Query 027732
Match_columns 219
No_of_seqs 121 out of 439
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 14:21:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027732.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027732hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5040 BMH1 14-3-3 family pro 100.0 4.7E-84 1E-88 536.0 14.8 211 4-216 1-211 (268)
2 smart00101 14_3_3 14-3-3 homol 100.0 2.1E-81 4.6E-86 543.2 23.4 207 8-215 1-208 (244)
3 PF00244 14-3-3: 14-3-3 protei 100.0 2.5E-77 5.3E-82 516.7 22.2 207 8-216 1-207 (236)
4 KOG0841 Multifunctional chaper 100.0 2.7E-73 5.9E-78 483.5 17.7 208 7-216 1-209 (247)
5 PF13424 TPR_12: Tetratricopep 96.6 0.0045 9.7E-08 43.3 4.7 55 151-207 21-75 (78)
6 KOG1840 Kinesin light chain [C 95.8 0.94 2E-05 43.8 17.5 185 10-209 201-398 (508)
7 TIGR00990 3a0801s09 mitochondr 93.2 2 4.4E-05 41.6 13.2 54 151-206 483-536 (615)
8 PF12862 Apc5: Anaphase-promot 92.4 0.98 2.1E-05 33.2 7.7 74 134-213 2-76 (94)
9 PF13414 TPR_11: TPR repeat; P 85.9 3.6 7.8E-05 27.4 6.0 47 151-206 19-66 (69)
10 PF04781 DUF627: Protein of un 85.3 3 6.4E-05 32.4 5.8 58 107-165 16-74 (111)
11 PF13374 TPR_10: Tetratricopep 82.7 1.3 2.8E-05 26.4 2.4 24 151-174 18-41 (42)
12 PF13174 TPR_6: Tetratricopept 82.5 3.2 7E-05 23.4 4.0 29 10-38 2-30 (33)
13 PF07719 TPR_2: Tetratricopept 81.7 3.9 8.4E-05 23.3 4.1 28 11-38 4-31 (34)
14 KOG1840 Kinesin light chain [C 80.6 58 0.0013 31.6 16.5 178 9-206 284-478 (508)
15 TIGR02917 PEP_TPR_lipo putativ 77.5 71 0.0015 30.9 15.3 61 9-73 23-83 (899)
16 PF13181 TPR_8: Tetratricopept 75.6 6 0.00013 22.6 3.7 29 10-38 3-31 (34)
17 PF13428 TPR_14: Tetratricopep 74.3 8.2 0.00018 23.9 4.3 29 10-38 3-31 (44)
18 TIGR02917 PEP_TPR_lipo putativ 73.3 91 0.002 30.1 16.7 28 11-38 706-733 (899)
19 PF00515 TPR_1: Tetratricopept 71.6 11 0.00023 21.6 4.1 28 11-38 4-31 (34)
20 PF13431 TPR_17: Tetratricopep 71.2 4 8.6E-05 24.4 2.2 34 157-199 1-34 (34)
21 PF13424 TPR_12: Tetratricopep 71.1 6.9 0.00015 26.7 3.7 34 173-207 1-34 (78)
22 PRK09782 bacteriophage N4 rece 67.1 1.7E+02 0.0037 30.8 14.3 25 11-35 512-536 (987)
23 PF13432 TPR_16: Tetratricopep 62.5 21 0.00045 23.4 4.7 41 13-56 2-42 (65)
24 KOG4759 Ribosome recycling fac 62.5 41 0.00088 29.9 7.5 71 41-114 183-253 (263)
25 PRK10049 pgaA outer membrane p 62.1 1.8E+02 0.0039 29.3 15.2 27 11-37 119-145 (765)
26 PF13176 TPR_7: Tetratricopept 61.8 17 0.00036 21.6 3.7 26 11-36 2-27 (36)
27 KOG4162 Predicted calmodulin-b 61.0 79 0.0017 32.3 10.0 96 97-207 411-507 (799)
28 PF01765 RRF: Ribosome recycli 59.8 38 0.00082 27.6 6.6 73 41-114 85-157 (165)
29 PF13371 TPR_9: Tetratricopept 59.0 27 0.0006 23.2 4.8 34 173-207 25-58 (73)
30 PF03755 YicC_N: YicC-like fam 58.8 22 0.00047 28.8 4.9 63 153-215 82-148 (159)
31 COG0233 Frr Ribosome recycling 56.4 51 0.0011 27.9 6.8 73 41-114 105-177 (187)
32 TIGR00990 3a0801s09 mitochondr 55.8 2E+02 0.0044 27.8 16.2 46 152-206 450-495 (615)
33 TIGR02521 type_IV_pilW type IV 55.3 98 0.0021 24.1 17.3 57 9-69 32-88 (234)
34 PF13429 TPR_15: Tetratricopep 55.2 32 0.00069 29.5 5.7 26 13-38 49-74 (280)
35 CHL00033 ycf3 photosystem I as 55.1 45 0.00097 26.4 6.2 69 122-206 32-100 (168)
36 smart00028 TPR Tetratricopepti 54.9 28 0.0006 17.6 3.8 28 11-38 4-31 (34)
37 PRK10370 formate-dependent nit 53.6 38 0.00082 28.1 5.7 10 153-162 91-100 (198)
38 PF14559 TPR_19: Tetratricopep 53.5 60 0.0013 21.1 5.9 45 152-205 8-52 (68)
39 PF13432 TPR_16: Tetratricopep 53.4 29 0.00063 22.6 4.1 31 8-38 31-61 (65)
40 PF12895 Apc3: Anaphase-promot 52.8 11 0.00024 26.3 2.1 44 156-202 39-82 (84)
41 cd00520 RRF Ribosome recycling 51.9 50 0.0011 27.4 6.1 73 41-114 99-171 (179)
42 TIGR00496 frr ribosome recycli 51.5 56 0.0012 27.1 6.3 73 41-114 94-166 (176)
43 PF09976 TPR_21: Tetratricopep 51.3 1.1E+02 0.0024 23.5 9.5 30 123-162 116-145 (145)
44 PRK00083 frr ribosome recyclin 49.6 63 0.0014 27.0 6.4 73 41-114 103-175 (185)
45 PRK02603 photosystem I assembl 47.9 54 0.0012 26.1 5.6 50 152-207 52-101 (172)
46 PRK11447 cellulose synthase su 47.7 3.7E+02 0.008 28.5 17.7 29 10-38 114-142 (1157)
47 TIGR02795 tol_pal_ybgF tol-pal 47.5 99 0.0021 21.8 7.8 46 10-55 4-49 (119)
48 PF12895 Apc3: Anaphase-promot 47.5 27 0.00059 24.2 3.4 45 152-203 6-50 (84)
49 PRK14720 transcript cleavage f 46.3 43 0.00094 34.8 5.8 80 117-209 95-180 (906)
50 TIGR02795 tol_pal_ybgF tol-pal 46.3 94 0.002 22.0 6.3 47 10-56 41-87 (119)
51 PF10083 DUF2321: Uncharacteri 45.4 1.5E+02 0.0032 24.4 7.6 34 26-61 83-116 (158)
52 PF05010 TACC: Transforming ac 45.4 2E+02 0.0042 24.7 9.5 83 13-111 123-206 (207)
53 PF13414 TPR_11: TPR repeat; P 42.0 97 0.0021 20.2 7.3 46 9-57 4-49 (69)
54 PF14559 TPR_19: Tetratricopep 41.8 46 0.001 21.7 3.7 53 20-76 3-55 (68)
55 PF10415 FumaraseC_C: Fumarase 41.8 28 0.00062 23.3 2.6 24 195-218 12-35 (55)
56 TIGR03302 OM_YfiO outer membra 40.9 2E+02 0.0044 23.5 18.3 64 9-73 34-97 (235)
57 PF12688 TPR_5: Tetratrico pep 40.0 1.3E+02 0.0029 23.1 6.5 50 152-207 18-67 (120)
58 PLN03088 SGT1, suppressor of 37.6 63 0.0014 29.4 5.0 24 181-205 74-97 (356)
59 PF13371 TPR_9: Tetratricopept 37.3 64 0.0014 21.3 3.9 29 10-38 31-59 (73)
60 cd02656 MIT MIT: domain contai 36.9 1.4E+02 0.003 20.5 6.2 28 9-36 7-34 (75)
61 PRK15363 pathogenicity island 35.5 1.7E+02 0.0036 24.0 6.6 50 148-210 82-131 (157)
62 PRK15359 type III secretion sy 35.4 1.7E+02 0.0037 22.7 6.6 48 151-207 74-121 (144)
63 TIGR02552 LcrH_SycD type III s 34.0 1.5E+02 0.0033 21.8 5.9 47 152-207 68-114 (135)
64 TIGR03504 FimV_Cterm FimV C-te 33.3 79 0.0017 20.2 3.5 40 12-52 3-42 (44)
65 COG3063 PilF Tfp pilus assembl 32.7 70 0.0015 28.2 4.2 46 151-205 85-130 (250)
66 PF08424 NRDE-2: NRDE-2, neces 32.6 1.3E+02 0.0027 27.0 6.1 58 151-209 118-185 (321)
67 PF08717 nsp8: nsp8 replicase; 31.2 58 0.0013 27.6 3.3 38 151-208 15-52 (199)
68 PF06552 TOM20_plant: Plant sp 31.2 1.3E+02 0.0028 25.4 5.4 67 136-210 36-108 (186)
69 PF12688 TPR_5: Tetratrico pep 30.9 2.5E+02 0.0054 21.6 9.7 61 8-69 38-98 (120)
70 KOG2002 TPR-containing nuclear 30.4 1.1E+02 0.0023 32.2 5.6 52 156-211 250-303 (1018)
71 PRK11788 tetratricopeptide rep 29.9 3.9E+02 0.0084 23.5 16.7 26 181-207 286-311 (389)
72 PF12569 NARP1: NMDA receptor- 29.7 5.3E+02 0.012 25.1 18.0 61 145-206 156-222 (517)
73 PRK10370 formate-dependent nit 29.0 1.4E+02 0.003 24.7 5.4 75 8-88 107-184 (198)
74 PF06160 EzrA: Septation ring 28.5 5.6E+02 0.012 25.0 12.4 82 21-115 416-497 (560)
75 COG5187 RPN7 26S proteasome re 28.4 90 0.002 28.7 4.2 41 176-217 114-157 (412)
76 cd05804 StaR_like StaR_like; a 27.9 4E+02 0.0087 23.1 12.3 163 6-204 41-212 (355)
77 PRK15174 Vi polysaccharide exp 27.5 6.1E+02 0.013 25.1 14.9 28 11-38 113-140 (656)
78 KOG1126 DNA-binding cell divis 27.3 97 0.0021 31.0 4.5 68 129-205 483-550 (638)
79 PRK11820 hypothetical protein; 26.9 86 0.0019 28.1 3.9 59 155-214 85-144 (288)
80 PF08899 DUF1844: Domain of un 26.7 2.1E+02 0.0045 20.5 5.1 29 24-56 40-68 (74)
81 PRK15179 Vi polysaccharide bio 26.7 6.8E+02 0.015 25.3 13.4 34 8-43 86-119 (694)
82 COG2956 Predicted N-acetylgluc 26.3 1.1E+02 0.0024 28.4 4.5 45 12-58 218-262 (389)
83 PF13525 YfiO: Outer membrane 26.3 3.7E+02 0.0079 22.1 10.6 43 10-52 7-49 (203)
84 cd02682 MIT_AAA_Arch MIT: doma 26.1 1.2E+02 0.0027 21.7 3.8 27 10-36 8-34 (75)
85 PRK11447 cellulose synthase su 26.1 8.1E+02 0.018 26.0 16.3 55 13-71 356-410 (1157)
86 PF13525 YfiO: Outer membrane 25.7 2.1E+02 0.0046 23.5 5.9 47 8-54 42-88 (203)
87 cd02683 MIT_1 MIT: domain cont 25.4 2E+02 0.0044 20.4 4.9 29 8-36 6-34 (77)
88 COG2250 Uncharacterized conser 25.2 3.3E+02 0.0072 21.2 9.4 105 9-114 14-129 (132)
89 PF10516 SHNi-TPR: SHNi-TPR; 24.8 1E+02 0.0022 19.0 2.8 37 133-172 2-38 (38)
90 PRK15179 Vi polysaccharide bio 24.7 6.3E+02 0.014 25.6 9.9 43 7-54 153-195 (694)
91 PF14689 SPOB_a: Sensor_kinase 24.4 1.5E+02 0.0033 20.0 4.0 26 12-37 27-52 (62)
92 PRK10803 tol-pal system protei 24.3 2.3E+02 0.005 24.8 6.1 51 155-206 193-245 (263)
93 PF09613 HrpB1_HrpK: Bacterial 24.2 3.3E+02 0.0071 22.4 6.5 56 9-70 45-100 (160)
94 PRK11189 lipoprotein NlpI; Pro 24.2 1.7E+02 0.0038 25.5 5.4 29 10-38 238-266 (296)
95 PF08631 SPO22: Meiosis protei 24.2 1.9E+02 0.0041 25.2 5.5 56 151-207 9-65 (278)
96 PHA02942 putative transposase; 23.6 2.9E+02 0.0063 25.6 6.9 72 143-216 19-91 (383)
97 KOG0687 26S proteasome regulat 23.1 4.2E+02 0.0092 24.7 7.6 82 132-216 54-145 (393)
98 PF00244 14-3-3: 14-3-3 protei 22.7 3.3E+02 0.0072 23.4 6.7 58 95-165 141-203 (236)
99 PHA02103 hypothetical protein 22.5 29 0.00064 26.9 0.1 14 131-144 78-91 (135)
100 PF09969 DUF2203: Uncharacteri 22.4 3.7E+02 0.0081 20.8 8.1 65 43-107 3-67 (120)
101 cd05493 Bromo_ALL-1 Bromodomai 22.3 1.1E+02 0.0024 24.3 3.3 37 97-133 75-118 (131)
102 PF04212 MIT: MIT (microtubule 22.3 1.8E+02 0.004 19.6 4.1 27 10-36 7-33 (69)
103 PF09986 DUF2225: Uncharacteri 21.8 4.6E+02 0.01 22.2 7.3 65 135-205 128-192 (214)
104 PF14490 HHH_4: Helix-hairpin- 21.2 1.3E+02 0.0029 21.9 3.4 48 128-187 38-86 (94)
105 smart00745 MIT Microtubule Int 21.1 2.8E+02 0.0062 18.9 6.6 28 9-36 9-36 (77)
No 1
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.7e-84 Score=536.02 Aligned_cols=211 Identities=72% Similarity=1.047 Sum_probs=207.5
Q ss_pred CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhcCCch
Q 027732 4 TDSSREENVYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNED 83 (219)
Q Consensus 4 m~~~r~~li~~AklaeqaeRy~dm~~~mk~~i~~~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~ieq~~~~~~~~~ 83 (219)
|++.|++-+|+|||++|||||+||++-||.++..+ .+|+.+|||||||||||+||.||+|||++++++|+++++|++.
