Query 027733
Match_columns 219
No_of_seqs 172 out of 887
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 14:21:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027733.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027733hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08613 Cyclin: Cyclin; Inte 100.0 2.4E-35 5.3E-40 240.4 12.7 135 29-163 1-149 (149)
2 KOG1674 Cyclin [General functi 100.0 3.9E-29 8.5E-34 216.2 14.2 160 26-185 30-200 (218)
3 KOG1675 Predicted cyclin [Gene 99.6 8.6E-16 1.9E-20 137.9 6.6 129 65-194 188-317 (343)
4 PF00134 Cyclin_N: Cyclin, N-t 99.4 3.7E-12 8E-17 98.7 9.5 93 69-164 33-127 (127)
5 cd00043 CYCLIN Cyclin box fold 98.9 1.3E-08 2.8E-13 72.2 9.7 84 69-156 4-88 (88)
6 smart00385 CYCLIN domain prese 98.6 3.6E-07 7.8E-12 64.1 9.1 81 72-156 1-82 (83)
7 KOG0656 G1/S-specific cyclin D 98.1 1.9E-05 4E-10 72.8 10.3 107 69-175 80-190 (335)
8 KOG0653 Cyclin B and related k 97.7 0.00018 3.8E-09 67.4 8.7 95 69-167 160-258 (391)
9 TIGR00569 ccl1 cyclin ccl1. Un 97.4 0.0013 2.9E-08 59.9 9.8 93 70-166 59-157 (305)
10 KOG0655 G1/S-specific cyclin E 97.4 0.00058 1.3E-08 63.0 7.2 93 70-164 148-242 (408)
11 COG5333 CCL1 Cdk activating ki 96.9 0.0023 5E-08 58.1 6.4 92 72-166 50-148 (297)
12 KOG4164 Cyclin ik3-1/CABLES [C 96.7 0.0031 6.7E-08 59.4 5.6 109 69-180 384-496 (497)
13 COG5024 Cyclin [Cell division 96.6 0.0053 1.1E-07 58.7 6.9 95 70-168 216-313 (440)
14 KOG1674 Cyclin [General functi 94.2 0.039 8.4E-07 48.1 2.9 99 87-185 3-111 (218)
15 PRK00423 tfb transcription ini 93.8 1.1 2.4E-05 40.7 11.7 103 71-177 126-230 (310)
16 KOG0794 CDK8 kinase-activating 92.6 0.2 4.4E-06 44.4 4.9 94 70-166 44-151 (264)
17 KOG0834 CDK9 kinase-activating 92.1 0.86 1.9E-05 42.1 8.4 111 70-184 42-169 (323)
18 PRK00423 tfb transcription ini 91.1 3.2 7E-05 37.7 11.0 95 64-162 213-307 (310)
19 KOG2496 Cdk activating kinase 90.8 1 2.3E-05 41.4 7.4 81 82-166 73-157 (325)
20 PF00382 TFIIB: Transcription 87.7 6.8 0.00015 27.4 8.4 71 74-148 1-71 (71)
21 PF02984 Cyclin_C: Cyclin, C-t 86.6 0.43 9.3E-06 35.6 1.8 88 69-159 2-89 (118)
22 KOG0835 Cyclin L [General func 86.1 5.8 0.00013 37.0 9.1 103 72-177 28-152 (367)
23 COG1405 SUA7 Transcription ini 69.5 43 0.00093 30.5 9.4 83 64-150 188-270 (285)
24 PHA02054 hypothetical protein 68.7 30 0.00064 26.1 6.7 74 28-102 1-84 (94)
25 COG1405 SUA7 Transcription ini 66.3 1E+02 0.0022 28.1 11.1 107 67-177 97-205 (285)
26 PF11357 Spy1: Cell cycle regu 60.6 81 0.0018 25.7 8.4 96 70-172 15-116 (131)
27 KOG0654 G2/Mitotic-specific cy 58.8 15 0.00032 34.6 4.4 98 69-169 139-238 (359)
28 PF12921 ATP13: Mitochondrial 31.7 1E+02 0.0022 24.3 4.7 53 71-125 52-104 (126)
29 PF03914 CBF: CBF/Mak21 family 24.3 1.4E+02 0.003 24.1 4.4 44 60-103 54-98 (164)
No 1
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This entry includes cyclin PHO80 and other cyclins that partner with the cyclin-dependent kinase (CDK) PHO85. The PHO80/PHO85 cyclin-cdk complex is used for a regulatory process other than cell-cycle control []. This entry also includes other PHO80-like cyclins that are involved in the cell-cycle control. They belong to the P/U family and interact preferentially with CDKA1 [].; GO: 0019901 protein kinase binding, 0000079 regulation of cyclin-dependent protein kinase activity; PDB: 2PK9_D 2PMI_D.
Probab=100.00 E-value=2.4e-35 Score=240.40 Aligned_cols=135 Identities=44% Similarity=0.816 Sum_probs=101.5
Q ss_pred cHHHHHHHHHHHHHHHhccccccc------------CCCCcccccCCCCCChhHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 027733 29 PKLITVLSSLLQRVAESNDLSQRF------------HPQKISVFHGLTRPTISIHSYLERIFKYANCSPSCFVVAYVYLD 96 (219)
Q Consensus 29 p~~l~~ia~lLe~~i~~nd~~~~~------------~~~~~~~F~~~~~P~Isi~~yl~rI~~~~~~s~~~~l~ALiYId 96 (219)
+++++.|+.++++++..|+..... .....+.|++..+|++++.+|+.||.++++|+++|+++|++||+
T Consensus 1 ~~~~~~i~~~l~~~~~~n~~~~~~s~~~~~~~~~~~~~~~~~~F~~~~~p~i~i~~fl~ri~~~~~~s~~~~i~aliYl~ 80 (149)
T PF08613_consen 1 DKLVQSIARQLDRLINNNESTAQSSSSSSSPSSPFQQSPKISQFHSQSVPSISIRDFLSRILKYTQCSPECLILALIYLD 80 (149)
T ss_dssp -HHHHHHHHHHHHHHHHHH--------------T---------T--SS--SS-HHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhccCchhhhhcccccccccccccccccccccCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 368999999999999988776532 11345789999999999999999999999999999999999999
Q ss_pred HHhh--hCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhccCCCHHHHHHHHHHHHHhcCCce
Q 027733 97 RFAQ--KQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKVGGISTTEMNLLEVDFLFDLGFQL 163 (219)
Q Consensus 97 RL~~--~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkVgGis~~ELN~LE~~FL~lLdf~L 163 (219)
|+.. ..+.+.+++.|+||+|++|+|||+||+||.+|+|++||++||++++|||.||++||.+|||+|
T Consensus 81 Rl~~~~~~~~~~~~~~~~~Rl~l~alilA~K~~~D~~~~n~~~a~v~gis~~eln~lE~~fL~~l~~~L 149 (149)
T PF08613_consen 81 RLRQRSRKPNIPLNSSNIHRLFLTALILASKFLDDNTYSNKSWAKVGGISLKELNELEREFLKLLDYNL 149 (149)
T ss_dssp HHHH--H-TT---STTTHHHHHHHHHHHHHHHH-SS---HHHHHHHHTS-HHHHHHHHHHHHHHTTT--
T ss_pred HHHHhhcccccccccchhHHHHHHHHHHHHhhcccccccHHHHHhhcCCCHHHHHHHHHHHHHHCCCcC
Confidence 9999 567889999999999999999999999999999999999999999999999999999999997
No 2
>KOG1674 consensus Cyclin [General function prediction only]
Probab=99.96 E-value=3.9e-29 Score=216.22 Aligned_cols=160 Identities=52% Similarity=0.886 Sum_probs=148.1
Q ss_pred ccccHHHHHHHHHHHHHHHhcccccc----cCCCCcccccCCCCCChhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhh
Q 027733 26 AVMPKLITVLSSLLQRVAESNDLSQR----FHPQKISVFHGLTRPTISIHSYLERIFKYANCSPSCFVVAYVYLDRFAQK 101 (219)
Q Consensus 26 ~~~p~~l~~ia~lLe~~i~~nd~~~~----~~~~~~~~F~~~~~P~Isi~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~ 101 (219)
..+|.++..++.+++++.+.|+.... .....++.|++...|+|++.+|++||.++++|+++|+++|++||||+.+.
