v~~A~~l~~lsy~Ea~ela~~Gakvlhp~ai~~a~~~~Ip 271 (454)
T PRK09034 192 VTFSRGGSDITGAILARGVKADLYENFTDVDGIYAANPRIVKNPKSIKEITYREMRELSYAGFSVFHDEALIPAYRGGIP 271 (454)
T ss_pred EecCCCcHHHHHHHHHHHcCCCEEEEEecCCccCcCCCCCCCCCeECCccCHHHHHHHHhCCcccCCHHHHHHHHHcCCC
Confidence 24689999999999999999999999999999999999999999999999998874 8999999999999999999
Q ss_pred EEEEecCCCchHHHHhcCCCCceEEecCC
Q 027731 182 VVVFNLNQPGNIAKAIQGERVGTLIGGTW 210 (219)
Q Consensus 182 v~I~~g~~~~~i~~~l~g~~~GT~i~~~~ 210 (219)
++|.|.++|+ ..||+|..+.
T Consensus 272 i~v~~~~~p~---------~~GT~I~~~~ 291 (454)
T PRK09034 272 INIKNTNNPE---------DPGTLIVPDR 291 (454)
T ss_pred EEEEcCCCCC---------CCccEEEecc
Confidence 9999999885 5799997643
No 60
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.
Probab=99.94 E-value=1e-25 Score=189.91 Aligned_cols=158 Identities=24% Similarity=0.333 Sum_probs=130.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccc----ccc--ch---HHHHH---HHHHHhCCCEEEEeCCCC--
Q 027731 41 SSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS----EVA--EP---YIRRR---AVRHLEKGRVVIFAAGTG-- 106 (219)
Q Consensus 41 ~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~----~~~--~~---~~~~~---~~~~l~~g~ipIv~g~~g-- 106 (219)
+..+.+.+.++++|+.+++.+|++.|+++.++++.+.. ++. ++ ....+ .++.+..+.|||++||.|
T Consensus 111 ~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~ 190 (292)
T cd04258 111 ASRDELLSFGERMSSLLFSEALREQGVPAEWFDVRTVLRTDSRFGRAAPDLNALAELAAKLLKPLLAGTVVVTQGFIGST 190 (292)
T ss_pred HhHhHhhhHHHHHHHHHHHHHHHhCCCCeEEEchHHeEEecCCCccccccHHHHHHHHHHHHHHhhcCCEEEECCccccC
Confidence 34566777889999999999999999999988775541 111 11 12222 223345678999999843
Q ss_pred -------CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHH
Q 027731 107 -------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQ 176 (219)
Q Consensus 107 -------~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~ 176 (219)
..+++||++|+.+|..++|+++++||||||||++||+.+|+++++++++|+|+.++ |..++|+.+..++.
T Consensus 191 ~~G~~ttLGrggsD~~a~~~a~~l~a~~~~i~tdv~Gv~~~dP~~~~~a~~i~~isy~Ea~ela~~Gakvlhp~a~~~~~ 270 (292)
T cd04258 191 EKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTTDPRICPAARAIKEISFAEAAEMATFGAKVLHPATLLPAI 270 (292)
T ss_pred CCCCEEecCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEeceeCHHHHHHHHHCCCcccCHHHHHHHH
Confidence 24689999999999999999999999999999999999999999999999998874 88899999999999
Q ss_pred hCCCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731 177 ENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 207 (219)
Q Consensus 177 ~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~ 207 (219)
+++||++|.|.++|+ ..||+|+
T Consensus 271 ~~~ipi~i~~~~~p~---------~~GT~I~ 292 (292)
T cd04258 271 RKNIPVFVGSSKDPE---------AGGTLIT 292 (292)
T ss_pred HcCCcEEEEeCCCCC---------CCCceeC
Confidence 999999999999987 5799984
No 61
>PRK05925 aspartate kinase; Provisional
Probab=99.94 E-value=2.7e-25 Score=197.04 Aligned_cols=158 Identities=19% Similarity=0.213 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccccc----cc-----hHHHHHHHH-HHhCCCEEEEeCCCC------
Q 027731 43 ADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV----AE-----PYIRRRAVR-HLEKGRVVIFAAGTG------ 106 (219)
Q Consensus 43 ~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~----~~-----~~~~~~~~~-~l~~g~ipIv~g~~g------ 106 (219)
.+.+-..++++++.+++.+|++.|+++.++++++.... .+ ....+.+.+ .++.+.|||++||.|
T Consensus 102 ~d~i~s~GE~~Sa~l~a~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~~~v~Vv~GF~g~~~~G~ 181 (440)
T PRK05925 102 QARILAIGEDISASLICAYCCTYVLPLEFLEARQVILTDDQYLRAVPDLALMQTAWHELALQEDAIYIMQGFIGANSSGK 181 (440)
T ss_pred hhhheehhHHHHHHHHHHHHHhCCCCeEEEcHHHhEeecCCccccccCHHHHHHHHHHhhccCCcEEEecCcceeCCCCC
Confidence 34455567899999999999999999998877654211 11 112222333 345678999999833
Q ss_pred ---CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCCC
Q 027731 107 ---NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNI 180 (219)
Q Consensus 107 ---~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~gi 180 (219)
..+++||++|+++|.+++||.+++||||||||++||+.+|++++|++++|+|+.++ |...+++.+.++|.++|+
T Consensus 182 ~ttLgrGgsD~~AallA~~l~Ad~~~i~TdVdGvytaDP~~~~~A~~i~~is~~ea~ela~~Ga~vl~~~~~~~a~~~~I 261 (440)
T PRK05925 182 TTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIKDAQLIPELSFEEMQNLASFGAKVLHPPMLKPCVRAGI 261 (440)
T ss_pred EEEeccCcHHHHHHHHHHHcCCCEEEEEEcCCccCCCCcCCCCCCeEeeEECHHHHHHHHhCCCCcCCHHHHHHHHHCCC
Confidence 25799999999999999999999999999999999999999999999999998765 778899999999999999
Q ss_pred cEEEEecCCCchHHHHhcCCCCceEEecC
Q 027731 181 PVVVFNLNQPGNIAKAIQGERVGTLIGGT 209 (219)
Q Consensus 181 ~v~I~~g~~~~~i~~~l~g~~~GT~i~~~ 209 (219)
|++|.|+++|+ ..||+|.+.
T Consensus 262 pi~I~~~~~p~---------~~GT~i~~~ 281 (440)
T PRK05925 262 PIFVTSTFDVT---------KGGTWIYAS 281 (440)
T ss_pred cEEEecCCCCC---------CCccEEecC
Confidence 99999999987 479999864
No 62
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=99.94 E-value=2e-25 Score=184.07 Aligned_cols=182 Identities=26% Similarity=0.349 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcC--------h---HHHHH-HHHHHHHH-----HHHHHHHHh
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRS--------S---ADYIG-MLATVMNA-----IFLQATMES 64 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~--------~---~~~~~-~~~~~~~~-----~l~~~~l~~ 64 (219)
+++++|+.+.+.|+++|||||+|++.+..... +++... . ..... .+...+|. .++ ..+..
T Consensus 21 ~~~~~i~~l~~~g~~vvvV~g~g~~~~~~~~~--~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~~~~~~i~-~~~~~ 97 (242)
T PF00696_consen 21 ELADDIALLSQLGIKVVVVHGGGSFTDELLEK--YGIEPKFVDGSRVTDIETGLIITMAAAAELNRDALLDEIV-SAGER 97 (242)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHH--CTHTTSEETHHCHBHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEECChhhcCchHHh--ccCCcccchhhhhhhhhhhHHHHHHHhhccccchhHHHHH-Hhhhh
Confidence 68899999999999999999999987754433 222221 1 11111 12233444 444 56888
Q ss_pred cCCCeeEecccccccccc-----hHHHHHHHHHHhCCCEEEEeCC-----CCC----CccChHHHHHHHHHhcCCceEEe
Q 027731 65 IGIPTRVQTAFRMSEVAE-----PYIRRRAVRHLEKGRVVIFAAG-----TGN----PFFTTDTAAALRCAEINAEVVLK 130 (219)
Q Consensus 65 ~gi~a~~~~~~~~~~~~~-----~~~~~~~~~~l~~g~ipIv~g~-----~g~----~~~~sD~~Aa~lA~~l~Ad~lii 130 (219)
++..+....+.+...... ....+.+.++|++|.|||++|+ .|. +++++|++|+++|.+|+|++|+|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ipVv~g~~~~~~~g~~~~~~~~~sD~~A~~lA~~l~A~~li~ 177 (242)
T PF00696_consen 98 LGAHAVGLSLSDGGISAAKRDAREVDKEAIRELLEQGIIPVVSGFAGIDDDGEVTTLGNVSSDYIAALLAAALGADKLIF 177 (242)
T ss_dssp CTHHEEEHHHTGGTEEEEEEESSEEHHHHHHHHHHTTSEEEEESEEEEETTSTEEEEEEETHHHHHHHHHHHTTCSEEEE
T ss_pred hhHHHHhhhhhcccchhhhhhhhhhHHHHHHHHHHCCCEEEEeCCcccCCCCCcccCCCCCHHHHHHHHHHHhCchhhhh
Confidence 888877655443221111 1112446678999999999985 232 57999999999999999999999
Q ss_pred eeccCccccCCCCCCCCCcccccccHHHHhhC--------CCCCchHHHHH-HHHhCCCcEEEEe
Q 027731 131 ATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK--------DLSVMDMTAIT-LCQENNIPVVVFN 186 (219)
Q Consensus 131 ltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~--------g~~~~k~~aa~-~a~~~gi~v~I~~ 186 (219)
+|||||||++||+.+|+++++++++++|+.++ |+|..|++++. .+.+.+++|+|+|
T Consensus 178 ~tdV~Gv~~~dP~~~~~~~~i~~l~~~e~~~l~~~~~~~~~gm~~k~~~a~~~~~~~~~~v~I~n 242 (242)
T PF00696_consen 178 LTDVDGVYTADPRIVPDARLIPELSYDEAEELASKSGDVTGGMKPKHPAALEAAEEGGIPVHIIN 242 (242)
T ss_dssp EESSSSEBSSSTTTSTTSEBESEEEHHHHHHHHHHTTSSTTTHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred hhhcCceeecCCCCCCCCeeeeEeeHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCcEEEeC
Confidence 99999999999999999999999999998874 33444665555 5555578999986
No 63
>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative. This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between.
Probab=99.94 E-value=5.2e-25 Score=187.90 Aligned_cols=153 Identities=24% Similarity=0.373 Sum_probs=120.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccc----cccc-----hH--HH-HHHHHHHhCCCEEEEeCCCCC--
Q 027731 42 SADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS----EVAE-----PY--IR-RRAVRHLEKGRVVIFAAGTGN-- 107 (219)
Q Consensus 42 ~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~----~~~~-----~~--~~-~~~~~~l~~g~ipIv~g~~g~-- 107 (219)
..+.+...++++++.+++ .|+++.++++++.. .+.+ +. .+ +.+.++++.|.|||++|+.+.
T Consensus 96 ~~d~I~s~GE~lSa~Lla-----~gi~a~~vd~~~~i~t~~~~~~a~~~~~~~~~~~~~l~~~l~~g~IpVv~Gf~~~~~ 170 (327)
T TIGR02078 96 LRDYILSLGERLSAVIFA-----EGINGKVVDPWDIFFAKGDFGNAFIDIKKSKRNAKILYEVLESGKIPVIPGFYGNLN 170 (327)
T ss_pred HHHHHHHHHHHHHHHHHH-----ccCCcEEEcHHHHhccCCcCCceeechhhhHhhHHHHHHHHhCCcEEEEeCCccCCC
Confidence 345666677788877764 37888877655431 1111 11 11 234467889999999987431
Q ss_pred ------CccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhC
Q 027731 108 ------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQEN 178 (219)
Q Consensus 108 ------~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~ 178 (219)
.+++||++|+.+|.+|+|+++++||||||||++||+.+|+++++++++|+|+.++ |..++|+.|++++.++
T Consensus 171 G~~ttlGRGgSD~~Aa~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~lsy~Ea~ela~~Gakvlhp~a~~~a~~~ 250 (327)
T TIGR02078 171 GYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIPYLSYEEIKIAAKLGMKALQWKAADLAKEY 250 (327)
T ss_pred CeEEEcCCCChHHHHHHHHHhcCCCEEEEEECCCccCCCCCCcCCCceEccccCHHHHHHHHHCCchhhHHHHHHHHHHC
Confidence 3468999999999999999999999999999999999999999999999998764 6668899999999999
Q ss_pred CCcEEEEecCCCchHHHHhcCCCCceEEecC
Q 027731 179 NIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 209 (219)
Q Consensus 179 gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~ 209 (219)
|+|++|.|.++|+ .||+|...
T Consensus 251 ~Ipi~I~~t~~~~----------~GT~I~~~ 271 (327)
T TIGR02078 251 KIPVLFGRTRDWR----------MGTLISNR 271 (327)
T ss_pred CCeEEEEeCCCcC----------CCcEEecC
Confidence 9999999998773 59999754
No 64
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.93 E-value=1.4e-24 Score=182.74 Aligned_cols=197 Identities=21% Similarity=0.315 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHHH-hHHHhcc-----CCCCcChH---HHHHHHHHHHHHHHHHHHHHhcCCCeeEe
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIFR-GASAAGN-----SGLDRSSA---DYIGMLATVMNAIFLQATMESIGIPTRVQ 72 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~~-~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~gi~a~~~ 72 (219)
+++++|+.|++.|+++|||||||+... .+.+.+. .|++.++. +...+....+|..+. +.|++ |+++.++
T Consensus 37 ~~~~~ia~l~~~g~~~ViVHGggp~i~~~~~~~gi~~~~~~G~RvT~~~~l~~~~~~~g~v~~~l~-~~l~~-~~~a~~~ 114 (280)
T cd04237 37 NIVHDIALLHSLGIRLVLVHGARPQIDQRLAERGLEPRYHRGLRITDAAALECVKEAAGAVRLEIE-ALLSM-GLPNSPM 114 (280)
T ss_pred HHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHcCCCccccCCcCcCCHHHHHHHHHHHHHHHHHHH-HHHHh-hccccCc
Confidence 578999999999999999999998544 4445442 35554433 334444456676654 56654 7776533
Q ss_pred c-----ccccc-------------cc---cc-hHHHHH-HHHHHhCCCEEEEeCC----CCCC-ccChHHHHHHHHHhcC
Q 027731 73 T-----AFRMS-------------EV---AE-PYIRRR-AVRHLEKGRVVIFAAG----TGNP-FFTTDTAAALRCAEIN 124 (219)
Q Consensus 73 ~-----~~~~~-------------~~---~~-~~~~~~-~~~~l~~g~ipIv~g~----~g~~-~~~sD~~Aa~lA~~l~ 124 (219)
+ ..+.. +. .+ ..++.+ +..+|++|++||+++. .|.. ++++|.+|+.+|.+|+
T Consensus 115 ~~~~~~~~~~~~v~~~~~~~~~~~~~g~~G~v~~v~~~~i~~lL~~g~ipv~~~~g~~~~g~~lnvnaD~~A~~LA~~L~ 194 (280)
T cd04237 115 AGARIRVVSGNFVTARPLGVVDGVDFGHTGEVRRIDADAIRRQLDQGSIVLLSPLGYSPTGEVFNLSMEDVATAVAIALK 194 (280)
T ss_pred CCCceEEecCeEEEEEECCcccCceEeeeccEEEEcHHHHHHHHHCCCEEEECCceECCCCCEEeeCHHHHHHHHHHHcC
Confidence 2 11100 00 00 012333 4578999999999983 2333 4799999999999999
Q ss_pred CceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC--------CCCCchHHHHHHHHhCCC-cEEEEecCCCchHH-
Q 027731 125 AEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK--------DLSVMDMTAITLCQENNI-PVVVFNLNQPGNIA- 194 (219)
Q Consensus 125 Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~--------g~~~~k~~aa~~a~~~gi-~v~I~~g~~~~~i~- 194 (219)
|++|+|+|||||||++ +++++++++.+|+.++ |+|..|++++..+.+.|+ +++|++++.|+.+.
T Consensus 195 a~klv~ltdv~GV~~~------~~~~i~~i~~~e~~~l~~~~~~~~ggM~~Kv~~a~~a~~~Gv~~v~I~~~~~~~~ll~ 268 (280)
T cd04237 195 ADKLIFLTDGPGLLDD------DGELIRELTAQEAEALLETGALLTNDTARLLQAAIEACRGGVPRVHLISYAEDGALLL 268 (280)
T ss_pred CCEEEEEeCCCcccCC------CCCccccCCHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHH
Confidence 9999999999999974 2589999998776642 456669999999999999 59999999999985
Q ss_pred HHhcCCCCceEE
Q 027731 195 KAIQGERVGTLI 206 (219)
Q Consensus 195 ~~l~g~~~GT~i 206 (219)
++|+.++.||+|
T Consensus 269 elft~~g~GT~i 280 (280)
T cd04237 269 ELFTRDGVGTLI 280 (280)
T ss_pred HHhcCCCCCCcC
Confidence 688888899975
No 65
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.93 E-value=1.2e-24 Score=193.57 Aligned_cols=201 Identities=18% Similarity=0.224 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHCCCeEEEEECCch-HHHhHHHhcc-----CCCCcChH---HHHHHHHHHHHHHHHHHHHHhcCCCeeE-
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGN-IFRGASAAGN-----SGLDRSSA---DYIGMLATVMNAIFLQATMESIGIPTRV- 71 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~-~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~gi~a~~- 71 (219)
+++++|+.|+..|.++|||||||+ +...+..++. .|++.++. +...+++..+|..+. +.|++. +++.+
T Consensus 36 ~~~~~i~~l~~~g~~~vlVHGgg~~i~~~~~~~g~~~~~~~G~RvT~~~~l~~~~~~~g~vn~~l~-~~l~~~-~~~~~~ 113 (429)
T TIGR01890 36 NIVADIALLHSLGVRLVLVHGARPQIERILAARGRTPHYHRGLRVTDEASLEQAQQAAGTLRLAIE-ARLSMS-LSNTPM 113 (429)
T ss_pred HHHHHHHHHHHCCCcEEEEcCCCHHHHHHHHHcCCCceeeCCcccCCHHHHHHHHHHhChHHHHHH-HHHHhc-CCcccc
Confidence 578999999999999999999998 4444555553 46665543 444556667887776 466655 43322
Q ss_pred ----ecccccc-------------cc---cch-HHHHH-HHHHHhCCCEEEEeCC----CC-CCccChHHHHHHHHHhcC
Q 027731 72 ----QTAFRMS-------------EV---AEP-YIRRR-AVRHLEKGRVVIFAAG----TG-NPFFTTDTAAALRCAEIN 124 (219)
Q Consensus 72 ----~~~~~~~-------------~~---~~~-~~~~~-~~~~l~~g~ipIv~g~----~g-~~~~~sD~~Aa~lA~~l~ 124 (219)
+++.+.. +. .+. .++.+ +..+|+.|++||+++- .| ..++|+|.+|+.+|.+|+
T Consensus 114 ~~~~l~~~dg~~~~a~~~~~~~~~~~g~~G~v~~v~~~~l~~ll~~g~ipvi~pi~~~~~g~~~nvnaD~~A~~lA~al~ 193 (429)
T TIGR01890 114 AGSRLPVVSGNFVTARPIGVIEGVDYEHTGVIRKIDTEGIRRQLDAGSIVLLSPLGHSPTGETFNLDMEDVATSVAISLK 193 (429)
T ss_pred cccCceEccceEEEEEECCCCcCccccccceEEEEcHHHHHHHHHCCCeEEECCcccCCCCCEEEeCHHHHHHHHHHHcC
Confidence 2222211 10 010 13444 4468999999999983 23 245999999999999999
Q ss_pred CceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC-----CCC-CchHHHHHHHHhCCCc-EEEEecCCCchHH-HH
Q 027731 125 AEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLS-VMDMTAITLCQENNIP-VVVFNLNQPGNIA-KA 196 (219)
Q Consensus 125 Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-----g~~-~~k~~aa~~a~~~gi~-v~I~~g~~~~~i~-~~ 196 (219)
|++|+|+|||||||++ ++++|++++.+|+.++ ++| +.|++++..|.+.|++ ++|++++.|+.+. ++
T Consensus 194 a~kli~ltdv~Gv~~~------~g~~i~~i~~~~~~~l~~~~~~~~~~~kl~~a~~a~~~gv~~v~i~~g~~~~~l~~el 267 (429)
T TIGR01890 194 ADKLIYFTLSPGISDP------DGTLAAELSPQEVESLAERLGSETTRRLLSAAVKACRGGVHRSHIVSYAEDGSLLQEL 267 (429)
T ss_pred CCEEEEEeCCCcccCC------CCCCcccCCHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCeEEEECCCCCcHHHHHH
Confidence 9999999999999974 2589999998776653 443 7799999999999985 9999999999985 56
Q ss_pred hcCCCCceEEecCC
Q 027731 197 IQGERVGTLIGGTW 210 (219)
Q Consensus 197 l~g~~~GT~i~~~~ 210 (219)
++.++.||+|+.+.
T Consensus 268 ~~~~g~GT~i~~d~ 281 (429)
T TIGR01890 268 FTRDGIGTSISKEA 281 (429)
T ss_pred hcCCCCcceEeccc
Confidence 78888999998764
No 66
>TIGR00761 argB acetylglutamate kinase. This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.
