Query 027734
Match_columns 219
No_of_seqs 169 out of 1714
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 14:22:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027734.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027734hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 100.0 9.7E-28 2.1E-32 164.9 17.6 149 45-214 11-159 (160)
2 KOG0027 Calmodulin and related 99.9 2E-25 4.4E-30 156.5 17.2 149 48-212 2-150 (151)
3 PTZ00183 centrin; Provisional 99.9 2.5E-23 5.4E-28 147.5 18.2 150 46-215 9-158 (158)
4 KOG0028 Ca2+-binding protein ( 99.9 7E-23 1.5E-27 137.8 15.9 149 44-212 23-171 (172)
5 PTZ00184 calmodulin; Provision 99.9 1.3E-22 2.8E-27 142.4 17.6 145 47-211 4-148 (149)
6 KOG0031 Myosin regulatory ligh 99.9 1.3E-19 2.9E-24 121.2 15.9 143 46-212 24-166 (171)
7 KOG0030 Myosin essential light 99.8 2.5E-19 5.3E-24 117.9 13.5 145 48-211 5-151 (152)
8 KOG0037 Ca2+-binding protein, 99.8 1.4E-19 3.1E-24 128.4 13.3 140 53-219 56-196 (221)
9 KOG0034 Ca2+/calmodulin-depend 99.8 1.4E-19 3.1E-24 129.0 13.3 149 46-217 25-181 (187)
10 KOG0044 Ca2+ sensor (EF-Hand s 99.8 3.9E-19 8.4E-24 126.7 12.2 147 53-218 25-182 (193)
11 KOG0036 Predicted mitochondria 99.8 1E-17 2.2E-22 129.1 15.5 141 47-213 7-148 (463)
12 KOG4223 Reticulocalbin, calume 99.7 7E-16 1.5E-20 115.8 10.7 160 48-213 71-230 (325)
13 KOG0044 Ca2+ sensor (EF-Hand s 99.7 2.6E-15 5.6E-20 107.2 12.9 149 17-173 17-175 (193)
14 KOG4223 Reticulocalbin, calume 99.6 1E-14 2.3E-19 109.6 10.4 138 54-207 163-301 (325)
15 PLN02964 phosphatidylserine de 99.5 2.1E-12 4.6E-17 107.9 14.1 105 46-173 135-243 (644)
16 KOG0027 Calmodulin and related 99.4 4.6E-12 9.9E-17 88.9 12.4 108 89-215 7-117 (151)
17 PF13499 EF-hand_7: EF-hand do 99.4 1.4E-12 3.1E-17 78.3 7.6 64 146-209 1-66 (66)
18 KOG0038 Ca2+-binding kinase in 99.4 2.3E-12 4.9E-17 85.9 8.6 108 93-219 74-185 (189)
19 PF13499 EF-hand_7: EF-hand do 99.4 3.2E-12 7E-17 76.7 7.7 62 55-116 1-66 (66)
20 cd05022 S-100A13 S-100A13: S-1 99.4 3.6E-12 7.9E-17 80.3 8.2 69 51-119 5-76 (89)
21 COG5126 FRQ1 Ca2+-binding prot 99.4 3.3E-11 7.1E-16 83.4 13.6 137 17-173 8-156 (160)
22 cd05022 S-100A13 S-100A13: S-1 99.4 4E-12 8.7E-17 80.1 7.3 67 144-212 7-76 (89)
23 KOG0034 Ca2+/calmodulin-depend 99.4 6.3E-11 1.4E-15 84.8 14.0 139 23-174 27-176 (187)
24 PTZ00183 centrin; Provisional 99.3 3.9E-11 8.6E-16 84.8 12.6 104 90-213 17-120 (158)
25 KOG0037 Ca2+-binding protein, 99.3 2.1E-11 4.5E-16 87.2 9.7 88 52-164 122-209 (221)
26 cd05027 S-100B S-100B: S-100B 99.3 3.4E-11 7.4E-16 76.0 9.0 69 51-119 5-80 (88)
27 cd05027 S-100B S-100B: S-100B 99.3 2.8E-11 6.1E-16 76.4 8.1 67 144-212 7-80 (88)
28 KOG0377 Protein serine/threoni 99.3 1E-10 2.3E-15 91.6 12.9 149 54-211 464-615 (631)
29 PTZ00184 calmodulin; Provision 99.3 1.8E-10 3.8E-15 80.5 12.6 104 90-213 11-114 (149)
30 smart00027 EH Eps15 homology d 99.3 7.4E-11 1.6E-15 76.2 9.1 74 47-122 3-76 (96)
31 cd05031 S-100A10_like S-100A10 99.2 8E-11 1.7E-15 75.7 6.3 70 144-215 7-83 (94)
32 cd05029 S-100A6 S-100A6: S-100 99.2 3.4E-10 7.3E-15 71.5 8.8 70 50-119 6-80 (88)
33 cd05026 S-100Z S-100Z: S-100Z 99.2 2.1E-10 4.5E-15 73.5 8.0 69 144-212 9-82 (93)
34 cd05026 S-100Z S-100Z: S-100Z 99.2 3.6E-10 7.9E-15 72.3 9.0 69 51-119 7-82 (93)
35 cd05029 S-100A6 S-100A6: S-100 99.2 2.6E-10 5.6E-15 72.0 8.1 67 144-212 9-80 (88)
36 PF13833 EF-hand_8: EF-hand do 99.2 2E-10 4.4E-15 65.9 6.8 53 158-211 1-53 (54)
37 cd05025 S-100A1 S-100A1: S-100 99.2 3E-10 6.6E-15 72.7 8.2 71 144-214 8-83 (92)
38 cd05025 S-100A1 S-100A1: S-100 99.1 5.3E-10 1.1E-14 71.6 8.9 68 52-119 7-81 (92)
39 cd05031 S-100A10_like S-100A10 99.1 4.6E-10 1E-14 72.1 8.7 68 52-119 6-80 (94)
40 cd00052 EH Eps15 homology doma 99.1 3E-10 6.5E-15 68.3 7.0 62 148-213 2-63 (67)
41 cd00213 S-100 S-100: S-100 dom 99.1 5E-10 1.1E-14 71.1 8.4 70 50-119 4-80 (88)
42 cd00052 EH Eps15 homology doma 99.1 4.6E-10 9.9E-15 67.5 7.2 61 57-119 2-62 (67)
43 smart00027 EH Eps15 homology d 99.1 5.7E-10 1.2E-14 72.0 7.8 66 142-211 7-72 (96)
44 PF13833 EF-hand_8: EF-hand do 99.1 5.5E-10 1.2E-14 64.1 6.7 52 67-118 1-53 (54)
45 cd00252 SPARC_EC SPARC_EC; ext 99.1 8.9E-10 1.9E-14 72.9 7.6 66 142-213 45-110 (116)
46 cd00252 SPARC_EC SPARC_EC; ext 99.1 2.5E-09 5.4E-14 70.8 9.4 67 47-117 41-107 (116)
47 cd00051 EFh EF-hand, calcium b 99.0 1.5E-09 3.3E-14 63.8 7.6 61 147-209 2-62 (63)
48 cd05023 S-100A11 S-100A11: S-1 99.0 2.6E-09 5.7E-14 67.5 8.9 70 50-119 5-81 (89)
49 cd00213 S-100 S-100: S-100 dom 99.0 6.2E-10 1.3E-14 70.7 6.1 72 142-213 5-81 (88)
50 KOG0028 Ca2+-binding protein ( 99.0 6.1E-09 1.3E-13 70.9 10.9 103 52-173 67-170 (172)
51 KOG4251 Calcium binding protei 99.0 2.3E-09 4.9E-14 78.1 9.0 67 50-116 97-166 (362)
52 cd05023 S-100A11 S-100A11: S-1 99.0 2.8E-09 6.1E-14 67.4 7.8 70 143-212 7-81 (89)
53 KOG2562 Protein phosphatase 2 99.0 1.1E-08 2.3E-13 81.0 12.7 130 57-208 281-421 (493)
54 cd00051 EFh EF-hand, calcium b 99.0 3E-09 6.6E-14 62.5 7.7 61 56-116 2-62 (63)
55 PLN02964 phosphatidylserine de 99.0 8E-09 1.7E-13 86.8 11.8 121 69-212 119-244 (644)
56 KOG2643 Ca2+ binding protein, 98.9 1.5E-08 3.3E-13 79.6 10.0 134 53-212 317-454 (489)
57 PF14658 EF-hand_9: EF-hand do 98.8 1.8E-08 4E-13 58.8 6.7 62 149-211 2-64 (66)
58 cd05030 calgranulins Calgranul 98.8 2.8E-08 6.1E-13 62.9 8.0 69 51-119 5-80 (88)
59 KOG0036 Predicted mitochondria 98.8 1.1E-07 2.4E-12 74.4 12.4 128 51-209 48-181 (463)
60 cd05030 calgranulins Calgranul 98.8 2.4E-08 5.3E-13 63.2 6.8 69 144-212 7-80 (88)
61 KOG0041 Predicted Ca2+-binding 98.8 2.8E-07 6.2E-12 65.2 11.4 111 48-173 93-203 (244)
62 PF14658 EF-hand_9: EF-hand do 98.8 5.4E-08 1.2E-12 56.8 6.6 60 59-118 3-64 (66)