T Consensus 30 s~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~p~isi~~yleri~k~~~~s~~~lv~al~Yldr~~~~ 109 (218)
T KOG1674|consen 30 SITPIFLTCLSSLLKRLNDSNENLSRENNKSWASPTTGFDGVSTPNISIRQYLERIFKYSKCSPECLVLALVYLDRFVKQ 109 (218)
T ss_pred cccchHHHHHHHHHHHHHhcChhhhcccccccccccccccCCCCCCcchHHHHHHHHHHhcCCchhhhhhhhhhhhhhhh
Confidence 34799999999999999999985542 12245789999999999999999999999999999999999999999997
Q ss_pred ------CCCCCCCCcc-HHHHHHHHHHHHhhhcccCCcccchhhhccCCCHHHHHHHHHHHHHhcCCceeeCHHHHHHHH
Q 027733 102 ------QPSLPINSFN-VHRLLITSVLVSAKFMDDIYYNNAFYAKVGGISTTEMNLLEVDFLFDLGFQLNVTPAAFYTYC 174 (219)
Q Consensus 102 ------~p~~~i~~~n-~hRL~ltalilAsK~ldD~~~sN~~~AkVgGis~~ELN~LE~~FL~lLdf~L~Vs~eey~~Y~ 174 (219)
.|...+++.| +||++++++++|+||.+|.+|+|++||++||++..|||.||.+||..+||+|.|+.++|..|+
T Consensus 110 ~~~~~~~~~~~i~s~n~vhR~lit~v~vs~kf~~d~~y~n~~~a~vggl~~~eln~lE~~~l~~~~~~l~i~~~~~~~~~ 189 (218)
T KOG1674|consen 110 PQARSVKPQSLINSLNKVHRLLITTVTVSTKFLDDVYYSNAYYAKVGGLTTDELNKLELDLLFLLDFRLIISRSEFNLYE 189 (218)
T ss_pred hcccccCcccccccchhHHHHHHHHHHHHHhhccchhhhHHHHHHhCCCChHhhhhhhHHHHhhCCeEEEechhHHHHHH
Confidence 6888999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 027733 175 SYLQREMFLQS 185 (219)
Q Consensus 175 ~~L~~~~~~~~ 185 (219)
..+++++....
T Consensus 190 ~~~~~~~~~~~ 200 (218)
T KOG1674|consen 190 DLLEREENLNK 200 (218)
T ss_pred HHHHHHHhccc
Confidence 99999888774
No 3
>KOG1675 consensus Predicted cyclin [General function prediction only]
Probab=99.61 E-value=8.6e-16 Score=137.87 Aligned_cols=129 Identities=26% Similarity=0.328 Sum_probs=116.8
Q ss_pred CCChhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhccC-C
Q 027733 65 RPTISIHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKVGG-I 143 (219)
Q Consensus 65 ~P~Isi~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkVgG-i 143 (219)
+|..-+..|+...+.+.+++.+|-++.|+|++|+.... ...+.+.||+|..+.++++|+|.|+|..++|..|+.+.. +
T Consensus 188 ~~~~ri~k~v~~l~~~~qlta~~aiitL~~~erl~~~~-e~~~~p~~w~r~~~g~il~sskv~~dqs~wnvdycqIlKd~ 266 (343)
T KOG1675|consen 188 PGLVRIKKFVRILFSWAQLTAECDIITLVYAERLLWLA-ERDPCPRNWSRAVLGEILLSSKVYDDQSVWNVDYCEILKDQ 266 (343)
T ss_pred cchhheehhhhhHhhhhhhhhccchHHHHhhHhhhhHh-hcCCCcchhhhhhhhhheehhhhhhhhhcccHHHHHHHhhc
Confidence 34445888999999999999999999999999999854 445789999999999999999999999999999999975 9
Q ss_pred CHHHHHHHHHHHHHhcCCceeeCHHHHHHHHHHHHHHHHhcCCCCCCccch
Q 027733 144 STTEMNLLEVDFLFDLGFQLNVTPAAFYTYCSYLQREMFLQSPLQLEEPLN 194 (219)
Q Consensus 144 s~~ELN~LE~~FL~lLdf~L~Vs~eey~~Y~~~L~~~~~~~~~~~~~~~~~ 194 (219)
++.+||.|||+||.+|+||+.|...+|.+|+..|...+-.-..-++.+|+.
T Consensus 267 tveDmNe~ERqfLelLqfNinvp~svYAKyYfdlr~Lae~n~L~f~~ePls 317 (343)
T KOG1675|consen 267 SVDDMNALERQFLELLQFNINVPSSEYAKYYFDLRCLAEANPLLFPCEPLS 317 (343)
T ss_pred cHhhHHHHHHHHHHHHhhccCccHHHHHHHHHHHhhhccccccccccccch
Confidence 999999999999999999999999999999999987777777777888765
No 4
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. Cyclins contain two domains of similar all-alpha fold, of which this entry is associated with the N-terminal domain.; PDB: 2W2H_B 3RGF_B 1KXU_A 1JKW_A 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D ....
Probab=99.37 E-value=3.7e-12 Score=98.68 Aligned_cols=93 Identities=19% Similarity=0.346 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhcc--CCCHH
Q 027733 69 SIHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKVG--GISTT 146 (219)
Q Consensus 69 si~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkVg--Gis~~ 146 (219)
.+.+|+.++....++++.++..|+.|+||+..+.+ +...+++.+.++|+++|+|+.++...+...|..++ .++.+
T Consensus 33 ~~~~~i~~~~~~~~l~~~~~~~A~~~~dr~~~~~~---~~~~~~~li~~~cl~lA~K~~e~~~~~~~~~~~~~~~~~~~~ 109 (127)
T PF00134_consen 33 IIIDWIIELCQRLKLSPETLHLAIYLFDRFLSKRP---VNRSKLQLIALACLFLASKMEEDNPPSISDLIRISDNTFTKK 109 (127)
T ss_dssp HHHHHHHHHHHHTT-BHHHHHHHHHHHHHHHTTS----TTCCGHHHHHHHHHHHHHHHHTSS--HHHHHHHHTTTSSHHH
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhcc---cccchhhhhhhhHHHHhhhhhccccchHHHHHHHHcCCCCHH
Confidence 48899999999999999999999999999998764 77899999999999999999999888899998876 48999
Q ss_pred HHHHHHHHHHHhcCCcee
Q 027733 147 EMNLLEVDFLFDLGFQLN 164 (219)
Q Consensus 147 ELN~LE~~FL~lLdf~L~ 164 (219)
++..||+.+|..|+|+|+
T Consensus 110 ~i~~~E~~iL~~L~f~ln 127 (127)
T PF00134_consen 110 DILEMEREILSALNFDLN 127 (127)
T ss_dssp HHHHHHHHHHHHTTT---
T ss_pred HHHHHHHHHHHHCCCCcC
Confidence 999999999999999984
No 5
>cd00043 CYCLIN Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB is a transcription factor that binds the TATA box. Cyclins, TFIIB and RB contain 2 copies of the domain.