Probab=99.93 E-value=5.5e-25 Score=180.67 Aligned_cols=177 Identities=21% Similarity=0.265 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHHHh-HHHhcc-----CCCCcChH---HHHHHH-HHHHHHHHHHHHHHhcCCCeeE
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGN-----SGLDRSSA---DYIGML-ATVMNAIFLQATMESIGIPTRV 71 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~~~-~~~~~~-----~~~~~~~~---~~~~~~-~~~~~~~l~~~~l~~~gi~a~~ 71 (219)
+++++|+.+++.|.++|||||||++.+. ...++. .+++.... +.+.+. +..+|..++ +.|+++|+++++
T Consensus 17 ~~~~~i~~l~~~g~~~VlVhggg~~~~~~~~~~~~~~~~~~g~r~t~~~~~~~~~~~~~g~~~~~i~-~~L~~~G~~a~~ 95 (231)
T TIGR00761 17 AFASDIAFLRAVGIKPVIVHGGGPEINELLEALGIPPEFKNGLRVTDKETLEVVEMVLIGQVNKELV-ALLNKHGINAIG 95 (231)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHcCCCCEecCCCccCCHHHHHHHHHHHhcchHHHHH-HHHHhCCCCccc
Confidence 6899999999999999999999987553 333331 23332222 222333 447887776 589999999998
Q ss_pred eccccccccc-------------c-hHHH-HHHHHHHhCCCEEEEeCC----CC-CCccChHHHHHHHHHhcCCceEEee
Q 027731 72 QTAFRMSEVA-------------E-PYIR-RRAVRHLEKGRVVIFAAG----TG-NPFFTTDTAAALRCAEINAEVVLKA 131 (219)
Q Consensus 72 ~~~~~~~~~~-------------~-~~~~-~~~~~~l~~g~ipIv~g~----~g-~~~~~sD~~Aa~lA~~l~Ad~liil 131 (219)
+++.+...+. + ..++ +.+.++|+.|.|||++|. .+ ..++++|++|+.+|.+|+|++|+||
T Consensus 96 l~~~~~~~it~~~~~~~~~~~~g~i~~i~~~~i~~~l~~g~IPVi~~~~~~~~g~~~~l~sD~~A~~lA~~l~A~~li~l 175 (231)
T TIGR00761 96 LTGGDGQLFTARSLDKEDLGYVGEIKKVNKALLEALLKAGYIPVISSLALTAEGQALNVNADTAAGALAAALGAEKLVLL 175 (231)
T ss_pred ccCCCCCEEEEEECCCccCCcccceEEEcHHHHHHHHHCCCeEEECCCccCCCCcEEEeCHHHHHHHHHHHcCCCEEEEE
Confidence 7765431110 0 0123 345578999999999984 12 2468999999999999999999999
Q ss_pred eccCccccCCCCCCCCCcccccccHHHHhhC-------CCCCchHHHHHHHHhCCCc-EEE
Q 027731 132 TNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQENNIP-VVV 184 (219)
Q Consensus 132 tDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-------g~~~~k~~aa~~a~~~gi~-v~I 184 (219)
|||||||++|| .++|++++++|+.++ |+|..|+++|..+.+.|++ ++|
T Consensus 176 tdv~Gv~~~d~-----~~~i~~i~~~e~~~l~~~~~~tggm~~Kl~~a~~a~~~gv~~v~i 231 (231)
T TIGR00761 176 TDVPGILNGDG-----QSLISEIPLEEIEQLIEQGIITGGMIPKVNAALEALRGGVKSVHI 231 (231)
T ss_pred ECCCCeecCCC-----CeeccccCHHHHHHHHHcCCCCCchHHHHHHHHHHHHcCCCEEEC
Confidence 99999999987 368999999886653 4455599999999999997 553
No 67
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=99.93 E-value=2.5e-24 Score=178.39 Aligned_cols=195 Identities=16% Similarity=0.218 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHHHhH-HHhcc-----CCCCcCh---HHHHHHHHHHHHHHHHHHHHHhcCCCeeEe
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGN-----SGLDRSS---ADYIGMLATVMNAIFLQATMESIGIPTRVQ 72 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~-~~~~~-----~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~ 72 (219)
+++++|+.|++.|.++|||||||++.+.+ ...+. .|++.++ .+.+.+....+|..++ +.|.++|++++++
T Consensus 16 ~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~~gi~~~~~~g~RvT~~~~l~~v~~al~~vn~~iv-~~l~~~g~~a~~l 94 (248)
T cd04252 16 ELAASLSFLQHVGLYPIVVHGAGPQLNEELEAAGVEPEYVDGLRVTDPETLAVARKVFLEENLKLV-EALERNGARARPI 94 (248)
T ss_pred HHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHcCCCcEeeCCcccCCHHHHHHHHHHHHHHHHHHH-HHHHhCCCCcccc
Confidence 68899999999999999999999976543 33332 2444333 3344444457888876 5788899999876
Q ss_pred ccccc-------cccc---c-hHHHHH-HHHHHhCCCEEEEeCC----CCC-CccChHHHHHHHHHhcCCceEEeeeccC
Q 027731 73 TAFRM-------SEVA---E-PYIRRR-AVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVD 135 (219)
Q Consensus 73 ~~~~~-------~~~~---~-~~~~~~-~~~~l~~g~ipIv~g~----~g~-~~~~sD~~Aa~lA~~l~Ad~liiltDV~ 135 (219)
++... .++. + ..++.+ +..+|+.|+|||++|. .+. .++|+|.+|+.+|.+|+|++|+|+||||
T Consensus 95 ~~~~~~a~~~~~~d~g~~G~v~~i~~~~i~~~L~~g~IPVi~p~~~~~~g~~~nvnaD~~A~~lA~aL~a~kli~ltdv~ 174 (248)
T cd04252 95 TSGVFEAEYLDKDKYGLVGKITGVNKAPIEAAIRAGYLPILTSLAETPSGQLLNVNADVAAGELARVLEPLKIVFLNETG 174 (248)
T ss_pred cCceEEEEECcCccCCccCceeeECHHHHHHHHHCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCeEEEEECCc
Confidence 54211 0111 1 012333 4578999999999984 232 4589999999999999999999999999
Q ss_pred ccccCCCCCCCCCcccccccHH-HHhhC-------CCCCchHHHHHHHHhC--CC-cEEEEecCCCchHH-HHhcCCCCc
Q 027731 136 GVYDDNPRRNPNARLLDTLTYQ-EVTSK-------DLSVMDMTAITLCQEN--NI-PVVVFNLNQPGNIA-KAIQGERVG 203 (219)
Q Consensus 136 Gv~~~dP~~~~~a~~i~~i~~~-e~~~~-------g~~~~k~~aa~~a~~~--gi-~v~I~~g~~~~~i~-~~l~g~~~G 203 (219)
|||++ +++++++++.. +..++ |+|..|++++..+.+. ++ .++|++ ++.+. ++++.++.|
T Consensus 175 GV~~~------~g~~i~~i~~~~~~~~l~~~~~vtgGM~~Kl~~~~~~~~~~~~~~~v~i~~---~~~ll~elf~~~g~G 245 (248)
T cd04252 175 GLLDG------TGKKISAINLDEEYDDLMKQPWVKYGTKLKIKEIKELLDTLPRSSSVSITS---PDDLQKELFTHSGAG 245 (248)
T ss_pred ccCCC------CCCcccccCHHHHHHHHHHcCCcCCchHHHHHHHHHHHHhCCCceEEEEEC---CchHHHHHhcCCCCC
Confidence 99975 25789999863 43321 5666799998888876 44 477776 57764 677877799
Q ss_pred eEE
Q 027731 204 TLI 206 (219)
Q Consensus 204 T~i 206 (219)
|+|
T Consensus 246 T~i 248 (248)
T cd04252 246 TLI 248 (248)
T ss_pred ccC
Confidence 975
No 68
>PLN02551 aspartokinase
Probab=99.93 E-value=9.5e-25 Score=196.90 Aligned_cols=161 Identities=24% Similarity=0.301 Sum_probs=132.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccccc-----cchHH----HHHHHH----HH-hCCCEEEEeCCCC
Q 027731 41 SSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV-----AEPYI----RRRAVR----HL-EKGRVVIFAAGTG 106 (219)
Q Consensus 41 ~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~-----~~~~~----~~~~~~----~l-~~g~ipIv~g~~g 106 (219)
+..+.+-..++++++.+++.+|++.|+++.++++++.+.+ .+..+ ..++.+ .+ +.+.|||++||.|
T Consensus 163 ~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~lda~~~gi~t~~~~~~a~i~~~~~~~l~~~l~~~~~~~~~v~Vv~GFig 242 (521)
T PLN02551 163 RTRDYLVSFGERMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIDDPAVPVVTGFLG 242 (521)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHCCCCcEEechHHcceEecCCCCccchhhhhHHHHHHHHHhhhccCCeEEEEcCccc
Confidence 3446666678899999999999999999999887665321 11111 122222 22 3568999999843
Q ss_pred C----------CccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHH
Q 027731 107 N----------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAIT 173 (219)
Q Consensus 107 ~----------~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~ 173 (219)
. .+++||++|+.+|.+|+|+++.|||||||||++||+.+|+++++++++|+|+.++ |..++|+++..
T Consensus 243 ~~~~~G~~ttLGRGGSD~sA~~la~~L~A~~v~I~tDV~Gi~taDPr~v~~A~~l~~lsy~Ea~elA~~GakVlhp~ai~ 322 (521)
T PLN02551 243 KGWKTGAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPRIYPNAVPVPYLTFDEAAELAYFGAQVLHPQSMR 322 (521)
T ss_pred cCCCCCcEEecCCChHHHHHHHHHHHcCCCEEEEEeCCCceeCCCCCCCCCceEecccCHHHHHHHHhCCCcccCHHHHH
Confidence 1 3588999999999999999999999999999999999999999999999998875 89999999999
Q ss_pred HHHhCCCcEEEEecCCCchHHHHhcCCCCceEEecCC
Q 027731 174 LCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW 210 (219)
Q Consensus 174 ~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~~ 210 (219)
+|.+++||++|.|.++|+ ..||+|....
T Consensus 323 pa~~~~Ipi~vknt~~p~---------~~GT~I~~~~ 350 (521)
T PLN02551 323 PAREGDIPVRVKNSYNPT---------APGTLITKTR 350 (521)
T ss_pred HHHHCCceEEEEecCCCC---------CCCcEEeccc
Confidence 999999999999999886 5799997643
No 69
>PRK12352 putative carbamate kinase; Reviewed
Probab=99.93 E-value=8.9e-24 Score=179.44 Aligned_cols=200 Identities=19% Similarity=0.216 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHCCCeEEEEECCch-HHHhHHHhcc----CCCCcChHH-HHHH----HHHHHHHHHHHHHHHhcCCCe--
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGN-IFRGASAAGN----SGLDRSSAD-YIGM----LATVMNAIFLQATMESIGIPT-- 69 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~-~~~~~~~~~~----~~~~~~~~~-~~~~----~~~~~~~~l~~~~l~~~gi~a-- 69 (219)
+++++|+.|+..|+++|||||+|+ +...+.+.+. .|++.++.+ ...+ ++..++..|. ..|.++|..+
T Consensus 32 ~~a~dia~l~~~G~~lVivHG~GPqI~~~l~~~~~~~~~~g~rvt~~~~~v~~~~g~i~~~i~~~L~-~~l~~~g~~~~~ 110 (316)
T PRK12352 32 AVADTVLEMLASDYDIVLTHGNGPQVGLDLRRAEIAHEREGLPLTPLANCVADTQGGIGYLIQQALN-NRLARHGEKKAV 110 (316)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCee
Confidence 578899999999999999999998 5555444432 256666665 2222 3456777765 5777777543
Q ss_pred -----eEeccccccc---------c----------------------cc------------hHHHHH-HHHHHhCCCEEE
Q 027731 70 -----RVQTAFRMSE---------V----------------------AE------------PYIRRR-AVRHLEKGRVVI 100 (219)
Q Consensus 70 -----~~~~~~~~~~---------~----------------------~~------------~~~~~~-~~~~l~~g~ipI 100 (219)
+.+++.|..- + .. +.++.+ +..+|++|+|||
T Consensus 111 ~vvt~v~vs~~D~~f~~~~kpiG~~y~~~~a~~~~~~~~~~~~~~d~g~G~rrvv~sp~pv~~V~~~~I~~ll~~g~iVi 190 (316)
T PRK12352 111 TVVTQVEVDKNDPGFAHPTKPIGAFFSESQRDELQKANPDWRFVEDAGRGYRRVVASPEPKRIVEAPAIKALIQQGFVVI 190 (316)
T ss_pred EEEEEEEECCCCccccCCcccccCcccHHHHHHHhhhcCCceEeecCCCCeEEecCCCCCceEEcHHHHHHHHHCCCEEE
Confidence 2223221100 1 00 012333 446899999944
Q ss_pred Ee---------CCCCC-----CccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC----
Q 027731 101 FA---------AGTGN-----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---- 162 (219)
Q Consensus 101 v~---------g~~g~-----~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---- 162 (219)
.+ +..+. ..+|.|..|+.+|.+|+||+|+|+|||+|||.++| +|++++|++++..|+.++
T Consensus 191 ~~ggggiPv~~~~~g~~~n~~~nInaD~aAa~iA~aL~AdkLI~LTDV~GV~~d~~--~~~~~li~~lt~~e~~~li~~g 268 (316)
T PRK12352 191 GAGGGGIPVVRTDAGDYQSVDAVIDKDLSTALLAREIHADILVITTGVEKVCIHFG--KPQQQALDRVDIATMTRYMQEG 268 (316)
T ss_pred ecCCCCCCEEeCCCCCccCceeeecHHHHHHHHHHHhCCCEEEEEeCchhhccCCC--CCCcccccccCHHHHHHHHhcC
Confidence 43 32221 23789999999999999999999999999998765 366789999999887653
Q ss_pred ----CCCCchHHHHHHHHhCCC-cEEEEecCCCchHHHHhcCCCCceEEec
Q 027731 163 ----DLSVMDMTAITLCQENNI-PVVVFNLNQPGNIAKAIQGERVGTLIGG 208 (219)
Q Consensus 163 ----g~~~~k~~aa~~a~~~gi-~v~I~~g~~~~~i~~~l~g~~~GT~i~~ 208 (219)
|+|.+|+++|..+.+.|+ +++|++ ++.+.++|+|+ .||+|..
T Consensus 269 ~i~~GgM~pKl~aA~~al~~Gv~~v~I~~---~~~i~~al~g~-~GT~I~~ 315 (316)
T PRK12352 269 HFPPGSMLPKIIASLTFLEQGGKEVIITT---PECLPAALRGE-TGTHIIK 315 (316)
T ss_pred CcCCCCCHHHHHHHHHHHHhCCCeEEEcc---hHHHHHHHcCC-CCeEEEe
Confidence 457779999999888888 599996 77899999998 8999964
No 70
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=99.92 E-value=7.6e-24 Score=178.63 Aligned_cols=200 Identities=25% Similarity=0.364 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHCCCeEEEEECCch----HHHhHHHhccCCCCc-----ChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEe
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGN----IFRGASAAGNSGLDR-----SSADYIGMLATVMNAIFLQATMESIGIPTRVQ 72 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~----~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~ 72 (219)
..|++|+++.++||++||+||.|+ +..........+.+. -..+..++++.+++..| ...|.+.|++....
T Consensus 32 ~~a~~i~~~~~~g~~vvi~hGnGpQVG~i~~~~~~~~~~~~~~~pld~~~a~sqG~igy~l~~al-~~~l~~~g~~~~v~ 110 (313)
T PRK12454 32 KTAKQIADLIEEGYEVVITHGNGPQVGNLLLQMDAAKDVGIPPFPLDVAGAMTQGWIGYMIQQAL-RNELAKRGIEKQVA 110 (313)
T ss_pred HHHHHHHHHHHcCCEEEEEECCChHHHHHHHHHHHhcccCCCCCccchhhhhhhHHHHHHHHHHH-HHHHHhcCCCCceE
Confidence 468899999999999999999998 333322222112222 23344566777665554 57888888765322
Q ss_pred ccc-----cccc--ccch-------H------------------------------------HHHH-HHHHHhCCCEEEE
Q 027731 73 TAF-----RMSE--VAEP-------Y------------------------------------IRRR-AVRHLEKGRVVIF 101 (219)
Q Consensus 73 ~~~-----~~~~--~~~~-------~------------------------------------~~~~-~~~~l~~g~ipIv 101 (219)
+.. +..| |.+| | ++.+ +..+|+.|.|||+
T Consensus 111 t~~tq~~Vd~~Dpaf~~PtKpiG~~y~~~~a~~~~~~~g~~~~~d~g~g~RrvV~SP~P~~ive~~aI~~LLe~G~IvI~ 190 (313)
T PRK12454 111 TIVTQVIVDKNDPAFQNPTKPVGPFYDEEEAKKLAKEKGWIVKEDAGRGWRRVVPSPDPLGIVEIEVIKALVENGFIVIA 190 (313)
T ss_pred EEEEEEEECCCCccccCCCCCcCCCcCHHHHHHHHHHcCCEEEEcCCCceEEEeCCCCCccccCHHHHHHHHHCCCEEEE
Confidence 222 2111 1110 0 1122 3467999999999
Q ss_pred eCCCCCC-------------ccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC------
Q 027731 102 AAGTGNP-------------FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK------ 162 (219)
Q Consensus 102 ~g~~g~~-------------~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~------ 162 (219)
+|..|.+ ++|+|.+|+.+|.+|+||+|+|+|||||||++ |+ .|++++|++++.+|+.++
T Consensus 191 ~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LIiLTdVdGVy~~-~~-~p~~~~i~~It~~e~~~~i~~g~~ 268 (313)
T PRK12454 191 SGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFIILTDVEKVYLN-YG-KPDQKPLDKVTVEEAKKYYEEGHF 268 (313)
T ss_pred eCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEEEEeCCceeeCC-CC-CCCCeEccccCHHHHHHHHhcCCc
Confidence 9753322 35789999999999999999999999999986 32 578899999999887642
Q ss_pred --CCCCchHHHHHHHHhCC-CcEEEEecCCCchHHHHhcCCCCceEEec
Q 027731 163 --DLSVMDMTAITLCQENN-IPVVVFNLNQPGNIAKAIQGERVGTLIGG 208 (219)
Q Consensus 163 --g~~~~k~~aa~~a~~~g-i~v~I~~g~~~~~i~~~l~g~~~GT~i~~ 208 (219)
|+|..|++++..+.+.+ .+++|++ ++.+.+++.|+ .||+|.+
T Consensus 269 ~~GgM~pKv~AA~~~v~~gg~~a~I~~---~~~i~~aL~G~-~GT~I~~ 313 (313)
T PRK12454 269 KAGSMGPKILAAIRFVENGGKRAIIAS---LEKAVEALEGK-TGTRIIP 313 (313)
T ss_pred CCCChHHHHHHHHHHHHcCCCeEEECc---hHHHHHHHCCC-CCeEeCC
Confidence 45667999997766665 5798884 67888999998 7999964
No 71
>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon.
Probab=99.92 E-value=2.5e-24 Score=180.50 Aligned_cols=157 Identities=13% Similarity=0.150 Sum_probs=124.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccccccchHHHHHHHHHH----hCCCEEEEeCCCC--------CC
Q 027731 41 SSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL----EKGRVVIFAAGTG--------NP 108 (219)
Q Consensus 41 ~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~~~~~~~~~~~~l----~~g~ipIv~g~~g--------~~ 108 (219)
+..+.+...++++++.+++.+|++.|+++..+++.............++.+.+ ..+.|||++||.+ ..
