Query 027733
Match_columns 219
No_of_seqs 172 out of 887
Neff 5.7
Searched_HMMs 29240
Date Tue Mar 26 00:38:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027733.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027733hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pmi_B PHO85 cyclin PHO80, ami 100.0 4.9E-40 1.7E-44 292.9 15.5 152 26-177 30-184 (293)
2 1f5q_B Gamma herpesvirus cycli 98.8 5.1E-08 1.7E-12 84.7 11.7 103 69-174 51-156 (252)
3 1g3n_C V-cyclin; cyclin-depend 98.7 8.9E-08 3E-12 82.5 11.8 101 70-173 54-157 (257)
4 3g33_B CCND3 protein; Ser/Thr 98.7 8.2E-08 2.8E-12 85.3 11.0 100 70-172 74-176 (306)
5 2cch_B Cyclin A2, cyclin-A; co 98.7 1.4E-07 4.7E-12 81.5 11.9 100 70-172 42-144 (260)
6 2w96_A G1/S-specific cyclin-D1 98.7 1.6E-07 5.4E-12 81.6 12.1 100 70-172 60-162 (271)
7 2b9r_A Human cyclin B1; cell c 98.7 2.5E-07 8.6E-12 80.4 12.7 101 69-172 40-143 (269)
8 2f2c_A Cyclin homolog, V-cycli 98.7 1.2E-07 3.9E-12 81.7 10.5 101 70-173 55-158 (254)
9 1w98_B Cyclin E, G1/S-specific 98.7 3.3E-07 1.1E-11 80.4 13.4 103 70-174 53-158 (283)
10 1zp2_A RNA polymerase II holoe 98.3 4.6E-06 1.6E-10 70.7 11.2 100 68-171 29-138 (235)
11 2i53_A Cyclin K; cell cycle, t 98.3 2.8E-06 9.4E-11 72.7 9.3 98 70-171 44-155 (258)
12 2ivx_A Cyclin-T2; transcriptio 98.2 1E-05 3.5E-10 69.3 11.0 98 70-171 34-150 (257)
13 3rgf_B Cyclin-C; protein kinas 98.1 2.4E-05 8.2E-10 68.5 11.4 105 70-177 46-168 (285)
14 1jkw_A Cyclin H; cell cycle, c 98.1 4E-05 1.4E-09 68.4 12.2 104 71-178 61-175 (323)
15 2pk2_A Cyclin-T1, protein TAT; 98.0 8.2E-06 2.8E-10 74.1 6.8 98 70-171 41-157 (358)
16 1c9b_A General transcription f 97.9 0.00014 4.9E-09 60.1 11.7 92 70-165 8-99 (207)
17 1ais_B TFB TFIIB, protein (tra 97.5 0.001 3.5E-08 54.5 10.6 104 70-177 12-119 (200)
18 1ais_B TFB TFIIB, protein (tra 94.8 0.19 6.5E-06 40.8 9.5 92 68-163 106-197 (200)
19 3k7a_M Transcription initiatio 94.5 0.045 1.6E-06 48.9 5.6 104 70-177 129-246 (345)
20 3rgf_B Cyclin-C; protein kinas 93.5 0.16 5.5E-06 44.0 6.9 119 71-199 158-277 (285)
21 1c9b_A General transcription f 93.1 0.56 1.9E-05 38.2 9.3 88 66-157 98-185 (207)
22 4bbr_M Transcription initiatio 81.7 7.2 0.00025 34.7 9.3 90 69-162 128-217 (345)
23 2i53_A Cyclin K; cell cycle, t 79.7 18 0.00061 30.0 10.6 89 69-160 150-250 (258)
24 2ivx_A Cyclin-T2; transcriptio 73.6 37 0.0013 28.0 11.3 89 69-159 145-238 (257)
25 2f2c_A Cyclin homolog, V-cycli 73.1 10 0.00035 31.7 7.3 88 69-159 151-246 (254)
26 3k7a_M Transcription initiatio 71.7 0.8 2.7E-05 40.7 0.0 90 64-157 229-318 (345)
27 2b9r_A Human cyclin B1; cell c 71.2 9.1 0.00031 32.4 6.6 84 69-156 137-220 (269)
28 1zp2_A RNA polymerase II holoe 66.5 10 0.00035 31.2 5.8 84 70-159 134-218 (235)
29 2cch_B Cyclin A2, cyclin-A; co 65.9 20 0.0007 29.9 7.7 87 69-158 138-225 (260)
30 3g33_B CCND3 protein; Ser/Thr 63.7 17 0.00056 31.6 6.8 89 69-160 170-266 (306)
31 2pk2_A Cyclin-T1, protein TAT; 62.6 19 0.00066 32.0 7.2 89 70-160 153-246 (358)
32 1g3n_C V-cyclin; cyclin-depend 60.6 31 0.0011 28.7 7.8 87 69-158 150-245 (257)
33 4bbr_M Transcription initiatio 54.6 2.6 8.9E-05 37.6 0.0 92 64-159 229-320 (345)
34 2w96_A G1/S-specific cyclin-D1 48.3 62 0.0021 27.0 7.7 87 69-158 156-254 (271)
35 2kpj_A SOS-response transcript 21.1 1.5E+02 0.0051 20.0 4.7 56 126-188 17-75 (94)
36 1w98_B Cyclin E, G1/S-specific 20.6 3.7E+02 0.013 22.4 8.9 76 69-155 150-236 (283)
No 1
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=100.00 E-value=4.9e-40 Score=292.93 Aligned_cols=152 Identities=26% Similarity=0.438 Sum_probs=140.0
Q ss_pred ccccHHHHHHHHHHHHHHHhccccccc---CCCCcccccCCCCCChhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhC
Q 027733 26 AVMPKLITVLSSLLQRVAESNDLSQRF---HPQKISVFHGLTRPTISIHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQ 102 (219)
Q Consensus 26 ~~~p~~l~~ia~lLe~~i~~nd~~~~~---~~~~~~~F~~~~~P~Isi~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~ 102 (219)
....+++.+||.+|+++++.||..+.. .+..+++||+.++|+|+|.+|+.||+++++|+++|+++|++||+||..+.