Probab=98.92 E-value=1.3e-08 Score=72.18 Aligned_cols=84 Identities=20% Similarity=0.174 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhccCC-CHHH
Q 027733 69 SIHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKVGGI-STTE 147 (219)
Q Consensus 69 si~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkVgGi-s~~E 147 (219)
+..+|+.++.+..++++.+...|..|++|+....+ +...+++.+..+|+.+|+|+.++ ..+++.+.+++|. +.++
T Consensus 4 ~~~~~l~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~ia~a~l~lA~k~~~~-~~~~~~~~~~~~~~~~~~ 79 (88)
T cd00043 4 TPLDFLRRVAKALGLSPETLTLAVNLLDRFLLDYS---VLGRSPSLVAAAALYLAAKVEEI-PPWLKDLVHVTGYATEEE 79 (88)
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcc---cccCChHHHHHHHHHHHHHHcCC-CCCHHHHhHHhCCCCHHH
Confidence 57899999999999999999999999999998654 34789999999999999999998 8899999999999 9999
Q ss_pred HHHHHHHHH
Q 027733 148 MNLLEVDFL 156 (219)
Q Consensus 148 LN~LE~~FL 156 (219)
+..+|..+|
T Consensus 80 i~~~e~~il 88 (88)
T cd00043 80 ILRMEKLLL 88 (88)
T ss_pred HHHHHHHhC
Confidence 999999874
No 6
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma. A helical domain present in cyclins and TFIIB (twice) and Retinoblastoma (once). A protein recognition domain functioning in cell-cycle and transcription control.
Probab=98.62 E-value=3.6e-07 Score=64.13 Aligned_cols=81 Identities=20% Similarity=0.219 Sum_probs=72.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhccCC-CHHHHHH
Q 027733 72 SYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKVGGI-STTEMNL 150 (219)
Q Consensus 72 ~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkVgGi-s~~ELN~ 150 (219)
+|+.|+.+..++++.+.-.|..|++|.....+ +...+++.+..+|+.+|+|+.+.. .+++.+.++.|+ +.+++..
T Consensus 1 ~~l~~~~~~~~~~~~~~~~a~~~~~~~l~~~~---~~~~~~~~ia~a~l~lA~k~~~~~-~~~~~~~~~~~~~~~~~i~~ 76 (83)
T smart00385 1 DFLRRVCKALNLDPETLNLAVNLLDRFLSDYK---FLKYSPSLIAAAALYLAAKTEEIP-PWTKELVHYTGYFTEEEILR 76 (83)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh---cccCCHHHHHHHHHHHHHHHhcCC-CCchhHhHhhCCCCHHHHHH
Confidence 48999999999999999999999999988532 234899999999999999999876 678889999888 9999999
Q ss_pred HHHHHH
Q 027733 151 LEVDFL 156 (219)
Q Consensus 151 LE~~FL 156 (219)
+|+.+|
T Consensus 77 ~~~~il 82 (83)
T smart00385 77 MEKLLL 82 (83)
T ss_pred HHHHHh
Confidence 999987
No 7
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning]
Probab=98.13 E-value=1.9e-05 Score=72.79 Aligned_cols=107 Identities=20% Similarity=0.232 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhc---cCCCH
Q 027733 69 SIHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKV---GGIST 145 (219)
Q Consensus 69 si~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkV---gGis~ 145 (219)
-..++|.++.++-+|++.|+.+|.=|+||+....+--.-.++...-+-++||-+|+|+=+-....-..+--. .-+..
T Consensus 80 ~A~~WIl~V~~~~~~~~~~~~LA~NYlDRFls~~~l~k~k~W~lQLlAvaCLsLAsKmeE~~vPll~dl~v~~~~~~fea 159 (335)
T KOG0656|consen 80 QALDWILKVCEEYNFEPLVFLLAMNYLDRFLSSQKLPKDKPWMLQLLAVACLSLASKMEETDVPLLADLQVEYTDNVFEA 159 (335)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHhhcccccCCCchHHHHHHHHHHHHHHHhhcCcCCchhhhhhhccccccccH
Confidence 367899999999999999999999999999986542222345577788899999999987653322222221 13789
Q ss_pred HHHHHHHHHHHHhcCCcee-eCHHHHHHHHH
Q 027733 146 TEMNLLEVDFLFDLGFQLN-VTPAAFYTYCS 175 (219)
Q Consensus 146 ~ELN~LE~~FL~lLdf~L~-Vs~eey~~Y~~ 175 (219)
+.|-+||+-.|..|+|++. ||+-.|.+|.-
T Consensus 160 ktI~rmELLVLstL~Wrl~aVTP~sF~~~fl 190 (335)
T KOG0656|consen 160 KTIQRMELLVLSTLKWRLRAVTPFSFIDHFL 190 (335)
T ss_pred HHHHHHHHHHHhhccccccCCCchHHHHHHH
Confidence 9999999999999999998 99998887753
No 8
>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.68 E-value=0.00018 Score=67.42 Aligned_cols=95 Identities=21% Similarity=0.300 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHH-HHhhhcccCC-cccchhhhc--cCCC
Q 027733 69 SIHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVL-VSAKFMDDIY-YNNAFYAKV--GGIS 144 (219)
Q Consensus 69 si~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltali-lAsK~ldD~~-~sN~~~AkV--gGis 144 (219)
-+.+|+-.+..+++++++++-+|.-+|||+....+ +...-..-+=++||. ||+|| ++.. ..-+.+..+ +.++
T Consensus 160 iLvdwlvevh~~F~L~~ETL~LaVnliDRfL~~~~---v~~~~lqLvgvsalf~IA~K~-EE~~~P~v~dlv~isd~~~s 235 (391)
T KOG0653|consen 160 ILVDWLVEVHEKFGLSPETLYLAVNLIDRFLSKVK---VPLKKLQLVGVSALLSIACKY-EEISLPSVEDLVLITDGAYS 235 (391)
T ss_pred HHHHHHHHhhhhcCcCHHHHHHHHHHHHHHHHHhc---ccHHHhhHHhHHHHHHHHHhh-hhccCCccceeEeeeCCccc
Confidence 38899999999999999999999999999999754 444555556678867 99999 5543 334555555 5599
Q ss_pred HHHHHHHHHHHHHhcCCceeeCH
Q 027733 145 TTEMNLLEVDFLFDLGFQLNVTP 167 (219)
Q Consensus 145 ~~ELN~LE~~FL~lLdf~L~Vs~ 167 (219)
.+++-.||+..|..|+|++.+..
T Consensus 236 ~~~il~mE~~il~~L~f~l~~p~ 258 (391)
T KOG0653|consen 236 REEILRMEKYILNVLEFDLSVPT 258 (391)
T ss_pred hHHHHHHHHHHHhccCeeecCCc
Confidence 99999999999999999998754
No 9
>TIGR00569 ccl1 cyclin ccl1. University).