T Consensus 1 Ms~~rE~svylAkLaeqAERYe~MvenMk~vas~~--~eLsVeeRNLlSVAYKNvigaRRaSWRivsSieQKeEsk~~~~ 78 (268)
T COG5040 1 MSTSREDSVYLAKLAEQAERYEEMVENMKLVASSG--QELSVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKGNTH 78 (268)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--chhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcCCChh
Confidence 57779999999999999999999999999999988 9999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHhhhcchhhhhhhcCchhHHHHHHHHHHHHHHHHH
Q 027732 84 HVSVIKEYRSKIENELSKICDGILSLLESHLIPSASSAESKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLLAYKSAQD 163 (219)
Q Consensus 84 ~~~~i~~y~~ki~~EL~~~c~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~ 163 (219)
++.+|++||++|++||..||+||+++|+++|||.+++.|++|||+|||||||||+|||..|+.+.++.+.+.++|+.|.+
T Consensus 79 qv~lI~eyrkkiE~EL~~icddiL~vl~~hlipaa~~~EskvFyyKMKGDYyRYlAEf~~G~~~~e~a~~slE~YK~Ase 158 (268)
T COG5040 79 QVELIKEYRKKIETELTKICDDILSVLEKHLIPAATTGESKVFYYKMKGDYYRYLAEFSVGEAREEAADSSLEAYKAASE 158 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEeecchHHHHHHHhccchHhHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCcchhhhhhHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhhhhh
Q 027732 164 IALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVRVAALLFLSFFL 216 (219)
Q Consensus 164 ~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~lAk~Afd~Ai~~ld~~~ 216 (219)
+|...||||||||||||||||||||||+|+|++||.|||+|||+||++||+|-
T Consensus 159 iA~teLpPT~PirLGLALNfSVFyYEIlnspdkAC~lAKqaFDeAI~ELDtLS 211 (268)
T COG5040 159 IATTELPPTHPIRLGLALNFSVFYYEILNSPDKACHLAKQAFDEAISELDTLS 211 (268)
T ss_pred HhhccCCCCCchhhhheecceeeeeecccCcHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999984
No 2
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=100.00 E-value=2.1e-81 Score=543.19 Aligned_cols=207 Identities=90% Similarity=1.234 Sum_probs=200.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhcCCchhHH
Q 027732 8 REENVYMAKLAEQAERYEEMVEFMEKVAKT-VDVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVS 86 (219)
Q Consensus 8 r~~li~~AklaeqaeRy~dm~~~mk~~i~~-~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~ieq~~~~~~~~~~~~ 86 (219)
|++++|+|||++|||||+||+.+||++++. + +.+||.||||||||||||+||++|+|||+|+++|++++.+|++.+++
T Consensus 1 re~~v~~Aklaeq~eRyddm~~~mk~~~~~~~-~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~~ 79 (244)
T smart00101 1 REENVYMAKLAEQAERYEEMVEFMEKVAKTVD-SEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVA 79 (244)
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC-CccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHHH
Confidence 689999999999999999999999999987 4 14999999999999999999999999999999999988788878889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHhhhcchhhhhhhcCchhHHHHHHHHHHHHHHHHHHHH
Q 027732 87 VIKEYRSKIENELSKICDGILSLLESHLIPSASSAESKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLLAYKSAQDIAL 166 (219)
Q Consensus 87 ~i~~y~~ki~~EL~~~c~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 166 (219)
.+++||++|++||..+|++||++||++|||.+++++++|||+|||||||||+|||..|+++++++++|+++|++|+++|+
T Consensus 80 ~~~~yr~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~ 159 (244)
T smart00101 80 SIKEYRGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIAL 159 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcchhhhhhHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhhhh
Q 027732 167 AELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVRVAALLFLSFF 215 (219)
Q Consensus 167 ~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~lAk~Afd~Ai~~ld~~ 215 (219)
++||||||+||||+||||||||||+++|++||++||+|||+||++||+|
T Consensus 160 ~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld~l 208 (244)
T smart00101 160 AELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTL 208 (244)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcc
Confidence 8999999999999999999999999999999999999999999999987
No 3
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=100.00 E-value=2.5e-77 Score=516.73 Aligned_cols=207 Identities=64% Similarity=0.986 Sum_probs=198.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhcCCchhHHH
Q 027732 8 REENVYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSV 87 (219)
Q Consensus 8 r~~li~~AklaeqaeRy~dm~~~mk~~i~~~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~ieq~~~~~~~~~~~~~ 87 (219)
|++++|+||+++|||||+||+++||++++.+ ++||.|||||||+||||+||++|+|||+|++++++++.+|++..++.
T Consensus 1 Re~li~~Aklaeq~eRy~dmv~~mk~~~~~~--~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~ 78 (236)
T PF00244_consen 1 REELIYLAKLAEQAERYDDMVEYMKQLIEMN--PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKL 78 (236)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHTS--S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHccC--CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHH
Confidence 8999999999999999999999999999998 99999999999999999999999999999999999998888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHhhhcchhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHh
Q 027732 88 IKEYRSKIENELSKICDGILSLLESHLIPSASSAESKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLLAYKSAQDIALA 167 (219)
Q Consensus 88 i~~y~~ki~~EL~~~c~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~ 167 (219)
+++||++|++||..+|++|+++||++|+|.+++++++|||+|||||||||+|||..++++.+++++|.++|++|+++|++
T Consensus 79 i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~ 158 (236)
T PF00244_consen 79 IKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKK 158 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCcchhhhhhHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhhhhh
Q 027732 168 ELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVRVAALLFLSFFL 216 (219)
Q Consensus 168 ~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~lAk~Afd~Ai~~ld~~~ 216 (219)
+||||||+||||+||||||||||+|++++||+||++|||+|++++|+|-
T Consensus 159 ~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l~ 207 (236)
T PF00244_consen 159 ELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTLS 207 (236)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGSH
T ss_pred ccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcccc
Confidence 9999999999999999999999999999999999999999999999863
No 4
>KOG0841 consensus Multifunctional chaperone (14-3-3 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-73 Score=483.53 Aligned_cols=208 Identities=75% Similarity=1.066 Sum_probs=203.8
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhcCCchhHH
Q 027732 7 SREENVYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVS 86 (219)
Q Consensus 7 ~r~~li~~AklaeqaeRy~dm~~~mk~~i~~~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~ieq~~~~~~~~~~~~ 86 (219)
+|+++|++||+++|||||+||+.+||.+++.+ .+||.||||||||+||||||++|+|||+|++|||+++++|++.++.
T Consensus 1 ~~~~~v~~akl~eqaery~~m~~~Mk~v~~~~--~eLtveernllsvayknVigarrasWriisSiEqKees~~~e~~v~ 78 (247)
T KOG0841|consen 1 EREELVYKAKLAEQAERYDEMVEAMKKVAELD--VELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESKGNEEKVK 78 (247)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHhhcccc--hhhhHHHHhhhhhhhccccchhHHHHHHhhhhhhcccCCCcchHHH
Confidence 48999999999999999999999999999987 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCC-chhHHHHHHhhhcchhhhhhhcCchhHHHHHHHHHHHHHHHHHHH
Q 027732 87 VIKEYRSKIENELSKICDGILSLLESHLIPSASS-AESKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLLAYKSAQDIA 165 (219)
Q Consensus 87 ~i~~y~~ki~~EL~~~c~eii~lid~~Lip~~~~-~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a 165 (219)
.+..||++|+.||..+|++++.++|.+|+|+++. .|++|||+|||||||||+|||.+|++|++++++++++|+.|.+++
T Consensus 79 ~i~~yr~~vE~El~~ic~~iL~lld~~Li~sa~~~~es~vf~~kmKgdy~rylae~~sg~erke~~~~sl~aYk~a~~ia 158 (247)
T KOG0841|consen 79 MIKEYRQKVETELAKICDDILSLLDKHLIPSATLPGESKVFYLKMKGDYYRYLAEFASGDERKEAADQSLEAYKEASEIA 158 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeeeccchhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988 789999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCcchhhhhhHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhhhhh
Q 027732 166 LAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVRVAALLFLSFFL 216 (219)
Q Consensus 166 ~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~lAk~Afd~Ai~~ld~~~ 216 (219)
+..|+|||||||||+||||||||||+|.|++||.|||+|||+||++||||-
T Consensus 159 ~~~l~PthPirLgLaLnfSvf~yeilnsPe~ac~lak~a~d~ai~eldtl~ 209 (247)
T KOG0841|consen 159 KAELQPTHPIRLGLALNFSVFYYEILNSPERACSLAKQAFDEAIAELDTLS 209 (247)
T ss_pred HhcCCCCCchHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999999999999999999984
No 5
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.57 E-value=0.0045 Score=43.31 Aligned_cols=55 Identities=24% Similarity=0.274 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhhhhHHHHHHHHHhCChHHHHHHHHHHHHH
Q 027732 151 AESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVRVA 207 (219)
Q Consensus 151 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~lAk~Afd~ 207 (219)
-+.|.+.|++|+++ .+.+++.||...-...|.+..++. +|++++|.+..++|++-
T Consensus 21 ~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 21 YDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence 45799999999999 567999998888888888988887 79999999999998863
No 6
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=95.80 E-value=0.94 Score=43.76 Aligned_cols=185 Identities=17% Similarity=0.209 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc----CCCCCCC-HHHHHHHHHHHhhhhhhhhhHHHHHH-hhhhhhhhcCC--
Q 027732 10 ENVYMAKLAEQAERYEEMVEFMEKVAKT----VDVEELT-VEERNLLSVAYKNVIGARRASWRIIS-SIEQKEESRGN-- 81 (219)
Q Consensus 10 ~li~~AklaeqaeRy~dm~~~mk~~i~~----~~~~~L~-~eERnLlsvayKn~i~~~R~s~R~l~-~ieq~~~~~~~-- 81 (219)
.+.++|....+.|+|+.++...|+.++. .+...+- ....+-|++.|-+. +..+.|..+.. ++...+...|.
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~-~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL-GKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4456888889999999999999988864 1101222 23444577776553 44566666653 33334444443
Q ss_pred chhHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHhhhcchhhhhhhcCchhHHHHHHHHHH
Q 027732 82 EDHVSVIKE-----YRSKIENELSKICDGILSLLESHLIPSASSAESKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLL 156 (219)
Q Consensus 82 ~~~~~~i~~-----y~~ki~~EL~~~c~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~ 156 (219)
+.....+.+ ++.-=-.|-...|+.+++|..+.+ .+..++..-- +.++..-.....=.+.|..
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~--~~~~~~v~~~-----------l~~~~~~~~~~~~~Eea~~ 346 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLL--GASHPEVAAQ-----------LSELAAILQSMNEYEEAKK 346 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh--ccChHHHHHH-----------HHHHHHHHHHhcchhHHHH
Confidence 333333332 344445788899999999998833 3333332221 2222222222233678899
Q ss_pred HHHHHHHHHHhcCCCCCcchhhhhhHHHHHHHHHhCChHHHHHHHHHHHHHHH
Q 027732 157 AYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVRVAAL 209 (219)
Q Consensus 157 aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~lAk~Afd~Ai 209 (219)
.|+.|+++....+.+-||.-=|+--|+++.|+- +|..++|.++.++|+.-+-
T Consensus 347 l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~-~gk~~ea~~~~k~ai~~~~ 398 (508)
T KOG1840|consen 347 LLQKALKIYLDAPGEDNVNLAKIYANLAELYLK-MGKYKEAEELYKKAIQILR 398 (508)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHH
Confidence 999999999888999999999999999999886 8999999999999987653
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=93.16 E-value=2 Score=41.64 Aligned_cols=54 Identities=15% Similarity=0.154 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhhhhHHHHHHHHHhCChHHHHHHHHHHHH
Q 027732 151 AESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVRV 206 (219)
Q Consensus 151 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~lAk~Afd 206 (219)
.+.|...|++|+++.. ..++.++..++ .+|.+..+|+-.++.++|..+.++|+.