T Consensus 30 ~~~~dlv~~IA~~L~~LI~~Nd~~~~~~~~~~~~~t~F~~~~~P~ISI~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~ 109 (293)
T 2pmi_B 30 CSRTDLVVLISRMLVSLIAINENSATKKSDDQITLTRYHSKIPPNISIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVY 109 (293)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHCC--------CCCCTTCCSSCCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHcCccccccccccccccccccCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhC
Confidence 345579999999999999999988632 33467899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhccCCCHHHHHHHHHHHHHhcCCceeeCHHHHHHHHHHH
Q 027733 103 PSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKVGGISTTEMNLLEVDFLFDLGFQLNVTPAAFYTYCSYL 177 (219)
Q Consensus 103 p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkVgGis~~ELN~LE~~FL~lLdf~L~Vs~eey~~Y~~~L 177 (219)
|++.+++.|+||+|++|+|||+|||||.+|+|++||+|||++++|||.||++||.+|||+|+|++++|..|+..+
T Consensus 110 p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~ELN~LE~eFL~lLdf~L~V~~ee~~~cy~E~ 184 (293)
T 2pmi_B 110 PDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHELNILENDFLKRVNYRIIPRDHNITLCSIEQ 184 (293)
T ss_dssp TTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTTTCCSCCTTHHHHHHHHS
T ss_pred CCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHHHHHHHHHHHHHHcCCceeeCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887544
No 2
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=98.77 E-value=5.1e-08 Score=84.66 Aligned_cols=103 Identities=16% Similarity=0.181 Sum_probs=88.2
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhc--cCCCHH
Q 027733 69 SIHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKV--GGISTT 146 (219)
Q Consensus 69 si~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkV--gGis~~ 146 (219)
.+-+|+..+....+++++++-+|..|+||+..+.+ +......-+-++|+.||+|+-+-...+-+.+..+ +.++.+
T Consensus 51 ~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~---v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~ 127 (252)
T 1f5q_B 51 VLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTR---IDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTAD 127 (252)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSC---CCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCC---cCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHH
Confidence 38899999999999999999999999999999763 5667788888999999999988777676777665 358999
Q ss_pred HHHHHHHHHHHhcCCcee-eCHHHHHHHH
Q 027733 147 EMNLLEVDFLFDLGFQLN-VTPAAFYTYC 174 (219)
Q Consensus 147 ELN~LE~~FL~lLdf~L~-Vs~eey~~Y~ 174 (219)
|+-+||+..|..|+|+|. +++-.|-.++
T Consensus 128 ~i~~mE~~IL~~L~w~l~~pTp~~FL~~~ 156 (252)
T 1f5q_B 128 KLLTLEVKSLDTLSWVADRCLSTDLICYI 156 (252)
T ss_dssp HHHHHHHHHHHHTTTCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCccCCCCHHHHHHHH
Confidence 999999999999999998 5677765443
No 3
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=98.73 E-value=8.9e-08 Score=82.55 Aligned_cols=101 Identities=15% Similarity=0.197 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhcc--CCCHHH
Q 027733 70 IHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKVG--GISTTE 147 (219)
Q Consensus 70 i~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkVg--Gis~~E 147 (219)
+.+|+..+....+++++++-+|..|+||+..+. .+......-+-++|+.||+|+-+-...+-+.+..++ .++.+|
T Consensus 54 lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~---~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~ 130 (257)
T 1g3n_C 54 LGTWMFSVCQEYNLEPNVVALALNLLDRLLLIK---QVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQE 130 (257)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTC---CCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHH
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHHccC---CCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHH
Confidence 789999999999999999999999999999864 356677888889999999999877777778888774 489999
Q ss_pred HHHHHHHHHHhcCCcee-eCHHHHHHH
Q 027733 148 MNLLEVDFLFDLGFQLN-VTPAAFYTY 173 (219)
Q Consensus 148 LN~LE~~FL~lLdf~L~-Vs~eey~~Y 173 (219)
+-+||+..|..|+|+|. +++..|-.+
T Consensus 131 i~~mE~~iL~~L~~~l~~~tp~~fl~~ 157 (257)
T 1g3n_C 131 LIDQEKELLEKLAWRTEAVLATDVTSF 157 (257)
T ss_dssp HHHHHHHHHHHTTTCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCcCCCCCHHHHHHH
Confidence 99999999999999998 566666544
No 4
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=98.70 E-value=8.2e-08 Score=85.33 Aligned_cols=100 Identities=19% Similarity=0.274 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhccC--CCHHH
Q 027733 70 IHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKVGG--ISTTE 147 (219)
Q Consensus 70 i~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkVgG--is~~E 147 (219)
+.+|+.++....+++++++-+|..|+||+..+.+ +.....+-+-++|+.||+|+-+-...+-+.+..+++ ++.++
T Consensus 74 lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~---v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~ 150 (306)
T 3g33_B 74 LAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVP---TRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQ 150 (306)
T ss_dssp HHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCC---CCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHH
T ss_pred HHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHH
Confidence 7889999999999999999999999999999763 567889999999999999998877777777877754 89999
Q ss_pred HHHHHHHHHHhcCCcee-eCHHHHHH
Q 027733 148 MNLLEVDFLFDLGFQLN-VTPAAFYT 172 (219)
Q Consensus 148 LN~LE~~FL~lLdf~L~-Vs~eey~~ 172 (219)
+-+||+..|..|+|+|. +++..|-.
T Consensus 151 i~~mE~~IL~~L~f~l~~~tp~~fl~ 176 (306)
T 3g33_B 151 LRDWEVLVLGKLKWDLAAVIAHDFLA 176 (306)
T ss_dssp HHHHHHHHHHHTTTCCCCCCGGGGHH
T ss_pred HHHHHHHHHHHcCCccCCCCHHHHHH
Confidence 99999999999999997 45555543
No 5
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=98.69 E-value=1.4e-07 Score=81.45 Aligned_cols=100 Identities=18% Similarity=0.176 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhcc--CCCHHH
Q 027733 70 IHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKVG--GISTTE 147 (219)
Q Consensus 70 i~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkVg--Gis~~E 147 (219)
+.+|+..+....+++++++-+|..|+||+..+.+ +......-+-++|+.+|+|+-+-...+-+.+..++ .++.++
T Consensus 42 lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~---v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~ 118 (260)
T 2cch_B 42 LVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMS---VLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQ 118 (260)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCC---CCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHH
Confidence 7799999999999999999999999999999753 56677888889999999999887677778888775 499999
Q ss_pred HHHHHHHHHHhcCCcee-eCHHHHHH
Q 027733 148 MNLLEVDFLFDLGFQLN-VTPAAFYT 172 (219)
Q Consensus 148 LN~LE~~FL~lLdf~L~-Vs~eey~~ 172 (219)
+-+||+..|..|+|++. +++..|-.
T Consensus 119 i~~mE~~iL~~L~~~l~~~tp~~fl~ 144 (260)
T 2cch_B 119 VLRMEHLVLKVLTFDLAAPTVNQFLT 144 (260)
T ss_dssp HHHHHHHHHHHTTTCCCCCCHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCCCHHHHHH
Confidence 99999999999999987 45555543
No 6
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=98.69 E-value=1.6e-07 Score=81.56 Aligned_cols=100 Identities=22% Similarity=0.383 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhcc--CCCHHH
Q 027733 70 IHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKVG--GISTTE 147 (219)
Q Consensus 70 i~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkVg--Gis~~E 147 (219)
+.+|+.++..+.+++++++.+|..|+||+..+.+ +......-+-++|+.+|+|+-+-...+-+.+..++ .++.++
T Consensus 60 lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~---v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~e 136 (271)
T 2w96_A 60 VATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEP---VKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEE 136 (271)
T ss_dssp HHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSC---CCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHH
T ss_pred HHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCC---cCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHH
Confidence 7789999999999999999999999999998753 55678889999999999999887666777777774 489999
Q ss_pred HHHHHHHHHHhcCCcee-eCHHHHHH
Q 027733 148 MNLLEVDFLFDLGFQLN-VTPAAFYT 172 (219)
Q Consensus 148 LN~LE~~FL~lLdf~L~-Vs~eey~~ 172 (219)
+-+||+..|+.|+|++. +++..|-.
T Consensus 137 I~~mE~~IL~~L~~~l~~~tp~~fl~ 162 (271)
T 2w96_A 137 LLQMELLLVNKLKWNLAAMTPHDFIE 162 (271)
T ss_dssp HHHHHHHHHHHTTTCCCCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCccCCCCHHHHHH
Confidence 99999999999999998 56665653
No 7
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=98.67 E-value=2.5e-07 Score=80.39 Aligned_cols=101 Identities=16% Similarity=0.225 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhcc--CCCHH
Q 027733 69 SIHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKVG--GISTT 146 (219)
Q Consensus 69 si~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkVg--Gis~~ 146 (219)
.+.+|+.++....+++++++-+|..|+||+....+ +...+..-+-++|+.+|+|+-+-...+-+.+..++ .++.+
T Consensus 40 ~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~---v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~ 116 (269)
T 2b9r_A 40 ILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNS---VPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKH 116 (269)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSC---CCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC---CcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHH
Confidence 37889999999999999999999999999998753 56788999999999999999877666777888775 48999
Q ss_pred HHHHHHHHHHHhcCCcee-eCHHHHHH
Q 027733 147 EMNLLEVDFLFDLGFQLN-VTPAAFYT 172 (219)
Q Consensus 147 ELN~LE~~FL~lLdf~L~-Vs~eey~~ 172 (219)
|+-+||+..|..|+|++. +++..|-.