63 KOG0041 Predicted Ca2+-binding 98.7 8.9E-08 1.9E-12 67.7 7.7 68 143-212 97-164 (244)
64 KOG0040 Ca2+-binding actin-bun 98.7 3.9E-07 8.4E-12 81.2 13.2 142 42-210 2241-2397(2399)
65 KOG2643 Ca2+ binding protein, 98.7 1.4E-07 3E-12 74.4 9.1 138 64-211 209-346 (489)
66 PF12763 EF-hand_4: Cytoskelet 98.6 2.9E-07 6.4E-12 59.7 7.1 70 47-119 3-72 (104)
67 cd05024 S-100A10 S-100A10: A s 98.6 1.2E-06 2.5E-11 55.0 9.0 67 52-119 6-77 (91)
68 PF00036 EF-hand_1: EF hand; 98.6 1.6E-07 3.4E-12 46.0 4.0 27 184-210 1-27 (29)
69 PF00036 EF-hand_1: EF hand; 98.5 1.4E-07 3E-12 46.2 3.5 28 147-174 2-29 (29)
70 KOG4666 Predicted phosphate ac 98.5 1.8E-07 4E-12 70.9 5.7 107 90-218 259-366 (412)
71 KOG0169 Phosphoinositide-speci 98.5 6.8E-06 1.5E-10 69.4 14.5 147 45-214 127-277 (746)
72 KOG0038 Ca2+-binding kinase in 98.4 1.6E-06 3.6E-11 58.3 7.4 103 57-173 74-177 (189)
73 cd05024 S-100A10 S-100A10: A s 98.4 3.4E-06 7.3E-11 52.9 8.1 67 144-211 7-76 (91)
74 KOG0751 Mitochondrial aspartat 98.4 1.4E-05 3.1E-10 64.2 13.3 104 52-176 31-139 (694)
75 KOG1029 Endocytic adaptor prot 98.4 9.6E-06 2.1E-10 68.4 12.7 158 46-210 8-256 (1118)
76 PF13405 EF-hand_6: EF-hand do 98.4 6.4E-07 1.4E-11 44.8 3.6 29 147-175 2-31 (31)
77 KOG0031 Myosin regulatory ligh 98.4 2.9E-06 6.2E-11 57.7 7.4 67 51-117 98-164 (171)
78 PF13405 EF-hand_6: EF-hand do 98.3 1.7E-06 3.7E-11 43.2 3.7 30 55-84 1-31 (31)
79 KOG0030 Myosin essential light 98.2 2.3E-05 4.9E-10 52.5 9.3 107 89-214 10-119 (152)
80 PF12763 EF-hand_4: Cytoskelet 98.2 1.6E-05 3.4E-10 51.7 8.2 65 141-210 6-70 (104)
81 PF14788 EF-hand_10: EF hand; 98.2 1E-05 2.2E-10 44.6 5.8 50 70-119 1-50 (51)
82 PF13202 EF-hand_5: EF hand; P 98.2 3E-06 6.6E-11 39.9 3.1 23 148-170 2-24 (25)
83 PRK12309 transaldolase/EF-hand 98.2 7E-06 1.5E-10 65.8 6.9 56 141-211 330-385 (391)
84 KOG0040 Ca2+-binding actin-bun 98.1 7.5E-06 1.6E-10 73.4 7.1 75 140-214 2248-2327(2399)
85 PF14788 EF-hand_10: EF hand; 98.1 1.8E-05 3.9E-10 43.6 6.0 49 161-211 1-49 (51)
86 KOG0377 Protein serine/threoni 98.1 1.1E-05 2.5E-10 64.0 7.2 67 54-120 547-617 (631)
87 KOG0751 Mitochondrial aspartat 98.1 1.6E-05 3.6E-10 63.9 7.8 112 63-176 83-210 (694)
88 PF10591 SPARC_Ca_bdg: Secrete 98.1 1.8E-06 4E-11 57.1 1.7 63 142-208 51-113 (113)
89 PF13202 EF-hand_5: EF hand; P 98.1 8.8E-06 1.9E-10 38.3 3.6 25 185-209 1-25 (25)
90 PRK12309 transaldolase/EF-hand 98.0 1.5E-05 3.2E-10 64.0 6.8 57 51-120 331-387 (391)
91 KOG2562 Protein phosphatase 2 98.0 8.5E-05 1.8E-09 59.5 10.2 163 23-210 191-378 (493)
92 PF10591 SPARC_Ca_bdg: Secrete 98.0 3.8E-06 8.1E-11 55.6 2.4 65 48-114 48-112 (113)
93 KOG0046 Ca2+-binding actin-bun 97.9 4.9E-05 1.1E-09 61.7 8.0 77 45-122 10-89 (627)
94 PF09279 EF-hand_like: Phospho 97.9 7.1E-05 1.5E-09 46.7 6.9 67 147-214 2-72 (83)
95 KOG1707 Predicted Ras related/ 97.9 0.00028 6E-09 58.5 11.3 161 44-209 185-375 (625)
96 KOG4065 Uncharacterized conser 97.6 0.00019 4E-09 46.5 4.8 60 149-208 71-142 (144)
97 KOG4251 Calcium binding protei 97.5 4.6E-05 1E-09 56.0 1.7 67 142-208 98-165 (362)
98 KOG3555 Ca2+-binding proteogly 97.4 0.00049 1.1E-08 53.2 6.0 99 54-175 211-312 (434)
99 KOG0046 Ca2+-binding actin-bun 97.4 0.0006 1.3E-08 55.6 6.7 69 142-211 16-85 (627)
100 PF05042 Caleosin: Caleosin re 97.4 0.0061 1.3E-07 42.9 10.5 149 55-209 8-164 (174)
101 KOG4666 Predicted phosphate ac 97.2 0.0017 3.7E-08 50.0 6.8 102 54-175 259-361 (412)
102 KOG3555 Ca2+-binding proteogly 97.1 0.0031 6.7E-08 48.9 7.4 70 139-214 244-313 (434)
103 smart00054 EFh EF-hand, calciu 97.0 0.001 2.2E-08 31.6 3.1 26 56-81 2-27 (29)
104 smart00054 EFh EF-hand, calciu 97.0 0.0016 3.4E-08 30.9 3.4 24 148-171 3-26 (29)
105 PF09279 EF-hand_like: Phospho 96.9 0.0046 9.9E-08 38.5 5.7 65 55-120 1-71 (83)
106 KOG1955 Ral-GTPase effector RA 96.8 0.0044 9.5E-08 50.4 6.2 74 46-121 223-296 (737)
107 KOG4065 Uncharacterized conser 96.8 0.04 8.8E-07 35.9 9.3 59 57-115 70-142 (144)
108 KOG0035 Ca2+-binding actin-bun 96.4 0.026 5.6E-07 49.7 9.1 104 47-169 740-848 (890)
109 PLN02952 phosphoinositide phos 96.4 0.045 9.8E-07 46.6 10.3 92 103-212 13-111 (599)
110 KOG0998 Synaptic vesicle prote 96.4 0.0061 1.3E-07 54.2 5.5 158 46-210 121-344 (847)
111 KOG0169 Phosphoinositide-speci 96.3 0.051 1.1E-06 46.8 9.8 100 88-212 134-233 (746)
112 KOG4578 Uncharacterized conser 96.3 0.0042 9.2E-08 47.9 3.1 66 144-213 332-400 (421)
113 KOG1955 Ral-GTPase effector RA 96.2 0.014 3.1E-07 47.6 6.1 70 137-210 223-292 (737)
114 KOG1029 Endocytic adaptor prot 96.0 0.013 2.8E-07 50.3 5.0 68 48-117 189-256 (1118)
115 KOG0042 Glycerol-3-phosphate d 95.2 0.06 1.3E-06 45.0 6.0 77 46-122 585-661 (680)
116 PF09069 EF-hand_3: EF-hand; 94.8 0.32 7E-06 30.6 7.1 68 145-215 3-79 (90)
117 KOG4578 Uncharacterized conser 94.6 0.03 6.5E-07 43.4 2.6 66 91-174 334-399 (421)
118 PF05042 Caleosin: Caleosin re 94.2 0.36 7.9E-06 34.2 7.1 71 144-214 6-127 (174)
119 PF05517 p25-alpha: p25-alpha 93.8 0.54 1.2E-05 33.0 7.5 62 58-119 3-70 (154)
120 PF05517 p25-alpha: p25-alpha 93.8 0.62 1.3E-05 32.7 7.8 64 148-211 2-69 (154)
121 KOG1265 Phospholipase C [Lipid 93.7 3 6.5E-05 37.3 12.8 127 65-216 159-304 (1189)
122 KOG4347 GTPase-activating prot 92.7 0.23 5.1E-06 42.2 4.9 102 46-167 496-612 (671)
123 KOG0042 Glycerol-3-phosphate d 92.3 0.33 7.2E-06 40.8 5.2 69 141-211 589-657 (680)
124 KOG4347 GTPase-activating prot 92.2 0.26 5.6E-06 41.9 4.6 78 107-205 535-612 (671)
125 PF08726 EFhand_Ca_insen: Ca2+ 91.6 0.1 2.2E-06 31.1 1.2 56 143-208 4-66 (69)
126 KOG3866 DNA-binding protein of 91.4 0.73 1.6E-05 35.8 5.8 68 146-213 245-326 (442)
127 KOG3866 DNA-binding protein of 91.0 0.32 7E-06 37.6 3.6 62 58-119 248-325 (442)