T Consensus 483 ~~~A~~~~~~Al~l~p-~~~~~~~~~~~-l~~~a~~~~~~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 483 FDEAIEKFDTAIELEK-ETKPMYMNVLP-LINKALALFQWKQDFIEAENLCEKALI 536 (615)
T ss_pred HHHHHHHHHHHHhcCC-ccccccccHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4567777777776543 23333332222 344455556656777777777766643
No 8
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.39 E-value=0.98 Score=33.19 Aligned_cols=74 Identities=20% Similarity=0.155 Sum_probs=53.0
Q ss_pred chhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhh-hHHHHHHHHHhCChHHHHHHHHHHHHHHHHhh
Q 027732 134 YHRYLAEFKTGAERKEAAESTLLAYKSAQDIALAELAPTHPIRLGLA-LNFSVFYYEILNSPDRACNLAKQVRVAALLFL 212 (219)
Q Consensus 134 yyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~-LN~SVF~yEi~~~~~~A~~lAk~Afd~Ai~~l 212 (219)
|.+|+--+..+| -..|.+...+.++.+..+..+.++..+..+ ||.+.+++. +|++++|....++|++-|-..=
T Consensus 2 ~l~~~~~~~~~d-----y~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~Are~~ 75 (94)
T PF12862_consen 2 YLRYLNALRSGD-----YSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLARENG 75 (94)
T ss_pred HHHHHHHHHcCC-----HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHC
Confidence 345555555544 345777888888888777776654455544 788888886 7999999999999988876644
Q ss_pred h
Q 027732 213 S 213 (219)
Q Consensus 213 d 213 (219)
|
T Consensus 76 D 76 (94)
T PF12862_consen 76 D 76 (94)
T ss_pred C
Confidence 4
No 9
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=85.93 E-value=3.6 Score=27.43 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhhhhHHHHHHHHHhC-ChHHHHHHHHHHHH
Q 027732 151 AESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILN-SPDRACNLAKQVRV 206 (219)
Q Consensus 151 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~-~~~~A~~lAk~Afd 206 (219)
-+.|...|++|+++ +|-.-.+..|.++-++. +| ++++|+...++|+.
T Consensus 19 ~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 19 YEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHH
Confidence 45689999999875 24445578888888887 67 79999998888764
No 10
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=85.32 E-value=3 Score=32.36 Aligned_cols=58 Identities=14% Similarity=0.204 Sum_probs=40.5
Q ss_pred HHHHhhcccCCCCCchhHHHHHHhhhcchhhhhhhcCch-hHHHHHHHHHHHHHHHHHHH
Q 027732 107 LSLLESHLIPSASSAESKVFYLKMKGDYHRYLAEFKTGA-ERKEAAESTLLAYKSAQDIA 165 (219)
Q Consensus 107 i~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~-~~~~~~~~a~~aY~~A~~~a 165 (219)
+++|.+.+.... ..++-.|-+...|+.+..+|....+. -+....-.|.+||.+|..++
T Consensus 16 L~iied~i~~h~-~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Ls 74 (111)
T PF04781_consen 16 LEIIEDLISRHG-EDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELS 74 (111)
T ss_pred HHHHHHHHHHcc-CCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccC
Confidence 445544443332 22333488999999999999987654 46678889999999998654
No 11
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.67 E-value=1.3 Score=26.37 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCc
Q 027732 151 AESTLLAYKSAQDIALAELAPTHP 174 (219)
Q Consensus 151 ~~~a~~aY~~A~~~a~~~L~pt~p 174 (219)
.+.|...|++|+++.++-++|.||
T Consensus 18 ~~~A~~~~~~al~~~~~~~G~~Hp 41 (42)
T PF13374_consen 18 YEEALELLEEALEIRERLLGPDHP 41 (42)
T ss_dssp HHHHHHHHHHHHHHH---------
T ss_pred cchhhHHHHHHHHHHHHHhccccc
Confidence 457899999999999888899998
No 12
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.45 E-value=3.2 Score=23.37 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 027732 10 ENVYMAKLAEQAERYEEMVEFMEKVAKTV 38 (219)
Q Consensus 10 ~li~~AklaeqaeRy~dm~~~mk~~i~~~ 38 (219)
-+..+|.+..+.|+++++++.+++++...
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 35678999999999999999999999876
No 13
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=81.65 E-value=3.9 Score=23.27 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 027732 11 NVYMAKLAEQAERYEEMVEFMEKVAKTV 38 (219)
Q Consensus 11 li~~AklaeqaeRy~dm~~~mk~~i~~~ 38 (219)
+..++.+..+.|+|+++++++++.+..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 4578999999999999999999999876
No 14
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=80.62 E-value=58 Score=31.63 Aligned_cols=178 Identities=16% Similarity=0.156 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHH---------HHhhhhhhhhhHHHHHHhhhhhhh
Q 027732 9 EENVYMAKLAEQAERYEEMVEFMEKVAKTVDV--EELTVEERNLLSV---------AYKNVIGARRASWRIISSIEQKEE 77 (219)
Q Consensus 9 ~~li~~AklaeqaeRy~dm~~~mk~~i~~~~~--~~L~~eERnLlsv---------ayKn~i~~~R~s~R~l~~ieq~~~ 77 (219)
.-+..+|.+.-..|+|+++-.+++..++.... +....+--..|+. .|...+.=.+.+.+++ +....
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~---~~~~g 360 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY---LDAPG 360 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH---Hhhcc
Confidence 35667889999999999999999988864300 2233332222221 1222333333333333 22211
Q ss_pred hcCCchhHH-----HHHH-HHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHhhhcchhhhhhhcCchhHHHHH
Q 027732 78 SRGNEDHVS-----VIKE-YRSKIENELSKICDGILSLLESHLIPSASSAESKVFYLKMKGDYHRYLAEFKTGAERKEAA 151 (219)
Q Consensus 78 ~~~~~~~~~-----~i~~-y~~ki~~EL~~~c~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~ 151 (219)
. .+. .+. +-.- ++.-=.+|-..+-..+|+...... ...+...-.+++.|-.+|+|-- -.
T Consensus 361 ~-~~~-~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~--~~~~~~~~~~l~~la~~~~~~k-----------~~ 425 (508)
T KOG1840|consen 361 E-DNV-NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL--GKKDYGVGKPLNQLAEAYEELK-----------KY 425 (508)
T ss_pred c-cch-HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc--cCcChhhhHHHHHHHHHHHHhc-----------cc
Confidence 1 110 111 1111 111123455566667777665544 2233455677888888875422 24
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhhHHHHHHHHHhCChHHHHHHHHHHHH
Q 027732 152 ESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVRV 206 (219)
Q Consensus 152 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~lAk~Afd 206 (219)
..|.+.|.+|..+. ....|.||--++..+|.++- |+-+|+.++|++++..+..
T Consensus 426 ~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~-Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 426 EEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAAL-YRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred chHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHH-HHHcccHHHHHHHHHHHHH
Confidence 46889999999999 78999999999999999886 5568999999999987763
No 15
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=77.55 E-value=71 Score=30.86 Aligned_cols=61 Identities=20% Similarity=0.195 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHhhh
Q 027732 9 EENVYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRIISSIE 73 (219)
Q Consensus 9 ~~li~~AklaeqaeRy~dm~~~mk~~i~~~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~ie 73 (219)
+.++..|+.+..-|+|++++..+++.++.. |+ +.+=+..+..+|-. .+....+...+....
T Consensus 23 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~ 83 (899)
T TIGR02917 23 ESLIEAAKSYLQKNKYKAAIIQLKNALQKD--PN-DAEARFLLGKIYLA-LGDYAAAEKELRKAL 83 (899)
T ss_pred HHHHHHHHHHHHcCChHhHHHHHHHHHHhC--CC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 457888999999999999999999999875 44 67788888888776 577777777775543
No 16
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=75.60 E-value=6 Score=22.61 Aligned_cols=29 Identities=31% Similarity=0.426 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 027732 10 ENVYMAKLAEQAERYEEMVEFMEKVAKTV 38 (219)
Q Consensus 10 ~li~~AklaeqaeRy~dm~~~mk~~i~~~ 38 (219)
-+..++++..+.|+++.++.++++.++.+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 35678999999999999999999999876
No 17
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=74.28 E-value=8.2 Score=23.90 Aligned_cols=29 Identities=7% Similarity=0.061 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 027732 10 ENVYMAKLAEQAERYEEMVEFMEKVAKTV 38 (219)
Q Consensus 10 ~li~~AklaeqaeRy~dm~~~mk~~i~~~ 38 (219)
-+..+|+...+.|+++++.+..+++++..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 35678999999999999999999999876
No 18
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=73.33 E-value=91 Score=30.10 Aligned_cols=28 Identities=14% Similarity=0.118 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 027732 11 NVYMAKLAEQAERYEEMVEFMEKVAKTV 38 (219)
Q Consensus 11 li~~AklaeqaeRy~dm~~~mk~~i~~~ 38 (219)
...++.+..+.|+|++++..+++.+..+
T Consensus 706 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 733 (899)
T TIGR02917 706 FELEGDLYLRQKDYPAAIQAYRKALKRA 733 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 4456777777777777777777777654
No 19
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=71.59 E-value=11 Score=21.57 Aligned_cols=28 Identities=18% Similarity=0.218 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 027732 11 NVYMAKLAEQAERYEEMVEFMEKVAKTV 38 (219)
Q Consensus 11 li~~AklaeqaeRy~dm~~~mk~~i~~~ 38 (219)
+..++.+..+.|+|++++.+.++.++.+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 4567888999999999999999999887
No 20
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=71.23 E-value=4 Score=24.35 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhcCCCCCcchhhhhhHHHHHHHHHhCChHHHHH
Q 027732 157 AYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACN 199 (219)
Q Consensus 157 aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~ 199 (219)
+|++|++ +.|.|| ....|++++|+. .|+.++|++
T Consensus 1 ~y~kAie-----~~P~n~---~a~~nla~~~~~-~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIE-----LNPNNA---EAYNNLANLYLN-QGDYEEAIA 34 (34)
T ss_pred ChHHHHH-----HCCCCH---HHHHHHHHHHHH-CcCHHhhcC
Confidence 3667765 345554 456888998886 699999863
No 21
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=71.09 E-value=6.9 Score=26.75 Aligned_cols=34 Identities=24% Similarity=0.208 Sum_probs=28.9
Q ss_pred CcchhhhhhHHHHHHHHHhCChHHHHHHHHHHHHH
Q 027732 173 HPIRLGLALNFSVFYYEILNSPDRACNLAKQVRVA 207 (219)
Q Consensus 173 ~pirLgL~LN~SVF~yEi~~~~~~A~~lAk~Afd~ 207 (219)
||.......|.+..|++ +|+.++|+..-++|.+-
T Consensus 1 H~~~a~~~~~la~~~~~-~~~~~~A~~~~~~al~~ 34 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRE-LGRYDEALDYYEKALDI 34 (78)
T ss_dssp -HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Confidence 78888889999999996 79999999999999876
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=67.11 E-value=1.7e+02 Score=30.79 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Q 027732 11 NVYMAKLAEQAERYEEMVEFMEKVA 35 (219)
Q Consensus 11 li~~AklaeqaeRy~dm~~~mk~~i 35 (219)
.+.+|.+..+.|+|++++...+++.
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~ 536 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKIS 536 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 3444555556666666666666554
No 23
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=62.54 E-value=21 Score=23.35 Aligned_cols=41 Identities=22% Similarity=0.222 Sum_probs=30.7
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHh
Q 027732 13 YMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYK 56 (219)
Q Consensus 13 ~~AklaeqaeRy~dm~~~mk~~i~~~~~~~L~~eERnLlsvayK 56 (219)
.+|...-+.|+|++++..+++++... |. +.+=+..+..++-
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~--P~-~~~a~~~lg~~~~ 42 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD--PD-NPEAWYLLGRILY 42 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS--TT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHH
Confidence 46888889999999999999999875 43 4555555555544
No 24
>KOG4759 consensus Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=62.47 E-value=41 Score=29.91 Aligned_cols=71 Identities=24% Similarity=0.294 Sum_probs=52.6
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027732 41 EELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSVIKEYRSKIENELSKICDGILSLLESHL 114 (219)
Q Consensus 41 ~~L~~eERnLlsvayKn~i~~~R~s~R~l~~ieq~~~~~~~~~~~~~i~~y~~ki~~EL~~~c~eii~lid~~L 114 (219)
|+.|.|-|.-|+...+.+....|.|+|-+..---+...+... ..-.+-..+++.||..+.++.+..+|..|
T Consensus 183 P~~T~E~Re~laK~~~~~~ee~K~slr~ir~~~~kk~~k~~~---~~~~D~vkkae~~l~~l~k~~v~~ld~ll 253 (263)
T KOG4759|consen 183 PPVTKESREKLAKVLKRYFEEYKQSLRKIRTKSIKKSKKNKK---SLSEDEVKKAEAELQKLAKDAVNKLDDLL 253 (263)
T ss_pred CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999886433332222111 02355667888999999999888888765
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=62.05 E-value=1.8e+02 Score=29.27 Aligned_cols=27 Identities=15% Similarity=0.079 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 027732 11 NVYMAKLAEQAERYEEMVEFMEKVAKT 37 (219)
Q Consensus 11 li~~AklaeqaeRy~dm~~~mk~~i~~ 37 (219)
+..+|.+..+.|++++++..++++++.