T Consensus 117 eI~~mE~~IL~~L~f~l~~~tp~~fl~ 143 (269)
T 2b9r_A 117 QIRQMEMKILRALNFGLGRPLPLHFLR 143 (269)
T ss_dssp HHHHHHHHHHHHTTSCCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCCCHHHHHH
Confidence 999999999999999998 56655543
No 8
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=98.66 E-value=1.2e-07 Score=81.70 Aligned_cols=101 Identities=16% Similarity=0.174 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhcc--CCCHHH
Q 027733 70 IHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKVG--GISTTE 147 (219)
Q Consensus 70 i~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkVg--Gis~~E 147 (219)
+.+|+..+....+++++++-+|..|+||+..+.+ +......-+-+||+.+|+|+-+-...+-+.+..++ .++.+|
T Consensus 55 lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~---v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~ 131 (254)
T 2f2c_A 55 LLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQ---GTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLE 131 (254)
T ss_dssp HHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSC---CCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCC---cCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHH
Confidence 7899999999999999999999999999998643 56678888999999999999887777777888774 489999
Q ss_pred HHHHHHHHHHhcCCcee-eCHHHHHHH
Q 027733 148 MNLLEVDFLFDLGFQLN-VTPAAFYTY 173 (219)
Q Consensus 148 LN~LE~~FL~lLdf~L~-Vs~eey~~Y 173 (219)
+-+||+..|+.|+|++. +++..|-.+
T Consensus 132 i~~mE~~IL~~L~~~l~~~tp~~fl~~ 158 (254)
T 2f2c_A 132 LINQEKDILEALKWDTEAVLATDFLIP 158 (254)
T ss_dssp HHHHHHHHHHHTTTCCCCCCGGGSHHH
T ss_pred HHHHHHHHHHHCCCcCCCCCHHHHHHH
Confidence 99999999999999998 556555543
No 9
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=98.66 E-value=3.3e-07 Score=80.36 Aligned_cols=103 Identities=17% Similarity=0.228 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhcc--CCCHHH
Q 027733 70 IHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKVG--GISTTE 147 (219)
Q Consensus 70 i~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkVg--Gis~~E 147 (219)
+.+|+..+....+++++++-+|..|+||+..... .+......-+-++|+.+|+|+-+-...+-+.+..++ .++.+|
T Consensus 53 lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~--~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~e 130 (283)
T 1w98_B 53 LLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQE--NVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDE 130 (283)
T ss_dssp HHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCC--CCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHH
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHH
Confidence 7789999999999999999999999999998732 246688899999999999999887677778888875 489999
Q ss_pred HHHHHHHHHHhcCCcee-eCHHHHHHHH
Q 027733 148 MNLLEVDFLFDLGFQLN-VTPAAFYTYC 174 (219)
Q Consensus 148 LN~LE~~FL~lLdf~L~-Vs~eey~~Y~ 174 (219)
+.+||+..|+.|+|+|. +++..|-.++
T Consensus 131 i~~mE~~IL~~L~~~l~~~tp~~fL~~f 158 (283)
T 1w98_B 131 ILTMELMIMKALKWRLSPLTIVSWLNVY 158 (283)
T ss_dssp HHHHHHHHHHHTTTCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcCCCCCHHHHHHHH
Confidence 99999999999999998 5666665443
No 10
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=98.31 E-value=4.6e-06 Score=70.73 Aligned_cols=100 Identities=17% Similarity=0.177 Sum_probs=83.4
Q ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCC-ccHHHHHHHHHHHHhhhcccCCcccchhhhcc-----
Q 027733 68 ISIHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINS-FNVHRLLITSVLVSAKFMDDIYYNNAFYAKVG----- 141 (219)
Q Consensus 68 Isi~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~-~n~hRL~ltalilAsK~ldD~~~sN~~~AkVg----- 141 (219)
....++|.++....++++.++-.|..|++|+..+++ +.. .+..-+.++||.+|+|+-+ ...+-+.++.+.
T Consensus 29 ~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~---~~~~~~~~lv~~acL~lA~K~Ee-~~~~l~d~~~~~~~~~~ 104 (235)
T 1zp2_A 29 IYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKN---EEKGFSLEALVATCIYLSCKVEE-CPVHIRTICNEANDLWS 104 (235)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCC---SCCCCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcc---cccccCHHHHHHHHHHHHhcccc-CcccHHHHHHHHHHHcc
Confidence 346789999999999999999999999999998753 455 7888999999999999866 555666666553
Q ss_pred ---CCCHHHHHHHHHHHHHhcCCceee-CHHHHH
Q 027733 142 ---GISTTEMNLLEVDFLFDLGFQLNV-TPAAFY 171 (219)
Q Consensus 142 ---Gis~~ELN~LE~~FL~lLdf~L~V-s~eey~ 171 (219)
.++.+++-.||+.+|+.|+|++.+ ++..|-
T Consensus 105 ~~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l 138 (235)
T 1zp2_A 105 LKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSL 138 (235)
T ss_dssp CSSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHH
T ss_pred chhhccHHHHHHHHHHHHHHCCCcEEecChHHHH
Confidence 579999999999999999999985 455553
No 11
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=98.29 E-value=2.8e-06 Score=72.69 Aligned_cols=98 Identities=16% Similarity=0.172 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhc---------
Q 027733 70 IHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKV--------- 140 (219)
Q Consensus 70 i~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkV--------- 140 (219)
..+++.++....+++++++-.|..|+||+..+.+ +...+.+-+-++|+.+|+|+-+ ...+-+.+..+
T Consensus 44 ~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~---~~~~~~qlv~~acL~lA~K~eE-~~~~l~d~~~~~~~~~~~~~ 119 (258)
T 2i53_A 44 GARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHS---FKQFPRYVTGACCLFLAGKVEE-TPKKCKDIIKTARSLLNDVQ 119 (258)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSC---TTTSCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC---hhhcCHHHHHHHHHHHHHcccc-ccccHHHHHHHHHHHhchhh
Confidence 6689999999999999999999999999998653 5567888888999999999866 45444444432
Q ss_pred ----cCCCHHHHHHHHHHHHHhcCCceee-CHHHHH
Q 027733 141 ----GGISTTEMNLLEVDFLFDLGFQLNV-TPAAFY 171 (219)
Q Consensus 141 ----gGis~~ELN~LE~~FL~lLdf~L~V-s~eey~ 171 (219)
+.-+.+++-.||+.+|+.|+|++.+ ++..|-
T Consensus 120 ~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl 155 (258)
T 2i53_A 120 FGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFL 155 (258)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHH
Confidence 2235789999999999999999985 455554
No 12
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=98.20 E-value=1e-05 Score=69.26 Aligned_cols=98 Identities=23% Similarity=0.317 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhccC-------
Q 027733 70 IHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKVGG------- 142 (219)
Q Consensus 70 i~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkVgG------- 142 (219)
..+|+.++....+++++++-.|..|+||+..+. .+...+.+-+-++|+.+|+|+-+- ..+-+.+.+++.