Probab=97.36 E-value=0.0013 Score=59.93 Aligned_cols=93 Identities=15% Similarity=0.193 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHcC--CCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhccC-C---
Q 027733 70 IHSYLERIFKYAN--CSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKVGG-I--- 143 (219)
Q Consensus 70 i~~yl~rI~~~~~--~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkVgG-i--- 143 (219)
...++.++....+ ++..+.-.|.+|++|+..++. +....++-+.+||+.+|+|+=+ .+.+-..+.+..+ -
T Consensus 59 y~~~i~~~~~~lkp~Lpq~viaTAivyf~RFy~~~S---v~~~~p~~Ia~tclfLA~KvEE-~~~si~~fv~~~~~~~~~ 134 (305)
T TIGR00569 59 YEKRLLDFCSAFKPTMPTSVVGTAIMYFKRFYLNNS---VMEYHPKIIMLTCVFLACKVEE-FNVSIDQFVGNLKETPLK 134 (305)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHhHHhccCc---hhhcCHHHHHHHHHHHHHhccc-cCcCHHHHHhhccCCchh
Confidence 4456778888889 999999999999999998653 4467889999999999999644 4445555554332 2
Q ss_pred CHHHHHHHHHHHHHhcCCceeeC
Q 027733 144 STTEMNLLEVDFLFDLGFQLNVT 166 (219)
Q Consensus 144 s~~ELN~LE~~FL~lLdf~L~Vs 166 (219)
...++-.+|..+|..|+|+|.|.
T Consensus 135 ~~~~Il~~E~~lL~~L~F~L~V~ 157 (305)
T TIGR00569 135 ALEQVLEYELLLIQQLNFHLIVH 157 (305)
T ss_pred hHHHHHHHHHHHHHHCCCcEEee
Confidence 35899999999999999999975
No 10
>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning]
Probab=97.35 E-value=0.00058 Score=63.00 Aligned_cols=93 Identities=23% Similarity=0.324 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhc--cCCCHHH
Q 027733 70 IHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKV--GGISTTE 147 (219)
Q Consensus 70 i~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkV--gGis~~E 147 (219)
+.|++-.+..-.++..++|-+|.=|+||+.... ..++..+..-+=++|+.||+|+=+=...+-..||-| |..|-.+
T Consensus 148 LlDWlmEVCEvykLHRETFyLAvDy~DRyl~t~--~~v~kt~lQLIGitsLFIAAK~EEIYpPKl~eFAyvTDgAcs~dd 225 (408)
T KOG0655|consen 148 LLDWLMEVCEVYKLHRETFYLAVDYFDRYLETQ--VEVSKTNLQLIGITSLFIAAKLEEIYPPKLIEFAYVTDGACSEDD 225 (408)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH--HHhhhhhHHHhhHHHHHHHHHHhhccCccccceeeeccCccchHH
Confidence 788999999999999999999999999999875 334556667777899999999877777888889988 5699999
Q ss_pred HHHHHHHHHHhcCCcee
Q 027733 148 MNLLEVDFLFDLGFQLN 164 (219)
Q Consensus 148 LN~LE~~FL~lLdf~L~ 164 (219)
+-.||+-.|+.|+|+|.
T Consensus 226 IltmE~iilkal~W~l~ 242 (408)
T KOG0655|consen 226 ILTMELIILKALKWELS 242 (408)
T ss_pred HHHHHHHHHHHhccccc
Confidence 99999999999999986
No 11
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=96.90 E-value=0.0023 Score=58.14 Aligned_cols=92 Identities=18% Similarity=0.322 Sum_probs=79.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhccc---C----CcccchhhhccCCC
Q 027733 72 SYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDD---I----YYNNAFYAKVGGIS 144 (219)
Q Consensus 72 ~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD---~----~~sN~~~AkVgGis 144 (219)
.++.++..+.+++..++-.|.+|.+|+.-+++ +...+.+-+..|++.+|+|+=|- . +-.+.-|++.---+
T Consensus 50 k~i~~l~~~L~lp~~~laTAi~~f~Rf~Lk~s---v~e~~~~~vv~tcv~LA~K~ed~~~~I~i~~~~~~~~~se~~~~s 126 (297)
T COG5333 50 KLIMDLCTRLNLPQTVLATAILFFSRFYLKNS---VEEISLYSVVTTCVYLACKVEDTPRDISIESFEARDLWSEEPKSS 126 (297)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHhhcc---cccccHHHHHHhheeeeeecccccchhhHHHHHhhcccccccccc
Confidence 67899999999999999999999999988654 67889999999999999998761 1 23345577788889
Q ss_pred HHHHHHHHHHHHHhcCCceeeC
Q 027733 145 TTEMNLLEVDFLFDLGFQLNVT 166 (219)
Q Consensus 145 ~~ELN~LE~~FL~lLdf~L~Vs 166 (219)
.+.+-.+|...|..|+|++.|.
T Consensus 127 r~~Il~~E~~lLEaL~fd~~V~ 148 (297)
T COG5333 127 RERILEYEFELLEALDFDLHVH 148 (297)
T ss_pred HHHHHHHHHHHHHHcccceEec
Confidence 9999999999999999999974
No 12
>KOG4164 consensus Cyclin ik3-1/CABLES [Cell cycle control, cell division, chromosome partitioning]
Probab=96.67 E-value=0.0031 Score=59.40 Aligned_cols=109 Identities=18% Similarity=0.180 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhh----hccCCC
Q 027733 69 SIHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYA----KVGGIS 144 (219)
Q Consensus 69 si~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~A----kVgGis 144 (219)
||..-+.+|-.-|+++..+.-+|.+|+++|.-++ .|+-.|-+-.--+|+++|.|+.|=.--.-+.+- ..+.++
T Consensus 384 SlKREMr~l~~d~~id~~TVa~AyVYFEKliLkg---lisK~NRKlcAGAclLlaaKmnD~Kks~vKslIek~Ee~fR~n 460 (497)
T KOG4164|consen 384 SLKREMRELGEDCGIDVVTVAMAYVYFEKLILKG---LISKQNRKLCAGACLLLAAKMNDLKKSTVKSLIEKLEEQFRLN 460 (497)
T ss_pred HHHHHHHHhhhccCccceeehhHHHHHHHHHHhh---hhhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhccc
Confidence 5788889999999999999999999999999864 366677777777999999999843333333332 347789
Q ss_pred HHHHHHHHHHHHHhcCCceeeCHHHHHHHHHHHHHH
Q 027733 145 TTEMNLLEVDFLFDLGFQLNVTPAAFYTYCSYLQRE 180 (219)
Q Consensus 145 ~~ELN~LE~~FL~lLdf~L~Vs~eey~~Y~~~L~~~ 180 (219)
.+||-..|--.|-.|.|.|+++.+|..--+..|+.+
T Consensus 461 rrdLia~Ef~VlvaLefaL~~~~~eVlPHy~RL~~e 496 (497)
T KOG4164|consen 461 RRDLIAFEFPVLVALEFALHLPEHEVLPHYRRLQQE 496 (497)
T ss_pred HHhhhhhhhhHHHhhhhhccCChhhcchHHHHHhhc
Confidence 999999999999999999999999988666666544
No 13
>COG5024 Cyclin [Cell division and chromosome partitioning]
Probab=96.62 E-value=0.0053 Score=58.67 Aligned_cols=95 Identities=16% Similarity=0.225 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHH-HHHHHHHhhhcccCCcccchhhhc--cCCCHH
Q 027733 70 IHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLL-ITSVLVSAKFMDDIYYNNAFYAKV--GGISTT 146 (219)
Q Consensus 70 i~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~-ltalilAsK~ldD~~~sN~~~AkV--gGis~~ 146 (219)
|-+|+-.+...+++.|+++.+|.-.+||+..+. . .+.+...|+ ++|+.||+||=+=..-.-+.|+-+ |.++.+
T Consensus 216 Lv~wlvevH~~F~llpeTL~lainiiDrfLs~~-~---v~l~k~QLvg~s~LfIa~K~EE~~~p~i~~l~~~t~g~~t~~ 291 (440)
T COG5024 216 LVDWLVEVHGKFGLLPETLFLAINIIDRFLSSR-V---VSLEKYQLVGISALFIASKYEEVNCPSIKDLVYATDGAFTRD 291 (440)
T ss_pred HHHHHHHhcccccccchHHHHHHHHHHHHhccC-c---ccHHHHHHHHHHHHHHHHhHhHhcCHHHHHHHHHHcccccHH
Confidence 889999999999999999999999999999864 3 344555555 689999999866666556666655 779999
Q ss_pred HHHHHHHHHHHhcCCceeeCHH
Q 027733 147 EMNLLEVDFLFDLGFQLNVTPA 168 (219)
Q Consensus 147 ELN~LE~~FL~lLdf~L~Vs~e 168 (219)
++-.+|+..|..++|++-....