T Consensus 119 ~~~la~~l~~~g~~~~Al~~l~~al~~ 145 (765)
T PRK10049 119 LLALAYVYKRAGRHWDELRAMTQALPR 145 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 334444444555555555555555444
No 26
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=61.84 E-value=17 Score=21.58 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh
Q 027732 11 NVYMAKLAEQAERYEEMVEFMEKVAK 36 (219)
Q Consensus 11 li~~AklaeqaeRy~dm~~~mk~~i~ 36 (219)
+..+|.+..+.|.|+.++++.++.+.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46789999999999999999998553
No 27
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=61.03 E-value=79 Score=32.28 Aligned_cols=96 Identities=20% Similarity=0.180 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHhhhcchhhhhhhcC-chhHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 027732 97 NELSKICDGILSLLESHLIPSASSAESKVFYLKMKGDYHRYLAEFKT-GAERKEAAESTLLAYKSAQDIALAELAPTHPI 175 (219)
Q Consensus 97 ~EL~~~c~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~-~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pi 175 (219)
+|..++.+.++++... ....-+---+++-|=-|-..|-..+ .++|.....++.++|++|.+ +.|+||
T Consensus 411 eegldYA~kai~~~~~------~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~-----~d~~dp- 478 (799)
T KOG4162|consen 411 EEGLDYAQKAISLLGG------QRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ-----FDPTDP- 478 (799)
T ss_pred hhHHHHHHHHHHHhhh------hhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh-----cCCCCc-
Confidence 4556666655553311 1111222235667777776665544 45788889999999999874 678999
Q ss_pred hhhhhhHHHHHHHHHhCChHHHHHHHHHHHHH
Q 027732 176 RLGLALNFSVFYYEILNSPDRACNLAKQVRVA 207 (219)
Q Consensus 176 rLgL~LN~SVF~yEi~~~~~~A~~lAk~Afd~ 207 (219)
-...+.|++|-+ .++.+.|.+.++++..-
T Consensus 479 --~~if~lalq~A~-~R~l~sAl~~~~eaL~l 507 (799)
T KOG4162|consen 479 --LVIFYLALQYAE-QRQLTSALDYAREALAL 507 (799)
T ss_pred --hHHHHHHHHHHH-HHhHHHHHHHHHHHHHh
Confidence 334555666665 79999999999988764
No 28
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=59.82 E-value=38 Score=27.55 Aligned_cols=73 Identities=21% Similarity=0.217 Sum_probs=48.7
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027732 41 EELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSVIKEYRSKIENELSKICDGILSLLESHL 114 (219)
Q Consensus 41 ~~L~~eERnLlsvayKn~i~~~R~s~R~l~~ieq~~~~~~~~~~~~~i~~y~~ki~~EL~~~c~eii~lid~~L 114 (219)
|.+|.|-|.-+....|...-..|.+.|.+..--.+.-.+ .......-++-..+.+++|..+-++.+.-||..+
T Consensus 85 P~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~lkk-~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~ 157 (165)
T PF01765_consen 85 PPPTEERRKELVKQAKKIAEEAKVSIRNIRRDAMKKLKK-LKKSKEISEDDIKKLEKEIQKLTDKYIKKIDELL 157 (165)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999986433222100 0000002355566777888888777777777654
No 29
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=58.96 E-value=27 Score=23.17 Aligned_cols=34 Identities=15% Similarity=0.062 Sum_probs=26.1
Q ss_pred CcchhhhhhHHHHHHHHHhCChHHHHHHHHHHHHH
Q 027732 173 HPIRLGLALNFSVFYYEILNSPDRACNLAKQVRVA 207 (219)
Q Consensus 173 ~pirLgL~LN~SVF~yEi~~~~~~A~~lAk~Afd~ 207 (219)
+|--..+-++++.+++. +|+.++|.....++...
T Consensus 25 ~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 25 DPDDPELWLQRARCLFQ-LGRYEEALEDLERALEL 58 (73)
T ss_pred CcccchhhHHHHHHHHH-hccHHHHHHHHHHHHHH
Confidence 45566777888888887 79999998887777643
No 30
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=58.79 E-value=22 Score=28.79 Aligned_cols=63 Identities=22% Similarity=0.089 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcchhhhhhHH-HHHH-HHH--hCChHHHHHHHHHHHHHHHHhhhhh
Q 027732 153 STLLAYKSAQDIALAELAPTHPIRLGLALNF-SVFY-YEI--LNSPDRACNLAKQVRVAALLFLSFF 215 (219)
Q Consensus 153 ~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~-SVF~-yEi--~~~~~~A~~lAk~Afd~Ai~~ld~~ 215 (219)
....+|-+++.-..+.++...|+.++..|.+ .||. .+- ....+..-.....++++|+..+...
T Consensus 82 ~l~~~y~~~l~~l~~~~~~~~~~~~~~ll~~p~v~~~~~~~~~~~~e~~~~~l~~~l~~AL~~l~~m 148 (159)
T PF03755_consen 82 ELAKAYYEALKELAEELGLAGPISLDDLLRLPGVLKVEEEEDEEEEEELWEALLEALEEALDELIAM 148 (159)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCHHHHHcCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777666667888889999999999 5776 331 1122334577899999999988653
No 31
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=56.45 E-value=51 Score=27.88 Aligned_cols=73 Identities=21% Similarity=0.216 Sum_probs=50.1
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027732 41 EELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSVIKEYRSKIENELSKICDGILSLLESHL 114 (219)
Q Consensus 41 ~~L~~eERnLlsvayKn~i~~~R~s~R~l~~ieq~~~~~~~~~~~~~i~~y~~ki~~EL~~~c~eii~lid~~L 114 (219)
|+||.|-|.=|..-.|.+.-.-|-|.|-+..--... -+........-++-..+.++++..+.++.+.-||..+
T Consensus 105 P~lTeErRkelvK~~k~~~EeakvaiRniRrda~d~-iKK~~K~~~isEDe~k~~e~~iQKlTd~yi~~iD~~~ 177 (187)
T COG0233 105 PPLTEERRKELVKVAKKYAEEAKVAVRNIRRDANDK-IKKLEKDKEISEDEVKKAEEEIQKLTDEYIKKIDELL 177 (187)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999885211110 0101011113356667788888888888888888765
No 32
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=55.80 E-value=2e+02 Score=27.84 Aligned_cols=46 Identities=13% Similarity=0.164 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhhHHHHHHHHHhCChHHHHHHHHHHHH
Q 027732 152 ESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVRV 206 (219)
Q Consensus 152 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~lAk~Afd 206 (219)
+.|...|++|+. +.|.+|. +..+++..+.+ .|+.++|+....+|+.
T Consensus 450 ~eA~~~~~~al~-----~~P~~~~---~~~~lg~~~~~-~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 450 ASSMATFRRCKK-----NFPEAPD---VYNYYGELLLD-QNKFDEAIEKFDTAIE 495 (615)
T ss_pred HHHHHHHHHHHH-----hCCCChH---HHHHHHHHHHH-ccCHHHHHHHHHHHHh
Confidence 345666666553 3345542 23344444444 7888888877666654
No 33
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=55.34 E-value=98 Score=24.11 Aligned_cols=57 Identities=14% Similarity=0.054 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhhhhhhhHHHHH
Q 027732 9 EENVYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRII 69 (219)
Q Consensus 9 ~~li~~AklaeqaeRy~dm~~~mk~~i~~~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l 69 (219)
.-+..++......|+|+++++.+.+.++.. |. +..-...++..|-.. +....+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~-~~~~~~~la~~~~~~-~~~~~A~~~~ 88 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD--PD-DYLAYLALALYYQQL-GELEKAEDSF 88 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc-cHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 345677888888999999999999998765 33 344444555554432 3333444433
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=55.24 E-value=32 Score=29.51 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcC
Q 027732 13 YMAKLAEQAERYEEMVEFMEKVAKTV 38 (219)
Q Consensus 13 ~~AklaeqaeRy~dm~~~mk~~i~~~ 38 (219)
.+|.|++..+++++++.+-.+++..+
T Consensus 49 ~~a~La~~~~~~~~A~~ay~~l~~~~ 74 (280)
T PF13429_consen 49 LLADLAWSLGDYDEAIEAYEKLLASD 74 (280)
T ss_dssp --------------------------
T ss_pred cccccccccccccccccccccccccc
Confidence 47788888888888888888888765
No 35
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=55.11 E-value=45 Score=26.35 Aligned_cols=69 Identities=16% Similarity=0.036 Sum_probs=43.6
Q ss_pred hhHHHHHHhhhcchhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhHHHHHHHHHhCChHHHHHHH
Q 027732 122 ESKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLA 201 (219)
Q Consensus 122 eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~lA 201 (219)
+....++-..|-.+.-... .+.|...|++|+.+. |.++.......|.++.+.. .|+.++|+...
T Consensus 32 ~~~a~~~~~~g~~~~~~g~----------~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~-~g~~~eA~~~~ 95 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGE----------YAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTS-NGEHTKALEYY 95 (168)
T ss_pred hHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 3455555555655543321 346788888888663 2333333456677666665 79999999988
Q ss_pred HHHHH
Q 027732 202 KQVRV 206 (219)
Q Consensus 202 k~Afd 206 (219)
++|+.
T Consensus 96 ~~Al~ 100 (168)
T CHL00033 96 FQALE 100 (168)
T ss_pred HHHHH
Confidence 88874
No 36
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=54.89 E-value=28 Score=17.63 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 027732 11 NVYMAKLAEQAERYEEMVEFMEKVAKTV 38 (219)
Q Consensus 11 li~~AklaeqaeRy~dm~~~mk~~i~~~ 38 (219)
+..+|.+..+.++|++++.++.+.+...
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 4567888889999999999999888654
No 37
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=53.57 E-value=38 Score=28.15 Aligned_cols=10 Identities=50% Similarity=0.780 Sum_probs=5.1
Q ss_pred HHHHHHHHHH
Q 027732 153 STLLAYKSAQ 162 (219)
Q Consensus 153 ~a~~aY~~A~ 162 (219)
.|..+|++|+
T Consensus 91 ~A~~a~~~Al 100 (198)
T PRK10370 91 NALLAYRQAL 100 (198)
T ss_pred HHHHHHHHHH
Confidence 3555555554
No 38
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=53.53 E-value=60 Score=21.10 Aligned_cols=45 Identities=16% Similarity=0.154 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhhHHHHHHHHHhCChHHHHHHHHHHH
Q 027732 152 ESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVR 205 (219)
Q Consensus 152 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~lAk~Af 205 (219)
+.|.+.|++++.. +|-...+.++++..|+. .|+.++|..+.+++.
T Consensus 8 ~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 8 DEAIELLEKALQR--------NPDNPEARLLLAQCYLK-QGQYDEAEELLERLL 52 (68)
T ss_dssp HHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 4566677776643 35555666677788887 699999988877654
No 39
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=53.42 E-value=29 Score=22.62 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 027732 8 REENVYMAKLAEQAERYEEMVEFMEKVAKTV 38 (219)
Q Consensus 8 r~~li~~AklaeqaeRy~dm~~~mk~~i~~~ 38 (219)
.+-+..++.+..+.|+|++++..+.++++..