T Consensus 34 ~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~---~~~~~~~qlv~~acL~lA~K~EE~-p~~l~d~~~~~~~~~~~~~ 109 (257)
T 2ivx_A 34 AANLIQEMGQRLNVSQLTINTAIVYMHRFYMHH---SFTKFNKNIISSTALFLAAKVEEQ-ARKLEHVIKVAHACLHPLE 109 (257)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTS---CTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhC---ChhhhCHHHHHHHHHHHHhccccC-CcCHHHHHHHHHHHhccCC
Confidence 678999999999999999999999999999865 356678899999999999999665 555555554431
Q ss_pred ---------CC--HHHHHHHHHHHHHhcCCceee-CHHHHH
Q 027733 143 ---------IS--TTEMNLLEVDFLFDLGFQLNV-TPAAFY 171 (219)
Q Consensus 143 ---------is--~~ELN~LE~~FL~lLdf~L~V-s~eey~ 171 (219)
+. .+++-.||+.+|..|+|++.+ ++..|-
T Consensus 110 ~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl 150 (257)
T 2ivx_A 110 PLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDV 150 (257)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHH
Confidence 22 899999999999999999984 455554
No 13
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=98.10 E-value=2.4e-05 Score=68.51 Aligned_cols=105 Identities=15% Similarity=0.105 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhc---------
Q 027733 70 IHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKV--------- 140 (219)
Q Consensus 70 i~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkV--------- 140 (219)
..++|.++....++++.++-.|.+|++|+..+.. +...+.+-+.++|+.+|+|+-+-...+.+....+
T Consensus 46 ~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s---~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~ 122 (285)
T 3rgf_B 46 FTNVIQALGEHLKLRQQVIATATVYFKRFYARYS---LKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRF 122 (285)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSC---TTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCC---chhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHcccc
Confidence 6789999999999999999999999999998753 5567889999999999999855433333333221
Q ss_pred -------cCCCHHHHHHHHHHHHHhcCCceee-CHHHHH-HHHHHH
Q 027733 141 -------GGISTTEMNLLEVDFLFDLGFQLNV-TPAAFY-TYCSYL 177 (219)
Q Consensus 141 -------gGis~~ELN~LE~~FL~lLdf~L~V-s~eey~-~Y~~~L 177 (219)
...+.+++-.||+.+|..|+|+|.| ++..|- .|...+
T Consensus 123 ~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l 168 (285)
T 3rgf_B 123 SYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDM 168 (285)
T ss_dssp TTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHH
T ss_pred cccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHh
Confidence 1257899999999999999999975 444443 444433
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=98.06 E-value=4e-05 Score=68.40 Aligned_cols=104 Identities=15% Similarity=0.193 Sum_probs=81.1
Q ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhccCCC----
Q 027733 71 HSYLERIFKYAN--CSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKVGGIS---- 144 (219)
Q Consensus 71 ~~yl~rI~~~~~--~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkVgGis---- 144 (219)
.++|.++....+ ++..++-.|.+|++|+..+++ +...+.+-+.+|||.+|+|+=+- +.+-+.+..+...+
T Consensus 61 ~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s---~~~~~~~lva~acLfLA~K~EE~-~~~l~d~v~~~~~~p~~~ 136 (323)
T 1jkw_A 61 EKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNS---VMEYHPRIIMLTCAFLACKVDEF-NVSSPQFVGNLRESPLGQ 136 (323)
T ss_dssp HHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSC---TTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHGGGSSSCHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCC---hhhcCHHHHHHHHHHHHHhhhcC-CCCHHHHHHHhccChhhh
Confidence 467888999999 999999999999999998753 55678999999999999998554 55556666544323
Q ss_pred ---HHHHHHHHHHHHHhcCCceee-CHHHHH-HHHHHHH
Q 027733 145 ---TTEMNLLEVDFLFDLGFQLNV-TPAAFY-TYCSYLQ 178 (219)
Q Consensus 145 ---~~ELN~LE~~FL~lLdf~L~V-s~eey~-~Y~~~L~ 178 (219)
.+++-.||+.+|..|+|+|.| ++..|- .|...++
T Consensus 137 ~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~ 175 (323)
T 1jkw_A 137 EKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLK 175 (323)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHH
Confidence 689999999999999999985 444443 4544443
No 15
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=98.00 E-value=8.2e-06 Score=74.06 Aligned_cols=98 Identities=22% Similarity=0.297 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhccC-------
Q 027733 70 IHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKVGG------- 142 (219)
Q Consensus 70 i~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkVgG------- 142 (219)
+.+||.++....+++++++-.|..|+||+..+.+ +...+..-+.++||.||+|+-+. ..+-+.+..+..
T Consensus 41 ~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~s---v~~~~~qlva~acLfLA~K~EE~-p~~l~d~v~v~~~~~~~~~ 116 (358)
T 2pk2_A 41 AANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQS---FTRFPGNSVAPAALFLAAKVEEQ-PKKLEHVIKVAHTCLHPQE 116 (358)
T ss_dssp HHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSC---TTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHTTHHHHHCSSS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC---cccccHHHHHHHHHHHHHhhccC-CCCHHHHHHHHHHHhcccc
Confidence 6789999999999999999999999999998653 56688899999999999999665 444444544321
Q ss_pred ---------C--CHHHHHHHHHHHHHhcCCceee-CHHHHH
Q 027733 143 ---------I--STTEMNLLEVDFLFDLGFQLNV-TPAAFY 171 (219)
Q Consensus 143 ---------i--s~~ELN~LE~~FL~lLdf~L~V-s~eey~ 171 (219)
+ ..++|-.||+.+|..|+|+|.+ ++..|-
T Consensus 117 ~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL 157 (358)
T 2pk2_A 117 SLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHV 157 (358)
T ss_dssp CCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHH
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHH
Confidence 1 2788999999999999999984 444443
No 16
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=97.88 E-value=0.00014 Score=60.11 Aligned_cols=92 Identities=8% Similarity=0.012 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhccCCCHHHHH
Q 027733 70 IHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKVGGISTTEMN 149 (219)
Q Consensus 70 i~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkVgGis~~ELN 149 (219)
-.++|.++....+++..+.-.|..|++|+...+. +...+..-+..+|+-+|+|.-+ .+.+-+.++.+.+++.+++.
T Consensus 8 a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~---~~~~~~~~v~aaclylAcK~ee-~p~~l~di~~~~~~~~~~i~ 83 (207)
T 1c9b_A 8 AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKS---LKGRANDAIASACLYIACRQEG-VPRTFKEICAVSRISKKEIG 83 (207)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTC---STTSCHHHHHHHHHHHHHHHTT-CCCCHHHHHHTSSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC---cCCCCHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHCCCHHHHH
Confidence 3568999999999999999999999999998753 4567888999999999999854 57888999999999999999
Q ss_pred HHHHHHHHhcCCceee
Q 027733 150 LLEVDFLFDLGFQLNV 165 (219)
Q Consensus 150 ~LE~~FL~lLdf~L~V 165 (219)
++|+.+|+.|+|++.+
T Consensus 84 ~~~~~ll~~L~~~l~~ 99 (207)
T 1c9b_A 84 RCFKLILKALETSVDL 99 (207)
T ss_dssp HHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHCCCcCc
Confidence 9999999999999864
No 17
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=97.45 E-value=0.001 Score=54.53 Aligned_cols=104 Identities=13% Similarity=0.128 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhccCCCHHHHH
Q 027733 70 IHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKVGGISTTEMN 149 (219)
Q Consensus 70 i~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkVgGis~~ELN 149 (219)
-.+++.++....++++.+.=.|..|++|+.... + +...+..-+..+|+-+|+|..+ .+.+-+..+.+.|++.+++.