T Consensus 131 ~~rd~l~S~GE~~Sa~l~a~~L~~~Gi~A~~vD~~~~~~~~~~t~~~~i~~~~~~~~~~~~v~IvtGF~~~~~G~itTLG 210 (304)
T cd04248 131 AARELLASLGEAHSAFNTALLLQNRGVNARFVDLSGWRDSGDMTLDERISEAFRDIDPRDELPIVTGYAKCAEGLMREFD 210 (304)
T ss_pred HHHHHHhhhCHHHHHHHHHHHHHHCCCCeEEECcccccccCCCCcHHHHHHHHHhhccCCcEEEeCCccCCCCCCEEEcC
Confidence 34555666778899999999999999999975543221101000112232222 2567999999832 24
Q ss_pred ccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCC--CCCcccccccHHHHhhC---CCCCchHHHHHHHHhCCCcEE
Q 027731 109 FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRN--PNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVV 183 (219)
Q Consensus 109 ~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~--~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~gi~v~ 183 (219)
+++||++|+.+|.+++|+++.|||||+ ||++||+.+ |++++|+++||+|+.++ |.+++||++++++.+++||++
T Consensus 211 RGGSDyTAs~iAa~l~A~ev~I~TDV~-i~taDPriV~~~~A~~i~~lsY~EA~ELA~~GakvLHP~ai~pa~~~~IPi~ 289 (304)
T cd04248 211 RGYSEMTFSRIAVLTGASEAIIHKEFH-LSSADPKLVGEDKARPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIPLR 289 (304)
T ss_pred CCcHHHHHHHHHHHcCCCEEEEECCCc-eecCCCCccCCCCceEeCccCHHHHHHHHHcChhhcCHHHHHHHHHcCCeEE
Confidence 689999999999999999999999996 999999999 58999999999998875 889999999999999999999
Q ss_pred EEecCCCchHHHHhcCCCCceEEe
Q 027731 184 VFNLNQPGNIAKAIQGERVGTLIG 207 (219)
Q Consensus 184 I~~g~~~~~i~~~l~g~~~GT~i~ 207 (219)
|.|.++|+ ..||+|+
T Consensus 290 Vkntf~P~---------~~GTlIt 304 (304)
T cd04248 290 VKNTFEPD---------HPGTLIT 304 (304)
T ss_pred EecCCCCC---------CCCceeC
Confidence 99999986 5799984
No 72
>PRK09181 aspartate kinase; Validated
Probab=99.92 E-value=3.9e-24 Score=191.13 Aligned_cols=156 Identities=11% Similarity=0.112 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccccccchHHHHHHHHHHh----CCCEEEEeCCCC--------CCccC
Q 027731 44 DYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE----KGRVVIFAAGTG--------NPFFT 111 (219)
Q Consensus 44 ~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~~~~~~~~~~~~l~----~g~ipIv~g~~g--------~~~~~ 111 (219)
+.+-..++++++.+++.+|++.|+++.++++.....-......+++.+.++ .+.|||++||.+ ..+++
T Consensus 140 D~l~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~Vv~GF~~~~~G~itTLGRGG 219 (475)
T PRK09181 140 EMLASIGEAHSAFNTALLLQNRGVNARFVDLTGWDDDDPLTLDERIKKAFKDIDVTKELPIVTGYAKCKEGLMRTFDRGY 219 (475)
T ss_pred HHHhhHhHHHHHHHHHHHHHhCCCCeEEeccccccCCcccchHHHHHHHHhhhccCCcEEEecCCcCCCCCCEEecCCCh
Confidence 334446678999999999999999999855422111001112344444444 478999999832 24689
Q ss_pred hHHHHHHHHHhcCCceEEeeeccCccccCCCCCC--CCCcccccccHHHHhhC---CCCCchHHHHHHHHhCCCcEEEEe
Q 027731 112 TDTAAALRCAEINAEVVLKATNVDGVYDDNPRRN--PNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFN 186 (219)
Q Consensus 112 sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~--~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~gi~v~I~~ 186 (219)
||++|+.+|.+|+|+++.|||||+ ||++||+.+ |++++|+++||+|+.++ |.+++|+++..+|.+++||++|.|
T Consensus 220 SDyTAailAa~L~A~~~~IwTDV~-I~taDPriV~~~~A~~i~~lsy~Ea~ELA~~GAkVLHp~ti~pa~~~~Ipi~V~n 298 (475)
T PRK09181 220 SEMTFSRIAVLTGADEAIIHKEYH-LSSADPKLVGEDKVVPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIPLRIKN 298 (475)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCc-cccCCCCcCCCCCCeEcCccCHHHHHHHHHcCchhcCHHHHHHHHHcCCeEEEec
Confidence 999999999999999999999997 999999999 68999999999998875 899999999999999999999999
Q ss_pred cCCCchHHHHhcCCCCceEEecC
Q 027731 187 LNQPGNIAKAIQGERVGTLIGGT 209 (219)
Q Consensus 187 g~~~~~i~~~l~g~~~GT~i~~~ 209 (219)
.++|+ ..||+|..+
T Consensus 299 t~~p~---------~~GT~I~~~ 312 (475)
T PRK09181 299 TFEPE---------HPGTLITKD 312 (475)
T ss_pred CCCCC---------CCCeEEecC
Confidence 99886 579999764
No 73
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.92 E-value=8.9e-24 Score=188.59 Aligned_cols=201 Identities=19% Similarity=0.283 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHH-HhHHHhcc-----CCCCcChH---HHHHHHHHHHHHHHHHHHHHhcCCCeeEe
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIF-RGASAAGN-----SGLDRSSA---DYIGMLATVMNAIFLQATMESIGIPTRVQ 72 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~-~~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~gi~a~~~ 72 (219)
+++++|+.|++.|.++|||||||+.. ..+...+. .|++.++. +...+....+|..+. +.|+ .|++++++
T Consensus 44 ~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~~g~~~~~~~G~RvT~~~~l~~~~~~~g~v~~~l~-~~l~-~g~~a~~~ 121 (441)
T PRK05279 44 NIVHDIALLHSLGIRLVLVHGARPQIEEQLAARGIEPRYHKGLRVTDAAALECVKQAAGELRLDIE-ARLS-MGLPNTPM 121 (441)
T ss_pred HHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHcCCCceecCCcccCCHHHHHHHHHHHHHHHHHHH-HHHh-ccCCCCcc
Confidence 57899999999999999999999854 44445442 35554433 334444456777764 5665 48887653
Q ss_pred cc-----cccc-------------cc---cc-hHHHHH-HHHHHhCCCEEEEeCC----CCC-CccChHHHHHHHHHhcC
Q 027731 73 TA-----FRMS-------------EV---AE-PYIRRR-AVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEIN 124 (219)
Q Consensus 73 ~~-----~~~~-------------~~---~~-~~~~~~-~~~~l~~g~ipIv~g~----~g~-~~~~sD~~Aa~lA~~l~ 124 (219)
.+ .+.. ++ .+ ..++.+ +..+|++|+|||+++. .|. .++|+|.+|+.||.+|+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~v~~v~~~~i~~ll~~g~ipV~~~i~~~~~g~~~ni~~D~~a~~lA~~l~ 201 (441)
T PRK05279 122 AGAHIRVVSGNFVTARPLGVDDGVDYQHTGEVRRIDAEAIRRQLDSGAIVLLSPLGYSPTGESFNLTMEEVATQVAIALK 201 (441)
T ss_pred cCCcceEeeccEEEEEECCCCCCccccceeeEEEEeHHHHHHHHHCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcC
Confidence 22 1110 00 00 012333 4468999999999873 222 35899999999999999
Q ss_pred CceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC----------CCCCchHHHHHHHHhCCC-cEEEEecCCCchH
Q 027731 125 AEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK----------DLSVMDMTAITLCQENNI-PVVVFNLNQPGNI 193 (219)
Q Consensus 125 Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~----------g~~~~k~~aa~~a~~~gi-~v~I~~g~~~~~i 193 (219)
|++|+|+|||||||++ ++++|++++.+++.++ |+|..|++++..+.+.|+ +++|++++.|+.+
T Consensus 202 a~~lv~ltdv~GV~~~------~~~~i~~i~~~~~~~~~~~~~~~~~~ggM~~Kv~~a~~~~~~gv~~v~i~~~~~~~~l 275 (441)
T PRK05279 202 ADKLIFFTESQGVLDE------DGELIRELSPNEAQALLEALEDGDYNSGTARFLRAAVKACRGGVRRSHLISYAEDGAL 275 (441)
T ss_pred CCEEEEEECCCCccCC------CCchhhhCCHHHHHHHHhhhhcCCCCccHHHHHHHHHHHHHcCCCEEEEecCCCCcHH
Confidence 9999999999999963 3689999988775432 556679999999999999 5999999999998
Q ss_pred HH-HhcCCCCceEEecCC
Q 027731 194 AK-AIQGERVGTLIGGTW 210 (219)
Q Consensus 194 ~~-~l~g~~~GT~i~~~~ 210 (219)
.. +++.++.||+|+.+.
T Consensus 276 ~~~l~~~~g~GT~i~~~~ 293 (441)
T PRK05279 276 LQELFTRDGIGTMIVMES 293 (441)
T ss_pred HHHHhcCCCCceEEecCc
Confidence 75 555566899999863
No 74
>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]
Probab=99.91 E-value=2.6e-23 Score=159.51 Aligned_cols=178 Identities=22% Similarity=0.308 Sum_probs=141.1
Q ss_pred HHHCCCeEEEEECCchHHHhHHHhc-cCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccccccchHHHHH
Q 027731 10 VTRLGIEVAIVVGGGNIFRGASAAG-NSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRR 88 (219)
Q Consensus 10 l~~~g~~vviV~GgG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~~~~~~~~ 88 (219)
+.+-+.++++|+|||.||+..+... ..+++..+.++|.+.|+.+...++++.........+ .+
T Consensus 22 le~~~~~i~iVpGGg~FAd~VR~id~~~~lSdsasHwmAI~~Md~~G~~lad~~~~~~~~tv----~e------------ 85 (212)
T COG2054 22 LENLQRSILIVPGGGIFADLVRKIDEEFGLSDSASHWMAITAMDQYGFYLADLASRFVTDTV----TE------------ 85 (212)
T ss_pred HHhhcceEEEecCchHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHhhhccccccee----ec------------
Confidence 3333457999999999999877665 378999999999999999888888765554332222 11
Q ss_pred HHHHHhCCCEEEEeCC---------CCCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHH
Q 027731 89 AVRHLEKGRVVIFAAG---------TGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEV 159 (219)
Q Consensus 89 ~~~~l~~g~ipIv~g~---------~g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~ 159 (219)
.....+.+..||+-|+ ...|.++||++|+++|+++++.++++.|||||||+.+| +++++++|+..|+
T Consensus 86 p~~~i~~~~~aVLLPyrlLr~~DplpHSW~VTSDsis~~Ia~~~~~~~vv~aTDVdGI~~~~~----~~kLv~eI~A~dl 161 (212)
T COG2054 86 PEDGIKPDAKAVLLPYRLLRKTDPLPHSWEVTSDSISVWIAAKAGATEVVKATDVDGIYEEDP----KGKLVREIRASDL 161 (212)
T ss_pred hhhccCcccceEeeehHhhhcCCCCCcceeecccHHHHHHHHHcCCcEEEEEecCCcccccCC----cchhhhhhhHhhc
Confidence 0122334455555553 13688999999999999999999999999999999876 4699999999988
Q ss_pred hhCCCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCC-CceEEec
Q 027731 160 TSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGER-VGTLIGG 208 (219)
Q Consensus 160 ~~~g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~-~GT~i~~ 208 (219)
.. |...+++..-+.+.+.+++++++|+..|+++.++++|++ +||+|.+
T Consensus 162 ~~-~~t~vD~~~P~Ll~k~~m~~~Vvng~~pervi~~lrGk~~v~T~Ivg 210 (212)
T COG2054 162 KT-GETSVDPYLPKLLVKYKMNCRVVNGKEPERVILALRGKEVVGTLIVG 210 (212)
T ss_pred cc-CcccccchhhHHHHHcCCceEEECCCCHHHHHHHHhccccceEEEeC
Confidence 76 666789999999999999999999999999999999866 6999976
No 75
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=99.91 E-value=6.9e-24 Score=199.78 Aligned_cols=157 Identities=20% Similarity=0.189 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccccc---chH-----HHHHHHHHHhC--CCEEEEeCCCC------
Q 027731 43 ADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA---EPY-----IRRRAVRHLEK--GRVVIFAAGTG------ 106 (219)
Q Consensus 43 ~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~---~~~-----~~~~~~~~l~~--g~ipIv~g~~g------ 106 (219)
.+.+-..++++++.+++.+|++.|+++.++++.+..... ... ..+++.++++. +.+||++||.|
T Consensus 122 ~d~ils~GE~~Sa~lla~~L~~~G~~a~~ld~~~~i~~~~~~~~~i~~~~~~~~l~~~~~~~~~~v~Vv~GF~g~~~~G~ 201 (810)
T PRK09466 122 YAEVVGHGEVWSARLMAALLNQQGLPAAWLDARSFLRAERAAQPQVDEGLSYPLLQQLLAQHPGKRLVVTGFISRNEAGE 201 (810)
T ss_pred hhheecHHHHHHHHHHHHHHHhCCCCcEEEcHHHheecCCCCCcccchhhhHHHHHHHHhccCCeEEEeeCccccCCCCC
Confidence 345555678999999999999999999988765531111 111 12344555554 47999999843
Q ss_pred ---CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCCC
Q 027731 107 ---NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNI 180 (219)
Q Consensus 107 ---~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~gi 180 (219)
..+++||++|+.+|..|+|+++.|||||||||++||+.+|++++|++++|+|+.++ |.+++|+++..+|.+++|
T Consensus 202 ~ttLGRGGSD~tA~~la~~l~A~~v~i~tDV~Gi~taDPr~v~~A~~i~~isy~Ea~ela~~GakVlHp~ti~pa~~~~I 281 (810)
T PRK09466 202 TVLLGRNGSDYSATLIGALAGVERVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSDI 281 (810)
T ss_pred EEEcCCChHHHHHHHHHHHcCCCEEEEEeCCCccccCCcccCCCceEcccCCHHHHHHHHHcCccccCHHHHHHHHHcCC
Confidence 24688999999999999999999999999999999999999999999999998875 899999999999999999
Q ss_pred cEEEEecCCCchHHHHhcCCCCceEEec
Q 027731 181 PVVVFNLNQPGNIAKAIQGERVGTLIGG 208 (219)
Q Consensus 181 ~v~I~~g~~~~~i~~~l~g~~~GT~i~~ 208 (219)
|++|.|.++|+ ..||+|..
T Consensus 282 pi~V~ntf~p~---------~~GT~I~~ 300 (810)
T PRK09466 282 DLQLRCSYQPE---------QGSTRIER 300 (810)
T ss_pred eEEEecCCCCC---------CCceEEec
Confidence 99999999886 57999975
No 76
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=99.91 E-value=1.3e-23 Score=200.41 Aligned_cols=153 Identities=25% Similarity=0.325 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCeeEeccccccccc--------chH--------HHHHHH-HHHhCC-CEEEEeCCCC----
Q 027731 49 LATVMNAIFLQATMESIGIPTRVQTAFRMSEVA--------EPY--------IRRRAV-RHLEKG-RVVIFAAGTG---- 106 (219)
Q Consensus 49 ~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~--------~~~--------~~~~~~-~~l~~g-~ipIv~g~~g---- 106 (219)
.++++++.|++.+|++.|+++..+++.+..... .++ .+.++. .+++.+ .|||++||.|
T Consensus 125 ~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~ 204 (861)
T PRK08961 125 QGELLSTTLGAAYLEASGLDMGWLDAREWLTALPQPNQSEWSQYLSVSCQWQSDPALRERFAAQPAQVLITQGFIARNAD 204 (861)
T ss_pred ehHHHHHHHHHHHHHhCCCCcEEEcHHHhEeecCccccccccccccceecHhhHHHHHHHHhccCCeEEEeCCcceeCCC
Confidence 456899999999999999999988765432110 011 122233 344444 4999999843
Q ss_pred -----CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhC
Q 027731 107 -----NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQEN 178 (219)
Q Consensus 107 -----~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~ 178 (219)
..+++||++|+.+|..|+|+++++||||||||++||+.+|+++++++++++|+.++ |.+++|++|+++|.++
T Consensus 205 g~~ttLgrggsD~~A~~iA~~l~a~~~~i~tdv~Gv~t~dP~~~~~a~~i~~ls~~e~~el~~~g~~v~~~~a~~~a~~~ 284 (861)
T PRK08961 205 GGTALLGRGGSDTSAAYFAAKLGASRVEIWTDVPGMFSANPKEVPDARLLTRLDYDEAQEIATTGAKVLHPRSIKPCRDA 284 (861)
T ss_pred CCEEEEeCCchHHHHHHHHHHcCCCEEEEEeCCCccccCCCCCCCCceEecccCHHHHHHHHHCCCeEECHHHHHHHHHC
Confidence 24689999999999999999999999999999999999999999999999998764 8889999999999999
Q ss_pred CCcEEEEecCCCchHHHHhcCCCCceEEecCC
Q 027731 179 NIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW 210 (219)
Q Consensus 179 gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~~ 210 (219)
|||++|.|+++|+ ..||+|..+.
T Consensus 285 ~i~i~v~~~~~~~---------~~gT~I~~~~ 307 (861)
T PRK08961 285 GIPMAILDTERPD---------LSGTSIDGDA 307 (861)
T ss_pred CCCEEEEeCCCCC---------CCccEEeCCC
Confidence 9999999999885 5799997653
No 77
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=99.91 E-value=2.9e-23 Score=172.93 Aligned_cols=187 Identities=10% Similarity=0.125 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccccc-
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV- 80 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~- 80 (219)
+++++|+-|++-|.++|||||||+..... +. +.+... ..+.....|..++ ..|+++|++++++++.. ..+
T Consensus 55 ~l~~dla~L~~lGl~~VlVHGggp~i~~~--l~----~~~~~~-~~~v~~~~n~~Lv-~~L~~~G~~A~gl~g~~-~~i~ 125 (271)
T cd04236 55 SLSFGLAFLQRMDMKLLVVMGLSAPDGTN--MS----DLELQA-ARSRLVKDCKTLV-EALQANSAAAHPLFSGE-SVLQ 125 (271)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCChHHhhh--hc----CCcchh-eehhHHHHHHHHH-HHHHhCCCCeeeecCcc-ceEE
Confidence 68999999999999999999999853311 11 111111 2222225677765 68899999999887552 111
Q ss_pred ----------cc-hHHHHH-HHHHHhCCCEEEEeCC----CCC-CccChHHHHHHHHHhcCCceEEeeeccCccccCCCC
Q 027731 81 ----------AE-PYIRRR-AVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPR 143 (219)
Q Consensus 81 ----------~~-~~~~~~-~~~~l~~g~ipIv~g~----~g~-~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~ 143 (219)
.+ ..++.+ +..+|+.|+|||+++. .|. .++++|.+|+.+|.+|+|++|+|+||++|||++
T Consensus 126 a~~~~d~g~vG~V~~Vd~~~I~~lL~~g~IPVisplg~~~~G~~~NiNaD~~A~~lA~aL~A~KLIfltd~~GV~~~--- 202 (271)
T cd04236 126 AEEPEPGASKGPSVSVDTELLQWCLGSGHIPLVCPIGETSSGRSVSLDSSEVTTAIAKALQPIKVIFLNRSGGLRDQ--- 202 (271)
T ss_pred EEEcccCCccceEEEECHHHHHHHHhCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCcceECC---
Confidence 00 113444 4468999999999983 333 458999999999999999999999999999974
Q ss_pred CCCCCcccccccH-HHHhhC-------CCC---CchHHHHHHHHhCCCcEEEEecCCCchH-HHHhcCCCCceEE
Q 027731 144 RNPNARLLDTLTY-QEVTSK-------DLS---VMDMTAITLCQENNIPVVVFNLNQPGNI-AKAIQGERVGTLI 206 (219)
Q Consensus 144 ~~~~a~~i~~i~~-~e~~~~-------g~~---~~k~~aa~~a~~~gi~v~I~~g~~~~~i-~~~l~g~~~GT~i 206 (219)
+.++|++++. +|+.++ |+| +.|++++..+...|+.|+|++ |+.+ .++|+..+.||+|
T Consensus 203 ---~g~lI~~l~~~~e~~~li~~g~i~gGm~~ki~ki~~~l~~l~~g~sv~I~~---~~~ll~elft~~g~GT~~ 271 (271)
T cd04236 203 ---KHKVLPQVHLPADLPSLSDAEWLSETEQNRIQDIATLLNALPSMSSAVITS---AETLLTELFSHKGSGTLF 271 (271)
T ss_pred ---CCCCccccCcHHHHHHHHhCCEEcCCeeechHHHHHHHHhcccCCeEEEeC---hHHHHHHHhccCCCCCcC
Confidence 2579999995 776653 677 679999999999999999997 6666 5899988899986
No 78
>PRK12686 carbamate kinase; Reviewed
Probab=99.90 E-value=2.1e-22 Score=170.16 Aligned_cols=199 Identities=18% Similarity=0.247 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHCCCeEEEEECCch-HHHhHH-Hhcc--CCCCcChHHHHHH-----HHHHHHHHHHHHHHHhcCCCe--e
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGN-IFRGAS-AAGN--SGLDRSSADYIGM-----LATVMNAIFLQATMESIGIPT--R 70 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~-~~~~~~-~~~~--~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~gi~a--~ 70 (219)
..|++|+.|.+.||++||+||+|+ ++..+. .... ...+.-+++...+ .+-+++..| .+.|.+.++.. +
T Consensus 30 ~~a~~ia~l~~~g~~~vi~HGnGPQVg~~~~~~~~~~~~~~~~~pl~~~~a~sqg~iGy~~~q~l-~~~l~~r~~~~~v~ 108 (312)
T PRK12686 30 EAAQHLVDLIEAGHDIVITHGNGPQVGNLLLQQAESNSNKVPAMPLDTCVAMSQGMIGYWLQNAL-NNELTERGIDKPVI 108 (312)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHhccccCCCCCChhhhhhhccchhhHHHHHHH-HHHHHhcCCCCCce
Confidence 468999999999999999999998 542221 2111 1234445555433 333344343 45666555432 1
Q ss_pred ---Eeccccccc---------------------------------ccchH------------HHHHH-HHHHhCCCEEEE
Q 027731 71 ---VQTAFRMSE---------------------------------VAEPY------------IRRRA-VRHLEKGRVVIF 101 (219)
Q Consensus 71 ---~~~~~~~~~---------------------------------~~~~~------------~~~~~-~~~l~~g~ipIv 101 (219)
-+...+..| ..+-| ++.++ ..+|+.|+|||.
T Consensus 109 ~vvtqv~Vd~~d~af~~ptk~ig~~~~~~~a~~~~~~~g~~~~~d~~~G~rrvV~sP~P~~ive~~~I~~Ll~~G~IpI~ 188 (312)
T PRK12686 109 TLVTQVEVDKDDPAFANPTKPIGPFYTEEEAKQQAEQPGSTFKEDAGRGYRRVVPSPKPQEIIEHDTIRTLVDGGNIVIA 188 (312)
T ss_pred EEEEEEEECCCChhhcCCCCCccCccCHHHHHHHHHHcCCcccccCCCCeEEeeCCCCCccccCHHHHHHHHHCCCEEEE
Confidence 122222110 00000 23333 468899998887
Q ss_pred eCCC--------C----C-CccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC------
Q 027731 102 AAGT--------G----N-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK------ 162 (219)
Q Consensus 102 ~g~~--------g----~-~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~------ 162 (219)
++.. + . .++|+|.+|+.||.+|+||+|+|+|||||||++ |. .|++++|++++.+|+..+
T Consensus 189 ~GgggIPVv~~~~~~~gv~avid~D~~Aa~LA~~L~Ad~LIiLTDVdGVy~~-~~-~p~ak~I~~I~~~e~~~li~~g~~ 266 (312)
T PRK12686 189 CGGGGIPVIRDDNTLKGVEAVIDKDFASEKLAEQIDADLLIILTGVENVFIN-FN-KPNQQKLDDITVAEAKQYIAEGQF 266 (312)
T ss_pred eCCCCCCeEecCCcEEeeecccCccHHHHHHHHHcCCCEEEEEeCchhhccC-CC-CCCCeECCccCHHHHHHHhhCCCc
Confidence 6431 1 1 267999999999999999999999999999995 53 478899999999887643
Q ss_pred --CCCCchHHHHHHHHhC--CCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731 163 --DLSVMDMTAITLCQEN--NIPVVVFNLNQPGNIAKAIQGERVGTLIG 207 (219)
Q Consensus 163 --g~~~~k~~aa~~a~~~--gi~v~I~~g~~~~~i~~~l~g~~~GT~i~ 207 (219)
|+|..|++||..+.+. |.+++|++ ++.+.++++|+ .||+|.