T Consensus 292 ~i~~aE~~ml~~l~f~is~P~P 313 (440)
T COG5024 292 DIIRAERYMLEVLDFNISWPSP 313 (440)
T ss_pred HHHHHHHHHhhhcccccCCCCh
Confidence 9999999999999999875443
No 14
>KOG1674 consensus Cyclin [General function prediction only]
Probab=94.17 E-value=0.039 Score=48.05 Aligned_cols=99 Identities=17% Similarity=0.207 Sum_probs=79.3
Q ss_pred HHHHHHHHHH--HHhhhCCCCC-CCCccHHHHHHHHHHHHhhhcccCCc-----ccchhhh-ccC-CCHHHHHHHHHHHH
Q 027733 87 CFVVAYVYLD--RFAQKQPSLP-INSFNVHRLLITSVLVSAKFMDDIYY-----NNAFYAK-VGG-ISTTEMNLLEVDFL 156 (219)
Q Consensus 87 ~~l~ALiYId--RL~~~~p~~~-i~~~n~hRL~ltalilAsK~ldD~~~-----sN~~~Ak-VgG-is~~ELN~LE~~FL 156 (219)
+.+++..|++ |+....+... -...+.++.++++++.+.|...|..- +++.|+. +.| ......|.+|+++|
T Consensus 3 ~~~~~s~~~~~~~~~~~~~~~~~~~~ss~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~p~isi~~yl 82 (218)
T KOG1674|consen 3 TLMTMSVYINPDKLRLNLPDNPTGRNSSITPIFLTCLSSLLKRLNDSNENLSRENNKSWASPTTGFDGVSTPNISIRQYL 82 (218)
T ss_pred hhhHhHhhcCccchhhccCcccccccccccchHHHHHHHHHHHHHhcChhhhcccccccccccccccCCCCCCcchHHHH
Confidence 6677888998 8887655332 22468899999999999999988876 7888984 444 47899999999999
Q ss_pred HhcCCceeeCHHHHHHHHHHHHHHHHhcC
Q 027733 157 FDLGFQLNVTPAAFYTYCSYLQREMFLQS 185 (219)
Q Consensus 157 ~lLdf~L~Vs~eey~~Y~~~L~~~~~~~~ 185 (219)
..+.|...+++++|..=+-.+.+.....+
T Consensus 83 eri~k~~~~s~~~lv~al~Yldr~~~~~~ 111 (218)
T KOG1674|consen 83 ERIFKYSKCSPECLVLALVYLDRFVKQPQ 111 (218)
T ss_pred HHHHHHhcCCchhhhhhhhhhhhhhhhhc
Confidence 99999999999999877777766665544
No 15
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=93.77 E-value=1.1 Score=40.70 Aligned_cols=103 Identities=19% Similarity=0.171 Sum_probs=81.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhccCCCHHHHHH
Q 027733 71 HSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKVGGISTTEMNL 150 (219)
Q Consensus 71 ~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkVgGis~~ELN~ 150 (219)
...|.++....+++..+.=-|..+..++.... + +...+..-+..+|+-+|.|. ++.+.+-+..+.+.+++.+++.+
T Consensus 126 ~~~I~~~~~~L~Lp~~v~e~A~~iyk~~~~~~--~-~rgrs~~~i~AAclYiACR~-~~~prtl~eI~~~~~v~~k~i~~ 201 (310)
T PRK00423 126 LSELDRIASQLGLPRSVREEAAVIYRKAVEKG--L-IRGRSIEGVVAAALYAACRR-CKVPRTLDEIAEVSRVSRKEIGR 201 (310)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--c-ccCCCHHHHHHHHHHHHHHH-cCCCcCHHHHHHHhCCCHHHHHH
Confidence 34577888888999998888888888887742 2 34567788888999999996 77788999999999999999999
Q ss_pred HHHHHHHhcCCceee-CHHHHH-HHHHHH
Q 027733 151 LEVDFLFDLGFQLNV-TPAAFY-TYCSYL 177 (219)
Q Consensus 151 LE~~FL~lLdf~L~V-s~eey~-~Y~~~L 177 (219)
.++.+++.|++++-+ ++++|. +|+..|
T Consensus 202 ~~~~l~k~L~~~~~~~~p~~~i~r~~~~L 230 (310)
T PRK00423 202 CYRFLLRELNLKLPPTDPIDYVPRFASEL 230 (310)
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 999999999988754 455554 444443
No 16
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription]
Probab=92.64 E-value=0.2 Score=44.43 Aligned_cols=94 Identities=14% Similarity=0.177 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccC-Cc-------ccc------
Q 027733 70 IHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDI-YY-------NNA------ 135 (219)
Q Consensus 70 i~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~-~~-------sN~------ 135 (219)
..+++..+.++.++-..++-.|.+|+.|+..+.. +...++.-+..||+-+|+|.=+-- .+ .+.
T Consensus 44 ~~n~I~~lg~~lklRQ~ViATAivY~rRfy~r~S---~k~~~p~lla~TClyLAcKvEE~~i~~~r~l~~~a~~L~~~f~ 120 (264)
T KOG0794|consen 44 MANVIQKLGQHLKLRQRVIATAIVYFRRFYLRKS---LKEIEPRLLAPTCLYLACKVEECPIVHIRLLVNEAKVLKTRFS 120 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhccCHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHhhhcc
Confidence 4677888889999999999999999999998753 456778888899999999985542 11 111
Q ss_pred hhhhccCCCHHHHHHHHHHHHHhcCCceeeC
Q 027733 136 FYAKVGGISTTEMNLLEVDFLFDLGFQLNVT 166 (219)
Q Consensus 136 ~~AkVgGis~~ELN~LE~~FL~lLdf~L~Vs 166 (219)
+|..-.....+.+-.+|-..|..||+-|.|-
T Consensus 121 ~~~e~~~~~~~~I~e~Ef~llE~Ld~~LIVh 151 (264)
T KOG0794|consen 121 YWPEKFPYERKDILEMEFYLLEALDCYLIVH 151 (264)
T ss_pred cchhhcCCCcCcchhhhhhHHhhhceeEEEe
Confidence 3666667888999999999999999999884
No 17
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning]
Probab=92.07 E-value=0.86 Score=42.14 Aligned_cols=111 Identities=17% Similarity=0.202 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcc--------cchhhh--
Q 027733 70 IHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYN--------NAFYAK-- 139 (219)
Q Consensus 70 i~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~s--------N~~~Ak-- 139 (219)
...||..+-.+.+++.-++-.|.+|..|+.-.+. +.....+-+-.+|+.+|.|.=| ..-+ ++++..