T Consensus 12 a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~--~-~~gr~~~~vaaAclylAcr~~~-~p~~l~di~~~~~v~~~~i~ 87 (200)
T 1ais_B 12 ALSELDRITAQLKLPRHVEEEAARLYREAVRKG--L-IRGRSIESVMAACVYAACRLLK-VPRTLDEIADIARVDKKEIG 87 (200)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTT--T-TTTCCHHHHHHHHHHHHHHHHT-CCCCHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--C-cCCCCHHHHHHHHHHHHHHHcC-CCCCHHHHHHHHCCCHHHHH
Confidence 567899999999999999999999999998863 2 3456788889999999999866 78899999999999999999
Q ss_pred HHHHHHHHhcCCceee---CHHHHH-HHHHHH
Q 027733 150 LLEVDFLFDLGFQLNV---TPAAFY-TYCSYL 177 (219)
Q Consensus 150 ~LE~~FL~lLdf~L~V---s~eey~-~Y~~~L 177 (219)
..++.+++.|+|++.+ ++..|- +|+..|
T Consensus 88 ~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L 119 (200)
T 1ais_B 88 RSYRFIARNLNLTPKKLFVKPTDYVNKFADEL 119 (200)
T ss_dssp HHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHH
T ss_pred HHHHHHHHHhcccCCcCCCCHHHHHHHHHHHc
Confidence 9999999999999764 455543 444444
No 18
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=94.77 E-value=0.19 Score=40.75 Aligned_cols=92 Identities=11% Similarity=0.084 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhccCCCHHH
Q 027733 68 ISIHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKVGGISTTE 147 (219)
Q Consensus 68 Isi~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkVgGis~~E 147 (219)
++-.+|+.|+.+..+++..+.-.|..++.+..... . ....++.-+..+|+-+|++..+ ...+.+.++++.|++..+
T Consensus 106 ~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~--~-~~gr~P~~iAaAaly~A~~~~~-~~~t~~ei~~~~~vs~~t 181 (200)
T 1ais_B 106 VKPTDYVNKFADELGLSEKVRRRAIEILDEAYKRG--L-TSGKSPAGLVAAALYIASLLEG-EKRTQREVAEVARVTEVT 181 (200)
T ss_dssp CCGGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTT--C-CTTSCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHTCCHHH
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC--c-ccCCCHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHH
Confidence 56789999999999999998888888887777642 2 4568888999999999999876 445778899999999999
Q ss_pred HHHHHHHHHHhcCCce
Q 027733 148 MNLLEVDFLFDLGFQL 163 (219)
Q Consensus 148 LN~LE~~FL~lLdf~L 163 (219)
+..-=+++...++.++
T Consensus 182 i~~~~~~l~~~l~~~~ 197 (200)
T 1ais_B 182 VRNRYKELVEKLKIKV 197 (200)
T ss_dssp HHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHcCCCC
Confidence 9988888887776443
No 19
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=94.53 E-value=0.045 Score=48.94 Aligned_cols=104 Identities=10% Similarity=0.068 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhccCCCHHHHH
Q 027733 70 IHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKVGGISTTEMN 149 (219)
Q Consensus 70 i~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkVgGis~~ELN 149 (219)
...+|.++....+++..+.=.|..|..|+..... +...+..-+..+|+-+|.| .+..+.+-+.++.+.+++.+||.
T Consensus 129 a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~---~kgr~~~~vaaAclyiAcR-~e~~prtl~ei~~~~~v~~keIg 204 (345)
T 3k7a_M 129 AFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKT---LKGKSMESIMAASILIGCR-RAEVARTFKEIQSLIHVKTKEFG 204 (345)
T ss_dssp HHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCS---SCCCCSHHHHTTTTTTTSB-TTBSSCCHHHHHHSSSCCSHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc---ccCCcHHHHHHHHHHHHHH-HcCCCccHHHHHHHHCCCHHHHH
Confidence 5678899999999999999999999999877531 3455677888899999999 46678888999999999999999
Q ss_pred HHHHHHHHhcC------------Ccee-eCHHHHH-HHHHHH
Q 027733 150 LLEVDFLFDLG------------FQLN-VTPAAFY-TYCSYL 177 (219)
Q Consensus 150 ~LE~~FL~lLd------------f~L~-Vs~eey~-~Y~~~L 177 (219)
+.++.+++.|+ +++. +++..|. +|+..|
T Consensus 205 r~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L 246 (345)
T 3k7a_M 205 KTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHL 246 (345)
T ss_dssp HHHHHHHHHHTCC-----------------------------
T ss_pred HHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHc
Confidence 99999999998 6654 3444443 455544
No 20
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=93.49 E-value=0.16 Score=43.97 Aligned_cols=119 Identities=8% Similarity=-0.068 Sum_probs=80.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhccCCCHHHHHH
Q 027733 71 HSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKVGGISTTEMNL 150 (219)
Q Consensus 71 ~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkVgGis~~ELN~ 150 (219)
.+|+.++++..+.+....-.|..++...... + . .-...++-+-.+|+.+|.+.++.. ...|....|++.+++..
T Consensus 158 ~~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t-~-~-~l~~~Ps~IAaAaiylA~~~~~~~---~~~W~~~~~~~~~~l~~ 231 (285)
T 3rgf_B 158 YRPLLQYVQDMGQEDMLLPLAWRIVNDTYRT-D-L-CLLYPPFMIALACLHVACVVQQKD---ARQWFAELSVDMEKILE 231 (285)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-S-H-HHHSCHHHHHHHHHHHHHHHTTCC---CHHHHHTSCSCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHcc-C-h-hhccCHHHHHHHHHHHHHHHcCCC---hhhHHHHHCCCHHHHHH
Confidence 7899999999998888888887777765432 1 1 123677889999999999988643 26788899999999999
Q ss_pred HHHHHHHhc-CCceeeCHHHHHHHHHHHHHHHHhcCCCCCCccchhhccc
Q 027733 151 LEVDFLFDL-GFQLNVTPAAFYTYCSYLQREMFLQSPLQLEEPLNVGRQL 199 (219)
Q Consensus 151 LE~~FL~lL-df~L~Vs~eey~~Y~~~L~~~~~~~~~~~~~~~~~~~~~~ 199 (219)
.-.+++.+. .|+-+-..+++.. +.+.|...+++|+.+++.|.|+.
T Consensus 232 ~~~~il~ly~~~~~~~~~~~~~~----~~~k~~~~~~~~~~~~~~~~~~~ 277 (285)
T 3rgf_B 232 IIRVILKLYEQWKNFDERKEMAT----ILSKMPKPKPPPNSEGEQGPNGS 277 (285)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHH----HHHHSCCCCCCC-----------
T ss_pred HHHHHHHHHHhcccCchhhhHHH----HHHhCCCCCCCCCCCCCCCCCcc
Confidence 999999886 3555544444432 44666666766666665555543
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=93.07 E-value=0.56 Score=38.17 Aligned_cols=88 Identities=6% Similarity=0.016 Sum_probs=67.9
Q ss_pred CChhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhccCCCH
Q 027733 66 PTISIHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKVGGIST 145 (219)
Q Consensus 66 P~Isi~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkVgGis~ 145 (219)
|...-.+|+.|+.+..+++..+.-.|...+.+.... .+ .....++-+-.+|+-+|++..+ ...+.+.|+++.|++.
T Consensus 98 ~~~~p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~--~l-~~g~~P~~IAaAaiylA~~~~~-~~~~~~~i~~~~~v~~ 173 (207)
T 1c9b_A 98 DLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVEL--DL-VPGRSPISVAAAAIYMASQASA-EKRTQKEIGDIAGVAD 173 (207)
T ss_dssp CCCCTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT--TC-STTCCHHHHHHHHHHHHHHTSS-SCCCHHHHHHHHTCCH
T ss_pred CcCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc--Cc-cCCCChHHHHHHHHHHHHHHHC-CCCCHHHHHHHhCCCH
Confidence 334568999999999999998888887777776653 22 4468899999999999999875 5567788999999998
Q ss_pred HHHHHHHHHHHH
Q 027733 146 TEMNLLEVDFLF 157 (219)
Q Consensus 146 ~ELN~LE~~FL~ 157 (219)
.++..-=++++.