128 KOG1707 Predicted Ras related/ 90.9 0.63 1.4E-05 39.4 5.5 99 14-119 276-378 (625)
129 KOG2243 Ca2+ release channel ( 90.9 0.52 1.1E-05 43.9 5.2 57 59-116 4062-4118(5019)
130 KOG0998 Synaptic vesicle prote 90.8 0.53 1.1E-05 42.4 5.3 152 54-212 11-191 (847)
131 KOG2243 Ca2+ release channel ( 90.8 0.51 1.1E-05 44.0 5.1 59 150-211 4062-4120(5019)
132 PLN02228 Phosphoinositide phos 89.5 3.4 7.4E-05 35.4 8.7 69 142-212 21-93 (567)
133 PLN02222 phosphoinositide phos 89.4 1.9 4.2E-05 37.0 7.3 68 143-212 23-91 (581)
134 PLN02952 phosphoinositide phos 87.9 7.9 0.00017 33.5 10.0 88 67-172 13-109 (599)
135 KOG0035 Ca2+-binding actin-bun 87.9 2.1 4.5E-05 38.4 6.6 74 142-215 744-820 (890)
136 PLN02230 phosphoinositide phos 87.5 4.9 0.00011 34.7 8.5 70 142-212 26-103 (598)
137 cd07313 terB_like_2 tellurium 87.2 3.9 8.3E-05 26.3 6.3 84 67-170 12-97 (104)
138 PF14513 DAG_kinase_N: Diacylg 84.8 3.4 7.3E-05 28.4 5.2 71 68-158 5-82 (138)
139 PLN02223 phosphoinositide phos 84.0 6.8 0.00015 33.3 7.6 70 142-212 13-93 (537)
140 KOG1264 Phospholipase C [Lipid 82.8 14 0.00031 33.1 9.1 150 48-214 137-296 (1267)
141 PF08976 DUF1880: Domain of un 81.8 1.4 3E-05 29.0 2.2 33 87-119 4-36 (118)
142 PF08976 DUF1880: Domain of un 80.6 1.7 3.7E-05 28.6 2.4 32 180-211 4-35 (118)
143 PF09069 EF-hand_3: EF-hand; 80.2 12 0.00027 23.6 8.0 63 54-119 3-76 (90)
144 PF08414 NADPH_Ox: Respiratory 79.7 12 0.00027 24.0 5.9 61 144-211 29-92 (100)
145 PRK09430 djlA Dna-J like membr 79.5 22 0.00047 27.5 8.5 54 66-120 67-122 (267)
146 PF02761 Cbl_N2: CBL proto-onc 77.9 14 0.00031 23.0 6.5 68 87-174 4-71 (85)
147 cd07313 terB_like_2 tellurium 77.0 3.7 8.1E-05 26.4 3.3 53 159-211 13-65 (104)
148 PF07308 DUF1456: Protein of u 76.2 14 0.0003 22.0 5.2 49 71-119 14-62 (68)
149 KOG4004 Matricellular protein 74.4 2.2 4.7E-05 31.0 1.7 58 149-210 191-249 (259)
150 PF14513 DAG_kinase_N: Diacylg 73.0 4.9 0.00011 27.6 3.1 50 158-211 4-60 (138)
151 PF08726 EFhand_Ca_insen: Ca2+ 72.9 5.6 0.00012 23.7 2.9 53 54-114 6-65 (69)
152 KOG4286 Dystrophin-like protei 72.4 61 0.0013 29.0 9.8 136 55-214 421-583 (966)
153 PF09068 EF-hand_2: EF hand; 72.2 15 0.00032 24.9 5.2 87 87-174 38-126 (127)
154 PF13608 Potyvirid-P3: Protein 70.7 25 0.00053 29.5 7.2 67 51-119 286-356 (445)
155 cd02977 ArsC_family Arsenate R 70.7 18 0.00039 23.2 5.3 61 153-217 28-91 (105)
156 PF11116 DUF2624: Protein of u 70.3 23 0.00051 22.0 6.8 51 69-119 13-63 (85)
157 KOG4004 Matricellular protein 69.7 1.9 4.2E-05 31.2 0.6 31 141-171 218-248 (259)
158 PF00404 Dockerin_1: Dockerin 69.6 8.1 0.00018 17.1 2.4 15 64-78 1-15 (21)
159 KOG3077 Uncharacterized conser 68.8 18 0.0004 27.7 5.5 68 52-119 62-130 (260)
160 KOG4403 Cell surface glycoprot 68.8 32 0.00069 28.4 7.1 99 66-187 40-142 (575)
161 PLN02222 phosphoinositide phos 67.8 28 0.0006 30.3 7.0 64 54-119 25-91 (581)
162 PF12174 RST: RCD1-SRO-TAF4 (R 67.7 13 0.00028 22.3 3.7 50 70-122 8-57 (70)
163 KOG0039 Ferric reductase, NADH 67.6 12 0.00027 32.9 5.1 73 141-214 14-92 (646)
164 PLN02228 Phosphoinositide phos 67.6 32 0.00069 29.8 7.3 66 52-119 22-93 (567)
165 KOG2871 Uncharacterized conser 67.0 3.9 8.5E-05 32.8 1.8 69 142-211 306-374 (449)
166 KOG2871 Uncharacterized conser 66.5 5.1 0.00011 32.1 2.3 67 53-119 308-375 (449)
167 PF02761 Cbl_N2: CBL proto-onc 66.4 29 0.00063 21.6 5.6 52 68-119 20-71 (85)
168 KOG1954 Endocytosis/signaling 65.4 36 0.00078 27.9 6.7 60 53-115 443-502 (532)
169 PF03672 UPF0154: Uncharacteri 64.6 26 0.00057 20.5 7.1 31 69-99 30-60 (64)
170 PLN02230 phosphoinositide phos 64.1 42 0.00091 29.3 7.4 67 52-119 27-103 (598)
171 PF12174 RST: RCD1-SRO-TAF4 (R 63.3 24 0.00053 21.0 4.3 30 145-174 25-54 (70)
172 KOG1265 Phospholipase C [Lipid 63.2 1.3E+02 0.0027 27.9 11.2 89 98-213 156-251 (1189)
173 COG3763 Uncharacterized protei 59.5 35 0.00077 20.3 7.7 31 69-99 37-67 (71)
174 PF08414 NADPH_Ox: Respiratory 59.0 46 0.00099 21.4 6.0 62 54-120 30-94 (100)
175 PRK00523 hypothetical protein; 58.1 39 0.00084 20.3 8.2 30 70-99 39-68 (72)
176 TIGR01639 P_fal_TIGR01639 Plas 57.4 28 0.00061 20.1 3.8 31 69-99 8-38 (61)
177 PF01023 S_100: S-100/ICaBP ty 56.4 30 0.00064 18.5 4.4 31 52-82 4-36 (44)
178 PF07172 GRP: Glycine rich pro 56.3 19 0.00041 23.0 3.2 28 1-28 1-28 (95)
179 cd03035 ArsC_Yffb Arsenate Red 56.1 12 0.00026 24.3 2.4 54 159-217 33-89 (105)
180 KOG4070 Putative signal transd 55.8 28 0.00061 24.2 4.1 65 56-120 14-87 (180)
181 TIGR01848 PHA_reg_PhaR polyhyd 55.3 40 0.00087 22.0 4.5 62 152-213 10-79 (107)
182 cd07176 terB tellurite resista 55.0 15 0.00033 23.6 2.8 81 67-168 15-100 (111)
183 PRK01844 hypothetical protein; 54.9 45 0.00097 20.0 8.2 30 70-99 38-67 (72)
184 PRK10026 arsenate reductase; P 53.1 17 0.00037 25.1 2.8 55 159-217 36-93 (141)
185 PF05099 TerB: Tellurite resis 51.9 19 0.00042 24.3 3.1 104 53-177 23-131 (140)
186 PF03960 ArsC: ArsC family; I 51.2 9.3 0.0002 24.9 1.3 58 159-217 30-88 (110)
187 TIGR03573 WbuX N-acetyl sugar 50.5 44 0.00096 26.9 5.2 44 158-209 299-342 (343)
188 PF09068 EF-hand_2: EF hand; 50.3 77 0.0017 21.4 7.0 67 51-117 38-124 (127)
189 KOG1785 Tyrosine kinase negati 50.2 1.2E+02 0.0026 25.0 7.4 84 69-174 189-275 (563)
190 COG3462 Predicted membrane pro 50.1 71 0.0015 20.9 5.1 17 67-83 99-115 (117)
191 PF13623 SurA_N_2: SurA N-term 49.4 87 0.0019 21.7 9.2 39 76-114 95-143 (145)
192 PF07308 DUF1456: Protein of u 48.8 56 0.0012 19.4 4.8 28 164-193 16-43 (68)
193 COG5069 SAC6 Ca2+-binding acti 48.7 1.2E+02 0.0027 25.7 7.4 67 52-119 483-549 (612)
194 PF05099 TerB: Tellurite resis 48.7 4.7 0.0001 27.4 -0.5 54 158-211 36-89 (140)