T Consensus 42 ~~~fI~elg~~L~~~~~ti~tA~~~~hRFy~~~s---~~~~~~~~vA~sclfLAgKvEe-tp~kl~dIi~~s~~~~~~~~ 117 (323)
T KOG0834|consen 42 GAKFIQELGVRLKMPQKTIATAIVIFHRFYMFHS---FKKFDPYTVAASCLFLAGKVEE-TPRKLEDIIKVSYRYLNPKD 117 (323)
T ss_pred HHHHHHHHHHHcCCCccchhhhhhhhhhhhhhcc---cccCcHHHHHHHHHHHHhhccc-CcccHHHHHHHHHHHcCccc
Confidence 5679999999999999999999999999987542 3444445566788999999733 3221 222221
Q ss_pred -----ccCCCHHHHHHHHHHHHHhcCCceeeCH-HH-HHHHHHHHHHHHHhc
Q 027733 140 -----VGGISTTEMNLLEVDFLFDLGFQLNVTP-AA-FYTYCSYLQREMFLQ 184 (219)
Q Consensus 140 -----VgGis~~ELN~LE~~FL~lLdf~L~Vs~-ee-y~~Y~~~L~~~~~~~ 184 (219)
+.-=..+++-.+|+-.|..|+|++.|.. .. ..+|...+..+....
T Consensus 118 ~~~~~~~~~~~~~Iv~~E~~lL~tl~Fdl~v~hPy~~ll~~~k~l~~~~~~~ 169 (323)
T KOG0834|consen 118 LELEEVYWELKERIVQLELLLLETLGFDLNVEHPYKYLLKYLKKLKADENLK 169 (323)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHccCceeccCchHHHHHHHHHhhhhhhcc
Confidence 1111467889999999999999999875 33 446777776665544
No 18
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=91.07 E-value=3.2 Score=37.73 Aligned_cols=95 Identities=14% Similarity=0.119 Sum_probs=76.2
Q ss_pred CCCChhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhccCC
Q 027733 64 TRPTISIHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKVGGI 143 (219)
Q Consensus 64 ~~P~Isi~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkVgGi 143 (219)
..|.++..+|+.|+....+++..+.-.|...+.+.... ++ ....++.-+..+|+-+|++... ..-+-+..+++.|+
T Consensus 213 ~~~~~~p~~~i~r~~~~L~L~~~v~~~A~~i~~~a~~~--~l-~~Gr~P~sIAAAaIYlA~~~~g-~~~t~keIa~v~~V 288 (310)
T PRK00423 213 KLPPTDPIDYVPRFASELGLSGEVQKKAIEILQKAKEK--GL-TSGKGPTGLAAAAIYIASLLLG-ERRTQREVAEVAGV 288 (310)
T ss_pred CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--Cc-ccCCCHHHHHHHHHHHHHHHhC-CCCCHHHHHHHcCC
Confidence 46677889999999999999999888888777766653 22 4668899999999999999764 44678888999999
Q ss_pred CHHHHHHHHHHHHHhcCCc
Q 027733 144 STTEMNLLEVDFLFDLGFQ 162 (219)
Q Consensus 144 s~~ELN~LE~~FL~lLdf~ 162 (219)
+..++..-=++++..++..
T Consensus 289 s~~tI~~~ykel~~~l~~~ 307 (310)
T PRK00423 289 TEVTVRNRYKELAEKLDIK 307 (310)
T ss_pred CHHHHHHHHHHHHHHhCcc
Confidence 9999987767777666543
No 19
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]
Probab=90.76 E-value=1 Score=41.37 Aligned_cols=81 Identities=19% Similarity=0.283 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhccC----CCHHHHHHHHHHHHH
Q 027733 82 NCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKVGG----ISTTEMNLLEVDFLF 157 (219)
Q Consensus 82 ~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkVgG----is~~ELN~LE~~FL~ 157 (219)
.+++++.-.|+.|+.|+.-.+. +....+.-++.||+-+|.|. ++.+.+-..|++-.. =....+-..|-..|+
T Consensus 73 ~lp~~Vv~TA~~fFkRffL~ns---vme~~pk~I~~tc~flA~Ki-eef~ISieqFvkn~~~~~~k~~e~vLk~E~~llq 148 (325)
T KOG2496|consen 73 NLPTSVVSTAIEFFKRFFLENS---VMEYSPKIIMATCFFLACKI-EEFYISIEQFVKNMNGRKWKTHEIVLKYEFLLLQ 148 (325)
T ss_pred CCchHHHHHHHHHHHHHHHhcc---hhhcChHHHHHHHHHHHhhh-HhheecHHHHHhhccCcccccHHHHHhchHHHHH
Confidence 4788999999999999987543 34567788899999999996 467777777776544 568888999999999
Q ss_pred hcCCceeeC
Q 027733 158 DLGFQLNVT 166 (219)
Q Consensus 158 lLdf~L~Vs 166 (219)
.|+|+|.|-
T Consensus 149 sL~f~L~vh 157 (325)
T KOG2496|consen 149 SLKFSLTVH 157 (325)
T ss_pred hhhhhheec
Confidence 999999864
No 20
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. In eukaryotes, transcription initiation of all protein encoding genes involves the polymerase II system. This sytem is modulated by both general and specific transcription factors. The general factors (which include TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIG and TFIIH) operate through common promoter elements, such as the TATA box. Transcription factor IIB (TFIIB) is of central importance in transcription of class II genes. It associates with TFIID-TFIIA bound to DNA (the DA complex) to form a ternary TFIID-IIA-IBB (DAB) complex, which is recognised by RNA polymerase II [, ]. TFIIB comprises ~315-340 residues and contains an imperfect C-terminal repeat of a 75-residue domain that may contribute to the symmetry of the folded protein. The basal archaeal transcription machinery resembles that of the eukaryotic polymerase II system and includes a homologue of TFIIB []. This entry represents a cyclin-like domain which is found repeated in the C-terminal region of a variety of eukaryotic TFIIB's and their archaeal counterparts. These domains individually form the typical cyclin fold, and in the transcription complex they straddle the C-terminal region of the TATA-binding protein - an interaction essential for the formation of the transcription initiation complex [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2PHG_A 1C9B_Q 1TFB_A 1VOL_A 3K7A_M 1AIS_B 1D3U_B.
Probab=87.73 E-value=6.8 Score=27.44 Aligned_cols=71 Identities=10% Similarity=0.119 Sum_probs=55.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhccCCCHHHH
Q 027733 74 LERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKVGGISTTEM 148 (219)
Q Consensus 74 l~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkVgGis~~EL 148 (219)
+.|+....+++..+.=.|.-+.++..... + ....++.-+..+|+-+|.+.. +...+-+..+.+.|++.+++
T Consensus 1 I~r~~~~L~L~~~v~~~A~~i~~~~~~~~--~-~~Gr~~~~iaAA~iY~acr~~-~~~~t~~eIa~~~~Vs~~tI 71 (71)
T PF00382_consen 1 IPRICSKLGLPEDVRERAKEIYKKAQERG--L-LKGRSPESIAAACIYLACRLN-GVPRTLKEIAEAAGVSEKTI 71 (71)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHHHHTT--T-STTS-HHHHHHHHHHHHHHHT-TSSSSHHHHHHHCTSSHHHH
T ss_pred ChHHHhHcCCCHHHHHHHHHHHHHHHHcC--C-cccCCHHHHHHHHHHHHHHHc-CCCcCHHHHHHHhCCCCCcC
Confidence 57889999999999999988888887752 2 455778899999999999865 66778899999999998875
No 21
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This is the C-terminal domain of cyclins.; GO: 0005634 nucleus; PDB: 3QHR_D 3QHW_B 1W98_B 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D 2IW9_D ....