T Consensus 267 ~tGGM~pKveAA~~av~~g~g~~viI~~---~~~i~~aL~G~-~GT~I~ 311 (312)
T PRK12686 267 APGSMLPKVEAAIDFVESGEGKKAIITS---LEQAKEALAGN-AGTHIT 311 (312)
T ss_pred cCCCcHHHHHHHHHHHHhCCCCEEEEeC---chHHHHHhCCC-CCeEEe
Confidence 5566799999998865 56788886 67888999987 799995
No 79
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=99.90 E-value=6.3e-23 Score=194.26 Aligned_cols=159 Identities=27% Similarity=0.318 Sum_probs=130.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccc----ccch-----HHHHHHHHHH-hCCCEEEEeCCCC-----
Q 027731 42 SADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSE----VAEP-----YIRRRAVRHL-EKGRVVIFAAGTG----- 106 (219)
Q Consensus 42 ~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~----~~~~-----~~~~~~~~~l-~~g~ipIv~g~~g----- 106 (219)
..+.+-..++++++.+++.+|++.|+++.++++.+... +.+. ....++.+++ +.+.|||++||.+
T Consensus 118 ~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~~~~~~~~~~~~i~~~~~~~~~v~Vv~Gfig~~~~G 197 (819)
T PRK09436 118 VNAAIISRGERLSIAIMAAVLEARGHDVTVIDPRELLLADGHYLESTVDIAESTRRIAASFIPADHVILMPGFTAGNEKG 197 (819)
T ss_pred hhhheeeHHHHHHHHHHHHHHHhCCCCeEEECHHHeEEecCCCCCceechHhhHHHHHHHHhcCCcEEEecCcccCCCCC
Confidence 34555567889999999999999999999887654311 1111 1123344443 4688999999833
Q ss_pred ----CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCC
Q 027731 107 ----NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENN 179 (219)
Q Consensus 107 ----~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~g 179 (219)
..+++||++|+.+|..++|+.+++||||||||++||+.+|+++++++++|+|+.++ |.+++|++|+.+|.+++
T Consensus 198 ~~ttlGRgGSD~~A~~~A~~l~A~~~~i~tdVdGvyt~DP~~~~~A~~i~~isy~ea~el~~~G~kvlhp~a~~~a~~~~ 277 (819)
T PRK09436 198 ELVTLGRNGSDYSAAILAACLDADCCEIWTDVDGVYTADPRVVPDARLLKSLSYQEAMELSYFGAKVLHPRTIAPIAQFQ 277 (819)
T ss_pred CEEEeCCCCchHHHHHHHHHcCCCEEEEEECCCceECCCCCCCCCCeEeeEecHHHHHHHHhcCCccchHHHHHHHHHCC
Confidence 14578999999999999999999999999999999999999999999999998874 89999999999999999
Q ss_pred CcEEEEecCCCchHHHHhcCCCCceEEecC
Q 027731 180 IPVVVFNLNQPGNIAKAIQGERVGTLIGGT 209 (219)
Q Consensus 180 i~v~I~~g~~~~~i~~~l~g~~~GT~i~~~ 209 (219)
||++|.|+++|+ ..||+|..+
T Consensus 278 Ipi~i~n~~~p~---------~~GT~I~~~ 298 (819)
T PRK09436 278 IPCLIKNTFNPQ---------APGTLIGAE 298 (819)
T ss_pred ceEEEccCCCCC---------CCceEEEec
Confidence 999999999887 579999764
No 80
>PRK12354 carbamate kinase; Reviewed
Probab=99.89 E-value=1.2e-21 Score=164.89 Aligned_cols=117 Identities=27% Similarity=0.278 Sum_probs=92.3
Q ss_pred HHHHHhCCCEEEEeC---------CCCC-----CccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccc
Q 027731 89 AVRHLEKGRVVIFAA---------GTGN-----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTL 154 (219)
Q Consensus 89 ~~~~l~~g~ipIv~g---------~~g~-----~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i 154 (219)
+..+|++|.|||.+| +++. .++|+|.+|+.||.+++||+|+|+|||||||++++ .|++++|+++
T Consensus 168 I~~Ll~~g~ivIa~GGGGIPV~~~~~~~~~gv~aViD~D~~Aa~LA~~l~Ad~LiiLTdVdGVy~~~~--~p~~k~i~~i 245 (307)
T PRK12354 168 IRWLLEKGHLVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTDVDAVYLDWG--KPTQRAIAQA 245 (307)
T ss_pred HHHHHHCCCEEEEeCCCccCeEecCCCceeeeeecCCccHHHHHHHHHcCCCEEEEEeCCcceecCCC--CCCCeECCCC
Confidence 446889999755543 2221 25799999999999999999999999999999753 4788999999
Q ss_pred cHHHHhhC----CCCCchHHHHHHHHhCCC-cEEEEecCCCchHHHHhcCCCCceEEecCCC
Q 027731 155 TYQEVTSK----DLSVMDMTAITLCQENNI-PVVVFNLNQPGNIAKAIQGERVGTLIGGTWN 211 (219)
Q Consensus 155 ~~~e~~~~----g~~~~k~~aa~~a~~~gi-~v~I~~g~~~~~i~~~l~g~~~GT~i~~~~~ 211 (219)
+.+|+.++ |+|..|++++..+.+.+. +++|.+ ++.+.+++.|+ .||+|.++..
T Consensus 246 t~~e~~~~~f~~GgM~pKV~AA~~~~~~gg~~viI~~---~~~l~~al~G~-~GT~I~~~~~ 303 (307)
T PRK12354 246 TPDELRELGFAAGSMGPKVEAACEFVRATGKIAGIGS---LEDIQAILAGE-AGTRISPETA 303 (307)
T ss_pred CHHHHHhhCCCcCChHHHHHHHHHHHHhCCCEEEECC---HHHHHHHHCCC-CceEEecCCC
Confidence 99888764 567779999977666544 688853 66788999887 7999987543
No 81
>PRK04531 acetylglutamate kinase; Provisional
Probab=99.87 E-value=9.9e-21 Score=165.84 Aligned_cols=175 Identities=18% Similarity=0.263 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHH-HhHHHhcc-----CCCCcChHHHHHH---HHHHHHHHHHHHHHHhcCCCeeEe
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIF-RGASAAGN-----SGLDRSSADYIGM---LATVMNAIFLQATMESIGIPTRVQ 72 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~-~~~~~~~~-----~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~gi~a~~~ 72 (219)
+++++|+.|++.|.++|||||||+.. ..+...+. .|++.++.+.+.. ....+|..++..
T Consensus 54 ~l~~dla~L~~~G~~~VlVHGggpqI~~~l~~~gie~~~v~G~RVTd~~tl~vv~~~l~~vn~~lv~~------------ 121 (398)
T PRK04531 54 ALASSLSFLQEVGLTPIVVHGAGPQLDAELDAAGIEKETVNGLRVTSPEALAIVRKVFQRSNLDLVEA------------ 121 (398)
T ss_pred HHHHHHHHHHHCCCcEEEEECCCHHHHHHHHHcCCCcEEECCEecCCHHHHHHHHHHHHHHHHHHHHH------------
Confidence 58899999999999999999999854 44445442 3555444433332 222333322211
Q ss_pred cccccccccchHHHHHHHHHHhCCCEEEEeCC----CCCC-ccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCC
Q 027731 73 TAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAG----TGNP-FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPN 147 (219)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~g~ipIv~g~----~g~~-~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~ 147 (219)
+..+|+.|.|||+++. .|.. ++++|.+|+.+|.+|+|++|+|+|||+|||+.+
T Consensus 122 ----------------I~~~L~~g~IPVlsplg~~~~G~~~NvnaD~vA~~LA~aL~a~KLIfltdv~GV~d~~------ 179 (398)
T PRK04531 122 ----------------VESSLRAGSIPVIASLGETPSGQILNINADVAANELVSALQPYKIIFLTGTGGLLDAD------ 179 (398)
T ss_pred ----------------HHHHHHCCCEEEEeCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCCC------
Confidence 3468999999999874 2333 489999999999999999999999999999743
Q ss_pred CcccccccH-HHHhhC-------CCCCchHHHHHHHHhCCCcEEEEecCCCchHH-HHhcCCCCceEEecCC
Q 027731 148 ARLLDTLTY-QEVTSK-------DLSVMDMTAITLCQENNIPVVVFNLNQPGNIA-KAIQGERVGTLIGGTW 210 (219)
Q Consensus 148 a~~i~~i~~-~e~~~~-------g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~-~~l~g~~~GT~i~~~~ 210 (219)
++++++++. ++...+ |+|..|++++..+.+....+++++...|+.+. ++++.++.||+|....
T Consensus 180 g~~i~~i~~~~e~~~l~~~~~vtgGM~~KL~~a~~al~~~~~~~~V~i~~~~~Ll~eLft~~G~GT~I~~g~ 251 (398)
T PRK04531 180 GKLISSINLSTEYDHLMQQPWINGGMKLKLEQIKELLDRLPLESSVSITSPSDLAKELFTHKGSGTLVRRGE 251 (398)
T ss_pred CCCcccCCHHHHHHHHHhcCCCCccHHHHHHHHHHHHhCCCcEEEEEecCCCHHHHHHccCCCCCeEEecCC
Confidence 578999985 344332 55666999999988653357888888899986 5677777899998643
No 82
>PRK09411 carbamate kinase; Reviewed
Probab=99.86 E-value=2.7e-20 Score=155.61 Aligned_cols=198 Identities=22% Similarity=0.262 Sum_probs=130.8
Q ss_pred HHHHHHHHHHCCCeEEEEECCch-HHHhHHHhcc-CCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCe--eE---eccc
Q 027731 3 IAREVASVTRLGIEVAIVVGGGN-IFRGASAAGN-SGLDRSSADYIGMLATVMNAIFLQATMESIGIPT--RV---QTAF 75 (219)
Q Consensus 3 la~~i~~l~~~g~~vviV~GgG~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a--~~---~~~~ 75 (219)
-|+.|+++.++ |++||+||-|+ ++..+..... ...+.-+++..++...-+-.+++++.|...+++. +. +...
T Consensus 32 ~a~~ia~l~~~-~~~vitHGNGPQVG~l~~~~~~~~~~~~~pld~~~a~sqG~iGy~l~q~l~~~~~~~~v~t~~Tq~~V 110 (297)
T PRK09411 32 AVPALARLARS-YRLAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAESQGMIGYMLAQSLSAQPQMPPVTTVLTRIEV 110 (297)
T ss_pred HHHHHHHHHHc-CCEEEEeCCccHHHHHHHHHHhhcCCCCCCchhhhhhcccHHHHHHHHHHHHcCCCCCeEEEEEEEEE
Confidence 47889999987 99999999898 4332211111 1224445555443222122234455666555432 11 1222
Q ss_pred cccc--ccc-----------------------------hH-------------HHHH-HHHHHhCCCEEEEeCC------
Q 027731 76 RMSE--VAE-----------------------------PY-------------IRRR-AVRHLEKGRVVIFAAG------ 104 (219)
Q Consensus 76 ~~~~--~~~-----------------------------~~-------------~~~~-~~~~l~~g~ipIv~g~------ 104 (219)
+..| |.+ ++ ++.+ +..+|++|.|||.+|.
T Consensus 111 d~~DpaF~~PtKpiG~~y~~e~a~~l~~e~g~~~~~dg~g~rrVVpSP~P~~iVe~~~I~~Ll~~G~IVI~~gGGGIPV~ 190 (297)
T PRK09411 111 SPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQPRKILDSEAIELLLKEGHVVICSGGGGVPVT 190 (297)
T ss_pred CCCCccccCCCCccCCccCHHHHHHHHHhcCCEEEecCCceEEEccCCCCcceECHHHHHHHHHCCCEEEecCCCCCCeE
Confidence 2111 000 00 1233 4468999999777642
Q ss_pred ---CC-CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC----CCCCchHHHHHHHH
Q 027731 105 ---TG-NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK----DLSVMDMTAITLCQ 176 (219)
Q Consensus 105 ---~g-~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~----g~~~~k~~aa~~a~ 176 (219)
.+ ..++|+|.+|+.+|..|+||+|+|+|||||||+++ ..|++++|++++.+|+..+ |+|..|++++..+.
T Consensus 191 ~~~~G~e~vIDkD~~Aa~LA~~L~Ad~LIiLTDVdGV~~n~--~~p~~~~I~~it~~e~~~~~~~~GgM~pKVeAA~~~v 268 (297)
T PRK09411 191 EDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENW--GTPQQRAIRHATPDELAPFAKADGAMGPKVTAVSGYV 268 (297)
T ss_pred EcCCCeEEecCHHHHHHHHHHHhCCCEEEEEeCchhhccCC--CCCCCcCCCCcCHHHHHHhccCCCCcHHHHHHHHHHH
Confidence 22 23689999999999999999999999999999864 3577899999999888654 67788999996555
Q ss_pred h-CCCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731 177 E-NNIPVVVFNLNQPGNIAKAIQGERVGTLIG 207 (219)
Q Consensus 177 ~-~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~ 207 (219)
+ .|.+++|.+ ++.+.+++.|+ .||+|.
T Consensus 269 ~~~g~~a~I~~---l~~~~~~l~G~-~GT~I~ 296 (297)
T PRK09411 269 RSRGKPAWIGA---LSRIEETLAGE-AGTCIS 296 (297)
T ss_pred HhCCCeEEECC---hhHHHHHHCCC-CCeEEe
Confidence 5 466788864 67788899987 799985
No 83
>PLN02825 amino-acid N-acetyltransferase
Probab=99.86 E-value=2.6e-20 Score=167.27 Aligned_cols=202 Identities=16% Similarity=0.207 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHCCCeEEEEECCch-HHHhHHHhcc-----CCCCcChHHHH---HHHHHHHHHHHHHH--------HHHh
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGN-IFRGASAAGN-----SGLDRSSADYI---GMLATVMNAIFLQA--------TMES 64 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~-~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~~~~l~~~--------~l~~ 64 (219)
+++.+|+.|+..|.++|||||||+ +...+...+. .|++.++.+.+ ..++..++..+.+. .|++
T Consensus 36 ~l~~DialL~~lGi~~VlVHGggpqI~~~l~~~gi~~~f~~G~RVTd~~~L~~~~~~~G~v~~~i~a~Ls~~~~v~~l~~ 115 (515)
T PLN02825 36 NILQDISLLHGLGIKFVLVPGTHVQIDKLLAERGREPKYVGAYRITDSAALQASMEAAGKIRVMIEAKLSPGPSIPNLRR 115 (515)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCHHHHHHHHHcCCCceeeCCcccCCHHHHHHHHHHHHHHHHHHHHhhccccchhHHHh
Confidence 578999999999999999999998 5555555553 46666554433 33555677776643 3688
Q ss_pred cCCCe----eEecccccc-------------ccc---c-hHHHHH-HHHHHhCCCEEEEeCC----CCCC-ccChHHHHH
Q 027731 65 IGIPT----RVQTAFRMS-------------EVA---E-PYIRRR-AVRHLEKGRVVIFAAG----TGNP-FFTTDTAAA 117 (219)
Q Consensus 65 ~gi~a----~~~~~~~~~-------------~~~---~-~~~~~~-~~~~l~~g~ipIv~g~----~g~~-~~~sD~~Aa 117 (219)
+|.++ ..++..+.. |+. + +.++.. +..+|+.|.|||+++- .|.. ++++|.+|+
T Consensus 116 ~G~~a~~~~~gl~~~~Gn~v~a~~~gv~dgvD~g~vG~V~~Vd~~~i~~~L~~g~Ipvisplg~s~~Ge~~NinaD~vA~ 195 (515)
T PLN02825 116 HGDNSRWHEVGVSVASGNFLAAKRRGVVNGVDFGATGEVKKIDVSRIKERLDSNCIVLLSNLGYSSSGEVLNCNTYEVAT 195 (515)
T ss_pred cCCCCccccCceEeccCcEEEEEECCCCcCccccceeeEEEEcHHHHHHHHhCCCeEEECCceECCCCCEEeeCHHHHHH
Confidence 89887 444433321 111 0 113444 4468999999999983 4444 499999999
Q ss_pred HHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---C------------------------C------
Q 027731 118 LRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---D------------------------L------ 164 (219)
Q Consensus 118 ~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g------------------------~------ 164 (219)
.+|.+|+|++|||+||++ +++. +++++++++.+|+.++ + .
T Consensus 196 avA~aL~A~KLI~ltd~~-~~~~------~g~li~~l~~~e~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (515)
T PLN02825 196 ACALAIGADKLICIVDGP-ILDE------NGRLIRFMTLEEADMLIRKRAKQSEIAANYVKAVGGEDYSYSLGLDSVNTT 268 (515)
T ss_pred HHHHHcCCCeEEEEeCcc-eecC------CCCCcCcCCHHHHHHHHHhhhhcchhhhhhhhhcccccccccccccccccc
Confidence 999999999999999977 5543 2578888888765432 0 0
Q ss_pred --------------------------C-------------------C-----chHHHHHHHHhCCCc-EEEEecCCCchH
Q 027731 165 --------------------------S-------------------V-----MDMTAITLCQENNIP-VVVFNLNQPGNI 193 (219)
Q Consensus 165 --------------------------~-------------------~-----~k~~aa~~a~~~gi~-v~I~~g~~~~~i 193 (219)
. . .++.+|..|++.||+ +|++++...+.|
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~a~~~gv~r~hl~~~~~~gal 348 (515)
T PLN02825 269 PFNNNGRGFWGSGSATDSFQNGVGFDNGNGLSGEQGFAIGGEERLSRLNGYLSELAAAAFVCRGGVQRVHLLDGTIEGVL 348 (515)
T ss_pred ccccccccccccccccccccccccccCcccccccccccccchhhchhhhhHHHHHHHHHHHHHcCCCeEEeccCCCCchH
Confidence 0 0 037788999999997 999999999988
Q ss_pred H-HHhcCCCCceEEecCC
Q 027731 194 A-KAIQGERVGTLIGGTW 210 (219)
Q Consensus 194 ~-~~l~g~~~GT~i~~~~ 210 (219)
+ ++|+.+++||+|..+.
T Consensus 349 l~elft~dg~gt~i~~~~ 366 (515)
T PLN02825 349 LLELFTRDGMGTMIASDM 366 (515)
T ss_pred HHHhhccCCceeEeccCh
Confidence 5 8999999999998753
No 84
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=99.84 E-value=9.7e-21 Score=160.51 Aligned_cols=164 Identities=23% Similarity=0.286 Sum_probs=132.2
Q ss_pred CCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccc-----ccch--H--HHHHHHHH----H-hCCCEEEEeC
Q 027731 38 LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSE-----VAEP--Y--IRRRAVRH----L-EKGRVVIFAA 103 (219)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~-----~~~~--~--~~~~~~~~----l-~~g~ipIv~g 103 (219)
++.++.|.+...++.++.++++++|+..|.++...+...... +.+. + .-....++ + ..+.+||+.|
T Consensus 187 lt~RTrD~lvs~GE~lS~rf~aA~lnd~G~kar~~D~~~I~~~~~d~~t~~d~~~a~~~av~k~~~~~~aken~VPVvTG 266 (559)
T KOG0456|consen 187 LTLRTRDYLVSFGECLSTRFFAAYLNDIGHKARQYDAFEIGFITTDDFTNDDILEATYPAVSKLLSGDWAKENAVPVVTG 266 (559)
T ss_pred cchhhhhHhhhhhhHHHHHHHHHHHHhcCccceeechhheeccccccccchhHHHHHHHHHHHhcccccccCCccceEee
Confidence 344556666667788999999999999999998766554432 2211 1 00111122 2 3467999999
Q ss_pred CCC----------CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHH
Q 027731 104 GTG----------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMT 170 (219)
Q Consensus 104 ~~g----------~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~ 170 (219)
|.| ..++.+|.+|+.+|.+|++|++-+|+|||||+++||+++|.|++++.++++|+.++ |..++||.
T Consensus 267 f~Gk~~~tg~lt~lGRG~sDl~At~i~~al~~~EiQVWKdVDGv~T~DP~~~p~Ar~vp~lT~dEAaELaYfGaqVlHP~ 346 (559)
T KOG0456|consen 267 FLGKGWPTGALTTLGRGGSDLTATTIGKALGLDEIQVWKDVDGVLTCDPRIYPGARLVPYLTFDEAAELAYFGAQVLHPF 346 (559)
T ss_pred ccccCccccceecccCCchhhHHHHHHHHcCchhhhhhhhcCceEecCCccCCCccccCccCHHHHHHHHhhhhhhcccc
Confidence 854 24688999999999999999999999999999999999999999999999998885 88899999
Q ss_pred HHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEecCC
Q 027731 171 AITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW 210 (219)
Q Consensus 171 aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~~ 210 (219)
+.+++.+..||++|.|..+|. ..||.|+++.