195 PF15102 TMEM154: TMEM154 prot 48.2 7.8 0.00017 26.8 0.6 22 64-85 118-139 (146)
196 cd03034 ArsC_ArsC Arsenate Red 47.9 77 0.0017 20.7 5.5 55 159-217 33-90 (112)
197 KOG2301 Voltage-gated Ca2+ cha 46.7 33 0.00072 33.6 4.4 74 47-121 1410-1487(1592)
198 smart00513 SAP Putative DNA-bi 46.3 38 0.00083 16.8 4.5 29 161-189 3-31 (35)
199 PF02037 SAP: SAP domain; Int 46.2 39 0.00085 16.9 4.3 30 161-190 3-32 (35)
200 cd03032 ArsC_Spx Arsenate Redu 45.7 33 0.00071 22.5 3.3 55 159-217 34-91 (115)
201 cd07316 terB_like_DjlA N-termi 43.6 84 0.0018 19.9 6.5 84 67-168 12-96 (106)
202 PLN02223 phosphoinositide phos 43.4 1.3E+02 0.0028 26.0 7.0 67 53-120 15-94 (537)
203 KOG0506 Glutaminase (contains 42.5 70 0.0015 27.0 5.1 100 58-161 90-197 (622)
204 PF09107 SelB-wing_3: Elongati 41.4 62 0.0014 17.8 3.6 31 158-195 7-37 (50)
205 KOG0039 Ferric reductase, NADH 40.4 64 0.0014 28.6 5.0 89 68-174 2-90 (646)
206 PF11116 DUF2624: Protein of u 40.1 93 0.002 19.4 6.2 35 160-196 13-47 (85)
207 PRK13344 spxA transcriptional 39.8 33 0.00072 23.3 2.6 55 159-217 34-91 (132)
208 PRK12559 transcriptional regul 39.6 41 0.00089 22.8 3.0 55 159-217 34-91 (131)
209 TIGR00014 arsC arsenate reduct 39.2 1.1E+02 0.0024 20.0 5.6 56 159-217 33-91 (114)
210 PF09336 Vps4_C: Vps4 C termin 38.9 60 0.0013 18.8 3.3 25 70-94 29-53 (62)
211 COG5562 Phage envelope protein 38.1 32 0.0007 23.4 2.2 28 188-215 77-104 (137)
212 PF13551 HTH_29: Winged helix- 37.4 1.1E+02 0.0024 19.4 7.7 52 48-99 58-111 (112)
213 PF07879 PHB_acc_N: PHB/PHA ac 37.1 27 0.00059 20.4 1.5 22 152-173 10-31 (64)
214 KOG2301 Voltage-gated Ca2+ cha 36.4 25 0.00054 34.4 2.1 73 139-211 1411-1484(1592)
215 PF11829 DUF3349: Protein of u 36.0 1.2E+02 0.0026 19.5 4.9 52 71-122 20-71 (96)
216 PF03979 Sigma70_r1_1: Sigma-7 35.5 56 0.0012 20.0 2.9 44 145-194 7-50 (82)
217 cd03036 ArsC_like Arsenate Red 34.7 58 0.0013 21.2 3.1 63 151-217 26-92 (111)
218 PF08461 HTH_12: Ribonuclease 33.7 76 0.0016 18.6 3.2 37 67-103 10-46 (66)
219 TIGR00624 tag DNA-3-methyladen 33.5 1.9E+02 0.0041 21.0 6.5 114 52-176 51-168 (179)
220 cd08330 CARD_ASC_NALP1 Caspase 33.0 98 0.0021 19.0 3.7 48 158-212 26-73 (82)
221 PRK01655 spxA transcriptional 32.8 72 0.0016 21.6 3.4 55 159-217 34-91 (131)
222 COG4359 Uncharacterized conser 32.5 2E+02 0.0044 21.1 6.4 82 102-216 9-92 (220)
223 KOG4629 Predicted mechanosensi 32.1 1.1E+02 0.0025 27.4 5.2 60 143-211 402-461 (714)
224 TIGR01550 DOC_P1 death-on-curi 30.8 1.7E+02 0.0036 19.6 5.4 51 157-210 69-120 (121)
225 TIGR03573 WbuX N-acetyl sugar 30.4 1.5E+02 0.0032 23.9 5.3 33 68-100 300-332 (343)
226 KOG0871 Class 2 transcription 30.1 1.8E+02 0.004 20.2 4.8 29 150-178 55-83 (156)
227 PF12486 DUF3702: ImpA domain 29.7 1.1E+02 0.0024 21.4 3.9 33 51-83 66-98 (148)
228 PF09373 PMBR: Pseudomurein-bi 29.0 65 0.0014 15.8 2.0 15 197-211 2-16 (33)
229 PF07499 RuvA_C: RuvA, C-termi 28.5 1E+02 0.0022 16.5 4.5 39 164-208 3-41 (47)
230 PF03683 UPF0175: Uncharacteri 28.0 1.3E+02 0.0027 18.2 3.6 10 159-168 32-41 (76)
231 cd03033 ArsC_15kD Arsenate Red 27.6 1.8E+02 0.004 19.1 4.6 53 159-217 34-89 (113)
232 COG4807 Uncharacterized protei 27.5 2E+02 0.0044 19.6 8.4 125 75-211 20-145 (155)
233 TIGR00847 ccoS cytochrome oxid 27.0 1E+02 0.0022 17.2 2.7 22 1-22 1-22 (51)
234 PF12419 DUF3670: SNF2 Helicas 26.7 1.3E+02 0.0028 20.7 3.9 51 158-208 80-138 (141)
235 cd07177 terB_like tellurium re 26.4 1.7E+02 0.0036 18.1 5.6 17 67-83 12-28 (104)
236 KOG3449 60S acidic ribosomal p 26.3 2E+02 0.0043 19.0 6.5 45 147-193 3-47 (112)
237 PRK00819 RNA 2'-phosphotransfe 26.3 1.6E+02 0.0036 21.3 4.4 36 65-100 28-63 (179)
238 PF01885 PTS_2-RNA: RNA 2'-pho 26.2 1.4E+02 0.003 21.7 4.1 38 64-101 26-63 (186)
239 KOG0506 Glutaminase (contains 26.0 1.8E+02 0.0039 24.8 5.0 66 148-215 89-162 (622)
240 KOG1954 Endocytosis/signaling 25.9 1.1E+02 0.0023 25.3 3.6 59 144-207 443-501 (532)
241 KOG4286 Dystrophin-like protei 25.9 3.8E+02 0.0083 24.4 7.1 139 50-196 375-519 (966)
242 COG1393 ArsC Arsenate reductas 25.4 1E+02 0.0022 20.5 3.0 54 159-216 35-91 (117)
243 TIGR01616 nitro_assoc nitrogen 25.2 73 0.0016 21.5 2.4 53 159-217 35-90 (126)
244 PF06667 PspB: Phage shock pro 25.0 1.4E+02 0.0031 18.1 3.3 17 47-63 35-51 (75)
245 TIGR02574 stabl_TIGR02574 puta 24.5 1.5E+02 0.0033 17.0 6.4 33 48-80 28-60 (63)
246 PF01885 PTS_2-RNA: RNA 2'-pho 24.4 1.6E+02 0.0034 21.5 4.1 38 155-194 26-63 (186)
247 KOG3077 Uncharacterized conser 23.3 3.6E+02 0.0078 20.9 6.8 68 144-213 63-131 (260)
248 KOG4301 Beta-dystrobrevin [Cyt 23.2 3.1E+02 0.0067 22.2 5.6 76 46-122 100-177 (434)
249 PRK10353 3-methyl-adenine DNA 22.5 3.2E+02 0.0069 20.0 5.5 116 52-176 52-171 (187)
250 KOG2023 Nuclear transport rece 22.0 1.4E+02 0.003 26.7 3.8 97 19-117 772-872 (885)
251 PF09412 XendoU: Endoribonucle 22.0 3.5E+02 0.0075 21.1 5.7 66 54-119 64-131 (265)
252 COG4103 Uncharacterized protei 21.4 2.9E+02 0.0063 19.2 10.7 103 48-172 24-128 (148)
253 cd08327 CARD_RAIDD Caspase act 21.4 1.9E+02 0.0042 18.4 3.6 50 158-214 32-81 (94)
254 PF10440 WIYLD: Ubiquitin-bind 21.0 1.2E+02 0.0026 17.9 2.3 27 169-195 16-42 (65)
255 PF02885 Glycos_trans_3N: Glyc 20.2 1.9E+02 0.0042 16.7 4.2 14 161-174 14-27 (66)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.96 E-value=9.7e-28 Score=164.92 Aligned_cols=149 Identities=34% Similarity=0.619 Sum_probs=140.3
Q ss_pred CCcccHhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCc
Q 027734 45 ESRTSAYKKAELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDR 124 (219)
Q Consensus 45 ~~~~~~~~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~ 124 (219)
-..+++++++++++.|..+|++++|.|+..+|..+++.+|.+++..++..++..+|. +.+.|+|.+|+.++......