Probab=86.55 E-value=0.43 Score=35.63 Aligned_cols=88 Identities=13% Similarity=0.066 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhccCCCHHHH
Q 027733 69 SIHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKVGGISTTEM 148 (219)
Q Consensus 69 si~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkVgGis~~EL 148 (219)
+..+|+.++.+..+.+....-+|.+.++--..... +-...+-.+-.+|+.+|.+.++....++..+.+..|++.+++
T Consensus 2 Tp~~Fl~~~~~~~~~~~~~~~~a~~l~el~l~~~~---fl~~~PS~iAaAai~lA~~~~~~~~~~~~~l~~~t~~~~~~l 78 (118)
T PF02984_consen 2 TPYDFLRRFLKISNADQEVRNLARYLLELSLLDYE---FLQYPPSVIAAAAILLARKILGKEPPWPESLEKLTGYDKEDL 78 (118)
T ss_dssp -HHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHSHH---HTTS-HHHHHHHHHHHHHHHHHSSTCSHHHHHHHHTS-HHHH
T ss_pred cHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhcc---ccCCCHHHHHHHHHHHHHHHhCccccCCccchhhcCCCHHHH
Confidence 46789999977777777777777777774333221 223455678889999999998754566666667778877776
Q ss_pred HHHHHHHHHhc
Q 027733 149 NLLEVDFLFDL 159 (219)
Q Consensus 149 N~LE~~FL~lL 159 (219)
...=..+...+
T Consensus 79 ~~c~~~i~~~~ 89 (118)
T PF02984_consen 79 KECIELIQELL 89 (118)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 65544444443
No 22
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=86.14 E-value=5.8 Score=37.03 Aligned_cols=103 Identities=17% Similarity=0.226 Sum_probs=66.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCC----------c-----cc--
Q 027733 72 SYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIY----------Y-----NN-- 134 (219)
Q Consensus 72 ~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~----------~-----sN-- 134 (219)
++|+.-.-..+++..|...++|+++|++-..+- -..+..-+..+|+.+|+|.=+.-. | .+
T Consensus 28 e~Iqea~ILL~L~q~a~atgqVLFqRf~~~ks~---v~~~~e~vv~ACv~LASKiEE~Prr~rdVinVFh~L~~r~~~~~ 104 (367)
T KOG0835|consen 28 ELIQEAGILLNLPQVAMATGQVLFQRFCYSKSF---VRHDFEIVVMACVLLASKIEEEPRRIRDVINVFHYLEQRRESEA 104 (367)
T ss_pred HHHHhhhHhhcCcHHHHHHHHHHHHHHHhcccc---ccccHHHHHHHHHHHHhhhccccccHhHHHHHHHHHHHHHhccC
Confidence 345554455678999999999999999986542 235677799999999999755431 0 00
Q ss_pred ---chhhhccCCCHHHHHHHHHHHHHhcCCceeeC--HHHHHHHHHHH
Q 027733 135 ---AFYAKVGGISTTEMNLLEVDFLFDLGFQLNVT--PAAFYTYCSYL 177 (219)
Q Consensus 135 ---~~~AkVgGis~~ELN~LE~~FL~lLdf~L~Vs--~eey~~Y~~~L 177 (219)
...++..-=-....-..|++.|+.|+|..+|. -..+..|...|
T Consensus 105 ~~~~~~~~~~~~lk~~~ir~e~~ILr~LGF~~Hv~hPhklii~YLqtL 152 (367)
T KOG0835|consen 105 AEHLILARLYINLKMQVIRAERRILRELGFDVHVEHPHKLIIMYLQTL 152 (367)
T ss_pred cchhhhhhHHhhhhhHHHHHHHHHHHHhCCeeeeeccHHHHHHHHHHh
Confidence 00111100023456678999999999999863 33444555444
No 23
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=69.55 E-value=43 Score=30.46 Aligned_cols=83 Identities=12% Similarity=0.113 Sum_probs=66.7
Q ss_pred CCCChhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhccCC
Q 027733 64 TRPTISIHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKVGGI 143 (219)
Q Consensus 64 ~~P~Isi~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkVgGi 143 (219)
..|++...+|+.|+....+++.++--.|.=.+++....+- . ....+--+-.+|+.+|++..+ ..-+.+.-|++.|+
T Consensus 188 ~~~~~~p~~yi~rf~s~L~l~~~v~~~a~ei~~~~~~~g~--~-~Gk~P~glAaaaiy~as~l~~-~~~tq~eva~v~~v 263 (285)
T COG1405 188 KIPPVDPSDYIPRFASKLGLSDEVRRKAIEIVKKAKRAGL--T-AGKSPAGLAAAAIYLASLLLG-ERRTQKEVAKVAGV 263 (285)
T ss_pred CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCc--c-cCCCchhHHHHHHHHHHHHhC-CchHHHHHHHHhCC
Confidence 4555789999999999999999999999888888887642 2 256677888899999999887 55677888899998
Q ss_pred CHHHHHH
Q 027733 144 STTEMNL 150 (219)
Q Consensus 144 s~~ELN~ 150 (219)
+...|..
T Consensus 264 tevTIrn 270 (285)
T COG1405 264 TEVTIRN 270 (285)
T ss_pred eeeHHHH
Confidence 8766654
No 24
>PHA02054 hypothetical protein
Probab=68.70 E-value=30 Score=26.12 Aligned_cols=74 Identities=20% Similarity=0.359 Sum_probs=46.4
Q ss_pred ccHHHHHHHHHHHHHHHhccccccc------CCCCcccccCCCCCCh----hHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 027733 28 MPKLITVLSSLLQRVAESNDLSQRF------HPQKISVFHGLTRPTI----SIHSYLERIFKYANCSPSCFVVAYVYLDR 97 (219)
Q Consensus 28 ~p~~l~~ia~lLe~~i~~nd~~~~~------~~~~~~~F~~~~~P~I----si~~yl~rI~~~~~~s~~~~l~ALiYIdR 97 (219)
||+++..||-++..+--.. ..+.. -.+..-++...-.|++ .+.+++...+.+.+|+.+||.++..=-..