T Consensus 347 sM~~~~~~~IPvRvKN~~NP~---------~~GTvI~~d~ 377 (559)
T KOG0456|consen 347 SMRPAREGRIPVRVKNSYNPT---------APGTVITPDR 377 (559)
T ss_pred ccchhhccCcceEeecCCCCC---------CCceEeccch
Confidence 999999999999999998886 6799999873
No 85
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=99.74 E-value=3.7e-16 Score=128.30 Aligned_cols=199 Identities=26% Similarity=0.351 Sum_probs=132.8
Q ss_pred HHHHHHHHHHCCCeEEEEECCch-HHHhHH---Hhcc-CCCCcChHHHHHH-----HHHHHHHHHHHHHHHhcCCC--ee
Q 027731 3 IAREVASVTRLGIEVAIVVGGGN-IFRGAS---AAGN-SGLDRSSADYIGM-----LATVMNAIFLQATMESIGIP--TR 70 (219)
Q Consensus 3 la~~i~~l~~~g~~vviV~GgG~-~~~~~~---~~~~-~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~gi~--a~ 70 (219)
-+++|+.+.++||++||.||-|+ ++.... .+.. .+.+..+++...+ .+-++... +...|..+|++ +.
T Consensus 31 ta~~i~~l~~~g~e~VitHGNGPQVG~l~lq~~aa~~~~~~p~~PLd~~~AmsQG~IGy~l~qa-l~n~l~~~~~~~~v~ 109 (312)
T COG0549 31 TAEQIADLIASGYEVVITHGNGPQVGLLLLQNEAADSEKGVPAYPLDVLVAMSQGMIGYMLQQA-LRNELPRRGLEKPVV 109 (312)
T ss_pred HHHHHHHHHhcCCeEEEEcCCCchHHHHHHHhhhhccccCCCCccHHHHhHhhhhHHHHHHHHH-HHHHHhhcCCCCcee
Confidence 47889999999999999999898 432211 1111 2234445565443 22233333 34567777853 11
Q ss_pred -E--eccccccc--ccc------------------------------h-H------------HH-HHHHHHHhCCCEEEE
Q 027731 71 -V--QTAFRMSE--VAE------------------------------P-Y------------IR-RRAVRHLEKGRVVIF 101 (219)
Q Consensus 71 -~--~~~~~~~~--~~~------------------------------~-~------------~~-~~~~~~l~~g~ipIv 101 (219)
. +...+..| |.+ + | +. +.+..++++|.++|.
T Consensus 110 tvvTqv~VD~nDPAF~nPtKpIGpfY~~eea~~l~~~~gw~~keD~~rG~RRVVpSP~P~~IvE~~~Ik~L~~~g~vVI~ 189 (312)
T COG0549 110 TVVTQVEVDANDPAFLNPTKPIGPFYSEEEAEELAKEYGWVFKEDAGRGYRRVVPSPKPVRIVEAEAIKALLESGHVVIA 189 (312)
T ss_pred EEEEEEEEcCCCccccCCCCCCCCCcCHHHHHHHHhhcCcEEEecCCCCeeEecCCCCCccchhHHHHHHHHhCCCEEEE
Confidence 1 22222111 000 0 0 11 224468899999998
Q ss_pred eCCCCC-------------CccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC------
Q 027731 102 AAGTGN-------------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK------ 162 (219)
Q Consensus 102 ~g~~g~-------------~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~------ 162 (219)
.|..|. ..+|-|..++.||..++||.|+|+||||+||-.-. -|+.+.+++++.+|++++
T Consensus 190 ~GGGGIPVv~~~~~~~GVeAVIDKDlasalLA~~i~AD~liILTdVd~Vy~n~g--kp~q~~L~~v~~~e~~~yl~eg~F 267 (312)
T COG0549 190 AGGGGIPVVEEGAGLQGVEAVIDKDLASALLAEQIDADLLIILTDVDAVYVNFG--KPNQQALDRVTVDEMEKYLAEGQF 267 (312)
T ss_pred eCCCCcceEecCCCcceeeEEEccHHHHHHHHHHhcCCEEEEEeccchheecCC--CccchhhcccCHHHHHHHHhcCCC
Confidence 875332 24899999999999999999999999999998753 356789999999996642
Q ss_pred --CCCCchHHHHHHH-HhCCCcEEEEecCCCchHHHHhcCCCCceEEec
Q 027731 163 --DLSVMDMTAITLC-QENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 208 (219)
Q Consensus 163 --g~~~~k~~aa~~a-~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~ 208 (219)
|.|.+|++||..- .+.|-+++|.+ .+.+.+++.|+ .||.|.+
T Consensus 268 a~GSM~PKVeAai~Fv~~~gk~A~Its---Le~~~~~l~g~-~GT~I~~ 312 (312)
T COG0549 268 AAGSMGPKVEAAISFVENTGKPAIITS---LENAEAALEGK-AGTVIVP 312 (312)
T ss_pred CCCCccHHHHHHHHHHHcCCCceEECc---HHHHHHHhccC-CCcEecC
Confidence 7888899998644 44466788876 56778889986 6999864
No 86
>KOG2436 consensus Acetylglutamate kinase/acetylglutamate synthase [Amino acid transport and metabolism]
Probab=98.30 E-value=5.1e-06 Score=73.70 Aligned_cols=140 Identities=15% Similarity=0.222 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHCCCeEEEEECCch-HHHhHHHhcc-----CCCCcChHHHHHHHHH----HHHHHHHHHHHHhcCCCeeE
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGN-IFRGASAAGN-----SGLDRSSADYIGMLAT----VMNAIFLQATMESIGIPTRV 71 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~----~~~~~l~~~~l~~~gi~a~~ 71 (219)
.++..++-|+..|.++|||||.|. +.+.+...+. -+++.+..+.++..-+ ..|..++ ..|++.|-.+++
T Consensus 113 sl~s~lafl~h~gl~pIvv~g~~~qin~~l~~~~ie~~y~~~~RvTda~t~q~~~~~~~~E~n~~lv-~nL~~~g~~ar~ 191 (520)
T KOG2436|consen 113 SLASDLAFLHHVGLRPIVVPGTQPQINRLLAERGIEPEYVDGYRVTDAHTLQAAKESVSLEANLNLV-INLSQLGTRARP 191 (520)
T ss_pred HHHHHHHHHhcCCceEEEecCccHHHHHHHHHcCCCcccccceecccHHHHHHhhhcchhhhhhHHH-HHHHHhhceecc
Confidence 467888899999999999999998 4443333332 1334444444443222 2333344 478888888776
Q ss_pred ecccccc--ccc-c--------hH--------HH-HHHHHHHhCCCEEEEeCC----CCCC-ccChHHHHHHHHHhcCCc
Q 027731 72 QTAFRMS--EVA-E--------PY--------IR-RRAVRHLEKGRVVIFAAG----TGNP-FFTTDTAAALRCAEINAE 126 (219)
Q Consensus 72 ~~~~~~~--~~~-~--------~~--------~~-~~~~~~l~~g~ipIv~g~----~g~~-~~~sD~~Aa~lA~~l~Ad 126 (219)
.+....- .+. + .| ++ +++.++++.|.+|++..- .|.. .++.|.+|..+|..|+|+
T Consensus 192 ~s~g~~v~~~f~a~~~~v~d~~~y~~~gei~~vd~d~i~~l~~~G~mp~L~sla~TaSGqvlnvNa~~~a~elA~~L~~~ 271 (520)
T KOG2436|consen 192 SSSGVRVGNFFPADRNGVLDGEDYGLVGEIKKVDVDRIRHLLDAGSMPLLRSLAATASGQVLNVNADEVAGELALALGPD 271 (520)
T ss_pred ccccccccceeecccccccccceeeeecccceechhhhhhhhhCCCchhehhhcccCccceEEeeHHHHhhHHHhccCcc
Confidence 4432111 010 0 01 12 446678899999997752 3433 489999999999999999
Q ss_pred eEEeeeccCccccCCC
Q 027731 127 VVLKATNVDGVYDDNP 142 (219)
Q Consensus 127 ~liiltDV~Gv~~~dP 142 (219)
++++++|+.=+...+|
T Consensus 272 kli~l~d~g~~l~e~g 287 (520)
T KOG2436|consen 272 KLILLMDKGRILKENG 287 (520)
T ss_pred eeEEecccccccccCc
Confidence 9999999833444433
No 87
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=79.13 E-value=2.6 Score=32.52 Aligned_cols=56 Identities=23% Similarity=0.264 Sum_probs=31.7
Q ss_pred eeeccCccccCCCCCCCCCcccccccHHHHhhCCCCCchHHHHHHHHhCCCcEEEEecCCCchHH
Q 027731 130 KATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIA 194 (219)
Q Consensus 130 iltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~ 194 (219)
+.+||||++++. +++=.-.-+|+..+ -..+=...+...++|+++-|..|++...+.
T Consensus 11 li~DVDGvLTDG-------~ly~~~~Gee~KaF--nv~DG~Gik~l~~~Gi~vAIITGr~s~ive 66 (170)
T COG1778 11 LILDVDGVLTDG-------KLYYDENGEEIKAF--NVRDGHGIKLLLKSGIKVAIITGRDSPIVE 66 (170)
T ss_pred EEEeccceeecC-------eEEEcCCCceeeee--eccCcHHHHHHHHcCCeEEEEeCCCCHHHH
Confidence 348999999853 33222121222211 112334556667888888888888765553
No 88
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=76.91 E-value=6.9 Score=30.44 Aligned_cols=60 Identities=18% Similarity=0.204 Sum_probs=35.4
Q ss_pred eeeccCccccCCCC-CCCCCcccccccHHHHhhCCCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcC
Q 027731 130 KATNVDGVYDDNPR-RNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQG 199 (219)
Q Consensus 130 iltDV~Gv~~~dP~-~~~~a~~i~~i~~~e~~~~g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g 199 (219)
+..|+|||++++-- .++++...+..+. -+..+.+.+.+.|+++.|+++.....+...+..
T Consensus 10 ~v~d~dGv~tdg~~~~~~~g~~~~~~~~----------~D~~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~ 70 (169)
T TIGR02726 10 VILDVDGVMTDGRIVINDEGIESRNFDI----------KDGMGVIVLQLCGIDVAIITSKKSGAVRHRAEE 70 (169)
T ss_pred EEEeCceeeECCeEEEcCCCcEEEEEec----------chHHHHHHHHHCCCEEEEEECCCcHHHHHHHHH
Confidence 35799999996421 1122232333321 266677777778888777777666555555543
No 89
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=68.98 E-value=13 Score=31.13 Aligned_cols=33 Identities=30% Similarity=0.383 Sum_probs=26.4
Q ss_pred CCcEEEEecCCCchHHHHhc---CCCCceEEecCCC
Q 027731 179 NIPVVVFNLNQPGNIAKAIQ---GERVGTLIGGTWN 211 (219)
Q Consensus 179 gi~v~I~~g~~~~~i~~~l~---g~~~GT~i~~~~~ 211 (219)
++||.+-+|-.++++.++|. |--+||+|..++.
T Consensus 200 ~~PVlvGSGvt~~Ni~~~l~~ADG~IVGS~~K~~G~ 235 (254)
T PF03437_consen 200 PVPVLVGSGVTPENIAEYLSYADGAIVGSYFKKDGK 235 (254)
T ss_pred CCCEEEecCCCHHHHHHHHHhCCEEEEeeeeeeCCE
Confidence 48999999999999988874 3336999986554
No 90
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=67.16 E-value=16 Score=30.00 Aligned_cols=29 Identities=14% Similarity=0.150 Sum_probs=22.3
Q ss_pred HHHHHHHHhCCCcEEEEecCCCchHHHHh
Q 027731 169 MTAITLCQENNIPVVVFNLNQPGNIAKAI 197 (219)
Q Consensus 169 ~~aa~~a~~~gi~v~I~~g~~~~~i~~~l 197 (219)
.++.+.+.+.|+.+.|+.|+.+..+..++
T Consensus 26 ~~ai~~~~~~G~~~~iaTGR~~~~~~~~~ 54 (272)
T PRK10530 26 LEALARAREAGYKVIIVTGRHHVAIHPFY 54 (272)
T ss_pred HHHHHHHHHCCCEEEEEcCCChHHHHHHH
Confidence 35667778889999999999887765543
No 91
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=66.96 E-value=11 Score=30.13 Aligned_cols=27 Identities=26% Similarity=0.175 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCcEEEEecCCCchHHHH
Q 027731 170 TAITLCQENNIPVVVFNLNQPGNIAKA 196 (219)
Q Consensus 170 ~aa~~a~~~gi~v~I~~g~~~~~i~~~ 196 (219)
++.+.+.+.|+++.|+.|+.+..+..+
T Consensus 27 ~al~~l~~~G~~~~iaTGR~~~~~~~~ 53 (230)
T PRK01158 27 EAIRKAEKLGIPVILATGNVLCFARAA 53 (230)
T ss_pred HHHHHHHHCCCEEEEEcCCchHHHHHH
Confidence 455566778888888888887766544
No 92
>PRK10976 putative hydrolase; Provisional
Probab=63.91 E-value=14 Score=30.37 Aligned_cols=29 Identities=10% Similarity=0.079 Sum_probs=21.5
Q ss_pred HHHHHHHHhCCCcEEEEecCCCchHHHHh
Q 027731 169 MTAITLCQENNIPVVVFNLNQPGNIAKAI 197 (219)
Q Consensus 169 ~~aa~~a~~~gi~v~I~~g~~~~~i~~~l 197 (219)
.++.+.+.+.|+++.|+.|+.+..+..++
T Consensus 25 ~~ai~~l~~~G~~~~iaTGR~~~~~~~~~ 53 (266)
T PRK10976 25 KETLKLLTARGIHFVFATGRHHVDVGQIR 53 (266)
T ss_pred HHHHHHHHHCCCEEEEEcCCChHHHHHHH
Confidence 35566777889998899998887665544
No 93
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=61.83 E-value=20 Score=29.61 Aligned_cols=29 Identities=7% Similarity=0.153 Sum_probs=22.3
Q ss_pred HHHHHHHHhCCCcEEEEecCCCchHHHHh
Q 027731 169 MTAITLCQENNIPVVVFNLNQPGNIAKAI 197 (219)
Q Consensus 169 ~~aa~~a~~~gi~v~I~~g~~~~~i~~~l 197 (219)
.++.+.+.+.|+.+.++.|+.+..+..++
T Consensus 25 ~~ai~~l~~~G~~~~iaTGR~~~~~~~~~ 53 (272)
T PRK15126 25 LSTLARLRERDITLTFATGRHVLEMQHIL 53 (272)
T ss_pred HHHHHHHHHCCCEEEEECCCCHHHHHHHH
Confidence 35666778889999999999887766554
No 94
>PTZ00174 phosphomannomutase; Provisional
Probab=61.40 E-value=14 Score=30.22 Aligned_cols=29 Identities=7% Similarity=0.086 Sum_probs=23.6
Q ss_pred HHHHHHHhCCCcEEEEecCCCchHHHHhc
Q 027731 170 TAITLCQENNIPVVVFNLNQPGNIAKAIQ 198 (219)
Q Consensus 170 ~aa~~a~~~gi~v~I~~g~~~~~i~~~l~ 198 (219)
++.+.+.+.|+.+.|+.|+.+..+.+.+.
T Consensus 29 ~ai~~l~~~Gi~~viaTGR~~~~i~~~l~ 57 (247)
T PTZ00174 29 DTLAKLKSKGFKIGVVGGSDYPKIKEQLG 57 (247)
T ss_pred HHHHHHHHCCCEEEEEcCCCHHHHHHHHh
Confidence 55667788999999999998888877664
No 95
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=59.94 E-value=19 Score=28.51 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=20.4
Q ss_pred HHHHHHHHhCCCcEEEEecCCCchHHHH
Q 027731 169 MTAITLCQENNIPVVVFNLNQPGNIAKA 196 (219)
Q Consensus 169 ~~aa~~a~~~gi~v~I~~g~~~~~i~~~ 196 (219)
.++.+.+.+.|+++.++.|+.+..+..+
T Consensus 24 ~~~i~~l~~~g~~~~~~TGR~~~~~~~~ 51 (215)
T TIGR01487 24 IEAIRKAEKKGIPVSLVTGNTVPFARAL 51 (215)
T ss_pred HHHHHHHHHCCCEEEEEcCCcchhHHHH
Confidence 3455666778888889998888776554
No 96
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=59.83 E-value=27 Score=26.36 Aligned_cols=13 Identities=46% Similarity=0.647 Sum_probs=10.0
Q ss_pred EeeeccCccccCC
Q 027731 129 LKATNVDGVYDDN 141 (219)
Q Consensus 129 iiltDV~Gv~~~d 141 (219)
++++|.||.+..+
T Consensus 3 ~~~~D~Dgtl~~~ 15 (154)
T TIGR01670 3 LLILDVDGVLTDG 15 (154)
T ss_pred EEEEeCceeEEcC
Confidence 3568999988764
No 97
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=58.18 E-value=20 Score=29.47 Aligned_cols=29 Identities=14% Similarity=0.183 Sum_probs=21.8
Q ss_pred HHHHHHHHhCCCcEEEEecCCCchHHHHh
Q 027731 169 MTAITLCQENNIPVVVFNLNQPGNIAKAI 197 (219)
Q Consensus 169 ~~aa~~a~~~gi~v~I~~g~~~~~i~~~l 197 (219)
.++.+.+.+.|+++.|+.|+....+..++
T Consensus 26 ~~ai~~l~~~G~~~~iaTGR~~~~~~~~~ 54 (270)
T PRK10513 26 KQAIAAARAKGVNVVLTTGRPYAGVHRYL 54 (270)
T ss_pred HHHHHHHHHCCCEEEEecCCChHHHHHHH
Confidence 35666778889999999999887765543
No 98
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=55.00 E-value=84 Score=23.24 Aligned_cols=67 Identities=21% Similarity=0.208 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhcCCCeeEecccccccccchHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCC
Q 027731 54 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINA 125 (219)
Q Consensus 54 ~~~l~~~~l~~~gi~a~~~~~~~~~~~~~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~A 125 (219)
|..++++.|++.|..+...... .|- ...+.+.+...++...+.|+.| |......|.+...++...+-
T Consensus 18 n~~~l~~~l~~~G~~v~~~~~v--~Dd-~~~i~~~l~~~~~~~D~VittG--G~g~~~~D~t~~a~~~~~~~ 84 (144)
T PF00994_consen 18 NGPFLAALLEELGIEVIRYGIV--PDD-PDAIKEALRRALDRADLVITTG--GTGPGPDDVTPEALAEAGGR 84 (144)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEE--ESS-HHHHHHHHHHHHHTTSEEEEES--SSSSSTTCHHHHHHHHHSSE
T ss_pred HHHHHHHHHHHcCCeeeEEEEE--CCC-HHHHHHHHHhhhccCCEEEEcC--CcCcccCCcccHHHHHhcCc
Confidence 4556678899999876543211 111 1112234456677788888887 44567789998888887764
No 99
>PF01872 RibD_C: RibD C-terminal domain; InterPro: IPR002734 This domain is found in the C terminus of the bifunctional deaminase-reductase of Escherichia coli, Bacillus subtilis and other bacteria in combination with IPR002125 from INTERPRO that catalyses the second and third steps in the biosynthesis of riboflavin, i.e., the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (deaminase) and the subsequent reduction of the ribosyl side chain (reductase) []. The domain is also present in some HTP reductases from archaea and fungi.; GO: 0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, 0009231 riboflavin biosynthetic process, 0055114 oxidation-reduction process; PDB: 3KY8_B 3KGY_B 2GD9_B 3JTW_B 2XW7_B 2D5N_B 2B3Z_A 3EX8_B 2AZN_A 2P4G_A ....
Probab=53.65 E-value=19 Score=28.35 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHHHh
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIFRG 29 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~~~ 29 (219)
.+.+.+++|+++|.+=|+|+|||.++..
T Consensus 122 dl~~~l~~L~~~g~~~i~v~GG~~l~~~ 149 (200)
T PF01872_consen 122 DLEEALRRLKERGGKDILVEGGGSLNGS 149 (200)
T ss_dssp HHHHHHHHHHHTTTSEEEEEEHHHHHHH
T ss_pred CHHHHHHHHHhcCCCEEEEechHHHHHH
Confidence 3678899999999899999988766543
No 100
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=52.09 E-value=16 Score=30.59 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHCCCeEEEEECC-chHHHh
Q 027731 2 AIAREVASVTRLGIEVAIVVGG-GNIFRG 29 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~Gg-G~~~~~ 29 (219)
+|.++++.+.++ ..+||++|| |++-+.
T Consensus 49 ~I~~~l~~a~~r-~D~vI~tGGLGPT~DD 76 (255)
T COG1058 49 RIVEALREASER-ADVVITTGGLGPTHDD 76 (255)
T ss_pred HHHHHHHHHHhC-CCEEEECCCcCCCccH
Confidence 578889999888 999999988 775443
No 101
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=49.07 E-value=85 Score=25.89 Aligned_cols=40 Identities=15% Similarity=0.077 Sum_probs=26.5
Q ss_pred HHHHHHHHHHCCCeEEEEECCchHH--HhHHHhccCCCCcCh
Q 027731 3 IAREVASVTRLGIEVAIVVGGGNIF--RGASAAGNSGLDRSS 42 (219)
Q Consensus 3 la~~i~~l~~~g~~vviV~GgG~~~--~~~~~~~~~~~~~~~ 42 (219)
-.+.|++|+++|++++++++..... .....+...|++.+.