T Consensus 31 ~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 31 PEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4566788999999999999999999999876
No 40
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=52.77 E-value=11 Score=26.29 Aligned_cols=44 Identities=11% Similarity=0.110 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhcCCCCCcchhhhhhHHHHHHHHHhCChHHHHHHHH
Q 027732 156 LAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAK 202 (219)
Q Consensus 156 ~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~lAk 202 (219)
.-|.+|+++.++ .+.+|..+....-++--+++ +|+.++|+..-+
T Consensus 39 ~~y~~A~~~~~~--~~~~~~~~~~~~l~a~~~~~-l~~y~eAi~~l~ 82 (84)
T PF12895_consen 39 GKYEEAIELLQK--LKLDPSNPDIHYLLARCLLK-LGKYEEAIKALE 82 (84)
T ss_dssp THHHHHHHHHHC--HTHHHCHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred CCHHHHHHHHHH--hCCCCCCHHHHHHHHHHHHH-hCCHHHHHHHHh
Confidence 335555555543 33333333333333333333 555555555443
No 41
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=51.91 E-value=50 Score=27.39 Aligned_cols=73 Identities=21% Similarity=0.234 Sum_probs=46.0
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027732 41 EELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSVIKEYRSKIENELSKICDGILSLLESHL 114 (219)
Q Consensus 41 ~~L~~eERnLlsvayKn~i~~~R~s~R~l~~ieq~~~~~~~~~~~~~i~~y~~ki~~EL~~~c~eii~lid~~L 114 (219)
|++|.|-|.=|....|...-..|.+.|.+..--.+.- +........-++-.++.++|+..+.++.+.-||..+
T Consensus 99 P~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~~~~~l-Kk~~k~~~iseD~~k~~~~~iqkltd~~i~~id~~~ 171 (179)
T cd00520 99 PPLTEERRKELVKDAKKIAEEAKVAIRNIRRDANDKI-KKLEKEKEISEDEVKKAEEDLQKLTDEYIKKIDELL 171 (179)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999998889988888888888753111110 000000001234455667777777777777777654
No 42
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=51.53 E-value=56 Score=27.12 Aligned_cols=73 Identities=16% Similarity=0.239 Sum_probs=46.8
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027732 41 EELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSVIKEYRSKIENELSKICDGILSLLESHL 114 (219)
Q Consensus 41 ~~L~~eERnLlsvayKn~i~~~R~s~R~l~~ieq~~~~~~~~~~~~~i~~y~~ki~~EL~~~c~eii~lid~~L 114 (219)
|+||.|-|.=|....|...-..|.++|-+..--.+.- +.....-..-++-..++++++..+.++.+.-||..+
T Consensus 94 P~lT~E~RkelvK~~k~~~E~aKv~iRniRr~~~~~i-Kk~~k~~~iseD~~k~~~~~iQkltd~~i~~id~~~ 166 (176)
T TIGR00496 94 PPLTEERRKELVKHAKKIAEQAKVAVRNVRRDANDKV-KKLEKDKEISEDEERRLQEEIQKLTDEYIKKIDEIL 166 (176)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999998888999888853111100 000000012245556677777777777777777654
No 43
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=51.33 E-value=1.1e+02 Score=23.52 Aligned_cols=30 Identities=23% Similarity=0.226 Sum_probs=21.3
Q ss_pred hHHHHHHhhhcchhhhhhhcCchhHHHHHHHHHHHHHHHH
Q 027732 123 SKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLLAYKSAQ 162 (219)
Q Consensus 123 skvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~ 162 (219)
.+-+++-++||.|.-. |+ .+.|..+|++|+
T Consensus 116 ~~~~~~~~~Gdi~~~~-----g~-----~~~A~~~y~~Al 145 (145)
T PF09976_consen 116 FKALAAELLGDIYLAQ-----GD-----YDEARAAYQKAL 145 (145)
T ss_pred hHHHHHHHHHHHHHHC-----CC-----HHHHHHHHHHhC
Confidence 4566788999977432 22 567899999884
No 44
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=49.63 E-value=63 Score=27.04 Aligned_cols=73 Identities=19% Similarity=0.221 Sum_probs=46.5
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027732 41 EELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSVIKEYRSKIENELSKICDGILSLLESHL 114 (219)
Q Consensus 41 ~~L~~eERnLlsvayKn~i~~~R~s~R~l~~ieq~~~~~~~~~~~~~i~~y~~ki~~EL~~~c~eii~lid~~L 114 (219)
|+||.|-|.=|....|...-.-|.+.|.+..--.+.-.+ ....-..-++-.++.++|+..+.++.+.-||..+
T Consensus 103 P~lT~E~R~elvK~~k~~~E~aKv~iRniRr~~~~~iKk-~~k~~~iseD~~k~~e~eiQkltd~~i~~id~~~ 175 (185)
T PRK00083 103 PPLTEERRKELVKQVKKEAEEAKVAIRNIRRDANDKLKK-LEKDKEISEDELKRAEDEIQKLTDKYIKKIDELL 175 (185)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999889999888888988885321111000 0000011244456667777777777777777654
No 45
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=47.89 E-value=54 Score=26.06 Aligned_cols=50 Identities=18% Similarity=0.161 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhhHHHHHHHHHhCChHHHHHHHHHHHHH
Q 027732 152 ESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVRVA 207 (219)
Q Consensus 152 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~lAk~Afd~ 207 (219)
+.|...|++|+.+.. .+|-..-...|.++-++. +|+.++|+...++|++-
T Consensus 52 ~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 52 AEALENYEEALKLEE-----DPNDRSYILYNMGIIYAS-NGEHDKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 467888888876542 222223355667776665 78999988887777663
No 46
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=47.74 E-value=3.7e+02 Score=28.51 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 027732 10 ENVYMAKLAEQAERYEEMVEFMEKVAKTV 38 (219)
Q Consensus 10 ~li~~AklaeqaeRy~dm~~~mk~~i~~~ 38 (219)
..+.+|++.-..|+|++++..++++++.+
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~ 142 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNGA 142 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccCC
Confidence 45888999999999999999999998765
No 47
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=47.50 E-value=99 Score=21.85 Aligned_cols=46 Identities=17% Similarity=0.171 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 027732 10 ENVYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAY 55 (219)
Q Consensus 10 ~li~~AklaeqaeRy~dm~~~mk~~i~~~~~~~L~~eERnLlsvay 55 (219)
.+...+....+.|+|+++++.+.+++..+++..+..+-+..++.+|
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 49 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAY 49 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3444555566666666666666666655421234444444444443
No 48
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=47.46 E-value=27 Score=24.24 Aligned_cols=45 Identities=20% Similarity=0.428 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhhHHHHHHHHHhCChHHHHHHHHH
Q 027732 152 ESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQ 203 (219)
Q Consensus 152 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~lAk~ 203 (219)
+.|...|+++++.. |++| .-...++.+.-||. .|+.++|+.+.++
T Consensus 6 ~~Ai~~~~k~~~~~-----~~~~-~~~~~~~la~~~~~-~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 6 ENAIKYYEKLLELD-----PTNP-NSAYLYNLAQCYFQ-QGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHHHHHHHH-----CGTH-HHHHHHHHHHHHHH-TTHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHC-----CCCh-hHHHHHHHHHHHHH-CCCHHHHHHHHHH
Confidence 34555555555433 3344 44566777777887 6999999999876
No 49
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=46.32 E-value=43 Score=34.83 Aligned_cols=80 Identities=11% Similarity=-0.024 Sum_probs=50.0
Q ss_pred CCCCchhHHHHHHhhhcchhh------hhhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhHHHHHHHHH
Q 027732 117 SASSAESKVFYLKMKGDYHRY------LAEFKTGAERKEAAESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEI 190 (219)
Q Consensus 117 ~~~~~eskvfy~KmkgDyyRY------laE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi 190 (219)
.........||++..|||+.- +|++-. +-.-.++|..+|+++++ +.|.||. +||+=-|+|.-
T Consensus 95 ~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Yd---k~g~~~ka~~~yer~L~-----~D~~n~~----aLNn~AY~~ae 162 (906)
T PRK14720 95 QNLKWAIVEHICDKILLYGENKLALRTLAEAYA---KLNENKKLKGVWERLVK-----ADRDNPE----IVKKLATSYEE 162 (906)
T ss_pred cccchhHHHHHHHHHHhhhhhhHHHHHHHHHHH---HcCChHHHHHHHHHHHh-----cCcccHH----HHHHHHHHHHH
Confidence 333345556666677766532 233321 11235578888888875 3477764 56654555555
Q ss_pred hCChHHHHHHHHHHHHHHH
Q 027732 191 LNSPDRACNLAKQVRVAAL 209 (219)
Q Consensus 191 ~~~~~~A~~lAk~Afd~Ai 209 (219)
. +.++|.+++++|+.--|
T Consensus 163 ~-dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 163 E-DKEKAITYLKKAIYRFI 180 (906)
T ss_pred h-hHHHHHHHHHHHHHHHH
Confidence 5 99999999999987544
No 50
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=46.31 E-value=94 Score=21.98 Aligned_cols=47 Identities=9% Similarity=0.109 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHh
Q 027732 10 ENVYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYK 56 (219)
Q Consensus 10 ~li~~AklaeqaeRy~dm~~~mk~~i~~~~~~~L~~eERnLlsvayK 56 (219)
-...++.+..+.|+|++++..++.++...++.....+=...+..+|.
T Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 41 AHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence 34566777777777777777777777654212233333444444443
No 51
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=45.39 E-value=1.5e+02 Score=24.44 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhhhh
Q 027732 26 EMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGA 61 (219)
Q Consensus 26 dm~~~mk~~i~~~~~~~L~~eERnLlsvayKn~i~~ 61 (219)
..++..+++++.. .+||.+|++.|..+...++-.
T Consensus 83 ~~L~aa~el~ee~--eeLs~deke~~~~sl~dL~~d 116 (158)
T PF10083_consen 83 NALEAANELIEED--EELSPDEKEQFKESLPDLTKD 116 (158)
T ss_pred HHHHHHHHHHHHh--hcCCHHHHHHHHhhhHHHhhc
Confidence 4567778888866 899999999999999887643
No 52
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=45.39 E-value=2e+02 Score=24.66 Aligned_cols=83 Identities=25% Similarity=0.364 Sum_probs=48.0
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHh-hhhhhhhcCCchhHHHHHHH
Q 027732 13 YMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRIISS-IEQKEESRGNEDHVSVIKEY 91 (219)
Q Consensus 13 ~~AklaeqaeRy~dm~~~mk~~i~~~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~-ieq~~~~~~~~~~~~~i~~y 91 (219)
|++++..+..||+-+-.....-+ +..++|..-+-..++.-+...+..+|--.. +..-+ ..+ .-
T Consensus 123 y~~~l~~~eqry~aLK~hAeekL------~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe---------~~L-eQ 186 (207)
T PF05010_consen 123 YEERLKKEEQRYQALKAHAEEKL------EKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLE---------ESL-EQ 186 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---------HHH-HH
Confidence 56777777777766544433322 334677777777777777777777776421 00000 000 11
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 027732 92 RSKIENELSKICDGILSLLE 111 (219)
Q Consensus 92 ~~ki~~EL~~~c~eii~lid 111 (219)
+.+=..||..||+|+|.-++
T Consensus 187 K~kEn~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 187 KTKENEELTKICDELISKMG 206 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 22335799999999987543
No 53
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=41.99 E-value=97 Score=20.17 Aligned_cols=46 Identities=26% Similarity=0.330 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhh
Q 027732 9 EENVYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKN 57 (219)
Q Consensus 9 ~~li~~AklaeqaeRy~dm~~~mk~~i~~~~~~~L~~eERnLlsvayKn 57 (219)
+.+..+|.++.+.|+|++++.++++.++.+ |. +.+=..-++.+|..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~-~~~~~~~~g~~~~~ 49 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PN-NAEAYYNLGLAYMK 49 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC-CHHHHHHHHHHHHH
Confidence 346678999999999999999999999886 44 23333444444433
No 54
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=41.83 E-value=46 Score=21.68 Aligned_cols=53 Identities=21% Similarity=0.391 Sum_probs=33.4
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhh
Q 027732 20 QAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKE 76 (219)
Q Consensus 20 qaeRy~dm~~~mk~~i~~~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~ieq~~ 76 (219)
+.|+|++++..+++++..+ |+ +.+=+-.+..+|-.. |..-.|.+++..+....
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~-~~~~~~~la~~~~~~-g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PD-NPEARLLLAQCYLKQ-GQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TT-SHHHHHHHHHHHHHT-T-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHC
Confidence 4577777777777777765 44 566666666666543 56666667776655554
No 55
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=41.79 E-value=28 Score=23.30 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhc
Q 027732 195 DRACNLAKQVRVAALLFLSFFLSF 218 (219)
Q Consensus 195 ~~A~~lAk~Afd~Ai~~ld~~~~~ 218 (219)
++|.+|||+|+.+...--|..+..
T Consensus 12 e~aa~iAk~A~~~g~svre~v~~~ 35 (55)
T PF10415_consen 12 EKAAEIAKEALAEGRSVREVVLEE 35 (55)
T ss_dssp HHHHHHHHHHHHHT--HHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHc
Confidence 589999999998877665555543
No 56
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=40.94 E-value=2e+02 Score=23.54 Aligned_cols=64 Identities=19% Similarity=0.172 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHhhh
Q 027732 9 EENVYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRIISSIE 73 (219)
Q Consensus 9 ~~li~~AklaeqaeRy~dm~~~mk~~i~~~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~ie 73 (219)
+.+..++...-+.|+|++++..+.+++..++......+-+..+..+|-.. +....+...+....
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~-~~~~~A~~~~~~~l 97 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKS-GDYAEAIAAADRFI 97 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHH
Confidence 56778888888999999999999999987621223344455565555442 44555555555443
No 57
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=40.01 E-value=1.3e+02 Score=23.14 Aligned_cols=50 Identities=18% Similarity=0.132 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhhHHHHHHHHHhCChHHHHHHHHHHHHH
Q 027732 152 ESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVRVA 207 (219)
Q Consensus 152 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~lAk~Afd~ 207 (219)
+.|...|++|++. .|+ .|.|-+..++.+--+- .+|++++|..+-+++..+
T Consensus 18 ~~Ai~~Y~~Al~~---gL~--~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 18 EEAIPLYRRALAA---GLS--GADRRRALIQLASTLR-NLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHHHHHHHHc---CCC--chHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Confidence 4678888888652 344 4455555556655444 479999998888888765
No 58
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=37.59 E-value=63 Score=29.41 Aligned_cols=24 Identities=13% Similarity=-0.025 Sum_probs=11.6
Q ss_pred hHHHHHHHHHhCChHHHHHHHHHHH
Q 027732 181 LNFSVFYYEILNSPDRACNLAKQVR 205 (219)
Q Consensus 181 LN~SVF~yEi~~~~~~A~~lAk~Af 205 (219)
++.++.++. +|+.+.|+...++|.