T Consensus 11 ~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~-- 87 (160)
T COG5126 11 FTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKR-- 87 (160)
T ss_pred cccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhcc--
Confidence 356889999999999999999999999999999999999999999999999999999 89999999999999988766
Q ss_pred cccCCCCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHH
Q 027734 125 QEKGGAGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDE 204 (219)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~e 204 (219)
....+.++++|+.||.|++|+|+..+++++++.+|. .+++++++.+++.+|.|++|.|+|++
T Consensus 88 ----------------~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge--~~~deev~~ll~~~d~d~dG~i~~~e 149 (160)
T COG5126 88 ----------------GDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGE--RLSDEEVEKLLKEYDEDGDGEIDYEE 149 (160)
T ss_pred ----------------CCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcc--cCCHHHHHHHHHhcCCCCCceEeHHH
Confidence 577899999999999999999999999999999995 46999999999999999999999999
Q ss_pred HHHHHHhCCc
Q 027734 205 FRRMMKAGGV 214 (219)
Q Consensus 205 F~~~l~~~~~ 214 (219)
|.+.+...+.
T Consensus 150 F~~~~~~~~~ 159 (160)
T COG5126 150 FKKLIKDSPT 159 (160)
T ss_pred HHHHHhccCC
Confidence 9999887764
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.94 E-value=2e-25 Score=156.55 Aligned_cols=149 Identities=47% Similarity=0.719 Sum_probs=133.6
Q ss_pred ccHhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCcccc
Q 027734 48 TSAYKKAELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEK 127 (219)
Q Consensus 48 ~~~~~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~ 127 (219)
.+..+...++.+|..+|.+++|+|+..|+..+++.++..++..++..++..+|.+++|.|+++||+.++...........
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~ 81 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEE 81 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccc
Confidence 45677889999999999999999999999999999999999999999999999999999999999999987755411110
Q ss_pred CCCCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHH
Q 027734 128 GGAGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRR 207 (219)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~ 207 (219)
.....++.+|+.+|.+++|+||.+|+++++..+|.+. +.+++..+++..|.|+||.|+|++|+.
T Consensus 82 --------------~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~--~~~e~~~mi~~~d~d~dg~i~f~ef~~ 145 (151)
T KOG0027|consen 82 --------------ASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKL--TDEECKEMIREVDVDGDGKVNFEEFVK 145 (151)
T ss_pred --------------ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcC--CHHHHHHHHHhcCCCCCCeEeHHHHHH
Confidence 2345899999999999999999999999999999664 899999999999999999999999999
Q ss_pred HHHhC
Q 027734 208 MMKAG 212 (219)
Q Consensus 208 ~l~~~ 212 (219)
.+...
T Consensus 146 ~m~~~ 150 (151)
T KOG0027|consen 146 MMSGK 150 (151)
T ss_pred HHhcC
Confidence 98754
No 3
>PTZ00183 centrin; Provisional
Probab=99.92 E-value=2.5e-23 Score=147.50 Aligned_cols=150 Identities=34% Similarity=0.565 Sum_probs=134.7
Q ss_pred CcccHhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCcc
Q 027734 46 SRTSAYKKAELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQ 125 (219)
Q Consensus 46 ~~~~~~~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~ 125 (219)
...++.+...+..+|..+|++++|.|+..||..++..++..++...+..++..+|.+++|.|+|+||...+......
T Consensus 9 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~--- 85 (158)
T PTZ00183 9 PGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGE--- 85 (158)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcC---
Confidence 34778889999999999999999999999999999999888889999999999999999999999999987654322
Q ss_pred ccCCCCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHH
Q 027734 126 EKGGAGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEF 205 (219)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF 205 (219)
......++.+|+.+|.+++|.|+.+||..++...|.+ ++..++..++..+|.+++|.|++++|
T Consensus 86 ---------------~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~--l~~~~~~~~~~~~d~~~~g~i~~~ef 148 (158)
T PTZ00183 86 ---------------RDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGET--ITDEELQEMIDEADRNGDGEISEEEF 148 (158)
T ss_pred ---------------CCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCC--CCHHHHHHHHHHhCCCCCCcCcHHHH
Confidence 2345678999999999999999999999999998854 58999999999999999999999999
Q ss_pred HHHHHhCCcc
Q 027734 206 RRMMKAGGVL 215 (219)
Q Consensus 206 ~~~l~~~~~~ 215 (219)
..++...|++
T Consensus 149 ~~~~~~~~~~ 158 (158)
T PTZ00183 149 YRIMKKTNLF 158 (158)
T ss_pred HHHHhcccCC
Confidence 9999988764
No 4
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=7e-23 Score=137.79 Aligned_cols=149 Identities=37% Similarity=0.524 Sum_probs=139.4
Q ss_pred CCCcccHhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCC
Q 027734 44 GESRTSAYKKAELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGD 123 (219)
Q Consensus 44 ~~~~~~~~~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~ 123 (219)
....+++++.+.++..|..+|++++|+|...||+.+++.+|+.+..+++..+...+|.++.|.|+|++|+..+...+..
T Consensus 23 ~~~~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e- 101 (172)
T KOG0028|consen 23 PKSELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGE- 101 (172)
T ss_pred CCccccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhc-
Confidence 4566888899999999999999999999999999999999999999999999999999999999999999998877766
Q ss_pred ccccCCCCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHH
Q 027734 124 RQEKGGAGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFD 203 (219)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~ 203 (219)
....+.++.+|+.+|.|++|.|+..+++.+.+.+| ++++++++.+++..+|.++||.|+-+
T Consensus 102 -----------------~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLg--enltD~El~eMIeEAd~d~dgevnee 162 (172)
T KOG0028|consen 102 -----------------RDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELG--ENLTDEELMEMIEEADRDGDGEVNEE 162 (172)
T ss_pred -----------------cCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhC--ccccHHHHHHHHHHhcccccccccHH
Confidence 46778999999999999999999999999999999 56799999999999999999999999
Q ss_pred HHHHHHHhC
Q 027734 204 EFRRMMKAG 212 (219)
Q Consensus 204 eF~~~l~~~ 212 (219)
||.+.++.-
T Consensus 163 EF~~imk~t 171 (172)
T KOG0028|consen 163 EFIRIMKKT 171 (172)
T ss_pred HHHHHHhcC
Confidence 999998753
No 5
>PTZ00184 calmodulin; Provisional
Probab=99.91 E-value=1.3e-22 Score=142.41 Aligned_cols=145 Identities=43% Similarity=0.704 Sum_probs=130.3
Q ss_pred cccHhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCccc
Q 027734 47 RTSAYKKAELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQE 126 (219)
Q Consensus 47 ~~~~~~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~ 126 (219)
.+++++...++..|..+|.+++|.|+.+||..++..++..+....+..++..+|.+++|.|+|++|+..+......
