BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027733
         (219 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2PK9|B Chain B, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
           Phosphate-responsive Signal Transduction Pathway
 pdb|2PK9|D Chain D, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
           Phosphate-responsive Signal Transduction Pathway
 pdb|2PMI|B Chain B, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
           Phosphate- Responsive Signal Transduction Pathway With
           Bound Atp-Gamma-S
 pdb|2PMI|D Chain D, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
           Phosphate- Responsive Signal Transduction Pathway With
           Bound Atp-Gamma-S
          Length = 293

 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 1/124 (0%)

Query: 57  ISVFHGLTRPTISIHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLL 116
           ++ +H    P ISI +Y  R+ K+++      + +  Y+D      P   +NS   HR L
Sbjct: 64  LTRYHSKIPPNISIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFL 123

Query: 117 ITSVLVSAKFMDDIYYNNAFYAKVGGISTTEMNLLEVDFLFDLGFQLNVTPAAFYTYCSY 176
           +T+  V+ K + D +  NA YAKVGG+   E+N+LE DFL  + +++ +      T CS 
Sbjct: 124 LTATTVATKGLCDSFSTNAHYAKVGGVRCHELNILENDFLKRVNYRI-IPRDHNITLCSI 182

Query: 177 LQRE 180
            Q++
Sbjct: 183 EQKQ 186


>pdb|2QEC|A Chain A, Crystal Structure Of Histone Acetyltransferase Hpa2 And
           Related Acetyltransferase (np_600742.1) From
           Corynebacterium Glutamicum Atcc 13032 At 1.90 A
           Resolution
          Length = 204

 Score = 29.6 bits (65), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 11/34 (32%), Positives = 23/34 (67%)

Query: 22  QEEAAVMPKLITVLSSLLQRVAESNDLSQRFHPQ 55
           +++AA +P+L+++      +VA ++  S RFHP+
Sbjct: 89  KDQAAXLPRLVSIFGIKAAQVAWTDLSSARFHPK 122


>pdb|3HM7|A Chain A, Crystal Structure Of Allantoinase From Bacillus Halodurans
           C-125
 pdb|3HM7|B Chain B, Crystal Structure Of Allantoinase From Bacillus Halodurans
           C-125
 pdb|3HM7|C Chain C, Crystal Structure Of Allantoinase From Bacillus Halodurans
           C-125
 pdb|3HM7|D Chain D, Crystal Structure Of Allantoinase From Bacillus Halodurans
           C-125
 pdb|3HM7|E Chain E, Crystal Structure Of Allantoinase From Bacillus Halodurans
           C-125
 pdb|3HM7|F Chain F, Crystal Structure Of Allantoinase From Bacillus Halodurans
           C-125
          Length = 448

 Score = 29.3 bits (64), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 10/102 (9%)

Query: 11  QLGTNIILEGHQEEAAVMPKLITVLSSLLQRVAESNDL-----SQRFHPQKISVF-HGLT 64
           + GT+     H E      K I  L S+L   AESN++     +     Q+++V  +   
Sbjct: 157 ECGTDDFQFSHDETLLKGMKKIAALGSILAVHAESNEMVNALTTIAIEEQRLTVKDYSEA 216

Query: 65  RPTISIHSYLERIFKYA--NCSP--SCFVVAYVYLDRFAQKQ 102
           RP +S    +ERI ++A   C P   C V +   L R  Q +
Sbjct: 217 RPIVSELEAVERILRFAQLTCCPIHICHVSSRKVLKRIKQAK 258


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.137    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,589,676
Number of Sequences: 62578
Number of extensions: 204020
Number of successful extensions: 418
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 416
Number of HSP's gapped (non-prelim): 3
length of query: 219
length of database: 14,973,337
effective HSP length: 95
effective length of query: 124
effective length of database: 9,028,427
effective search space: 1119524948
effective search space used: 1119524948
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)