T Consensus 74 ~~lg~~~~~-lg~~~eA~~~~~~al 97 (356)
T PLN03088 74 LRKGTACMK-LEEYQTAKAALEKGA 97 (356)
T ss_pred HHHHHHHHH-hCCHHHHHHHHHHHH
Confidence 333444443 456555555544444
No 59
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=37.29 E-value=64 Score=21.30 Aligned_cols=29 Identities=28% Similarity=0.209 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 027732 10 ENVYMAKLAEQAERYEEMVEFMEKVAKTV 38 (219)
Q Consensus 10 ~li~~AklaeqaeRy~dm~~~mk~~i~~~ 38 (219)
-+..+|.+..+.|+|+++++.+.++++.+
T Consensus 31 ~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 31 LWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred hhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 34567777778888888888888877665
No 60
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=36.86 E-value=1.4e+02 Score=20.54 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 027732 9 EENVYMAKLAEQAERYEEMVEFMEKVAK 36 (219)
Q Consensus 9 ~~li~~AklaeqaeRy~dm~~~mk~~i~ 36 (219)
-+++-.|--.++.|+|++++.+..+.++
T Consensus 7 ~~l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 7 KELIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3466677777889999999999888875
No 61
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=35.46 E-value=1.7e+02 Score=24.02 Aligned_cols=50 Identities=14% Similarity=0.107 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q 027732 148 KEAAESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVRVAALL 210 (219)
Q Consensus 148 ~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~lAk~Afd~Ai~ 210 (219)
..--+.|.++|..|.. |.|.||- ...|.++-+.- +|+.+.|. ++|+.||.
T Consensus 82 ~g~~~~AI~aY~~A~~-----L~~ddp~---~~~~ag~c~L~-lG~~~~A~----~aF~~Ai~ 131 (157)
T PRK15363 82 QKHWGEAIYAYGRAAQ-----IKIDAPQ---APWAAAECYLA-CDNVCYAI----KALKAVVR 131 (157)
T ss_pred HhhHHHHHHHHHHHHh-----cCCCCch---HHHHHHHHHHH-cCCHHHHH----HHHHHHHH
Confidence 3446678888888874 5556663 25666666664 79988774 55665554
No 62
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=35.37 E-value=1.7e+02 Score=22.70 Aligned_cols=48 Identities=17% Similarity=0.148 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhhhhHHHHHHHHHhCChHHHHHHHHHHHHH
Q 027732 151 AESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVRVA 207 (219)
Q Consensus 151 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~lAk~Afd~ 207 (219)
.+.|..+|+.|+. +.|.||- ...|.++-+. -+|++++|+....+|..-
T Consensus 74 ~~~A~~~y~~Al~-----l~p~~~~---a~~~lg~~l~-~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 74 YTTAINFYGHALM-----LDASHPE---PVYQTGVCLK-MMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHHHh-----cCCCCcH---HHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 4568888888875 4555552 2233344334 489999999888887653
No 63
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=33.99 E-value=1.5e+02 Score=21.77 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhhHHHHHHHHHhCChHHHHHHHHHHHHH
Q 027732 152 ESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVRVA 207 (219)
Q Consensus 152 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~lAk~Afd~ 207 (219)
+.|...|++++.+ .|++ .....+.+..++ ..|+.++|+..-++++.-
T Consensus 68 ~~A~~~~~~~~~~-----~p~~---~~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 68 EEAIDAYALAAAL-----DPDD---PRPYFHAAECLL-ALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHHHhc-----CCCC---hHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 4567777776653 3343 444566777655 479999999988877653
No 64
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=33.26 E-value=79 Score=20.17 Aligned_cols=40 Identities=25% Similarity=0.243 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 027732 12 VYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLS 52 (219)
Q Consensus 12 i~~AklaeqaeRy~dm~~~mk~~i~~~~~~~L~~eERnLls 52 (219)
+.+|+..-..|.++.+-+.+.+++..+ .++.-.+=+.||.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~-~~~q~~eA~~LL~ 42 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG-DEAQRQEARALLA 42 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC-CHHHHHHHHHHHh
Confidence 468999999999999999999999654 1444455555553
No 65
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=32.65 E-value=70 Score=28.20 Aligned_cols=46 Identities=17% Similarity=0.254 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhhhhHHHHHHHHHhCChHHHHHHHHHHH
Q 027732 151 AESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVR 205 (219)
Q Consensus 151 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~lAk~Af 205 (219)
.+.|.+.|++|+.++ |=.=-+--||.-|++. .|.+++|...-.+|.
T Consensus 85 ~~~A~e~YrkAlsl~--------p~~GdVLNNYG~FLC~-qg~~~eA~q~F~~Al 130 (250)
T COG3063 85 NDLADESYRKALSLA--------PNNGDVLNNYGAFLCA-QGRPEEAMQQFERAL 130 (250)
T ss_pred hhhHHHHHHHHHhcC--------CCccchhhhhhHHHHh-CCChHHHHHHHHHHH
Confidence 567899999998654 2223345689999998 579999876644443
No 66
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=32.62 E-value=1.3e+02 Score=27.03 Aligned_cols=58 Identities=12% Similarity=0.065 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHhcCC----------CCCcchhhhhhHHHHHHHHHhCChHHHHHHHHHHHHHHH
Q 027732 151 AESTLLAYKSAQDIALAELA----------PTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVRVAAL 209 (219)
Q Consensus 151 ~~~a~~aY~~A~~~a~~~L~----------pt~pirLgL~LN~SVF~yEi~~~~~~A~~lAk~Afd~Ai 209 (219)
+....+.|.+++........ .+.-..|-+.+++++|..+ .|.++.|+.+.|..++-..
T Consensus 118 v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~-aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 118 VSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQ-AGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHH-CCchHHHHHHHHHHHHHHc
Confidence 45667777777776643322 3355788899999999998 6999999999988766443
No 67
>PF08717 nsp8: nsp8 replicase; InterPro: IPR014829 Viral Nsp8 (non structural protein 8) forms a hexadecameric supercomplex with Nsp7 that adopts a hollow cylinder-like structure []. The dimensions of the central channel and positive electrostatic properties of the cylinder imply that it confers processivity on RNA-dependent RNA polymerase []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 2AHM_F 3UB0_D.
Probab=31.18 E-value=58 Score=27.64 Aligned_cols=38 Identities=26% Similarity=0.231 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhhhhHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 027732 151 AESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVRVAA 208 (219)
Q Consensus 151 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~lAk~Afd~A 208 (219)
-+.|.++|++|.+-. -+ | ..++...+|+.|||..||.=
T Consensus 15 Ye~A~~~Ye~av~ng---~~---~--------------q~~Kql~KA~NIAKse~drd 52 (199)
T PF08717_consen 15 YETARQAYEEAVANG---SS---P--------------QELKQLKKAMNIAKSEFDRD 52 (199)
T ss_dssp HHHHHHHHHHHHHCT--------H--------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC---CC---H--------------HHHHHHHHHHhHHHHHHhHH
Confidence 467899999987521 11 1 13577889999999999853
No 68
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=31.16 E-value=1.3e+02 Score=25.42 Aligned_cols=67 Identities=27% Similarity=0.272 Sum_probs=38.3
Q ss_pred hhhhhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCCc---chhhhhhHHHHHHHHHhCChHHHHH---HHHHHHHHHH
Q 027732 136 RYLAEFKTGAERKEAAESTLLAYKSAQDIALAELAPTHP---IRLGLALNFSVFYYEILNSPDRACN---LAKQVRVAAL 209 (219)
Q Consensus 136 RYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~p---irLgL~LN~SVF~yEi~~~~~~A~~---lAk~Afd~Ai 209 (219)
-=++-+..+.+.+++++.|..-|++|+.+- |..+ .-||.|+--=-|+ ..+..+|-. .|..-|+.|+
T Consensus 36 LELAqfk~g~es~~miedAisK~eeAL~I~-----P~~hdAlw~lGnA~ts~A~l---~~d~~~A~~~F~kA~~~FqkAv 107 (186)
T PF06552_consen 36 LELAQFKQGPESKKMIEDAISKFEEALKIN-----PNKHDALWCLGNAYTSLAFL---TPDTAEAEEYFEKATEYFQKAV 107 (186)
T ss_dssp HHHHHHS-HHHHHHHHHHHHHHHHHHHHH------TT-HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCcchHHHHHHHHHHHHHHHHhcC-----CchHHHHHHHHHHHHHHHhh---cCChHHHHHHHHHHHHHHHHHH
Confidence 335667777788888899999999988653 2222 3455555444443 345555544 5555577666
Q ss_pred H
Q 027732 210 L 210 (219)
Q Consensus 210 ~ 210 (219)
.
T Consensus 108 ~ 108 (186)
T PF06552_consen 108 D 108 (186)
T ss_dssp H
T ss_pred h
Confidence 4
No 69
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=30.90 E-value=2.5e+02 Score=21.61 Aligned_cols=61 Identities=21% Similarity=0.370 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhhhhhhhHHHHH
Q 027732 8 REENVYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRII 69 (219)
Q Consensus 8 r~~li~~AklaeqaeRy~dm~~~mk~~i~~~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l 69 (219)
+.-+|.++...-..||+++++..+++.+...++.+++..=+-++..+.-| .+..+.+++.+
T Consensus 38 ~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~-~gr~~eAl~~~ 98 (120)
T PF12688_consen 38 RRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN-LGRPKEALEWL 98 (120)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence 45677888989999999999999999987653356777766666665544 56666676666
No 70
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=30.44 E-value=1.1e+02 Score=32.21 Aligned_cols=52 Identities=17% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHh--cCCCCCcchhhhhhHHHHHHHHHhCChHHHHHHHHHHHHHHHHh
Q 027732 156 LAYKSAQDIALA--ELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVRVAALLF 211 (219)
Q Consensus 156 ~aY~~A~~~a~~--~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~lAk~Afd~Ai~~ 211 (219)
++|+.|+.+-.. ...|.||+-|...-|+=+| -+|.+.++.+|-.|+..+...
T Consensus 250 ~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf----K~dy~~v~~la~~ai~~t~~~ 303 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKENNENPVALNHLANHFYF----KKDYERVWHLAEHAIKNTENK 303 (1018)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh----cccHHHHHHHHHHHHHhhhhh
No 71
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=29.90 E-value=3.9e+02 Score=23.51 Aligned_cols=26 Identities=15% Similarity=0.155 Sum_probs=15.5
Q ss_pred hHHHHHHHHHhCChHHHHHHHHHHHHH
Q 027732 181 LNFSVFYYEILNSPDRACNLAKQVRVA 207 (219)
Q Consensus 181 LN~SVF~yEi~~~~~~A~~lAk~Afd~ 207 (219)
++.+..+. -.|+.++|..+.++++..
T Consensus 286 ~~la~~~~-~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 286 LALAQLLE-EQEGPEAAQALLREQLRR 311 (389)
T ss_pred HHHHHHHH-HhCCHHHHHHHHHHHHHh
Confidence 33333333 357777777777776654
No 72
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=29.66 E-value=5.3e+02 Score=25.06 Aligned_cols=61 Identities=18% Similarity=0.197 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCC------CCcchhhhhhHHHHHHHHHhCChHHHHHHHHHHHH
Q 027732 145 AERKEAAESTLLAYKSAQDIALAELAP------THPIRLGLALNFSVFYYEILNSPDRACNLAKQVRV 206 (219)
Q Consensus 145 ~~~~~~~~~a~~aY~~A~~~a~~~L~p------t~pirLgL~LN~SVF~yEi~~~~~~A~~lAk~Afd 206 (219)
..+..+++.-..-|...++... .+++ ..|.-+--++.|-.-+|+.+|+.++|.+...+|++
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~-~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ 222 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNG-SFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE 222 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccC-CCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 4566677777777776655432 3332 34666777788878889999999999888776654
No 73
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=29.00 E-value=1.4e+02 Score=24.70 Aligned_cols=75 Identities=12% Similarity=0.059 Sum_probs=44.5
Q ss_pred HHHHHHHHHH-HHHhCC--HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhcCCchh
Q 027732 8 REENVYMAKL-AEQAER--YEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDH 84 (219)
Q Consensus 8 r~~li~~Akl-aeqaeR--y~dm~~~mk~~i~~~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~ieq~~~~~~~~~~ 84 (219)
-+-+..+|.+ ..+.|+ ++++...+.+++..+ +. +.+=+.+|..++-. .+....|......+-+.... ++.+
T Consensus 107 ~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d--P~-~~~al~~LA~~~~~-~g~~~~Ai~~~~~aL~l~~~--~~~r 180 (198)
T PRK10370 107 AELYAALATVLYYQAGQHMTPQTREMIDKALALD--AN-EVTALMLLASDAFM-QADYAQAIELWQKVLDLNSP--RVNR 180 (198)
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC--CC-ChhHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCC--CccH
Confidence 3455667775 467777 588999998888776 44 35566677666643 45555555555443333322 2344
Q ss_pred HHHH
Q 027732 85 VSVI 88 (219)
Q Consensus 85 ~~~i 88 (219)
...|
T Consensus 181 ~~~i 184 (198)
T PRK10370 181 TQLV 184 (198)
T ss_pred HHHH
Confidence 5555
No 74
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=28.52 E-value=5.6e+02 Score=24.98 Aligned_cols=82 Identities=4% Similarity=0.111 Sum_probs=41.5
Q ss_pred hCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHHH
Q 027732 21 AERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSVIKEYRSKIENELS 100 (219)
Q Consensus 21 aeRy~dm~~~mk~~i~~~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~ieq~~~~~~~~~~~~~i~~y~~ki~~EL~ 100 (219)
..+|.-.+.-+|..++....|.++.+=...|..+...+- .+.+.-. ..+-....+...-..+.+.+.