T Consensus 4 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~---- 79 (149)
T PTZ00184 4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKD---- 79 (149)
T ss_pred ccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccC----
Confidence 4677888999999999999999999999999999999888888999999999999999999999999988765433
Q ss_pred cCCCCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHH
Q 027734 127 KGGAGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFR 206 (219)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~ 206 (219)
......++.+|..+|.+++|.|+.+|++.++...+.+ .+.+++..++..+|.+++|.|+|+||+
T Consensus 80 --------------~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~--~~~~~~~~~~~~~d~~~~g~i~~~ef~ 143 (149)
T PTZ00184 80 --------------TDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEK--LTDEEVDEMIREADVDGDGQINYEEFV 143 (149)
T ss_pred --------------CcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCC--CCHHHHHHHHHhcCCCCCCcCcHHHHH
Confidence 2345678999999999999999999999999998854 588999999999999999999999999
Q ss_pred HHHHh
Q 027734 207 RMMKA 211 (219)
Q Consensus 207 ~~l~~ 211 (219)
.++..
T Consensus 144 ~~~~~ 148 (149)
T PTZ00184 144 KMMMS 148 (149)
T ss_pred HHHhc
Confidence 98754
No 6
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.85 E-value=1.3e-19 Score=121.20 Aligned_cols=143 Identities=26% Similarity=0.486 Sum_probs=132.6
Q ss_pred CcccHhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCcc
Q 027734 46 SRTSAYKKAELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQ 125 (219)
Q Consensus 46 ~~~~~~~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~ 125 (219)
...++.+++++++.|..+|.|+||.|..++|+..+.++|...+++++..++.. ..|-|+|.-|+.++...+..
T Consensus 24 amf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E----a~gPINft~FLTmfGekL~g--- 96 (171)
T KOG0031|consen 24 AMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKE----APGPINFTVFLTMFGEKLNG--- 96 (171)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh----CCCCeeHHHHHHHHHHHhcC---
Confidence 45778899999999999999999999999999999999999999999999975 46899999999999988877
Q ss_pred ccCCCCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHH
Q 027734 126 EKGGAGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEF 205 (219)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF 205 (219)
....+.+..+|+.||.+++|.|..+.++.+|-..| ..+++++++.+++.+-.+..|.++|.+|
T Consensus 97 ---------------tdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~g--Dr~~~eEV~~m~r~~p~d~~G~~dy~~~ 159 (171)
T KOG0031|consen 97 ---------------TDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMG--DRFTDEEVDEMYREAPIDKKGNFDYKAF 159 (171)
T ss_pred ---------------CCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhc--ccCCHHHHHHHHHhCCcccCCceeHHHH
Confidence 67788999999999999999999999999999988 4579999999999999999999999999
Q ss_pred HHHHHhC
Q 027734 206 RRMMKAG 212 (219)
Q Consensus 206 ~~~l~~~ 212 (219)
...+..+
T Consensus 160 ~~~ithG 166 (171)
T KOG0031|consen 160 TYIITHG 166 (171)
T ss_pred HHHHHcc
Confidence 9998854
No 7
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.83 E-value=2.5e-19 Score=117.91 Aligned_cols=145 Identities=25% Similarity=0.424 Sum_probs=128.6
Q ss_pred ccHhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCC--CCCcccHHHHHHHHHhhcCCCcc
Q 027734 48 TSAYKKAELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDAN--GDGLIEFDEFCMLYEGMMGGDRQ 125 (219)
Q Consensus 48 ~~~~~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~--~~g~i~~~eF~~~~~~~~~~~~~ 125 (219)
.++++..+++.+|..+|..+||.|+..++-.+++.+|.++++.++......++.+ +-.+|+|++|+.+++.+...
T Consensus 5 ~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vakn--- 81 (152)
T KOG0030|consen 5 FTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKN--- 81 (152)
T ss_pred cCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhc---
Confidence 4566778999999999999999999999999999999999999999999999877 45799999999999988655
Q ss_pred ccCCCCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHH
Q 027734 126 EKGGAGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEF 205 (219)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF 205 (219)
......+.+-+..+.||++++|.|...|+|++|-.+|- .+++++++.+++-. .|.+|.|+|+.|
T Consensus 82 -------------k~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGe--kl~eeEVe~Llag~-eD~nG~i~YE~f 145 (152)
T KOG0030|consen 82 -------------KDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGE--KLTEEEVEELLAGQ-EDSNGCINYEAF 145 (152)
T ss_pred -------------cccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHh--hccHHHHHHHHccc-cccCCcCcHHHH
Confidence 12455678888999999999999999999999999994 56999999999876 478999999999
Q ss_pred HHHHHh
Q 027734 206 RRMMKA 211 (219)
Q Consensus 206 ~~~l~~ 211 (219)
++-+..
T Consensus 146 Vk~i~~ 151 (152)
T KOG0030|consen 146 VKHIMS 151 (152)
T ss_pred HHHHhc
Confidence 987754
No 8
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.83 E-value=1.4e-19 Score=128.40 Aligned_cols=140 Identities=28% Similarity=0.425 Sum_probs=126.9
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcc-cCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCccccCCCC
Q 027734 53 KAELKRVFATFDKDGDGFITKTELVESLRNLRL-MVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKGGAG 131 (219)
Q Consensus 53 ~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~ 131 (219)
-..+-..|...|+++.|.|+.+|+..+|...+. +.+.+.++.++..+|.+.+|+|+++||..+|..+
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i------------ 123 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI------------ 123 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH------------
Confidence 447888999999999999999999999985544 6788999999999999999999999999999877
Q ss_pred CCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHh
Q 027734 132 DGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKA 211 (219)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 211 (219)
..++.+|+.+|.|++|.|+..|++++|..+|..+ +++-.+.+++.+|...+|.|.+++|++|+..
T Consensus 124 -------------~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~L--spq~~~~lv~kyd~~~~g~i~FD~FI~ccv~ 188 (221)
T KOG0037|consen 124 -------------NQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRL--SPQFYNLLVRKYDRFGGGRIDFDDFIQCCVV 188 (221)
T ss_pred -------------HHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCC--CHHHHHHHHHHhccccCCceeHHHHHHHHHH
Confidence 6679999999999999999999999999999765 9999999999999888999999999999988
Q ss_pred CCcccccC
Q 027734 212 GGVLLTAF 219 (219)
Q Consensus 212 ~~~~~~~~ 219 (219)
...+.++|
T Consensus 189 L~~lt~~F 196 (221)
T KOG0037|consen 189 LQRLTEAF 196 (221)
T ss_pred HHHHHHHH
Confidence 77665554
No 9
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.83 E-value=1.4e-19 Score=128.95 Aligned_cols=149 Identities=30% Similarity=0.510 Sum_probs=124.6
Q ss_pred CcccHhHHHHHHHHHHHhcCC-CCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCc-ccHHHHHHHHHhhcCCC
Q 027734 46 SRTSAYKKAELKRVFATFDKD-GDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGL-IEFDEFCMLYEGMMGGD 123 (219)
Q Consensus 46 ~~~~~~~~~~~~~~F~~~D~~-~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~-i~~~eF~~~~~~~~~~~ 123 (219)
...+..++..+...|..+|++ ++|.|+.+||..+... . ...-..+++..++.+++|. |++++|+..+......
T Consensus 25 ~~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~-~---~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~- 99 (187)
T KOG0034|consen 25 TQFSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPEL-A---LNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPK- 99 (187)
T ss_pred cccCHHHHHHHHHHHHHhccccccCccCHHHHHHHHHH-h---cCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCC-
Confidence 457788999999999999999 9999999999998833 2 2234566788888888888 9999999999988777
Q ss_pred ccccCCCCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCc--H----HHHHHHHHHHcCCCC
Q 027734 124 RQEKGGAGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNK--I----ENCKKMIRKVDVDGD 197 (219)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~--~----~~~~~~~~~~d~~~d 197 (219)
.....+++-+|+.||.+++|+|+.+|+.+++..+-.. +.+ + ..++.++..+|.++|
T Consensus 100 -----------------~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~-~~~~~~e~~~~i~d~t~~e~D~d~D 161 (187)
T KOG0034|consen 100 -----------------ASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGE-NDDMSDEQLEDIVDKTFEEADTDGD 161 (187)
T ss_pred -----------------ccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHcc-CCcchHHHHHHHHHHHHHHhCCCCC
Confidence 4555799999999999999999999999999987432 112 2 346778899999999
Q ss_pred CceeHHHHHHHHHhCCcccc
Q 027734 198 GMVNFDEFRRMMKAGGVLLT 217 (219)
Q Consensus 198 g~i~~~eF~~~l~~~~~~~~ 217 (219)
|+|+++||.+++.+.|.+.+
T Consensus 162 G~IsfeEf~~~v~~~P~~~~ 181 (187)
T KOG0034|consen 162 GKISFEEFCKVVEKQPDLLE 181 (187)
T ss_pred CcCcHHHHHHHHHcCccHHH
Confidence 99999999999999987654
No 10
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.81 E-value=3.9e-19 Score=126.75 Aligned_cols=147 Identities=30% Similarity=0.393 Sum_probs=121.4
Q ss_pred HHHHHHHHHHhcCC-CCCcccHHHHHHHHHhhcc-cCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCccccCCC
Q 027734 53 KAELKRVFATFDKD-GDGFITKTELVESLRNLRL-MVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKGGA 130 (219)
Q Consensus 53 ~~~~~~~F~~~D~~-~~g~is~~el~~~l~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~ 130 (219)
..+++.+++.+-.+ .+|.++.++|+.++..+.. .-+..-+..+|+.+|.|++|.|++.||+..+......