T Consensus 174 ~tI~~~~~~l~~ 185 (207)
T 1c9b_A 174 VTIRQSYRLIYP 185 (207)
T ss_dssp HHHHHHHHHHGG
T ss_pred HHHHHHHHHHHH
Confidence 888765444433
No 22
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=81.75 E-value=7.2 Score=34.68 Aligned_cols=90 Identities=8% Similarity=-0.028 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhccCCCHHHH
Q 027733 69 SIHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKVGGISTTEM 148 (219)
Q Consensus 69 si~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkVgGis~~EL 148 (219)
.....|.++....+++..+.=.|..+..|..... + +...+..-+..+|+-+|.|. ...+.+-+..+.+.+++.+||
T Consensus 128 ~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~--~-~rGrs~e~vaAAclYiACR~-~~~prtl~eI~~~~~v~~kei 203 (345)
T 4bbr_M 128 AAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEK--T-LKGKSMESIMAASILIGCRR-AEVARTFKEIQSLIHVKTKEF 203 (345)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT--T-TTTCCHHHHHHHHHHHHHHH-TCCBCCHHHHHHHHTCCTTHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--C-ccCCCHHHHHHHHHHHHHHh-cCCCccHHHHHHHhCCCHHHH
Confidence 4677899999999999999999988888887742 2 34567888889999999995 567888899999999999999
Q ss_pred HHHHHHHHHhcCCc
Q 027733 149 NLLEVDFLFDLGFQ 162 (219)
Q Consensus 149 N~LE~~FL~lLdf~ 162 (219)
.+..+.+.+.|+..
T Consensus 204 gr~~k~l~~~L~l~ 217 (345)
T 4bbr_M 204 GKTLNIMKNILRGK 217 (345)
T ss_dssp HHHHHHHHHCC---
T ss_pred HHHHHHHHHHhCcc
Confidence 99999999999864
No 23
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=79.65 E-value=18 Score=29.96 Aligned_cols=89 Identities=4% Similarity=-0.026 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHcCCCH----HHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccC-C-----cccchhh
Q 027733 69 SIHSYLERIFKYANCSP----SCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDI-Y-----YNNAFYA 138 (219)
Q Consensus 69 si~~yl~rI~~~~~~s~----~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~-~-----~sN~~~A 138 (219)
+-.+|+.++.+..+.+. ...-.|..+++..... + ..-...+.-+-++|+.+|.+.++-. . .....|-
T Consensus 150 ~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~-~--~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~ 226 (258)
T 2i53_A 150 HPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCT-T--LSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWW 226 (258)
T ss_dssp CHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTT-T--GGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGG
T ss_pred ChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcC-C--chhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHH
Confidence 35789999999999887 4566676666665442 2 2234678899999999999987632 2 1234565
Q ss_pred hc--cCCCHHHHHHHHHHHHHhcC
Q 027733 139 KV--GGISTTEMNLLEVDFLFDLG 160 (219)
Q Consensus 139 kV--gGis~~ELN~LE~~FL~lLd 160 (219)
.. .|++..++...-.+++.+.+
T Consensus 227 ~~~~~~~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 227 EQFVQDVPVDVLEDICHQILDLYS 250 (258)
T ss_dssp GGTSSSCCHHHHHHHHHHHHTTTS
T ss_pred HHhccCCCHHHHHHHHHHHHHHHh
Confidence 54 59999999999988887764
No 24
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=73.59 E-value=37 Score=28.02 Aligned_cols=89 Identities=9% Similarity=0.077 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccC-Cc--ccchhhhc--cCC
Q 027733 69 SIHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDI-YY--NNAFYAKV--GGI 143 (219)
Q Consensus 69 si~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~-~~--sN~~~AkV--gGi 143 (219)
+-.+|+.++.+..+.+....-.|..++.......+ . .-...+.-+-++|+.+|.+.++-. +- ....|... .|+
T Consensus 145 ~P~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~-~-~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~ 222 (257)
T 2ivx_A 145 HPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTT-F-CLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTV 222 (257)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCC-G-GGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSC
T ss_pred CcHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccc-H-HHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCC
Confidence 45889999999999998887778777755442222 1 123677889999999999997632 11 23567764 479
Q ss_pred CHHHHHHHHHHHHHhc
Q 027733 144 STTEMNLLEVDFLFDL 159 (219)
Q Consensus 144 s~~ELN~LE~~FL~lL 159 (219)
+..+|...-.+++...
T Consensus 223 ~~~~l~~~~~~i~~~~ 238 (257)
T 2ivx_A 223 TLELLDELTHEFLQIL 238 (257)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999998765
No 25
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=73.07 E-value=10 Score=31.67 Aligned_cols=88 Identities=8% Similarity=-0.024 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHcCCCHHHH----HHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcc----cchhhhc
Q 027733 69 SIHSYLERIFKYANCSPSCF----VVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYN----NAFYAKV 140 (219)
Q Consensus 69 si~~yl~rI~~~~~~s~~~~----l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~s----N~~~AkV 140 (219)
+-.+|+.++.+..+.+.... -.|..+++. ... ....-...+.-+-.+|+.+|.+...+..++ ....+++
T Consensus 151 tp~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~-~l~--d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~ 227 (254)
T 2f2c_A 151 LATDFLIPLCNALKIPEDLWPQLYEAASTTICK-ALI--QPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSI 227 (254)
T ss_dssp CGGGSHHHHHHHTTCCGGGHHHHHHHHHHHHHH-HTT--SGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHH-HHc--CcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH
Confidence 45789999999888877642 234444442 222 222334677788889999999986444433 4455667
Q ss_pred cCCCHHHHHHHHHHHHHhc
Q 027733 141 GGISTTEMNLLEVDFLFDL 159 (219)
Q Consensus 141 gGis~~ELN~LE~~FL~lL 159 (219)
.|++..++..-=..+..++
T Consensus 228 tg~~~~~l~~c~~~i~~~~ 246 (254)
T 2f2c_A 228 LNFSTNTVRTVKDQVSEAF 246 (254)
T ss_dssp HTCCHHHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHHH
Confidence 8898888877666665554
No 26
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=71.69 E-value=0.8 Score=40.75 Aligned_cols=90 Identities=7% Similarity=-0.054 Sum_probs=0.0
Q ss_pred CCCChhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhccCC
Q 027733 64 TRPTISIHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKVGGI 143 (219)
Q Consensus 64 ~~P~Isi~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkVgGi 143 (219)
..|.+...+|+.|+.+..+++..+.-.|.-++.+..... + .....+.-+-.+|+.+|++.++. ..+.+.|+++.|+
T Consensus 229 ~~~~~~p~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~--l-~~Gr~P~~IAaAaIylAa~~~~~-~~t~~eIa~~~~V 304 (345)
T 3k7a_M 229 NMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIK--E-IAGKSPITIAVVSIYLNILLFQI-PITAAKVGQTLQV 304 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc--h-hcCCCHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHCC
Confidence 445566789999999999999888888888877776532 2 34567778888999999998763 4468899999999
Q ss_pred CHHHHHHHHHHHHH
Q 027733 144 STTEMNLLEVDFLF 157 (219)
Q Consensus 144 s~~ELN~LE~~FL~ 157 (219)
+...|..-=.+++.