T Consensus 416 l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i~-----------~l~~~L~--~~pinm~~v~~~l~~a~~~v~ 482 (560)
T PF06160_consen 416 LQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDEIE-----------ELSDELN--QVPINMDEVNKQLEEAEDDVE 482 (560)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH-----------HHHHHHh--cCCcCHHHHHHHHHHHHHHHH
Confidence 344555556666666543335565555555555543321 1111111 123344555666666666666
Q ss_pred HHHHHHHHHHhhccc
Q 027732 101 KICDGILSLLESHLI 115 (219)
Q Consensus 101 ~~c~eii~lid~~Li 115 (219)
.+...+-++|++..+
T Consensus 483 ~L~~~t~~li~~A~L 497 (560)
T PF06160_consen 483 TLEEKTEELIDNATL 497 (560)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666665443
No 75
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=28.38 E-value=90 Score=28.73 Aligned_cols=41 Identities=15% Similarity=0.221 Sum_probs=33.0
Q ss_pred hhhhhhHHHHHHHHHhCChHHHHHHHHHHHHHHHH---hhhhhhh
Q 027732 176 RLGLALNFSVFYYEILNSPDRACNLAKQVRVAALL---FLSFFLS 217 (219)
Q Consensus 176 rLgL~LN~SVF~yEi~~~~~~A~~lAk~Afd~Ai~---~ld~~~~ 217 (219)
-+..--|-+=||-.| +|.+.+.+...+.|.+|+. .+|.||+
T Consensus 114 ~~ea~~n~aeyY~qi-~D~~ng~~~~~~~~~~a~stg~KiDv~l~ 157 (412)
T COG5187 114 GSEADRNIAEYYCQI-MDIQNGFEWMRRLMRDAMSTGLKIDVFLC 157 (412)
T ss_pred HHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHhcccchhhHHH
Confidence 345667888888876 7899999999999999997 5666654
No 76
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=27.93 E-value=4e+02 Score=23.09 Aligned_cols=163 Identities=12% Similarity=0.041 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHh---------hhhhhhhhHHHHHHhhhhhh
Q 027732 6 SSREENVYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYK---------NVIGARRASWRIISSIEQKE 76 (219)
Q Consensus 6 ~~r~~li~~AklaeqaeRy~dm~~~mk~~i~~~~~~~L~~eERnLlsvayK---------n~i~~~R~s~R~l~~ieq~~ 76 (219)
+.++.....|-++-+.|+++++...+.++++.. |.-. .++. ...+.....-+.+.......
T Consensus 41 ~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~--------~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 110 (355)
T cd05804 41 TERERAHVEALSAWIAGDLPKALALLEQLLDDY--PRDL--------LALKLHLGAFGLGDFSGMRDHVARVLPLWAPEN 110 (355)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcH--------HHHHHhHHHHHhcccccCchhHHHHHhccCcCC
Q ss_pred hhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHhhhcchhhhhhhcCchhHHHHHHHHHH
Q 027732 77 ESRGNEDHVSVIKEYRSKIENELSKICDGILSLLESHLIPSASSAESKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLL 156 (219)
Q Consensus 77 ~~~~~~~~~~~i~~y~~ki~~EL~~~c~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~ 156 (219)
.....-......-.....--++-...++..+.+-.+. ...+-+.|..|.-.-+ .+.|..
T Consensus 111 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~-----------~~~~~~la~i~~~~g~----------~~eA~~ 169 (355)
T cd05804 111 PDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD-----------AWAVHAVAHVLEMQGR----------FKEGIA 169 (355)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----------cHHHHHHHHHHHHcCC----------HHHHHH
Q ss_pred HHHHHHHHHHhcCCCCCcchhhhhhHHHHHHHHHhCChHHHHHHHHHH
Q 027732 157 AYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQV 204 (219)
Q Consensus 157 aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~lAk~A 204 (219)
.|++++..... ....+.....+.+.++.+ .|+.++|..+.+++
T Consensus 170 ~l~~~l~~~~~----~~~~~~~~~~~la~~~~~-~G~~~~A~~~~~~~ 212 (355)
T cd05804 170 FMESWRDTWDC----SSMLRGHNWWHLALFYLE-RGDYEAALAIYDTH 212 (355)
T ss_pred HHHhhhhccCC----CcchhHHHHHHHHHHHHH-CCCHHHHHHHHHHH
No 77
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=27.45 E-value=6.1e+02 Score=25.05 Aligned_cols=28 Identities=11% Similarity=0.245 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 027732 11 NVYMAKLAEQAERYEEMVEFMEKVAKTV 38 (219)
Q Consensus 11 li~~AklaeqaeRy~dm~~~mk~~i~~~ 38 (219)
+..++.+..+.|++++++..+++.+..+
T Consensus 113 ~~~la~~l~~~g~~~~Ai~~l~~Al~l~ 140 (656)
T PRK15174 113 VLLVASVLLKSKQYATVADLAEQAWLAF 140 (656)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4556666667777777777777777655
No 78
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=27.26 E-value=97 Score=30.96 Aligned_cols=68 Identities=13% Similarity=0.083 Sum_probs=40.6
Q ss_pred HhhhcchhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhHHHHHHHHHhCChHHHHHHHHHHH
Q 027732 129 KMKGDYHRYLAEFKTGAERKEAAESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVR 205 (219)
Q Consensus 129 KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~lAk~Af 205 (219)
++-++.||-+.....---|++--+.|+-.|++|++ +||.-.-+.--.+.++.. +|..++|+++-++|+
T Consensus 483 ~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--------INP~nsvi~~~~g~~~~~-~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 483 GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--------INPSNSVILCHIGRIQHQ-LKRKDKALQLYEKAI 550 (638)
T ss_pred cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--------CCccchhHHhhhhHHHHH-hhhhhHHHHHHHHHH
Confidence 34445554444333222233334455555555543 456666666666777776 799999999998885
No 79
>PRK11820 hypothetical protein; Provisional
Probab=26.90 E-value=86 Score=28.12 Aligned_cols=59 Identities=20% Similarity=0.013 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhcCCCCCcchhhhhhHHH-HHHHHHhCChHHHHHHHHHHHHHHHHhhhh
Q 027732 155 LLAYKSAQDIALAELAPTHPIRLGLALNFS-VFYYEILNSPDRACNLAKQVRVAALLFLSF 214 (219)
Q Consensus 155 ~~aY~~A~~~a~~~L~pt~pirLgL~LN~S-VF~yEi~~~~~~A~~lAk~Afd~Ai~~ld~ 214 (219)
.++|-+++.-....++...|+.|.-.|.+. |+. +-..+.+..-....+|+++|++.|..
T Consensus 85 ~~~y~~~l~~l~~~~~~~~~~~l~~ll~~p~v~~-~~~~~~~~~~~~l~~al~~AL~~l~~ 144 (288)
T PRK11820 85 AKQYLEALEELKAELPEAGEISLDDLLRWPGVLE-AEEEDLEALWAALLAALDEALDDLIE 144 (288)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHhCCCCccc-CCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 456666664444466544699999888874 533 22335666667888999999998764
No 80
>PF08899 DUF1844: Domain of unknown function (DUF1844); InterPro: IPR014995 This group of proteins are functionally uncharacterised.
Probab=26.71 E-value=2.1e+02 Score=20.54 Aligned_cols=29 Identities=28% Similarity=0.365 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHh
Q 027732 24 YEEMVEFMEKVAKTVDVEELTVEERNLLSVAYK 56 (219)
Q Consensus 24 y~dm~~~mk~~i~~~~~~~L~~eERnLlsvayK 56 (219)
.=|++..++. .+. +.|+.+|+.+|..+.-
T Consensus 40 tID~L~mL~e--KTk--GNL~~~E~~lL~~~L~ 68 (74)
T PF08899_consen 40 TIDLLAMLQE--KTK--GNLDEEEERLLESALY 68 (74)
T ss_pred HHHHHHHHHH--HHc--cCCCHHHHHHHHHHHH
Confidence 3477766655 345 8999999999976643
No 81
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=26.68 E-value=6.8e+02 Score=25.31 Aligned_cols=34 Identities=18% Similarity=0.177 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCC
Q 027732 8 REENVYMAKLAEQAERYEEMVEFMEKVAKTVDVEEL 43 (219)
Q Consensus 8 r~~li~~AklaeqaeRy~dm~~~mk~~i~~~~~~~L 43 (219)
-+-+.-+|.+..+.|||||+......+++.. |+.
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~ 119 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRF--PDS 119 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCc
Confidence 3456778999999999999999999999876 554
No 82
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=26.33 E-value=1.1e+02 Score=28.44 Aligned_cols=45 Identities=20% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhh
Q 027732 12 VYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNV 58 (219)
Q Consensus 12 i~~AklaeqaeRy~dm~~~mk~~i~~~~~~~L~~eERnLlsvayKn~ 58 (219)
|-+.+|.-+-|.|+-+|+....+.+.+ +++..|--..|..||..+
T Consensus 218 i~lG~v~~~~g~y~~AV~~~e~v~eQn--~~yl~evl~~L~~~Y~~l 262 (389)
T COG2956 218 IILGRVELAKGDYQKAVEALERVLEQN--PEYLSEVLEMLYECYAQL 262 (389)
T ss_pred hhhhHHHHhccchHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHHh
No 83
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=26.28 E-value=3.7e+02 Score=22.06 Aligned_cols=43 Identities=21% Similarity=0.189 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 027732 10 ENVYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLS 52 (219)
Q Consensus 10 ~li~~AklaeqaeRy~dm~~~mk~~i~~~~~~~L~~eERnLls 52 (219)
.+-..|.-.-+.|+|++++..++.++...+..++..+-.-.+.
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la 49 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLA 49 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 3444455555555555555555555544322344444333333
No 84
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=26.13 E-value=1.2e+02 Score=21.69 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 027732 10 ENVYMAKLAEQAERYEEMVEFMEKVAK 36 (219)
Q Consensus 10 ~li~~AklaeqaeRy~dm~~~mk~~i~ 36 (219)
.++..|--+++.|||++++.+-+..|+
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 456677778889999999888777664
No 85
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=26.12 E-value=8.1e+02 Score=25.99 Aligned_cols=55 Identities=9% Similarity=-0.103 Sum_probs=34.3
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHh
Q 027732 13 YMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRIISS 71 (219)
Q Consensus 13 ~~AklaeqaeRy~dm~~~mk~~i~~~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~ 71 (219)
.++.++-..|++++++..+++++... |.- ..=...|..+|.. .+....+.+.+..
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~--P~~-~~a~~~Lg~~~~~-~g~~~eA~~~y~~ 410 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD--NTD-SYAVLGLGDVAMA-RKDYAAAERYYQQ 410 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCC-HHHHHHHHHHHHH-CCCHHHHHHHHHH
Confidence 44666677899999999999999876 432 2333445555532 3445555555543
No 86
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=25.73 E-value=2.1e+02 Score=23.51 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 027732 8 REENVYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVA 54 (219)
Q Consensus 8 r~~li~~AklaeqaeRy~dm~~~mk~~i~~~~~~~L~~eERnLlsva 54 (219)
.+-.+.+|...-..|.|++++..++.++...++.+..++=.-++..+
T Consensus 42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 42 PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence 35567888888999999999999999998874344444444444444
No 87
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=25.41 E-value=2e+02 Score=20.35 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 027732 8 REENVYMAKLAEQAERYEEMVEFMEKVAK 36 (219)
Q Consensus 8 r~~li~~AklaeqaeRy~dm~~~mk~~i~ 36 (219)
--+++..|--.+++|+|++++.+-.+-++
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 35677888888999999999988777664
No 88
>COG2250 Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN [Function unknown]
Probab=25.22 E-value=3.3e+02 Score=21.23 Aligned_cols=105 Identities=17% Similarity=0.158 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhc---------CCCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhc
Q 027732 9 EENVYMAKLAEQAERYEEMVEFMEKVAKT---------VDVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESR 79 (219)
Q Consensus 9 ~~li~~AklaeqaeRy~dm~~~mk~~i~~---------~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~ieq~~~~~ 79 (219)
...+-.|+..-..|.|+.++-.-.|.++. ++.++-|+.=+.||....+. +.....-++.+..++..--..
T Consensus 14 ~~~l~~A~~~le~G~y~~a~f~aqQAvel~lKalL~~~~~~~p~tH~l~~Ll~~l~~~-~~~~e~~~~~~~~Le~~yi~s 92 (132)
T COG2250 14 ERDLKLAKRDLELGDYDLACFHAQQAVELALKALLIRLGGEPPKTHSLRELLRELSRE-LEVPEEILECARELEKRYILS 92 (132)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHhHh
Confidence 34456677777889999998886666542 22277888888899888764 333333333333333332111
Q ss_pred CCch--hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027732 80 GNED--HVSVIKEYRSKIENELSKICDGILSLLESHL 114 (219)
Q Consensus 80 ~~~~--~~~~i~~y~~ki~~EL~~~c~eii~lid~~L 114 (219)
.-+. .-.....|-+...+++......|++++...+
T Consensus 93 rY~d~~~~~p~e~~~~~~ae~~l~~A~~v~e~v~~~l 129 (132)
T COG2250 93 RYPDAEYEGPLELYSKEDAEELLKTAEKVLELVEGLL 129 (132)
T ss_pred cCccccccCccchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 0111 1113467888888899999999999988665
No 89
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=24.76 E-value=1e+02 Score=19.02 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=26.0
Q ss_pred cchhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 027732 133 DYHRYLAEFKTGAERKEAAESTLLAYKSAQDIALAELAPT 172 (219)
Q Consensus 133 DyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt 172 (219)
|.|--++|+.-..++ -++|.+=|++|+++-++.+||.