T Consensus 25 ~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rG-------- 96 (193)
T KOG0044|consen 25 KKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRG-------- 96 (193)
T ss_pred HHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCC--------
Confidence 34455555555444 4899999999999999875 4456678889999999999999999999999988777
Q ss_pred CCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHc----CC-----CCCCcHHHHHHHHHHHcCCCCCcee
Q 027734 131 GDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSAL----GL-----NEGNKIENCKKMIRKVDVDGDGMVN 201 (219)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~----~~-----~~~~~~~~~~~~~~~~d~~~dg~i~ 201 (219)
...+.++.+|+.||.|++|+|+++|+..++... +. ...-.++.+..+|+.+|.|+||.|+
T Consensus 97 -----------t~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT 165 (193)
T KOG0044|consen 97 -----------TLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLT 165 (193)
T ss_pred -----------cHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCccc
Confidence 667788899999999999999999998888764 32 1123456789999999999999999
Q ss_pred HHHHHHHHHhCCccccc
Q 027734 202 FDEFRRMMKAGGVLLTA 218 (219)
Q Consensus 202 ~~eF~~~l~~~~~~~~~ 218 (219)
++||...+...+.++.+
T Consensus 166 ~eef~~~~~~d~~i~~~ 182 (193)
T KOG0044|consen 166 LEEFIEGCKADPSILRA 182 (193)
T ss_pred HHHHHHHhhhCHHHHHH
Confidence 99999999998887765
No 11
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.78 E-value=1e-17 Score=129.10 Aligned_cols=141 Identities=23% Similarity=0.387 Sum_probs=129.8
Q ss_pred cccHhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhccc-CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCcc
Q 027734 47 RTSAYKKAELKRVFATFDKDGDGFITKTELVESLRNLRLM-VTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQ 125 (219)
Q Consensus 47 ~~~~~~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~ 125 (219)
...++...+++.+|+.+|.+++|.++..++...+..+..+ +.......+++..|.|.||+++|+||...+.
T Consensus 7 ~~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~-------- 78 (463)
T KOG0036|consen 7 ETDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLD-------- 78 (463)
T ss_pred CCcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHH--------
Confidence 4556677799999999999999999999999999998876 7788899999999999999999999999987
Q ss_pred ccCCCCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHH
Q 027734 126 EKGGAGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEF 205 (219)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF 205 (219)
..+..+.+.|+..|.++||.|+.+|+.+.|+.+|.+ ++++++..+++.+|+++++.|+++||
T Consensus 79 ----------------~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~--l~de~~~k~~e~~d~~g~~~I~~~e~ 140 (463)
T KOG0036|consen 79 ----------------NKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQ--LSDEKAAKFFEHMDKDGKATIDLEEW 140 (463)
T ss_pred ----------------HhHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCc--cCHHHHHHHHHHhccCCCeeeccHHH
Confidence 566778999999999999999999999999999976 59999999999999999999999999
Q ss_pred HHHHHhCC
Q 027734 206 RRMMKAGG 213 (219)
Q Consensus 206 ~~~l~~~~ 213 (219)
..++.-.|
T Consensus 141 rd~~ll~p 148 (463)
T KOG0036|consen 141 RDHLLLYP 148 (463)
T ss_pred HhhhhcCC
Confidence 99988776
No 12
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=7e-16 Score=115.83 Aligned_cols=160 Identities=23% Similarity=0.285 Sum_probs=126.4
Q ss_pred ccHhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCcccc
Q 027734 48 TSAYKKAELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEK 127 (219)
Q Consensus 48 ~~~~~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~ 127 (219)
...+....+..++..+|.+++|.|+..|++.|+..........+...-|..+|.|.||.|+|+|+...+..... .+...
T Consensus 71 ~~ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~-~~~~~ 149 (325)
T KOG4223|consen 71 TPEESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVD-LPDEF 149 (325)
T ss_pred CcchhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhccc-Ccccc
Confidence 44456678999999999999999999999999988777667788888999999999999999999987775432 11111
Q ss_pred CCCCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHH
Q 027734 128 GGAGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRR 207 (219)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~ 207 (219)
....... ........-++.|+..|.|++|.++++||..++....++ .+....+.+-+...|+|+||+|+++||+.
T Consensus 150 ~d~e~~~----~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p-~M~~iVi~Etl~d~Dkn~DG~I~~eEfig 224 (325)
T KOG4223|consen 150 PDEEDNE----EYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHP-HMKDIVIAETLEDIDKNGDGKISLEEFIG 224 (325)
T ss_pred ccchhcH----HHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcc-hHHHHHHHHHHhhcccCCCCceeHHHHHh
Confidence 1111111 112334456788999999999999999999999887754 57777899999999999999999999998
Q ss_pred HHHhCC
Q 027734 208 MMKAGG 213 (219)
Q Consensus 208 ~l~~~~ 213 (219)
-+....
T Consensus 225 d~~~~~ 230 (325)
T KOG4223|consen 225 DLYSHE 230 (325)
T ss_pred HHhhcc
Confidence 876554
No 13
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.67 E-value=2.6e-15 Score=107.24 Aligned_cols=149 Identities=20% Similarity=0.234 Sum_probs=120.6
Q ss_pred HHHhhccchHHHHHHHHHHhcccCCCCCCCc----------ccHhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhccc
Q 027734 17 INIFVYFPTKKFYAWIQSFFSKTATTTGESR----------TSAYKKAELKRVFATFDKDGDGFITKTELVESLRNLRLM 86 (219)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~ 86 (219)
+.....++.+.++.|+..+....+.+..... +..........+|+.+|.+++|.|+..||..++..+...
T Consensus 17 l~~~t~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rG 96 (193)
T KOG0044|consen 17 LVQQTKFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRG 96 (193)
T ss_pred HHHhcCCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCC
Confidence 3446778999999999999998877664421 223344456788999999999999999999999988888
Q ss_pred CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCccccCCCCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHH
Q 027734 87 VTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKGGAGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEE 166 (219)
Q Consensus 87 ~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e 166 (219)
..++.+...|+.||.|++|.|+++|++.++..++........ ..........+..+|+.+|.|+||.||.+|
T Consensus 97 t~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~--------~~~~~~~~~~v~~if~k~D~n~Dg~lT~ee 168 (193)
T KOG0044|consen 97 TLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKAL--------PEDEETPEERVDKIFSKMDKNKDGKLTLEE 168 (193)
T ss_pred cHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccC--------CcccccHHHHHHHHHHHcCCCCCCcccHHH
Confidence 888999999999999999999999999999988766443110 022346778899999999999999999999
Q ss_pred HHHHHHH
Q 027734 167 LGLVLSA 173 (219)
Q Consensus 167 ~~~~l~~ 173 (219)
|...+..
T Consensus 169 f~~~~~~ 175 (193)
T KOG0044|consen 169 FIEGCKA 175 (193)
T ss_pred HHHHhhh
Confidence 9888754
No 14
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1e-14 Score=109.60 Aligned_cols=138 Identities=25% Similarity=0.331 Sum_probs=111.0
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhhcc-cCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCccccCCCCC
Q 027734 54 AELKRVFATFDKDGDGFITKTELVESLRNLRL-MVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKGGAGD 132 (219)
Q Consensus 54 ~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~ 132 (219)
..-++.|+..|.|++|.+|.+||..++.--.. .+....+...+...|.|+||.|+++||+.-+..........
T Consensus 163 ~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~ep------ 236 (325)
T KOG4223|consen 163 ARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEP------ 236 (325)
T ss_pred HHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCc------
Confidence 34567899999999999999999998854322 34556688888999999999999999998877665421111
Q ss_pred CCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHH
Q 027734 133 GEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRR 207 (219)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~ 207 (219)
.+....-.+.+..+|+|+||+++.+|++..+..-+.. ..+.+++.++...|.|+||++|++|.+.