T Consensus 1 m~k~~~~ial~~a~~h~v~-a~pe~Gsydeym~GAmIVY~N~IvpS~dnSv~Flehl~~kw~svkCsd~Cfq~Gy~eAk~ 79 (94)
T PHA02054 1 MPKIIAAVALLVATVHLVS-ANPEVGSYDEFMQGAMIVYTNDIVHSKDNSVQFLEYLDTKWGSVGCSDTCFQLGYQEAKL 79 (94)
T ss_pred CchhHHHHHHHHHHhheee-cCCCCCCHHHHhCccEEEEecccccccccHHHHHHHHHHHHhhcchhHHHHHHhhHHHHH
Confidence 5788888888777654322 11111 0122233444455655 47788888899999999999999655555
Q ss_pred HhhhC
Q 027733 98 FAQKQ 102 (219)
Q Consensus 98 L~~~~ 102 (219)
+...+
T Consensus 80 Fv~~~ 84 (94)
T PHA02054 80 FVAYN 84 (94)
T ss_pred Hhhhc
Confidence 55544
No 25
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=66.32 E-value=1e+02 Score=28.07 Aligned_cols=107 Identities=18% Similarity=0.204 Sum_probs=77.8
Q ss_pred ChhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhccCCCHH
Q 027733 67 TISIHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKVGGISTT 146 (219)
Q Consensus 67 ~Isi~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkVgGis~~ 146 (219)
-+....++.++....+++..+---|.....+.... ++ +...++.-++.+|+-+|.+ ....+.+-...+++.+++.+
T Consensus 97 l~~a~~~l~~~~~~l~LP~~v~e~A~~iyr~a~~~--~l-~rGRsie~v~AA~iY~acR-~~~~prtl~eIa~a~~V~~k 172 (285)
T COG1405 97 LITALEELERIASALGLPESVRETAARIYRKAVDK--GL-LRGRSIESVAAACIYAACR-INGVPRTLDEIAKALGVSKK 172 (285)
T ss_pred HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhc--CC-CcCCcHHHHHHHHHHHHHH-HcCCCccHHHHHHHHCCCHH
Confidence 34577789999999999999888887666666553 22 3345566666666666655 67778888999999999999
Q ss_pred HHHHHHHHHHHhcCCcee-eCHHHHH-HHHHHH
Q 027733 147 EMNLLEVDFLFDLGFQLN-VTPAAFY-TYCSYL 177 (219)
Q Consensus 147 ELN~LE~~FL~lLdf~L~-Vs~eey~-~Y~~~L 177 (219)
++.+..+.....++=.+- +++.+|. +|+..|
T Consensus 173 ei~rtyr~~~~~L~l~~~~~~p~~yi~rf~s~L 205 (285)
T COG1405 173 EIGRTYRLLVRELKLKIPPVDPSDYIPRFASKL 205 (285)
T ss_pred HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHc
Confidence 999999988877765544 6676665 455443
No 26
>PF11357 Spy1: Cell cycle regulatory protein; InterPro: IPR020984 Speedy (Spy1) is a cell cycle regulatory protein which activates CDK2, the major kinase that allows progression through G1/S phase and further replication events. Spy1 expression overcomes a p27-induced cell cycle arrest to allow for DNA synthesis, so cell cycle progression occurs due to an interaction between Spy1 and p27 []. Spy1 is also known as Ringo protein A.
Probab=60.57 E-value=81 Score=25.66 Aligned_cols=96 Identities=11% Similarity=0.140 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHcCCCHH-HHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCC-cccchhhhccCCC---
Q 027733 70 IHSYLERIFKYANCSPS-CFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIY-YNNAFYAKVGGIS--- 144 (219)
Q Consensus 70 i~~yl~rI~~~~~~s~~-~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~-~sN~~~AkVgGis--- 144 (219)
|++||.- =+..++|.- .+-+.++|+.|..- .....+.-. |..|+=+|+-+=+|.. .+..-+.-+.|-.
T Consensus 15 I~~FL~~-D~~~~~sDKYLLAmV~~YF~Ragl-----~~~~Y~ri~-FFlALYLAndmEED~~~~K~~If~f~~G~~w~~ 87 (131)
T PF11357_consen 15 IQKFLAW-DKCLRVSDKYLLAMVIAYFSRAGL-----FSWQYQRIH-FFLALYLANDMEEDDEEPKYEIFPFLYGKNWRS 87 (131)
T ss_pred HHHHHHh-CcchhhhhHHHHHHHHHHHHhccc-----chhhcchHH-HHHHHHHhhHHHhccchHHHHHHHHHHCcchHH
Confidence 5555543 122233333 23344467777632 223333333 4467999999988875 4444444445543
Q ss_pred -HHHHHHHHHHHHHhcCCceeeCHHHHHH
Q 027733 145 -TTEMNLLEVDFLFDLGFQLNVTPAAFYT 172 (219)
Q Consensus 145 -~~ELN~LE~~FL~lLdf~L~Vs~eey~~ 172 (219)
.....++-.+|...++|+..||.++-+.
T Consensus 88 ~~~~F~klr~~~~~~m~~Ra~Vsre~cEE 116 (131)
T PF11357_consen 88 QIPQFHKLRDQFWRRMDWRAWVSREECEE 116 (131)
T ss_pred HhHHHHHHHHHHHHHcCCceeeCHHHHHH
Confidence 5677888999999999999999987653
No 27
>KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning]
Probab=58.81 E-value=15 Score=34.60 Aligned_cols=98 Identities=15% Similarity=0.203 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhc--cCCCHH
Q 027733 69 SIHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKV--GGISTT 146 (219)
Q Consensus 69 si~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkV--gGis~~ 146 (219)
++.+++-.+.+-.....++|-++..|++|+....+ ++..--+++=.+++.||+||-.-..-.-..|..+ .-+.-.
T Consensus 139 ilvdwlvevsee~r~~~e~l~ls~~~~drfl~~~~---~~~~k~ql~g~s~m~I~sk~ee~~~~~~~ef~~itd~ty~~~ 215 (359)
T KOG0654|consen 139 ILVDWLVEVSEEYRLTFETLYLSVNYRDRFLSYKE---VNKQKLQLVGISAMLIASKYEEIKEPRVEEFCYITDNTYTYW 215 (359)
T ss_pred hhhhhhhHHHHHHHhhhhheeecHHHHHHHhccCc---cHHHHHHHhCcccceeeccchhhcchHHHHHHhhhhhhhHHH
Confidence 58889999998899999999999999999988543 4445556666799999999977665433334333 336788
Q ss_pred HHHHHHHHHHHhcCCceeeCHHH
Q 027733 147 EMNLLEVDFLFDLGFQLNVTPAA 169 (219)
Q Consensus 147 ELN~LE~~FL~lLdf~L~Vs~ee 169 (219)
++-.||...|..+.|.+......
T Consensus 216 qv~~~~~~il~~l~~~~~~pt~~ 238 (359)
T KOG0654|consen 216 QVLRMEIDILNALTFELVRPTSK 238 (359)
T ss_pred HHHHHHHHHHHHhHHHHhCchHH
Confidence 99999999999999999876544
No 28
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=31.73 E-value=1e+02 Score=24.33 Aligned_cols=53 Identities=26% Similarity=0.236 Sum_probs=45.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhh
Q 027733 71 HSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAK 125 (219)
Q Consensus 71 ~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK 125 (219)
.+-|..|+.-. +...-+..|+-|+|.+.++.| +.+....|.+||==|.++++|
T Consensus 52 ~~lL~AIv~sf-~~n~~i~~al~~vd~fs~~Y~-I~i~~~~W~~Ll~W~~v~s~~ 104 (126)
T PF12921_consen 52 SRLLIAIVHSF-GYNGDIFSALKLVDFFSRKYP-IPIPKEFWRRLLEWAYVLSSK 104 (126)
T ss_pred HHHHHHHHHHH-HhcccHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhcCC
Confidence 56677777777 445678999999999999998 999999999999998888886
No 29
>PF03914 CBF: CBF/Mak21 family; InterPro: IPR005612 This domain is present in the CAATT-binding protein which is essential for growth and necessary for 60S ribosomal subunit biogenesis. Other proteins containing this domain stimulate transcription from the HSP70 promoter.
Probab=24.26 E-value=1.4e+02 Score=24.14 Aligned_cols=44 Identities=11% Similarity=0.353 Sum_probs=31.8
Q ss_pred ccCCCCCChhHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHhhhCC
Q 027733 60 FHGLTRPTISIHSYLERIFKYANCSP-SCFVVAYVYLDRFAQKQP 103 (219)
Q Consensus 60 F~~~~~P~Isi~~yl~rI~~~~~~s~-~~~l~ALiYIdRL~~~~p 103 (219)
++...+|.--+..|+.|+++.+-..+ ...+..+..+.++.+++|
T Consensus 54 l~~~~~~~~rvaAFiKRLl~~sl~~~~~~~~~~L~~i~~ll~~~p 98 (164)
T PF03914_consen 54 LKSDHLPIQRVAAFIKRLLQLSLHLPPSFALAILALIRKLLKRHP 98 (164)
T ss_pred HcccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCH
Confidence 34555566678999999999877554 555555677888888765
Done!