T Consensus 26 a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~ 67 (257)
T TIGR01458 26 SQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISE 67 (257)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCCH
Confidence 3567889999999999999754432 233344445676543
No 102
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=46.88 E-value=41 Score=27.81 Aligned_cols=53 Identities=17% Similarity=0.195 Sum_probs=34.2
Q ss_pred ceEEeeeccCccccCCCCCCCCCcccccccHHHHhhCCCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHh
Q 027731 126 EVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAI 197 (219)
Q Consensus 126 d~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l 197 (219)
+..++++|+||=+-.+. +. ++.. -.++.+.+.+.|+++.|+.|+....+..++
T Consensus 6 ~~~lI~~DlDGTLL~~~------~~---i~~~----------~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~ 58 (271)
T PRK03669 6 DPLLIFTDLDGTLLDSH------TY---DWQP----------AAPWLTRLREAQVPVILCSSKTAAEMLPLQ 58 (271)
T ss_pred CCeEEEEeCccCCcCCC------Cc---CcHH----------HHHHHHHHHHcCCeEEEEcCCCHHHHHHHH
Confidence 34677899999544221 11 2111 225566778889999999999887776543
No 103
>PLN02887 hydrolase family protein
Probab=41.19 E-value=59 Score=30.55 Aligned_cols=29 Identities=10% Similarity=0.123 Sum_probs=23.2
Q ss_pred HHHHHHHHhCCCcEEEEecCCCchHHHHh
Q 027731 169 MTAITLCQENNIPVVVFNLNQPGNIAKAI 197 (219)
Q Consensus 169 ~~aa~~a~~~gi~v~I~~g~~~~~i~~~l 197 (219)
.++.+.+.+.|+.+.|+.|+....+.+++
T Consensus 331 ~eAI~kl~ekGi~~vIATGR~~~~i~~~l 359 (580)
T PLN02887 331 AKALKEALSRGVKVVIATGKARPAVIDIL 359 (580)
T ss_pred HHHHHHHHHCCCeEEEEcCCCHHHHHHHH
Confidence 46677888899999999999887776544
No 104
>PLN03017 trehalose-phosphatase
Probab=40.34 E-value=97 Score=27.36 Aligned_cols=66 Identities=8% Similarity=0.115 Sum_probs=41.4
Q ss_pred HHHHHHHHhcCCceEEeeeccCcccc---CCCCCCCCCcccccccHHHHhhCCCCCchHHHHHHHHhCCCcEEEEecCCC
Q 027731 114 TAAALRCAEINAEVVLKATNVDGVYD---DNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQP 190 (219)
Q Consensus 114 ~~Aa~lA~~l~Ad~liiltDV~Gv~~---~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~aa~~a~~~gi~v~I~~g~~~ 190 (219)
...-.++...+.+++++++|.||=+. .+|.. . .++.+ -.++.+.+. .++++.|++|+..
T Consensus 98 ~~~~~~~~~~~~k~~llflD~DGTL~Piv~~p~~----a---~i~~~----------~~~aL~~La-~~~~vaIvSGR~~ 159 (366)
T PLN03017 98 EMFEQIMEASRGKQIVMFLDYDGTLSPIVDDPDK----A---FMSSK----------MRRTVKKLA-KCFPTAIVTGRCI 159 (366)
T ss_pred HHHHHHHHHhcCCCeEEEEecCCcCcCCcCCccc----c---cCCHH----------HHHHHHHHh-cCCcEEEEeCCCH
Confidence 34455666677788999999999776 33321 1 12211 112233333 6788999999998
Q ss_pred chHHHHh
Q 027731 191 GNIAKAI 197 (219)
Q Consensus 191 ~~i~~~l 197 (219)
..+.+++
T Consensus 160 ~~l~~~~ 166 (366)
T PLN03017 160 DKVYNFV 166 (366)
T ss_pred HHHHHhh
Confidence 8887664
No 105
>PRK03673 hypothetical protein; Provisional
Probab=39.34 E-value=2.1e+02 Score=25.58 Aligned_cols=71 Identities=14% Similarity=0.146 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCCCeeEecccccccccchHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCceEEe
Q 027731 54 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLK 130 (219)
Q Consensus 54 ~~~l~~~~l~~~gi~a~~~~~~~~~~~~~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~lii 130 (219)
|+..++..|.+.|+.+....-. +|..+ .+...+...++...+.|++| |..-..-|.+...+|..++-. |++
T Consensus 22 N~~~la~~L~~~G~~v~~~~~v--~D~~~-~i~~~l~~a~~~~DlVI~tG--GlGpt~dD~t~~avA~a~g~~-L~~ 92 (396)
T PRK03673 22 NAAWLADFFFHQGLPLSRRNTV--GDNLD-ALVAILRERSQHADVLIVNG--GLGPTSDDLSALAAATAAGEG-LVL 92 (396)
T ss_pred HHHHHHHHHHHCCCEEEEEEEc--CCCHH-HHHHHHHHHhccCCEEEEcC--CCCCCCcccHHHHHHHHcCCC-cee
Confidence 5556678899999987543211 12111 12233445677778888887 445567888888889988864 443
No 106
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=38.95 E-value=49 Score=22.70 Aligned_cols=27 Identities=7% Similarity=-0.038 Sum_probs=18.4
Q ss_pred CEEEEeCCCCCCccChHHHHHHHHHhcCCce
Q 027731 97 RVVIFAAGTGNPFFTTDTAAALRCAEINAEV 127 (219)
Q Consensus 97 ~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~ 127 (219)
.||+++|- .++++.+|..+|..+++.-
T Consensus 51 vIplL~GH----~GGan~lA~~iA~~lga~~ 77 (84)
T PF11760_consen 51 VIPLLGGH----RGGANELARQIAELLGAQP 77 (84)
T ss_dssp EEEEE-TT----TT-HHHHHHHHHHHTT-EE
T ss_pred EEEeccCC----cchHHHHHHHHHHHhCCEE
Confidence 35666652 3568999999999999963
No 107
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=38.44 E-value=33 Score=26.83 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHCCC--eEEEEECC-ch
Q 027731 2 AIAREVASVTRLGI--EVAIVVGG-GN 25 (219)
Q Consensus 2 ~la~~i~~l~~~g~--~vviV~Gg-G~ 25 (219)
.+++.+.+|+++|+ .+|+-|+| |.
T Consensus 52 av~~a~~~L~~~Gf~PDvI~~H~GWGe 78 (171)
T PF12000_consen 52 AVARAARQLRAQGFVPDVIIAHPGWGE 78 (171)
T ss_pred HHHHHHHHHHHcCCCCCEEEEcCCcch
Confidence 57888899999998 99999987 64
No 108
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=38.07 E-value=42 Score=24.77 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=16.0
Q ss_pred HHHHHHHHHHCCCeEEEEEC
Q 027731 3 IAREVASVTRLGIEVAIVVG 22 (219)
Q Consensus 3 la~~i~~l~~~g~~vviV~G 22 (219)
..+.++++++.|+++++++|
T Consensus 29 ~ie~L~~l~~~G~~IiiaTG 48 (126)
T TIGR01689 29 VIEKLRHYKALGFEIVISSS 48 (126)
T ss_pred HHHHHHHHHHCCCEEEEECC
Confidence 45667777889999999985
No 109
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=37.87 E-value=36 Score=26.00 Aligned_cols=19 Identities=16% Similarity=0.440 Sum_probs=17.2
Q ss_pred HHHHHHHHHHCCCeEEEEE
Q 027731 3 IAREVASVTRLGIEVAIVV 21 (219)
Q Consensus 3 la~~i~~l~~~g~~vviV~ 21 (219)
+.+.|+++++.||++|||+
T Consensus 34 v~~~L~~l~~~Gy~IvIvT 52 (159)
T PF08645_consen 34 VPEALRELHKKGYKIVIVT 52 (159)
T ss_dssp HHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHhcCCeEEEEe
Confidence 5678999999999999999
No 110
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=37.70 E-value=36 Score=27.44 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=16.2
Q ss_pred HHHHHHHHCCCeEEEEECCch
Q 027731 5 REVASVTRLGIEVAIVVGGGN 25 (219)
Q Consensus 5 ~~i~~l~~~g~~vviV~GgG~ 25 (219)
+-++.+++.|++++||+||-.
T Consensus 84 elv~~lk~~G~~v~iiSgg~~ 104 (212)
T COG0560 84 ELVAALKAAGAKVVIISGGFT 104 (212)
T ss_pred HHHHHHHHCCCEEEEEcCChH
Confidence 345677788999999997654
No 111
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=36.42 E-value=47 Score=23.09 Aligned_cols=22 Identities=14% Similarity=0.357 Sum_probs=18.0
Q ss_pred HHHHHHHHHHCCCeEEEEECCc
Q 027731 3 IAREVASVTRLGIEVAIVVGGG 24 (219)
Q Consensus 3 la~~i~~l~~~g~~vviV~GgG 24 (219)
+.+.+++|+++|+++++|+|+.
T Consensus 29 ~~~~l~~l~~~g~~i~ivS~~~ 50 (139)
T cd01427 29 VKEALKELKEKGIKLALATNKS 50 (139)
T ss_pred HHHHHHHHHHCCCeEEEEeCch
Confidence 5677888999999999999654
No 112
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=35.93 E-value=1e+02 Score=25.56 Aligned_cols=84 Identities=19% Similarity=0.171 Sum_probs=55.4
Q ss_pred HHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhCCCCCch
Q 027731 89 AVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMD 168 (219)
Q Consensus 89 ~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k 168 (219)
+.+.|....|.| .-|++-|.-....|+.+|||.+.+.| |-|..- ...-...|+.. -
T Consensus 118 ~i~~L~~~gIrV------SLFidP~~~qi~~A~~~GAd~VELhT---G~yA~a---------~~~~~~~el~~------~ 173 (239)
T PRK05265 118 AIARLKDAGIRV------SLFIDPDPEQIEAAAEVGADRIELHT---GPYADA---------KTEAEAAELER------I 173 (239)
T ss_pred HHHHHHHCCCEE------EEEeCCCHHHHHHHHHhCcCEEEEec---hhhhcC---------CCcchHHHHHH------H
Confidence 344455444443 23788999999999999999999998 444321 01111233321 2
Q ss_pred HHHHHHHHhCCCcEEEEecCCCchHHHH
Q 027731 169 MTAITLCQENNIPVVVFNLNQPGNIAKA 196 (219)
Q Consensus 169 ~~aa~~a~~~gi~v~I~~g~~~~~i~~~ 196 (219)
..+++.|.+.|+.|.--.|.+.+++..+
T Consensus 174 ~~aa~~a~~lGL~VnAGHgLny~Nv~~i 201 (239)
T PRK05265 174 AKAAKLAASLGLGVNAGHGLNYHNVKPI 201 (239)
T ss_pred HHHHHHHHHcCCEEecCCCCCHHhHHHH
Confidence 4567888888998888888888877654
No 113
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=35.27 E-value=51 Score=22.04 Aligned_cols=27 Identities=22% Similarity=0.211 Sum_probs=24.3
Q ss_pred cChHHHHHHHHHhcCCc-eEEeeeccCc
Q 027731 110 FTTDTAAALRCAEINAE-VVLKATNVDG 136 (219)
Q Consensus 110 ~~sD~~Aa~lA~~l~Ad-~liiltDV~G 136 (219)
.+.|.+...+..+|..+ .++-+||..|
T Consensus 20 ~s~dev~~~v~~Al~~~~~~l~LtD~kG 47 (74)
T PF11305_consen 20 QSADEVEAAVTDALADGSGVLTLTDEKG 47 (74)
T ss_pred CCHHHHHHHHHHHHhCCCceEEEEeCCC
Confidence 58999999999999988 8888999876
No 114
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=34.81 E-value=1.5e+02 Score=20.54 Aligned_cols=40 Identities=10% Similarity=0.099 Sum_probs=23.9
Q ss_pred HHHHHHHHHHCCCeEEEEECCchHH--HhHHHhccCCCCcCh
Q 027731 3 IAREVASVTRLGIEVAIVVGGGNIF--RGASAAGNSGLDRSS 42 (219)
Q Consensus 3 la~~i~~l~~~g~~vviV~GgG~~~--~~~~~~~~~~~~~~~ 42 (219)
..+.|..|++.|.++++|+=.++.. .....+...|++.+.
T Consensus 19 a~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~ 60 (101)
T PF13344_consen 19 AVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDE 60 (101)
T ss_dssp HHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--G
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCc
Confidence 3577889999999999999654322 223344445565433
No 115
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=34.49 E-value=44 Score=26.02 Aligned_cols=13 Identities=46% Similarity=0.810 Sum_probs=10.3
Q ss_pred EeeeccCccccCC
Q 027731 129 LKATNVDGVYDDN 141 (219)
Q Consensus 129 iiltDV~Gv~~~d 141 (219)
.+++|+||.++.+
T Consensus 23 li~~D~Dgtl~~~ 35 (183)
T PRK09484 23 LLICDVDGVFSDG 35 (183)
T ss_pred EEEEcCCeeeecC
Confidence 5678999998853
No 116
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=34.36 E-value=45 Score=25.46 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=16.6
Q ss_pred HHHHHHHHHCCCeEEEEECC
Q 027731 4 AREVASVTRLGIEVAIVVGG 23 (219)
Q Consensus 4 a~~i~~l~~~g~~vviV~Gg 23 (219)
.+.|+.++++|++++||+|+
T Consensus 95 ~e~i~~~~~~~~~v~IvS~~ 114 (192)
T PF12710_consen 95 MELIRELKDNGIKVVIVSGS 114 (192)
T ss_dssp HHHHHHHHHTTSEEEEEEEE
T ss_pred HHHHHHHHHCCCEEEEECCC
Confidence 36778888999999999964
No 117
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=33.64 E-value=2.2e+02 Score=21.93 Aligned_cols=68 Identities=21% Similarity=0.195 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCCCeeEecccccccccchHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCc
Q 027731 54 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAE 126 (219)
Q Consensus 54 ~~~l~~~~l~~~gi~a~~~~~~~~~~~~~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad 126 (219)
|...++..|.+.|+.+...... .|-. ..+.+.+.++++...+.|++| |.....-|.+...++..++-+
T Consensus 20 n~~~l~~~L~~~G~~v~~~~~v--~Dd~-~~I~~~l~~~~~~~dlVIttG--G~G~t~~D~t~ea~~~~~~~~ 87 (170)
T cd00885 20 NAAFLAKELAELGIEVYRVTVV--GDDE-DRIAEALRRASERADLVITTG--GLGPTHDDLTREAVAKAFGRP 87 (170)
T ss_pred HHHHHHHHHHHCCCEEEEEEEe--CCCH-HHHHHHHHHHHhCCCEEEECC--CCCCCCCChHHHHHHHHhCCC
Confidence 4455677888999887643211 1111 112233445566667888887 455677889999999998854
No 118
>PRK01215 competence damage-inducible protein A; Provisional
Probab=33.39 E-value=2.9e+02 Score=23.11 Aligned_cols=68 Identities=18% Similarity=0.164 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhcCCCeeEecccccccccchHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCc
Q 027731 54 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAE 126 (219)
Q Consensus 54 ~~~l~~~~l~~~gi~a~~~~~~~~~~~~~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad 126 (219)
|...+++.|.+.|+.+...... .|-.+ .+.+.+.++++...+.|++| |.....-|.+...+|..++-+
T Consensus 24 n~~~l~~~L~~~G~~v~~~~~v--~Dd~~-~I~~~l~~a~~~~DlVIttG--G~g~t~dD~t~eaia~~~g~~ 91 (264)
T PRK01215 24 NASWIARRLTYLGYTVRRITVV--MDDIE-EIVSAFREAIDRADVVVSTG--GLGPTYDDKTNEGFAKALGVE 91 (264)
T ss_pred hHHHHHHHHHHCCCeEEEEEEe--CCCHH-HHHHHHHHHhcCCCEEEEeC--CCcCChhhhHHHHHHHHhCCC
Confidence 4455677888999987643211 11111 12233445666678888887 445567888888888888854
No 119
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=33.30 E-value=1.4e+02 Score=24.95 Aligned_cols=44 Identities=23% Similarity=0.285 Sum_probs=31.0
Q ss_pred chHHHHHHHHh--CCCcEEEEecCCCchHHHHhc---CCCCceEEecCC
Q 027731 167 MDMTAITLCQE--NNIPVVVFNLNQPGNIAKAIQ---GERVGTLIGGTW 210 (219)
Q Consensus 167 ~k~~aa~~a~~--~gi~v~I~~g~~~~~i~~~l~---g~~~GT~i~~~~ 210 (219)
.+.+-++...+ ...|+++.+|-.++++.+++. |-.+||.|..++
T Consensus 186 ~d~~~l~~vr~~~~~~PvllggGvt~eNv~e~l~~adGviVgS~~K~~G 234 (257)
T TIGR00259 186 VDLELLKLAKETVKDTPVLAGSGVNLENVEELLSIADGVIVATTIKKDG 234 (257)
T ss_pred CCHHHHHHHHhccCCCeEEEECCCCHHHHHHHHhhCCEEEECCCcccCC
Confidence 45555554433 357999999999999998876 333688887544
No 120
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=33.09 E-value=1.2e+02 Score=22.33 Aligned_cols=64 Identities=17% Similarity=0.084 Sum_probs=38.1
Q ss_pred cChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhCCCCCchHHHHHHHHhCCCcEEEEe
Q 027731 110 FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFN 186 (219)
Q Consensus 110 ~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~aa~~a~~~gi~v~I~~ 186 (219)
...=..-+..|..++.|-.+|+|- +|++--.-+ .++.++...+ -.=-.-++.|.++||+.++|.
T Consensus 19 ~ya~f~~A~~a~smg~dV~iF~t~-dG~~l~~K~---~~ekik~~~~---------~~l~~~~~~a~e~GVk~yvCe 82 (120)
T COG2044 19 AYAPFVMATAAASMGYDVTIFFTM-DGVTLVKKK---VAEKIKHPNF---------PPLEELIKQAIEAGVKIYVCE 82 (120)
T ss_pred HHhHHHHHHHHHhCCCceEEEEEe-ccceeeeec---chhhhcCCCC---------CCHHHHHHHHHHcCCEEEEEc
Confidence 344455678899999998888874 666532100 1222222111 112244678899999988885
No 121
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=32.83 E-value=82 Score=26.16 Aligned_cols=58 Identities=9% Similarity=0.114 Sum_probs=34.9
Q ss_pred eEEeeeccCccccCCCCCCCCCcccccccHHHHhhCCCCCchHHHHHHHHh-CCCcEEEEecCCCchHHHHhc
Q 027731 127 VVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQE-NNIPVVVFNLNQPGNIAKAIQ 198 (219)
Q Consensus 127 ~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~aa~~a~~-~gi~v~I~~g~~~~~i~~~l~ 198 (219)
.++|++|.||=+... ..+|+... ++.. -.++.+.+.+ .|+.+.|++|+.+..+.+++.
T Consensus 14 ~~li~~D~DGTLl~~-~~~p~~~~---i~~~----------~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~ 72 (266)
T PRK10187 14 NYAWFFDLDGTLAEI-KPHPDQVV---VPDN----------ILQGLQLLATANDGALALISGRSMVELDALAK 72 (266)
T ss_pred CEEEEEecCCCCCCC-CCCccccc---CCHH----------HHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcC
Confidence 477789999966531 11222222 2211 1223444454 689999999999988877664
No 122
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=32.65 E-value=67 Score=21.08 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=14.8
Q ss_pred HHHHHHHHHHCCCeEEEEECC
Q 027731 3 IAREVASVTRLGIEVAIVVGG 23 (219)
Q Consensus 3 la~~i~~l~~~g~~vviV~Gg 23 (219)
+.+.+.+++++--.++|||||
T Consensus 20 i~~~Ld~~~~~~~~~~lvhGg 40 (71)
T PF10686_consen 20 IWAALDKVHARHPDMVLVHGG 40 (71)
T ss_pred HHHHHHHHHHhCCCEEEEECC
Confidence 455666666666678899965
No 123
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=32.19 E-value=36 Score=19.87 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=11.4
Q ss_pred HHHHHHHHHHCCCeEEEEEC
Q 027731 3 IAREVASVTRLGIEVAIVVG 22 (219)
Q Consensus 3 la~~i~~l~~~g~~vviV~G 22 (219)
|.+-|..+ +-.++++|||
T Consensus 23 L~~~i~~~--~p~~vilVHG 40 (43)
T PF07521_consen 23 LLEFIEQL--NPRKVILVHG 40 (43)
T ss_dssp HHHHHHHH--CSSEEEEESS
T ss_pred HHHHHHhc--CCCEEEEecC
Confidence 34444555 2379999996
No 124
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=32.01 E-value=68 Score=24.12 Aligned_cols=19 Identities=37% Similarity=0.576 Sum_probs=16.1
Q ss_pred HHHHHHHCCCeEEEEECCc
Q 027731 6 EVASVTRLGIEVAIVVGGG 24 (219)
Q Consensus 6 ~i~~l~~~g~~vviV~GgG 24 (219)
.|++|+++|+++.|++|..
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~ 54 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRK 54 (154)
T ss_pred HHHHHHHCCCEEEEEECCC
Confidence 4888999999999999654
No 125
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=31.96 E-value=60 Score=24.96 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=17.2
Q ss_pred HHHHHHHHHHCCCeEEEEECC
Q 027731 3 IAREVASVTRLGIEVAIVVGG 23 (219)
Q Consensus 3 la~~i~~l~~~g~~vviV~Gg 23 (219)
+.+.++.|+++|++++||+++
T Consensus 85 ~~e~l~~l~~~g~~~~IvS~~ 105 (201)
T TIGR01491 85 AEELVRWLKEKGLKTAIVSGG 105 (201)
T ss_pred HHHHHHHHHHCCCEEEEEeCC
Confidence 456788888899999999964
No 126
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=31.69 E-value=3.1e+02 Score=22.95 Aligned_cols=71 Identities=20% Similarity=0.213 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhcCCCeeEecccccccccchHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCceEEe
Q 027731 54 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLK 130 (219)
Q Consensus 54 ~~~l~~~~l~~~gi~a~~~~~~~~~~~~~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~lii 130 (219)
|+..+++.|.++|++.....-. +|-.+ .+.+.+..++++-.+.|++|. ..--.-|.++-.+|++++-+ |++
T Consensus 22 Na~~la~~L~~~G~~v~~~~~V--gD~~~-~I~~~l~~a~~r~D~vI~tGG--LGPT~DDiT~e~vAka~g~~-lv~ 92 (255)
T COG1058 22 NAAFLADELTELGVDLARITTV--GDNPD-RIVEALREASERADVVITTGG--LGPTHDDLTAEAVAKALGRP-LVL 92 (255)
T ss_pred hHHHHHHHHHhcCceEEEEEec--CCCHH-HHHHHHHHHHhCCCEEEECCC--cCCCccHhHHHHHHHHhCCC-ccc
Confidence 4455678899999997754322 22111 122334456677778888874 33346788888999999865 444
No 127
>PLN02423 phosphomannomutase
Probab=31.63 E-value=85 Score=25.70 Aligned_cols=52 Identities=15% Similarity=0.164 Sum_probs=31.8
Q ss_pred eEEeeeccCccccCCCCCCCCCcccccccHHHHhhCCCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhc
Q 027731 127 VVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQ 198 (219)
Q Consensus 127 ~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~ 198 (219)
++++++|.||=+-.+ + + +++.. -.++.+.+.+. +.+.+++|+....+.+.+.