T Consensus 305 se~TIr~~ykel~~ 318 (345)
T 3k7a_M 305 TEGTIKSGYKILYE 318 (345)
T ss_dssp --------------
T ss_pred CHHHHHHHHHHHHH
Confidence 88877654344443
No 27
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=71.17 E-value=9.1 Score=32.37 Aligned_cols=84 Identities=8% Similarity=0.014 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhccCCCHHHH
Q 027733 69 SIHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKVGGISTTEM 148 (219)
Q Consensus 69 si~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkVgGis~~EL 148 (219)
+-.+|+.|+.+..+.+....-+|..+++.-... .. .-...+.-+-.+|+.+|.+.++.. -+++..+.++|++..++
T Consensus 137 tp~~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~-~~--~~~~~Ps~iAaAai~lA~~~l~~~-~w~~~l~~~tg~~~~~l 212 (269)
T 2b9r_A 137 LPLHFLRRASKIGEVDVEQHTLAKYLMELTMLD-YD--MVHFPPSQIAAGAFSLALKILDNG-EWTPTLQHYLSYTEESL 212 (269)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHHGGGC-GG--GSSSCTTHHHHHHHHHHHHHHTCC-CSCTTHHHHSCCCSSTT
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-hh--hhcCCHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHCCCHHHH
Confidence 467999999999999988877777666655432 22 234566688889999999998765 34455566788877666
Q ss_pred HHHHHHHH
Q 027733 149 NLLEVDFL 156 (219)
Q Consensus 149 N~LE~~FL 156 (219)
...=..++
T Consensus 213 ~~~~~~l~ 220 (269)
T 2b9r_A 213 LPVMQHLA 220 (269)
T ss_dssp TTHHHHHH
T ss_pred HHHHHHHH
Confidence 54443333
No 28
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=66.55 E-value=10 Score=31.25 Aligned_cols=84 Identities=11% Similarity=0.003 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCC-cccchhhhccCCCHHHH
Q 027733 70 IHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIY-YNNAFYAKVGGISTTEM 148 (219)
Q Consensus 70 i~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~-~sN~~~AkVgGis~~EL 148 (219)
-.+|+.|+.+..+.+....-.|..++....... ..-...+.-+-.+|+.+|.+..+... -....| .|++..++
T Consensus 134 P~~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~---~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~---~~~~~~~i 207 (235)
T 1zp2_A 134 PYTSLEQAFHDGIINQKQLEFAWSIVNDSYASS---LCLMAHPHQLAYAALLISCCNDENTIPKLLDLI---KSTDAFKV 207 (235)
T ss_dssp THHHHHHHHHTTSSCHHHHHHHHHHHHHHTTTT---GGGTSCHHHHHHHHHHHHHTSCTTHHHHHHHHC---CHHHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC---chhccCHHHHHHHHHHHHHHhcCCCCCCCcchh---hcCCHHHH
Confidence 478999999989999998888888887765432 12346788999999999999865321 111222 27777777
Q ss_pred HHHHHHHHHhc
Q 027733 149 NLLEVDFLFDL 159 (219)
Q Consensus 149 N~LE~~FL~lL 159 (219)
...=.+++.+.
T Consensus 208 ~~~~~~i~~ly 218 (235)
T 1zp2_A 208 ILCVQRIISIY 218 (235)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776654
No 29
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=65.94 E-value=20 Score=29.89 Aligned_cols=87 Identities=7% Similarity=0.005 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhccCCCHHH
Q 027733 69 SIHSYLERIFKYANCSP-SCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKVGGISTTE 147 (219)
Q Consensus 69 si~~yl~rI~~~~~~s~-~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkVgGis~~E 147 (219)
+-.+|+.++.+..+.+. ...-+|..+++.-.. ... ......+.-+-.+|+.+|.+.++. ..+++..+.++|++..+
T Consensus 138 tp~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~-~~~-~~~~~~Ps~iAaAai~lA~~~~~~-~~w~~~l~~~~g~~~~~ 214 (260)
T 2cch_B 138 TVNQFLTQYFLHQQPANCKVESLAMFLGELSLI-DAD-PYLKYLPSVIAGAAFHLALYTVTG-QSWPESLIRKTGYTLES 214 (260)
T ss_dssp CHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-CHH-HHTTSCHHHHHHHHHHHHHHHHHS-CCSCHHHHHHHCCCHHH
T ss_pred CHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH-hHH-HHhCCCHHHHHHHHHHHHHHHhCC-CcchHHHHHHhCcCHHH
Confidence 57999999999999775 566666655554221 111 012356678888999999998876 33344455677888887
Q ss_pred HHHHHHHHHHh
Q 027733 148 MNLLEVDFLFD 158 (219)
Q Consensus 148 LN~LE~~FL~l 158 (219)
+...=..+...
T Consensus 215 i~~~~~~l~~~ 225 (260)
T 2cch_B 215 LKPCLMDLHQT 225 (260)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77655555544
No 30
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=63.73 E-value=17 Score=31.56 Aligned_cols=89 Identities=10% Similarity=0.064 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHcCCCHHHH----HHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchh----hhc
Q 027733 69 SIHSYLERIFKYANCSPSCF----VVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFY----AKV 140 (219)
Q Consensus 69 si~~yl~rI~~~~~~s~~~~----l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~----AkV 140 (219)
+..+|+.++++..+.+.... -.|..+++ +.-.... .-...+.-+-.+|+.+|.+.++....+...| +++
T Consensus 170 tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~-lsl~d~~--~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~ 246 (306)
T 3g33_B 170 IAHDFLAFILHRLSLPRDRQALVKKHAQTFLA-LCATDYT--FAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGI 246 (306)
T ss_dssp CGGGGHHHHHHTSSCCTTTHHHHHHHHHHHHH-HHHHCGG--GTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH-HHHhhhh--hccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHH
Confidence 45788988888887764422 23444444 3222222 2346677888899999999999776665555 456
Q ss_pred cCCCHHHHHHHHHHHHHhcC
Q 027733 141 GGISTTEMNLLEVDFLFDLG 160 (219)
Q Consensus 141 gGis~~ELN~LE~~FL~lLd 160 (219)
.|++..+|...-..++.++.