T Consensus 2 dv~~~Lgeisle~e~---f~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 2 DVYDLLGEISLENEN---FEQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred cHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHhcCCC
Confidence 445556777655543 3467888999999988777763
No 90
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=24.72 E-value=6.3e+02 Score=25.55 Aligned_cols=43 Identities=19% Similarity=0.136 Sum_probs=33.8
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 027732 7 SREENVYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVA 54 (219)
Q Consensus 7 ~r~~li~~AklaeqaeRy~dm~~~mk~~i~~~~~~~L~~eERnLlsva 54 (219)
+.+-+..+|.+..+.|+|++++.+..+++..+ + ..+.-++|.|
T Consensus 153 ~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~--p---~~~~~~~~~a 195 (694)
T PRK15179 153 SAREILLEAKSWDEIGQSEQADACFERLSRQH--P---EFENGYVGWA 195 (694)
T ss_pred CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC--C---CcHHHHHHHH
Confidence 46778889999999999999999999998644 2 4455566655
No 91
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=24.42 E-value=1.5e+02 Score=19.96 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=19.1
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc
Q 027732 12 VYMAKLAEQAERYEEMVEFMEKVAKT 37 (219)
Q Consensus 12 i~~AklaeqaeRy~dm~~~mk~~i~~ 37 (219)
+....-.=|.|+|+++.+++++++..
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34444556889999999999999854
No 92
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=24.29 E-value=2.3e+02 Score=24.82 Aligned_cols=51 Identities=14% Similarity=0.041 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHh--cCCCCCcchhhhhhHHHHHHHHHhCChHHHHHHHHHHHH
Q 027732 155 LLAYKSAQDIALA--ELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVRV 206 (219)
Q Consensus 155 ~~aY~~A~~~a~~--~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~lAk~Afd 206 (219)
..-|++|....+. ...|.||.+-...++.+..+++ +|++++|+.+-++...
T Consensus 193 ~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~-~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 193 KGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD-KGDTAKAKAVYQQVIK 245 (263)
T ss_pred cCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 3445556655543 3468899888888888887776 7999999998876654
No 93
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=24.24 E-value=3.3e+02 Score=22.41 Aligned_cols=56 Identities=13% Similarity=0.228 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 027732 9 EENVYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRIIS 70 (219)
Q Consensus 9 ~~li~~AklaeqaeRy~dm~~~mk~~i~~~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~ 70 (219)
+--++-+.+.-+.++|+|++..++.+.+. ..-+.=-+-|++.++...=++ +||..-
T Consensus 45 e~~~~~~~l~i~r~~w~dA~rlLr~l~~~---~~~~p~~kALlA~CL~~~~D~---~Wr~~A 100 (160)
T PF09613_consen 45 ELDLFDGWLHIVRGDWDDALRLLRELEER---APGFPYAKALLALCLYALGDP---SWRRYA 100 (160)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhcc---CCCChHHHHHHHHHHHHcCCh---HHHHHH
Confidence 34567788889999999999999997654 566777889999999765554 899874
No 94
>PRK11189 lipoprotein NlpI; Provisional
Probab=24.22 E-value=1.7e+02 Score=25.53 Aligned_cols=29 Identities=14% Similarity=0.150 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 027732 10 ENVYMAKLAEQAERYEEMVEFMEKVAKTV 38 (219)
Q Consensus 10 ~li~~AklaeqaeRy~dm~~~mk~~i~~~ 38 (219)
-..+++++.++.|++++++.+.++++..+
T Consensus 238 a~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 238 TYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 46788999999999999999999999876
No 95
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=24.20 E-value=1.9e+02 Score=25.21 Aligned_cols=56 Identities=14% Similarity=0.137 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhh-hhhHHHHHHHHHhCChHHHHHHHHHHHHH
Q 027732 151 AESTLLAYKSAQDIALAELAPTHPIRLG-LALNFSVFYYEILNSPDRACNLAKQVRVA 207 (219)
Q Consensus 151 ~~~a~~aY~~A~~~a~~~L~pt~pirLg-L~LN~SVF~yEi~~~~~~A~~lAk~Afd~ 207 (219)
.+.|.-.|.++-.... .++|....+|+ +.+|+++-.+.--++.+.|+..-++|++-
T Consensus 9 ~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 9 LDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred HHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3457778888877665 78888888887 77899999998433999999999999875
No 96
>PHA02942 putative transposase; Provisional
Probab=23.56 E-value=2.9e+02 Score=25.65 Aligned_cols=72 Identities=7% Similarity=-0.019 Sum_probs=48.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhh-hhHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhhhhh
Q 027732 143 TGAERKEAAESTLLAYKSAQDIALAELAPTHPIRLGL-ALNFSVFYYEILNSPDRACNLAKQVRVAALLFLSFFL 216 (219)
Q Consensus 143 ~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL-~LN~SVF~yEi~~~~~~A~~lAk~Afd~Ai~~ld~~~ 216 (219)
..++..+.......+|++|.....+...+.+. ++- .==...+|.++.....-+-++|++|+.+|.+....+.
T Consensus 19 ~~~~~~~~l~~~~~~~~~A~n~i~~~~~~~~~--~~~~~~l~~~~Y~~Lre~~~l~s~~a~~~~r~~~~a~k~~~ 91 (383)
T PHA02942 19 LSDSLLAFVNNYVKALRFSIFWMKENVKNPNE--KGALSKVHEGLYEKLKEDYNLPPKVSADCYRDALAIYKSWY 91 (383)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhccCccc--ccHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 45677788899999999999888766655443 221 1112556666665566677777788777776665544
No 97
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=23.09 E-value=4.2e+02 Score=24.73 Aligned_cols=82 Identities=16% Similarity=0.208 Sum_probs=51.9
Q ss_pred hcchhhhhhhcC---chhH----HHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhHHHHHHHHHhCChHHHHHHHHHH
Q 027732 132 GDYHRYLAEFKT---GAER----KEAAESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQV 204 (219)
Q Consensus 132 gDyyRYlaE~~~---~~~~----~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~lAk~A 204 (219)
++||-|+||-.. +.++ .+.-+.=.+-..++.+-|++++. -+-+| ...+|-+-||-.| ||.+.|.+.-+++
T Consensus 54 ap~Ye~lce~~~i~~D~~~l~~m~~~neeki~eld~~iedaeenlG-E~ev~-ea~~~kaeYycqi-gDkena~~~~~~t 130 (393)
T KOG0687|consen 54 APLYEYLCESLVIKLDQDLLNSMKKANEEKIKELDEKIEDAEENLG-ESEVR-EAMLRKAEYYCQI-GDKENALEALRKT 130 (393)
T ss_pred chHHHHHHhhcceeccHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc-hHHHH-HHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence 578888888432 1111 11122223445666777776654 33343 3457788888775 9999999999999
Q ss_pred HHHHHH---hhhhhh
Q 027732 205 RVAALL---FLSFFL 216 (219)
Q Consensus 205 fd~Ai~---~ld~~~ 216 (219)
++++++ .+|.++
T Consensus 131 ~~ktvs~g~kiDVvf 145 (393)
T KOG0687|consen 131 YEKTVSLGHKIDVVF 145 (393)
T ss_pred HHHHhhcccchhhHH
Confidence 999987 455443
No 98
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=22.70 E-value=3.3e+02 Score=23.38 Aligned_cols=58 Identities=19% Similarity=0.257 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCC-----chhHHHHHHhhhcchhhhhhhcCchhHHHHHHHHHHHHHHHHHHH
Q 027732 95 IENELSKICDGILSLLESHLIPSASS-----AESKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLLAYKSAQDIA 165 (219)
Q Consensus 95 i~~EL~~~c~eii~lid~~Lip~~~~-----~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a 165 (219)
..+.-..--++.+++....|-|.... -.-.|||+.+.|| ..++.+-|.++|++|..-.
T Consensus 141 ~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~-------------~~~A~~ia~~afd~a~~~l 203 (236)
T PF00244_consen 141 AAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILND-------------PEKAIEIAKQAFDEAISEL 203 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS--------------HHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCC-------------hHHHHHHHHHHHHHHHhhh
Confidence 33444444566777888775443311 2456888877766 2367778888888887644
No 99
>PHA02103 hypothetical protein
Probab=22.54 E-value=29 Score=26.86 Aligned_cols=14 Identities=43% Similarity=0.653 Sum_probs=10.8
Q ss_pred hhcchhhhhhhcCc
Q 027732 131 KGDYHRYLAEFKTG 144 (219)
Q Consensus 131 kgDyyRYlaE~~~~ 144 (219)
.-|||||.+|-..+
T Consensus 78 ipdyyryf~ee~e~ 91 (135)
T PHA02103 78 IPDYYRYFGEEAEG 91 (135)
T ss_pred ChHHHHHhcccchh
Confidence 46999999986554
No 100
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=22.39 E-value=3.7e+02 Score=20.79 Aligned_cols=65 Identities=18% Similarity=0.224 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 027732 43 LTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSVIKEYRSKIENELSKICDGIL 107 (219)
Q Consensus 43 L~~eERnLlsvayKn~i~~~R~s~R~l~~ieq~~~~~~~~~~~~~i~~y~~ki~~EL~~~c~eii 107 (219)
+|.+|-|-+---.+.++...+...+.+..+.+.-............+...+.+..++....+++-
T Consensus 3 FTl~EA~~lLP~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 67 (120)
T PF09969_consen 3 FTLEEANALLPLLRPILEEIRELKAELEELEERLQELEDSLEVNGLEAELEELEARLRELIDEIE 67 (120)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 67888887777888888888888888876655432211111223344455566666666665543
No 101
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=22.32 E-value=1.1e+02 Score=24.32 Aligned_cols=37 Identities=16% Similarity=0.398 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCc-------hhHHHHHHhhhc
Q 027732 97 NELSKICDGILSLLESHLIPSASSA-------ESKVFYLKMKGD 133 (219)
Q Consensus 97 ~EL~~~c~eii~lid~~Lip~~~~~-------eskvfy~KmkgD 133 (219)
+=+.++|+||+.+|...+......+ -.|-||+|.-=+
T Consensus 75 ~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~ 118 (131)
T cd05493 75 TSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMES 118 (131)
T ss_pred ehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHH
Confidence 4567899999999988874332222 356788876433
No 102
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=22.31 E-value=1.8e+02 Score=19.56 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 027732 10 ENVYMAKLAEQAERYEEMVEFMEKVAK 36 (219)
Q Consensus 10 ~li~~AklaeqaeRy~dm~~~mk~~i~ 36 (219)
.++..|--+++.|+|++++++=++-++
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 567788888999999999988777664
No 103
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=21.83 E-value=4.6e+02 Score=22.16 Aligned_cols=65 Identities=17% Similarity=0.080 Sum_probs=0.0
Q ss_pred hhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhHHHHHHHHHhCChHHHHHHHHHHH
Q 027732 135 HRYLAEFKTGAERKEAAESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVR 205 (219)
Q Consensus 135 yRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~lAk~Af 205 (219)
||.+-+ .+.-..+..+|.+.|++|++ ....|.+.--...+..=-+-..+. +|+.++|..--...+
T Consensus 128 yR~~~~---~~~E~~fl~~Al~~y~~a~~--~e~~~~~~~~~~~l~YLigeL~rr-lg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 128 YRDLGD---EENEKRFLRKALEFYEEAYE--NEDFPIEGMDEATLLYLIGELNRR-LGNYDEAKRWFSRVI 192 (214)
T ss_pred hhccCC---HHHHHHHHHHHHHHHHHHHH--hCcCCCCCchHHHHHHHHHHHHHH-hCCHHHHHHHHHHHH
No 104
>PF14490 HHH_4: Helix-hairpin-helix containing domain; PDB: 3GPL_A 3E1S_A 3GP8_A.
Probab=21.25 E-value=1.3e+02 Score=21.86 Aligned_cols=48 Identities=23% Similarity=0.349 Sum_probs=29.5
Q ss_pred HHhhhcchhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHh-cCCCCCcchhhhhhHHHHHH
Q 027732 128 LKMKGDYHRYLAEFKTGAERKEAAESTLLAYKSAQDIALA-ELAPTHPIRLGLALNFSVFY 187 (219)
Q Consensus 128 ~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~-~L~pt~pirLgL~LN~SVF~ 187 (219)
.+++.|=|+-+.++..=. |+.|-.+|.+ .+++.||-|+.-++-|.+..
T Consensus 38 ~~l~~nPY~L~~~i~gi~------------F~~aD~iA~~~g~~~~d~~Ri~A~i~~~L~~ 86 (94)
T PF14490_consen 38 EILKENPYRLIEDIDGIG------------FKTADKIALKLGIEPDDPRRIRAAILYVLRE 86 (94)
T ss_dssp HHHHH-STCCCB-SSSSB------------HHHHHHHHHTTT--TT-HHHHHHHHHHHHHH
T ss_pred HHHHHChHHHHHHccCCC------------HHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 456666677666553211 5556667765 79999999999999887765
No 105
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=21.07 E-value=2.8e+02 Score=18.92 Aligned_cols=28 Identities=32% Similarity=0.409 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 027732 9 EENVYMAKLAEQAERYEEMVEFMEKVAK 36 (219)
Q Consensus 9 ~~li~~AklaeqaeRy~dm~~~mk~~i~ 36 (219)
-+++..|--.+++|+|++++.+.++.++
T Consensus 9 ~~li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 9 KELISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3566677777889999999999888775
Done!