T Consensus 7 ~~i~~~D~DGTLl~~-----~-~---~i~~~----------~~~ai~~l~~~-i~fviaTGR~~~~~~~~~~ 58 (245)
T PLN02423 7 GVIALFDVDGTLTAP-----R-K---EATPE----------MLEFMKELRKV-VTVGVVGGSDLSKISEQLG 58 (245)
T ss_pred ceEEEEeccCCCcCC-----C-C---cCCHH----------HHHHHHHHHhC-CEEEEECCcCHHHHHHHhc
Confidence 578889999954422 1 1 22221 12445555555 8899999997777765554
No 128
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=31.27 E-value=2.2e+02 Score=21.11 Aligned_cols=65 Identities=17% Similarity=0.123 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhcCCCeeEecccccccccchHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhc
Q 027731 54 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEI 123 (219)
Q Consensus 54 ~~~l~~~~l~~~gi~a~~~~~~~~~~~~~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l 123 (219)
|..++.+.|++.|..+....... |-. ..+.+.+.++++.-.+.|++| |.....-|.+...++...
T Consensus 28 n~~~l~~~l~~~G~~v~~~~~v~--Dd~-~~i~~~l~~~~~~~DliIttG--G~g~g~~D~t~~ai~~~g 92 (144)
T TIGR00177 28 NGPLLAALLEEAGFNVSRLGIVP--DDP-EEIREILRKAVDEADVVLTTG--GTGVGPRDVTPEALEELG 92 (144)
T ss_pred cHHHHHHHHHHCCCeEEEEeecC--CCH-HHHHHHHHHHHhCCCEEEECC--CCCCCCCccHHHHHHHhC
Confidence 44556778889998876432111 111 112233445566667888887 445667888888888765
No 129
>PRK10444 UMP phosphatase; Provisional
Probab=30.83 E-value=2.5e+02 Score=23.04 Aligned_cols=39 Identities=13% Similarity=0.127 Sum_probs=26.2
Q ss_pred HHHHHHHHHHCCCeEEEEECCchHH--HhHHHhccCCCCcC
Q 027731 3 IAREVASVTRLGIEVAIVVGGGNIF--RGASAAGNSGLDRS 41 (219)
Q Consensus 3 la~~i~~l~~~g~~vviV~GgG~~~--~~~~~~~~~~~~~~ 41 (219)
..+.|..|+++|.+++++++.+... ....+++..|++..
T Consensus 22 a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~ 62 (248)
T PRK10444 22 AAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVP 62 (248)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCC
Confidence 3567888999999999999776522 22344544567543
No 130
>PRK10628 LigB family dioxygenase; Provisional
Probab=30.01 E-value=44 Score=27.79 Aligned_cols=29 Identities=21% Similarity=0.472 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHHHhHHHh
Q 027731 2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAA 33 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~ 33 (219)
++-+.++.|+++| |+|.|+|++.|-+..+
T Consensus 129 ~lG~aL~~LR~~g---vLIigSG~~~HNL~~~ 157 (246)
T PRK10628 129 EMGRKLAALRDEG---IMLVASGNVVHNLRTV 157 (246)
T ss_pred HHHHHHHhhccCC---EEEEecCccccchhhh
Confidence 4678889998876 5666788877665544
No 131
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=29.56 E-value=3.9e+02 Score=23.93 Aligned_cols=71 Identities=23% Similarity=0.192 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhcCCCeeEecccccccccchHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCceEEee
Q 027731 54 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKA 131 (219)
Q Consensus 54 ~~~l~~~~l~~~gi~a~~~~~~~~~~~~~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~liil 131 (219)
|..++..++++.|..+..+. .-.++ ...+.+.+.+.++...+.|+.| |...++.|.+-..+..++| + +.|+
T Consensus 204 N~~~l~a~l~~~G~e~~~~g-iv~Dd--~~~l~~~i~~a~~~~DviItsG--G~SvG~~D~v~~~l~~~lG-~-v~~~ 274 (404)
T COG0303 204 NSYMLAALLERAGGEVVDLG-IVPDD--PEALREAIEKALSEADVIITSG--GVSVGDADYVKAALERELG-E-VLFH 274 (404)
T ss_pred CHHHHHHHHHHcCCceeecc-ccCCC--HHHHHHHHHHhhhcCCEEEEeC--CccCcchHhHHHHHHhcCC-c-EEEE
Confidence 45667788888988765321 11111 1112233445666677878887 5567889999999987788 4 5554
No 132
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=27.72 E-value=1.1e+02 Score=24.05 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=16.9
Q ss_pred HHHHHHHHHHCCCeEEEEECC
Q 027731 3 IAREVASVTRLGIEVAIVVGG 23 (219)
Q Consensus 3 la~~i~~l~~~g~~vviV~Gg 23 (219)
+.+.+.+++++|+++.||++|
T Consensus 90 ~~~~l~~l~~~g~~~~IvS~~ 110 (219)
T TIGR00338 90 AEELVKTLKEKGYKVAVISGG 110 (219)
T ss_pred HHHHHHHHHHCCCEEEEECCC
Confidence 456788888899999999953
No 133
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=27.63 E-value=77 Score=24.10 Aligned_cols=21 Identities=10% Similarity=0.227 Sum_probs=17.6
Q ss_pred HHHHHHHHHHCCCeEEEEECC
Q 027731 3 IAREVASVTRLGIEVAIVVGG 23 (219)
Q Consensus 3 la~~i~~l~~~g~~vviV~Gg 23 (219)
.++.+.+++++|+++++++|-
T Consensus 32 ~~~a~~~l~~~G~~ivy~TGR 52 (157)
T smart00775 32 VAKLYRDIQNNGYKILYLTAR 52 (157)
T ss_pred HHHHHHHHHHcCCeEEEEcCC
Confidence 467788899999999999963
No 134
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=27.52 E-value=1.7e+02 Score=24.15 Aligned_cols=73 Identities=21% Similarity=0.124 Sum_probs=49.8
Q ss_pred CccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhCCCCCchHHHHHHHHhCCCcEEEEec
Q 027731 108 PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNL 187 (219)
Q Consensus 108 ~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~aa~~a~~~gi~v~I~~g 187 (219)
-|++-|.-....|+.+|||.+.+.| |-|..-. ... +. ..|+.. -..+++.|.+.|+.|.--.|
T Consensus 128 LFiDPd~~qi~~A~~~GAd~VELhT---G~Ya~a~---~~~----~~-~~el~~------i~~aa~~a~~~GL~VnAGHg 190 (234)
T cd00003 128 LFIDPDPEQIEAAKEVGADRVELHT---GPYANAY---DKA----ER-EAELER------IAKAAKLARELGLGVNAGHG 190 (234)
T ss_pred EEeCCCHHHHHHHHHhCcCEEEEec---hhhhcCC---Cch----hH-HHHHHH------HHHHHHHHHHcCCEEecCCC
Confidence 4789999999999999999999998 4453211 000 00 112221 24667888888998888888
Q ss_pred CCCchHHHHh
Q 027731 188 NQPGNIAKAI 197 (219)
Q Consensus 188 ~~~~~i~~~l 197 (219)
.+.+++..+.
T Consensus 191 Lny~Nv~~i~ 200 (234)
T cd00003 191 LNYENVKPIA 200 (234)
T ss_pred CCHHHHHHHH
Confidence 8887776554
No 135
>PF13511 DUF4124: Domain of unknown function (DUF4124)
Probab=27.44 E-value=61 Score=20.02 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=18.0
Q ss_pred HHHhcCCceEEeeeccCc--cccCCCC
Q 027731 119 RCAEINAEVVLKATNVDG--VYDDNPR 143 (219)
Q Consensus 119 lA~~l~Ad~liiltDV~G--v~~~dP~ 143 (219)
++...-+..+.-|+|.+| +|++.|.
T Consensus 6 l~~~a~aa~vYk~~D~~G~v~ysd~P~ 32 (60)
T PF13511_consen 6 LAASAAAAEVYKWVDENGVVHYSDTPP 32 (60)
T ss_pred HhHHHhhccEEEEECCCCCEEECccCC
Confidence 344444457999999999 5888775
No 136
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=27.39 E-value=1.3e+02 Score=25.82 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=19.4
Q ss_pred HHHHHHHHHHCCCeEEEEECCch
Q 027731 3 IAREVASVTRLGIEVAIVVGGGN 25 (219)
Q Consensus 3 la~~i~~l~~~g~~vviV~GgG~ 25 (219)
+.+.+.+|++.|++++|+++++.
T Consensus 151 V~EaL~~LkekGikLaIaTS~~R 173 (301)
T TIGR01684 151 IYDSLTELKKRGCILVLWSYGDR 173 (301)
T ss_pred HHHHHHHHHHCCCEEEEEECCCH
Confidence 56788999999999999997653
No 137
>PRK03670 competence damage-inducible protein A; Provisional
Probab=26.42 E-value=3.8e+02 Score=22.26 Aligned_cols=68 Identities=16% Similarity=0.199 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhcCCCeeEecccccccccchHHHHHHHHHHhC-CCEEEEeCCCCCCccChHHHHHHHHHhcCCc
Q 027731 54 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEK-GRVVIFAAGTGNPFFTTDTAAALRCAEINAE 126 (219)
Q Consensus 54 ~~~l~~~~l~~~gi~a~~~~~~~~~~~~~~~~~~~~~~~l~~-g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad 126 (219)
|...++..|.+.|+.+...... .|-. ..+.+.+.++++. ..+.|++| |.....-|.+...+|.+++-+
T Consensus 21 N~~~la~~L~~~G~~v~~~~iV--~Dd~-~~I~~~l~~a~~~~~DlVIttG--GlGpt~dD~T~eava~a~g~~ 89 (252)
T PRK03670 21 NSAFIAQKLTEKGYWVRRITTV--GDDV-EEIKSVVLEILSRKPEVLVISG--GLGPTHDDVTMLAVAEALGRE 89 (252)
T ss_pred hHHHHHHHHHHCCCEEEEEEEc--CCCH-HHHHHHHHHHhhCCCCEEEECC--CccCCCCCchHHHHHHHhCCC
Confidence 4455677888999986542211 1111 1122233345554 47888887 344456677777777777753
No 138
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=25.83 E-value=1.6e+02 Score=24.82 Aligned_cols=74 Identities=19% Similarity=0.288 Sum_probs=34.6
Q ss_pred HHHHHHHHhcC-CCeeEecccccccccchHHHHHHHHHHhCCCEE---EEeCC-------CCCCccChHHHHH---HHHH
Q 027731 56 IFLQATMESIG-IPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVV---IFAAG-------TGNPFFTTDTAAA---LRCA 121 (219)
Q Consensus 56 ~l~~~~l~~~g-i~a~~~~~~~~~~~~~~~~~~~~~~~l~~g~ip---Iv~g~-------~g~~~~~sD~~Aa---~lA~ 121 (219)
..+++.|.+++ .+ +.+++.....-..+...++..+.|.+..+| |+.|| .|..-+.++.-+. .+-.
T Consensus 88 e~va~~l~~~~~~~-vV~DPVmvaksG~~Ll~~~a~~~l~~~LlP~a~vvTPNl~EA~~L~g~~~i~~~~d~~~a~~~i~ 166 (263)
T COG0351 88 EVVAEKLKKYGIGP-VVLDPVMVAKSGDPLLDEEAVEALREELLPLATVVTPNLPEAEALSGLPKIKTEEDMKEAAKLLH 166 (263)
T ss_pred HHHHHHHHhcCCCc-EEECceEEEcCCCcccChHHHHHHHHHhhccCeEecCCHHHHHHHcCCCccCCHHHHHHHHHHHH
Confidence 44678888998 44 435555432222222223333344434444 55665 2321233333222 3344
Q ss_pred hcCCceEEe
Q 027731 122 EINAEVVLK 130 (219)
Q Consensus 122 ~l~Ad~lii 130 (219)
.++++.+++
T Consensus 167 ~~g~~~Vli 175 (263)
T COG0351 167 ELGAKAVLI 175 (263)
T ss_pred HhCCCEEEE
Confidence 557875554
No 139
>smart00463 SMR Small MutS-related domain.
Probab=25.71 E-value=1.1e+02 Score=20.09 Aligned_cols=23 Identities=17% Similarity=0.462 Sum_probs=16.9
Q ss_pred HHHHHHHHHHCCC--eEEEEECCch
Q 027731 3 IAREVASVTRLGI--EVAIVVGGGN 25 (219)
Q Consensus 3 la~~i~~l~~~g~--~vviV~GgG~ 25 (219)
+-+.|.++++.+. .+.||||-|.
T Consensus 18 l~~~l~~~~~~~~~~~~~II~G~G~ 42 (80)
T smart00463 18 LDKFLNNARLKGLEQKLVIITGKGK 42 (80)
T ss_pred HHHHHHHHHHcCCCceEEEEEcccC
Confidence 4456777777774 7889998774
No 140
>PLN02151 trehalose-phosphatase
Probab=25.65 E-value=1.8e+02 Score=25.58 Aligned_cols=66 Identities=8% Similarity=0.162 Sum_probs=39.0
Q ss_pred HHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhCCCCCchH-HHHHHHHhCCCcEEEEecCCCchHHH
Q 027731 117 ALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDM-TAITLCQENNIPVVVFNLNQPGNIAK 195 (219)
Q Consensus 117 a~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~-~aa~~a~~~gi~v~I~~g~~~~~i~~ 195 (219)
-.+....+++++.++.|.||=+..- ..+|+.-. ++ ... .+.+.+. .+.++.|++|+..+.+.+
T Consensus 88 ~~~~~~~~~~~~ll~lDyDGTL~PI-v~~P~~A~---~~-----------~~~~~aL~~La-~~~~vaIvSGR~~~~l~~ 151 (354)
T PLN02151 88 EEILHKSEGKQIVMFLDYDGTLSPI-VDDPDRAF---MS-----------KKMRNTVRKLA-KCFPTAIVSGRCREKVSS 151 (354)
T ss_pred HHHHHhhcCCceEEEEecCccCCCC-CCCccccc---CC-----------HHHHHHHHHHh-cCCCEEEEECCCHHHHHH
Confidence 3445557778899999999977510 00111111 11 122 2223323 456899999999988887
Q ss_pred Hhc
Q 027731 196 AIQ 198 (219)
Q Consensus 196 ~l~ 198 (219)
++.
T Consensus 152 ~~~ 154 (354)
T PLN02151 152 FVK 154 (354)
T ss_pred HcC
Confidence 764
No 141
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=25.63 E-value=2.1e+02 Score=23.31 Aligned_cols=38 Identities=11% Similarity=0.010 Sum_probs=24.6
Q ss_pred HHHHHHHHHCCCeEEEEECCch--HHHhHHHhccCCCCcC
Q 027731 4 AREVASVTRLGIEVAIVVGGGN--IFRGASAAGNSGLDRS 41 (219)
Q Consensus 4 a~~i~~l~~~g~~vviV~GgG~--~~~~~~~~~~~~~~~~ 41 (219)
.+.|.+|+++|++++++++... .......++..|++..
T Consensus 23 ~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~ 62 (249)
T TIGR01457 23 ETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPAT 62 (249)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCC
Confidence 5678899999999999997432 3222334444556543
No 142
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=25.56 E-value=4.5e+02 Score=23.58 Aligned_cols=68 Identities=21% Similarity=0.237 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCCCeeEecccccccccchHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCc
Q 027731 54 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAE 126 (219)
Q Consensus 54 ~~~l~~~~l~~~gi~a~~~~~~~~~~~~~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad 126 (219)
|...++..|.+.|+.+...... .|-.+ .+.+.+.++++...+.|++| |.....-|.+...+|..++-+
T Consensus 21 N~~~l~~~L~~~G~~v~~~~~v--~Dd~~-~i~~~l~~a~~~~DlVIttG--Glgpt~dD~t~eava~~~g~~ 88 (413)
T TIGR00200 21 NAQWLADFLAHQGLPLSRRTTV--GDNPE-RLKTIIRIASERADVLIFNG--GLGPTSDDLTAETIATAKGEP 88 (413)
T ss_pred hHHHHHHHHHHCCCeEEEEEEe--CCCHH-HHHHHHHHHhcCCCEEEEcC--CCCCCCcccHHHHHHHHhCCC
Confidence 4445677888999987643211 11111 12233445666677888887 444566777777887777654
No 143
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=25.46 E-value=99 Score=23.91 Aligned_cols=21 Identities=10% Similarity=-0.007 Sum_probs=16.2
Q ss_pred HHHHHHHHHCCCeEEEEECCc
Q 027731 4 AREVASVTRLGIEVAIVVGGG 24 (219)
Q Consensus 4 a~~i~~l~~~g~~vviV~GgG 24 (219)
.+.+..++++|++++||+++-
T Consensus 93 ~~~l~~l~~~g~~v~ivS~s~ 113 (202)
T TIGR01490 93 RDLIRWHKAEGHTIVLVSASL 113 (202)
T ss_pred HHHHHHHHHCCCEEEEEeCCc
Confidence 455677788899999999643
No 144
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=25.45 E-value=2.3e+02 Score=27.30 Aligned_cols=70 Identities=11% Similarity=0.087 Sum_probs=44.3
Q ss_pred HHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhCCCCCchH-HHHHHHHh-CCCcEEEEecCCCc
Q 027731 114 TAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDM-TAITLCQE-NNIPVVVFNLNQPG 191 (219)
Q Consensus 114 ~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~-~aa~~a~~-~gi~v~I~~g~~~~ 191 (219)
.....+...-.+++-++++|.||-+...- ..|... .++ ... ++.+.+.+ .|+.|.|++|+.+.
T Consensus 479 ~~~~~~~~y~~~~~rLi~~D~DGTL~~~~-~~~~~~---~~~-----------~~~~~~L~~L~~d~g~~V~ivSGR~~~ 543 (726)
T PRK14501 479 AAEEIIARYRAASRRLLLLDYDGTLVPFA-PDPELA---VPD-----------KELRDLLRRLAADPNTDVAIISGRDRD 543 (726)
T ss_pred CHHHHHHHHHhccceEEEEecCccccCCC-CCcccC---CCC-----------HHHHHHHHHHHcCCCCeEEEEeCCCHH
Confidence 44556666667888899999999876420 011111 111 122 33444455 48999999999999
Q ss_pred hHHHHhc
Q 027731 192 NIAKAIQ 198 (219)
Q Consensus 192 ~i~~~l~ 198 (219)
.+.+.+.
T Consensus 544 ~l~~~~~ 550 (726)
T PRK14501 544 TLERWFG 550 (726)
T ss_pred HHHHHhC
Confidence 8888765
No 145
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=25.28 E-value=1.4e+02 Score=24.16 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=0.0
Q ss_pred EeeeccCccccCCCCCCCCCcccccccHHHHhhCCCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHh
Q 027731 129 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAI 197 (219)
Q Consensus 129 iiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l 197 (219)
++++|.||=+-.+.+..+. --.++.+.+.+.|+.+.|+.|+.+..+..++
T Consensus 1 li~~DlDGTLl~~~~~i~~-------------------~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~ 50 (256)
T TIGR00099 1 LIFIDLDGTLLNDDHTISP-------------------STKEALAKLREKGIKVVLATGRPYKEVKNIL 50 (256)
T ss_pred CEEEeCCCCCCCCCCccCH-------------------HHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH
No 146
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=24.73 E-value=91 Score=24.68 Aligned_cols=21 Identities=24% Similarity=0.502 Sum_probs=17.5
Q ss_pred HHHHHHHHHHCCCeEEEEECC
Q 027731 3 IAREVASVTRLGIEVAIVVGG 23 (219)
Q Consensus 3 la~~i~~l~~~g~~vviV~Gg 23 (219)
..+.|+++++.|+++++++|=
T Consensus 25 ~~~al~~l~~~G~~~~iaTGR 45 (230)
T PRK01158 25 AVEAIRKAEKLGIPVILATGN 45 (230)
T ss_pred HHHHHHHHHHCCCEEEEEcCC
Confidence 457788999999999999953
No 147
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=24.23 E-value=2.8e+02 Score=20.06 Aligned_cols=67 Identities=16% Similarity=0.164 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCCeeEecccccccccchHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCc
Q 027731 55 AIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAE 126 (219)
Q Consensus 55 ~~l~~~~l~~~gi~a~~~~~~~~~~~~~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad 126 (219)
..++.+.|++.|..+....... |-. ..+.+.+.++++...+.|+.|. .....-|.+...++...+.+
T Consensus 20 ~~~l~~~l~~~G~~~~~~~~v~--Dd~-~~I~~~l~~~~~~~dliittGG--~g~g~~D~t~~~l~~~~~~~ 86 (135)
T smart00852 20 GPALAELLTELGIEVTRYVIVP--DDK-EAIKEALREALERADLVITTGG--TGPGPDDVTPEAVAEALGKE 86 (135)
T ss_pred HHHHHHHHHHCCCeEEEEEEeC--CCH-HHHHHHHHHHHhCCCEEEEcCC--CCCCCCcCcHHHHHHHhCCc
Confidence 3456678889998765422111 111 1122334455565667777763 44567788888888877643
No 148
>PRK02655 psbI photosystem II reaction center I protein I; Provisional
Probab=23.85 E-value=55 Score=18.68 Aligned_cols=16 Identities=38% Similarity=0.725 Sum_probs=12.8
Q ss_pred cCccccCCCCCCCCCc
Q 027731 134 VDGVYDDNPRRNPNAR 149 (219)
Q Consensus 134 V~Gv~~~dP~~~~~a~ 149 (219)
+.|..+.||..+|+.+
T Consensus 20 iFGflsnDP~RnP~rk 35 (38)
T PRK02655 20 VFGFLSSDPTRNPGRK 35 (38)
T ss_pred HcccCCCCCCCCCCcc
Confidence 5688899998888755
No 149
>KOG2728 consensus Uncharacterized conserved protein with similarity to phosphopantothenoylcysteine synthetase/decarboxylase [General function prediction only]
Probab=23.77 E-value=1.1e+02 Score=25.73 Aligned_cols=14 Identities=29% Similarity=0.617 Sum_probs=11.4
Q ss_pred CCCeEEEEECCchH
Q 027731 13 LGIEVAIVVGGGNI 26 (219)
Q Consensus 13 ~g~~vviV~GgG~~ 26 (219)
+|.++|+|++||..