T Consensus 247 tg~~~~~l~~c~~~I~~l~~ 266 (306)
T 3g33_B 247 TGTEVDCLRACQEQIEAALR 266 (306)
T ss_dssp HTCCHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHH
Confidence 78888888776655555443
No 31
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=62.63 E-value=19 Score=31.98 Aligned_cols=89 Identities=9% Similarity=0.065 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccC-Cc--ccchhhhcc--CCC
Q 027733 70 IHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDI-YY--NNAFYAKVG--GIS 144 (219)
Q Consensus 70 i~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~-~~--sN~~~AkVg--Gis 144 (219)
-.+||.++++..+.+....-.|..++....... .+ .-...+.-+-++|+.+|.++++-. .. ....|..+. +++
T Consensus 153 P~~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t-~l-~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt 230 (358)
T 2pk2_A 153 PHTHVVKCTQLVRASKDLAQTSYFMATNSLHLT-TF-SLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVT 230 (358)
T ss_dssp TTHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTS-CG-GGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-cc-hhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCC
Confidence 467999999999998888777877766544211 21 123677788889999999998632 21 235677663 789
Q ss_pred HHHHHHHHHHHHHhcC
Q 027733 145 TTEMNLLEVDFLFDLG 160 (219)
Q Consensus 145 ~~ELN~LE~~FL~lLd 160 (219)
..+|...-.+++.+++
T Consensus 231 ~~~l~~i~~~il~~y~ 246 (358)
T 2pk2_A 231 LELLDELTHEFLQILE 246 (358)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998764
No 32
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=60.59 E-value=31 Score=28.66 Aligned_cols=87 Identities=5% Similarity=-0.161 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHcCCCHHH----HHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccC-----Ccccchhhh
Q 027733 69 SIHSYLERIFKYANCSPSC----FVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDI-----YYNNAFYAK 139 (219)
Q Consensus 69 si~~yl~rI~~~~~~s~~~----~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~-----~~sN~~~Ak 139 (219)
+-.+|+.++.+..+.+... .-.|..+++.-.. ....-...+.-+-.+|+.+|.+.++-. ..+.+..++
T Consensus 150 tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~---d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~ 226 (257)
T 1g3n_C 150 LATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALV---DPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLAS 226 (257)
T ss_dssp CHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHT---STTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHH
T ss_pred CHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHh---CcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHH
Confidence 5789999999998887653 2234444543222 222345677788889999999988621 122333344
Q ss_pred ccCCCHHHHHHHHHHHHHh
Q 027733 140 VGGISTTEMNLLEVDFLFD 158 (219)
Q Consensus 140 VgGis~~ELN~LE~~FL~l 158 (219)
+.|++..++...=..+..+
T Consensus 227 ~t~~~~~~l~~c~~~i~~l 245 (257)
T 1g3n_C 227 ILGCDVSVLQAAVEQILTS 245 (257)
T ss_dssp HHTCCHHHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHHHH
Confidence 5678777776655555544
No 33
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=54.56 E-value=2.6 Score=37.59 Aligned_cols=92 Identities=7% Similarity=-0.051 Sum_probs=0.0
Q ss_pred CCCChhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchhhhccCC
Q 027733 64 TRPTISIHSYLERIFKYANCSPSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFYAKVGGI 143 (219)
Q Consensus 64 ~~P~Isi~~yl~rI~~~~~~s~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~AkVgGi 143 (219)
..|.+...+|+.|+....+++..+.-.|.-.+.+..... .....++.-+-.+|+.+|++..+. ..+.+.-+++.|+
T Consensus 229 ~~~~~~p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~---i~~GR~P~~IAAAaIylAa~l~g~-~~t~~eIa~v~~V 304 (345)
T 4bbr_M 229 NMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIK---EIAGKSPITIAVVSIYLNILLFQI-PITAAKVGQTLQV 304 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcc---cccCCChHHHHHHHHHHHHHHhCC-CCCHHHHHHHHCC
Confidence 367788899999999999999998888887777777632 234567777888999999998754 4677888999999
Q ss_pred CHHHHHHHHHHHHHhc
Q 027733 144 STTEMNLLEVDFLFDL 159 (219)
Q Consensus 144 s~~ELN~LE~~FL~lL 159 (219)
+...+..-=.+|+..+
T Consensus 305 se~TIr~rykel~~~~ 320 (345)
T 4bbr_M 305 TEGTIKSGYKILYEHR 320 (345)
T ss_dssp ----------------
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8877776555554443
No 34
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=48.35 E-value=62 Score=27.01 Aligned_cols=87 Identities=8% Similarity=0.013 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHcCCCHHHHH----HHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhccc----CCcccch----
Q 027733 69 SIHSYLERIFKYANCSPSCFV----VAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDD----IYYNNAF---- 136 (219)
Q Consensus 69 si~~yl~rI~~~~~~s~~~~l----~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD----~~~sN~~---- 136 (219)
+-.+|+.++++..+.+....- .|..+++ +.... ...-...+.-+-.+|+.+|.+.++- ...+...
T Consensus 156 tp~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~-~~~~d--~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~ 232 (271)
T 2w96_A 156 TPHDFIEHFLSKMPEAEENKQIIRKHAQTFVA-LCATD--VKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRF 232 (271)
T ss_dssp CHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-HHHTS--THHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHH
T ss_pred CHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH-HHHhh--hhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHH
Confidence 679999999999998876531 2444444 22221 1122456677888888999887642 2333322
Q ss_pred hhhccCCCHHHHHHHHHHHHHh
Q 027733 137 YAKVGGISTTEMNLLEVDFLFD 158 (219)
Q Consensus 137 ~AkVgGis~~ELN~LE~~FL~l 158 (219)
.+++.|++..++..-=..++.+
T Consensus 233 l~~~~~v~~~~l~~c~~~i~~l 254 (271)
T 2w96_A 233 LSRVIKCDPDCLRACQEQIEAL 254 (271)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHH
Confidence 2345677666665554444443
No 35
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=21.13 E-value=1.5e+02 Score=20.04 Aligned_cols=56 Identities=13% Similarity=0.099 Sum_probs=39.7
Q ss_pred hcccCCcccchhhhccCCCHHHHHHHHHHHHHhcCCceeeCHHHHHHHHHHHH---HHHHhcCCCC
Q 027733 126 FMDDIYYNNAFYAKVGGISTTEMNLLEVDFLFDLGFQLNVTPAAFYTYCSYLQ---REMFLQSPLQ 188 (219)
Q Consensus 126 ~ldD~~~sN~~~AkVgGis~~ELN~LE~~FL~lLdf~L~Vs~eey~~Y~~~L~---~~~~~~~~~~ 188 (219)
......++.+..|+..|++...++.+|.. +-..+.+.+.+.+..+. .++...+..+
T Consensus 17 ~r~~~glsq~~lA~~~gis~~~is~~e~G-------~~~p~~~~l~~ia~~l~v~~~~l~~~~~~~ 75 (94)
T 2kpj_A 17 YIAKSEKTQLEIAKSIGVSPQTFNTWCKG-------IAIPRMGKVQALADYFNINKSDLIEDKKLN 75 (94)
T ss_dssp HHTTSSSCHHHHHHHHTCCHHHHHHHHTT-------SCCCCHHHHHHHHHHHTCCTHHHHSCSCCC
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHhC-------CCCCCHHHHHHHHHHHCcCHHHHhcCCCcc
Confidence 34566788888999999999999999974 23457777777777663 4555444444
No 36
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=20.56 E-value=3.7e+02 Score=22.38 Aligned_cols=76 Identities=16% Similarity=0.120 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHcCCC-----------HHHHHHHHHHHHHHhhhCCCCCCCCccHHHHHHHHHHHHhhhcccCCcccchh
Q 027733 69 SIHSYLERIFKYANCS-----------PSCFVVAYVYLDRFAQKQPSLPINSFNVHRLLITSVLVSAKFMDDIYYNNAFY 137 (219)
Q Consensus 69 si~~yl~rI~~~~~~s-----------~~~~l~ALiYIdRL~~~~p~~~i~~~n~hRL~ltalilAsK~ldD~~~sN~~~ 137 (219)
+..+|+.++.+..+.+ ...+..+..+++--.. ... .-...+.-+-.+|+.+|.. .+.|
T Consensus 150 tp~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~llelsl~-d~~--~l~~~PS~iAaAai~la~~--------~~~l 218 (283)
T 1w98_B 150 TIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVL-DVD--CLEFPYGILAASALYHFSS--------SELM 218 (283)
T ss_dssp CHHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHHHH-SGG--GGGSCHHHHHHHHHHHTSC--------HHHH
T ss_pred CHHHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHHHHHHh-hhh--hhcCCHHHHHHHHHHHHHC--------hHHH
Confidence 5788888888776543 2344444333433222 111 2234555666677777752 5678
Q ss_pred hhccCCCHHHHHHHHHHH
Q 027733 138 AKVGGISTTEMNLLEVDF 155 (219)
Q Consensus 138 AkVgGis~~ELN~LE~~F 155 (219)
.++.|++..++..--..+
T Consensus 219 ~~~tg~~~~~i~~c~~~l 236 (283)
T 1w98_B 219 QKVSGYQWCDIENCVKWM 236 (283)
T ss_dssp HHHSCCCHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHH
Confidence 888999888876544443
Done!