T Consensus 29 ~~rrIVlVTSGGTt 42 (302)
T KOG2728|consen 29 QGRRIVLVTSGGTT 42 (302)
T ss_pred cCceEEEEecCCeE
Confidence 46789999999854
No 150
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=23.69 E-value=1.7e+02 Score=24.32 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=16.1
Q ss_pred HHHHHHHHHHCCCeEEEEECC
Q 027731 3 IAREVASVTRLGIEVAIVVGG 23 (219)
Q Consensus 3 la~~i~~l~~~g~~vviV~Gg 23 (219)
+...+.+..++|..++=+|+|
T Consensus 64 Ii~~m~~a~~~Gk~VvRLhSG 84 (254)
T COG2875 64 IIDLMVDAVREGKDVVRLHSG 84 (254)
T ss_pred HHHHHHHHHHcCCeEEEeecC
Confidence 455666777889999999966
No 151
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=23.51 E-value=1.7e+02 Score=24.19 Aligned_cols=76 Identities=16% Similarity=0.008 Sum_probs=46.8
Q ss_pred CccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHH-hhCCCCCchHHHHHHHHhCCCcEEEEe
Q 027731 108 PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEV-TSKDLSVMDMTAITLCQENNIPVVVFN 186 (219)
Q Consensus 108 ~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~-~~~g~~~~k~~aa~~a~~~gi~v~I~~ 186 (219)
-|++-|.-....|+.+|||.+.+.|. -|..- ..-.+-..+|+ .. -..+++.|.+.|+.|..-.
T Consensus 129 LFiDP~~~qi~~A~~~Gad~VELhTG---~yA~a-------~~~~~~~~~ell~~------l~~aa~~a~~lGL~VnAGH 192 (239)
T PF03740_consen 129 LFIDPDPEQIEAAKELGADRVELHTG---PYANA-------FDDAEEAEEELLER------LRDAARYAHELGLGVNAGH 192 (239)
T ss_dssp EEE-S-HHHHHHHHHTT-SEEEEETH---HHHHH-------SSHHHHHHHHHHHH------HHHHHHHHHHTT-EEEEET
T ss_pred EEeCCCHHHHHHHHHcCCCEEEEehh---Hhhhh-------cCCHHHHHHHHHHH------HHHHHHHHHHcCCEEecCC
Confidence 37899999999999999999999984 44321 00000001111 11 2467888999999999999
Q ss_pred cCCCchHHHHhcC
Q 027731 187 LNQPGNIAKAIQG 199 (219)
Q Consensus 187 g~~~~~i~~~l~g 199 (219)
|.+.+++..+..-
T Consensus 193 gL~y~N~~~i~~i 205 (239)
T PF03740_consen 193 GLNYDNVRPIAAI 205 (239)
T ss_dssp T--TTTHHHHHTS
T ss_pred CCCHHHHHHHHhC
Confidence 9999988877653
No 152
>TIGR01508 rib_reduct_arch 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1'-reductase, archaeal. in riboflavin biosynthesis is reduced first, and then deaminated, in both Archaea and Fungi, opposite the order in Bacteria. The subsequent deaminase is not presently known and is not closely homologous to the deaminase domain (3.5.4.26) fused to the reductase domain (1.1.1.193) similar to this protein but found in most bacteria.
Probab=23.20 E-value=1.3e+02 Score=24.05 Aligned_cols=11 Identities=27% Similarity=0.495 Sum_probs=6.0
Q ss_pred HHHHHCCCeEE
Q 027731 8 ASVTRLGIEVA 18 (219)
Q Consensus 8 ~~l~~~g~~vv 18 (219)
..+.+.|.+++
T Consensus 106 ~~l~~~gv~vi 116 (210)
T TIGR01508 106 EELEDKGVEVV 116 (210)
T ss_pred HHHHHCCCEEE
Confidence 44555666654
No 153
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=23.13 E-value=1.1e+02 Score=26.11 Aligned_cols=27 Identities=30% Similarity=0.663 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHCC----CeEEEEE-CCchHHH
Q 027731 2 AIAREVASVTRLG----IEVAIVV-GGGNIFR 28 (219)
Q Consensus 2 ~la~~i~~l~~~g----~~vviV~-GgG~~~~ 28 (219)
.|++.|+.+.+.+ +.+|||. ||||+.+
T Consensus 59 ~I~~al~~~~~~~~~~~~Dviii~RGGGs~eD 90 (319)
T PF02601_consen 59 SIVSALRKANEMGQADDFDVIIIIRGGGSIED 90 (319)
T ss_pred HHHHHHHHHHhccccccccEEEEecCCCChHH
Confidence 4677777776654 6666554 8887644
No 154
>PLN02645 phosphoglycolate phosphatase
Probab=22.99 E-value=2.5e+02 Score=23.86 Aligned_cols=39 Identities=10% Similarity=0.196 Sum_probs=25.0
Q ss_pred HHHHHHHHHHCCCeEEEEECCch--HHHhHHHhccCCCCcC
Q 027731 3 IAREVASVTRLGIEVAIVVGGGN--IFRGASAAGNSGLDRS 41 (219)
Q Consensus 3 la~~i~~l~~~g~~vviV~GgG~--~~~~~~~~~~~~~~~~ 41 (219)
..+.|++|+++|++++++++.+. .......+...|+...
T Consensus 49 a~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~ 89 (311)
T PLN02645 49 VPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVT 89 (311)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCC
Confidence 35778899999999999997553 2222333344556543
No 155
>PRK05625 5-amino-6-(5-phosphoribosylamino)uracil reductase; Validated
Probab=22.88 E-value=1.3e+02 Score=23.91 Aligned_cols=12 Identities=33% Similarity=0.498 Sum_probs=6.8
Q ss_pred HHHHHHCCCeEE
Q 027731 7 VASVTRLGIEVA 18 (219)
Q Consensus 7 i~~l~~~g~~vv 18 (219)
+..+.+.|.+++
T Consensus 109 ~~~l~~~~~~v~ 120 (217)
T PRK05625 109 VEELEKKGAEVI 120 (217)
T ss_pred HHHHHHCCCEEE
Confidence 344556666654
No 156
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=22.50 E-value=1.1e+02 Score=20.96 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=16.9
Q ss_pred hHHHHHHHHHhcCCceEEeeeccC
Q 027731 112 TDTAAALRCAEINAEVVLKATNVD 135 (219)
Q Consensus 112 sD~~Aa~lA~~l~Ad~liiltDV~ 135 (219)
.+.+........++++++++||-|
T Consensus 47 ~~~i~~l~~~~~~~~~iiiatD~D 70 (100)
T PF01751_consen 47 KKQIKNLKKLLKKADEIIIATDPD 70 (100)
T ss_dssp HHHHHHHHHHHHSCSEEEEEC-SS
T ss_pred cccchhhHHHhhhccEeeecCCCC
Confidence 455666666667899999999955
No 157
>PRK10976 putative hydrolase; Provisional
Probab=22.15 E-value=1.1e+02 Score=25.07 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=17.2
Q ss_pred HHHHHHHHHHCCCeEEEEEC
Q 027731 3 IAREVASVTRLGIEVAIVVG 22 (219)
Q Consensus 3 la~~i~~l~~~g~~vviV~G 22 (219)
-.+.|++++++|+++++.+|
T Consensus 24 ~~~ai~~l~~~G~~~~iaTG 43 (266)
T PRK10976 24 AKETLKLLTARGIHFVFATG 43 (266)
T ss_pred HHHHHHHHHHCCCEEEEEcC
Confidence 35778999999999999985
No 158
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=22.15 E-value=1e+02 Score=23.05 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=16.0
Q ss_pred HHHHHHHHHHCCCeEEEEECC
Q 027731 3 IAREVASVTRLGIEVAIVVGG 23 (219)
Q Consensus 3 la~~i~~l~~~g~~vviV~Gg 23 (219)
+.+.++.+++.|++++||+|+
T Consensus 78 ~~~~l~~l~~~g~~~~ivS~~ 98 (177)
T TIGR01488 78 ARELISWLKERGIDTVIVSGG 98 (177)
T ss_pred HHHHHHHHHHCCCEEEEECCC
Confidence 345667788889999999854
No 159
>COG1915 Uncharacterized conserved protein [Function unknown]
Probab=21.80 E-value=1.1e+02 Score=26.49 Aligned_cols=20 Identities=25% Similarity=0.410 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHCCCeEEEEE
Q 027731 2 AIAREVASVTRLGIEVAIVV 21 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~ 21 (219)
++|.++.+++.+|.|+++|-
T Consensus 188 ~IA~E~~ei~~kgGkIvvv~ 207 (415)
T COG1915 188 QIAWEIREIRDKGGKIVVVA 207 (415)
T ss_pred HHHHHHHHHHhcCCcEEEEe
Confidence 57899999999999977664
No 160
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=21.53 E-value=1e+02 Score=24.41 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=16.5
Q ss_pred HHHHHHHHHHCCCeEEEEECC
Q 027731 3 IAREVASVTRLGIEVAIVVGG 23 (219)
Q Consensus 3 la~~i~~l~~~g~~vviV~Gg 23 (219)
+.+.+..+++.|+++.||+||
T Consensus 79 ~~e~l~~l~~~g~~~~IvS~~ 99 (219)
T PRK09552 79 FHEFVQFVKENNIPFYVVSGG 99 (219)
T ss_pred HHHHHHHHHHcCCeEEEECCC
Confidence 345677788899999999864
No 161
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=21.32 E-value=1.4e+02 Score=26.11 Aligned_cols=28 Identities=25% Similarity=0.573 Sum_probs=23.0
Q ss_pred HHHHHHHHHHCCCeEEEEECCchHHHhH
Q 027731 3 IAREVASVTRLGIEVAIVVGGGNIFRGA 30 (219)
Q Consensus 3 la~~i~~l~~~g~~vviV~GgG~~~~~~ 30 (219)
+.+.|.-+++++..+++-.||||+-++-
T Consensus 74 v~kaV~i~kee~idflLAVGGGSViD~t 101 (384)
T COG1979 74 LMKAVEICKEENIDFLLAVGGGSVIDGT 101 (384)
T ss_pred HHHHHHHHHHcCceEEEEecCcchhhhH
Confidence 4567777889999999999999876653
No 162
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=21.22 E-value=1.8e+02 Score=24.98 Aligned_cols=21 Identities=10% Similarity=0.159 Sum_probs=17.9
Q ss_pred HHHHHHHHHHCCCeEEEEECC
Q 027731 3 IAREVASVTRLGIEVAIVVGG 23 (219)
Q Consensus 3 la~~i~~l~~~g~~vviV~Gg 23 (219)
+.+.+.+|+++|+++.|+++|
T Consensus 153 V~EtL~eLkekGikLaIvTNg 173 (303)
T PHA03398 153 VYDSLDELKERGCVLVLWSYG 173 (303)
T ss_pred HHHHHHHHHHCCCEEEEEcCC
Confidence 567889999999999999954
No 163
>cd00209 DHFR Dihydrofolate reductase (DHFR). Reduces 7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH as a cofactor. This is an essential step in the biosynthesis of deoxythymidine phosphate since 5,6,7,8-tetrahydrofolate is required to regenerate 5,10-methylenetetrahydrofolate which is then utilized by thymidylate synthase. Inhibition of DHFR interrupts thymidilate synthesis and DNA replication, inhibitors of DHFR (such as Methotrexate) are used in cancer chemotherapy. 5,6,7,8-tetrahydrofolate also is involved in glycine, serine, and threonine metabolism and aminoacyl-tRNA biosynthesis.
Probab=21.10 E-value=1.5e+02 Score=22.40 Aligned_cols=25 Identities=20% Similarity=0.490 Sum_probs=14.8
Q ss_pred HHHHHHHHHHCCCeEEEEECCchHHH
Q 027731 3 IAREVASVTRLGIEVAIVVGGGNIFR 28 (219)
Q Consensus 3 la~~i~~l~~~g~~vviV~GgG~~~~ 28 (219)
+.+.|++++ ++.+-|.|.|||.+.+
T Consensus 80 ~~~~v~~lk-~~~~~I~v~GG~~l~~ 104 (158)
T cd00209 80 LEEALELAE-NTVEEIFVIGGAEIYK 104 (158)
T ss_pred HHHHHHHHh-cCCCeEEEECcHHHHH
Confidence 455666666 4445566777665543
No 164
>PRK00549 competence damage-inducible protein A; Provisional
Probab=21.09 E-value=4.6e+02 Score=23.47 Aligned_cols=68 Identities=21% Similarity=0.196 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCCCeeEecccccccccchHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCc
Q 027731 54 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAE 126 (219)
Q Consensus 54 ~~~l~~~~l~~~gi~a~~~~~~~~~~~~~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad 126 (219)
|...++..|.+.|+.+...... +|..+ .+.+.+..+++...+.|++| |.....-|.+...++..++.+
T Consensus 21 N~~~L~~~L~~~G~~v~~~~~v--~Dd~~-~I~~~l~~a~~~~DlVItTG--GlGpt~dD~t~ea~a~~~g~~ 88 (414)
T PRK00549 21 NAQFLSEKLAELGIDVYHQTVV--GDNPE-RLLSALEIAEERSDLIITTG--GLGPTKDDLTKETVAKFLGRE 88 (414)
T ss_pred hHHHHHHHHHHCCCeEEEEEEe--CCCHH-HHHHHHHHhccCCCEEEECC--CCCCCCCccHHHHHHHHhCCC
Confidence 4455677889999987643211 12111 12223334555667888887 344566777777888877754
No 165
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=21.01 E-value=1.3e+02 Score=23.10 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHCCCeEEEEECC
Q 027731 2 AIAREVASVTRLGIEVAIVVGG 23 (219)
Q Consensus 2 ~la~~i~~l~~~g~~vviV~Gg 23 (219)
.+|+.+..+...|..+.++.||
T Consensus 84 ~fA~~l~~~~~~G~~i~f~IGG 105 (155)
T COG1576 84 EFADFLERLRDDGRDISFLIGG 105 (155)
T ss_pred HHHHHHHHHHhcCCeEEEEEeC
Confidence 5899999999999999999964
No 166
>TIGR00227 ribD_Cterm riboflavin-specific deaminase C-terminal domain. Eubacterial riboflavin-specific deaminases have a zinc-binding domain recognized by the dCMP_cyt_deam model toward the N-terminus and this domain toward the C-terminus. Yeast HTP reductase, a riboflavin-biosynthetic enzyme, and several archaeal proteins believed related to riboflavin biosynthesis consist only of this domain and lack the dCMP_cyt_deam domain.
Probab=20.62 E-value=1.6e+02 Score=23.35 Aligned_cols=18 Identities=33% Similarity=0.588 Sum_probs=7.0
Q ss_pred HHHHHHCCCeEEEEECCc
Q 027731 7 VASVTRLGIEVAIVVGGG 24 (219)
Q Consensus 7 i~~l~~~g~~vviV~GgG 24 (219)
+++|+++|.+=|+|-|||
T Consensus 134 l~~L~~~g~~~llveGG~ 151 (216)
T TIGR00227 134 MEILYEEGINSVMVEGGG 151 (216)
T ss_pred HHHHHHcCCCEEEEeeCH
Confidence 333333343333444333
No 167
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=20.54 E-value=3.4e+02 Score=19.66 Aligned_cols=65 Identities=15% Similarity=0.130 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhcCCCeeEecccccccccchHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhc
Q 027731 54 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEI 123 (219)
Q Consensus 54 ~~~l~~~~l~~~gi~a~~~~~~~~~~~~~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l 123 (219)
|..++.+.|++.|......... .|- ...+.+.+.++++...+.|++| |.....-|.+...++...
T Consensus 20 n~~~l~~~l~~~G~~v~~~~~v--~Dd-~~~i~~~i~~~~~~~DlvittG--G~g~g~~D~t~~ai~~~g 84 (133)
T cd00758 20 NGPALEALLEDLGCEVIYAGVV--PDD-ADSIRAALIEASREADLVLTTG--GTGVGRRDVTPEALAELG 84 (133)
T ss_pred hHHHHHHHHHHCCCEEEEeeec--CCC-HHHHHHHHHHHHhcCCEEEECC--CCCCCCCcchHHHHHHhc
Confidence 3455677888899876543211 111 0112233445666677888887 445567888888888765
No 168
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=20.53 E-value=1.2e+02 Score=23.77 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=17.5
Q ss_pred HHHHHHHHHHCCCeEEEEECC
Q 027731 3 IAREVASVTRLGIEVAIVVGG 23 (219)
Q Consensus 3 la~~i~~l~~~g~~vviV~Gg 23 (219)
..+.|.++++.|+++++++|-
T Consensus 23 ~~~~i~~l~~~g~~~~~~TGR 43 (215)
T TIGR01487 23 AIEAIRKAEKKGIPVSLVTGN 43 (215)
T ss_pred HHHHHHHHHHCCCEEEEEcCC
Confidence 456788999999999999953
No 169
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=20.52 E-value=3.7e+02 Score=20.06 Aligned_cols=66 Identities=11% Similarity=0.115 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcCCCeeEecccccccccchHHHHHHHHHHh--CCCEEEEeCCCCCCccChHHHHHHHHHhcC
Q 027731 54 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE--KGRVVIFAAGTGNPFFTTDTAAALRCAEIN 124 (219)
Q Consensus 54 ~~~l~~~~l~~~gi~a~~~~~~~~~~~~~~~~~~~~~~~l~--~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~ 124 (219)
|..++++.|++.|..+...... .|-. ..+.+.+.+.++ ...+.|++| |...+.-|.+...++..++
T Consensus 21 n~~~l~~~l~~~G~~v~~~~~v--~Dd~-~~i~~~l~~~~~~~~~DlVittG--G~s~g~~D~t~~al~~~~~ 88 (152)
T cd00886 21 SGPALVELLEEAGHEVVAYEIV--PDDK-DEIREALIEWADEDGVDLILTTG--GTGLAPRDVTPEATRPLLD 88 (152)
T ss_pred hHHHHHHHHHHcCCeeeeEEEc--CCCH-HHHHHHHHHHHhcCCCCEEEECC--CcCCCCCcCcHHHHHHHhC
Confidence 3445677889999876532211 1111 112233445556 567878877 4455677888888887765
No 170
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=20.40 E-value=2.2e+02 Score=19.09 Aligned_cols=32 Identities=22% Similarity=0.435 Sum_probs=20.4
Q ss_pred HHHHHHhCCCcEEEEecCCCchHHHHhcCCCC
Q 027731 171 AITLCQENNIPVVVFNLNQPGNIAKAIQGERV 202 (219)
Q Consensus 171 aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~ 202 (219)
++..|.+.+.|+.+++...+..+.+.+.....
T Consensus 42 a~~~a~~~~~PIll~~~~l~~~~~~~l~~~~~ 73 (92)
T PF04122_consen 42 ASPLAAKNNAPILLVNNSLPSSVKAFLKSLNI 73 (92)
T ss_pred hHHHHHhcCCeEEEECCCCCHHHHHHHHHcCC
Confidence 34566677888888885555666666654433
No 171
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=20.16 E-value=2.1e+02 Score=24.61 Aligned_cols=27 Identities=19% Similarity=0.468 Sum_probs=19.3
Q ss_pred HHHHHHHhCCCcEEEEecCCCchHHHH
Q 027731 170 TAITLCQENNIPVVVFNLNQPGNIAKA 196 (219)
Q Consensus 170 ~aa~~a~~~gi~v~I~~g~~~~~i~~~ 196 (219)
++...+.+.|+++.+++++....+..+
T Consensus 25 ~aL~~Lk~~GI~vVlaTGRt~~ev~~l 51 (302)
T PRK12702 25 QALAALERRSIPLVLYSLRTRAQLEHL 51 (302)
T ss_pred HHHHHHHHCCCEEEEEcCCCHHHHHHH
Confidence 445666778888888888877665443
No 172
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=20.12 E-value=2.3e+02 Score=25.92 Aligned_cols=21 Identities=38% Similarity=0.395 Sum_probs=16.5
Q ss_pred HHHHHHHHHCCCeEEEEECCc
Q 027731 4 AREVASVTRLGIEVAIVVGGG 24 (219)
Q Consensus 4 a~~i~~l~~~g~~vviV~GgG 24 (219)
+++.+++...-.++|||+|=|
T Consensus 296 ~~d~a~~l~~A~~ViIVPGYG 316 (462)
T PRK09444 296 AEEVAEMLKNSHSVIITPGYG 316 (462)
T ss_pred HHHHHHHHHhCCcEEEECChH
Confidence 467778888788999999744
Done!