T Consensus 237 --------eWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d--~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 237 --------EWVLTEREQFFEFRDKNKDGKLDGDELLDWILPSEQD--HAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred --------ccccccHHHHHHHhhcCCCCccCHHHHhcccCCCCcc--HHHHHHHHHhhhhccCccccccHHHHhh
Confidence 2444555678889999999999999999888776644 3788999999999999999999999764
No 15
>PLN02964 phosphatidylserine decarboxylase
Probab=99.46 E-value=2.1e-12 Score=107.90 Aligned_cols=105 Identities=19% Similarity=0.279 Sum_probs=92.1
Q ss_pred CcccHhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhc-ccCCHHH---HHHHHHhhCCCCCCcccHHHHHHHHHhhcC
Q 027734 46 SRTSAYKKAELKRVFATFDKDGDGFITKTELVESLRNLR-LMVTDME---AEEMVAKVDANGDGLIEFDEFCMLYEGMMG 121 (219)
Q Consensus 46 ~~~~~~~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~-~~~~~~~---~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~ 121 (219)
...+..+.+++.+.|..+|++++|.+ +..++..++ ..+++.+ ++.++..+|.+++|.|+++||+.++....
T Consensus 135 t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg- 209 (644)
T PLN02964 135 FDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFG- 209 (644)
T ss_pred hhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhc-
Confidence 35677788999999999999999997 888888898 4777776 79999999999999999999999998542
Q ss_pred CCccccCCCCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHH
Q 027734 122 GDRQEKGGAGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSA 173 (219)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~ 173 (219)
. ....+.++.+|+.+|.|++|+|+.+|+++++..
T Consensus 210 ~------------------~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 210 N------------------LVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred c------------------CCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 2 245678999999999999999999999999988
No 16
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.43 E-value=4.6e-12 Score=88.88 Aligned_cols=108 Identities=27% Similarity=0.439 Sum_probs=94.7
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCccccCCCCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHH
Q 027734 89 DMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKGGAGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELG 168 (219)
Q Consensus 89 ~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~ 168 (219)
..++..+|..+|.+++|.|+..|+...+..+-.. .....+..++..+|.+++|.|+.+||.
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~-------------------~t~~el~~~~~~~D~dg~g~I~~~eF~ 67 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQN-------------------PTEEELRDLIKEIDLDGDGTIDFEEFL 67 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCC-------------------CCHHHHHHHHHHhCCCCCCeEcHHHHH
Confidence 4567889999999999999999999999887555 777899999999999999999999999
Q ss_pred HHHHHcCCCCCC---cHHHHHHHHHHHcCCCCCceeHHHHHHHHHhCCcc
Q 027734 169 LVLSALGLNEGN---KIENCKKMIRKVDVDGDGMVNFDEFRRMMKAGGVL 215 (219)
Q Consensus 169 ~~l~~~~~~~~~---~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~~ 215 (219)
.++......... +.+++.+.|+.+|.|++|.|+..|+.+.+...+.-
T Consensus 68 ~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~ 117 (151)
T KOG0027|consen 68 DLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEK 117 (151)
T ss_pred HHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCc
Confidence 999987654322 35699999999999999999999999999887653
No 17
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.41 E-value=1.4e-12 Score=78.29 Aligned_cols=64 Identities=47% Similarity=0.710 Sum_probs=54.7
Q ss_pred hHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCC--CCcHHHHHHHHHHHcCCCCCceeHHHHHHHH
Q 027734 146 DLKDAFDVFDKDKDGLISVEELGLVLSALGLNE--GNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 209 (219)
Q Consensus 146 ~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~--~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l 209 (219)
.++++|+.+|++++|+|+.+|++.++..++.+. ....+.+..+++.+|.|+||.|+++||.+++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 368899999999999999999999999998543 1233456667999999999999999999875
No 18
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.40 E-value=2.3e-12 Score=85.94 Aligned_cols=108 Identities=28% Similarity=0.500 Sum_probs=91.1
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHhhcCCCccccCCCCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHH
Q 027734 93 EEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKGGAGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLS 172 (219)
Q Consensus 93 ~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~ 172 (219)
+++...+..++.|.+++++|+..+...... .+..-.+.-+|+.||-|++++|..+++...+.
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~------------------APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~ 135 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEM------------------APRDLKAKYAFKIYDFDGDEFIGHDDLEKTLT 135 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhh------------------ChHHhhhhheeEEeecCCCCcccHHHHHHHHH
Confidence 345566778999999999999999887665 45666778899999999999999999999998
Q ss_pred HcCCCCCCcHHH----HHHHHHHHcCCCCCceeHHHHHHHHHhCCcccccC
Q 027734 173 ALGLNEGNKIEN----CKKMIRKVDVDGDGMVNFDEFRRMMKAGGVLLTAF 219 (219)
Q Consensus 173 ~~~~~~~~~~~~----~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~~~~~~ 219 (219)
.+... .+++++ ++.++...|.|+||++++.||...+.+.|..+.-|
T Consensus 136 ~lTr~-eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~raPDFlsTF 185 (189)
T KOG0038|consen 136 SLTRD-ELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILRAPDFLSTF 185 (189)
T ss_pred HHhhc-cCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhCcchHhhh
Confidence 88654 366666 56678889999999999999999999999887654
No 19
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.38 E-value=3.2e-12 Score=76.74 Aligned_cols=62 Identities=42% Similarity=0.738 Sum_probs=54.2
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhhcccCCHH----HHHHHHHhhCCCCCCcccHHHHHHHH
Q 027734 55 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDM----EAEEMVAKVDANGDGLIEFDEFCMLY 116 (219)
Q Consensus 55 ~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~~----~~~~~~~~~d~~~~g~i~~~eF~~~~ 116 (219)
.++++|+.+|.+++|+|+.+|++.++..++...+.. .+..+++.+|.|+||.|+++||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 378899999999999999999999999998765544 45566999999999999999999764
No 20
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.38 E-value=3.6e-12 Score=80.33 Aligned_cols=69 Identities=26% Similarity=0.338 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHhcC-CCCCcccHHHHHHHHHh-hcccCCH-HHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 027734 51 YKKAELKRVFATFDK-DGDGFITKTELVESLRN-LRLMVTD-MEAEEMVAKVDANGDGLIEFDEFCMLYEGM 119 (219)
Q Consensus 51 ~~~~~~~~~F~~~D~-~~~g~is~~el~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 119 (219)
..+..+..+|+.+|+ +++|+|+..||+.++.. ++..++. .++..+++.+|.|+||.|+|+||+.++..+
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 456789999999999 99999999999999999 8877777 899999999999999999999999988765
No 21
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.38 E-value=3.3e-11 Score=83.45 Aligned_cols=137 Identities=17% Similarity=0.228 Sum_probs=106.3
Q ss_pred HHHhhccchHHHHHHHHHHhcccC--CCCCC---------CcccHhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhc-
Q 027734 17 INIFVYFPTKKFYAWIQSFFSKTA--TTTGE---------SRTSAYKKAELKRVFATFDKDGDGFITKTELVESLRNLR- 84 (219)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---------~~~~~~~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~- 84 (219)
+..+..++..+.+.|.+.+..-.+ .+... ..........+.++|..+|. +.|.|++.+|..++....
T Consensus 8 ~~~~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~ 86 (160)
T COG5126 8 LLTFTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLK 86 (160)
T ss_pred hhhcccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhc
Confidence 445666777777777776654443 22211 00112234567788999998 999999999999997754
Q ss_pred ccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCccccCCCCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccH
Q 027734 85 LMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKGGAGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISV 164 (219)
Q Consensus 85 ~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~ 164 (219)
...+.+++...|+.||.|++|.|+..++..++...-. ....+.+...++.+|.+++|.|+.
T Consensus 87 ~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge-------------------~~~deev~~ll~~~d~d~dG~i~~ 147 (160)
T COG5126 87 RGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGE-------------------RLSDEEVEKLLKEYDEDGDGEIDY 147 (160)
T ss_pred cCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcc-------------------cCCHHHHHHHHHhcCCCCCceEeH
Confidence 5667899999999999999999999999999985533 377789999999999999999999
Q ss_pred HHHHHHHHH
Q 027734 165 EELGLVLSA 173 (219)
Q Consensus 165 ~e~~~~l~~ 173 (219)
++|.+.+..
T Consensus 148 ~eF~~~~~~ 156 (160)
T COG5126 148 EEFKKLIKD 156 (160)
T ss_pred HHHHHHHhc
Confidence 999987743
No 22
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.36 E-value=4e-12 Score=80.14 Aligned_cols=67 Identities=19% Similarity=0.264 Sum_probs=59.7
Q ss_pred HhhHHHHHhhhcC-CCCCcccHHHHHHHHHH-cCCCCCCcH-HHHHHHHHHHcCCCCCceeHHHHHHHHHhC
Q 027734 144 GDDLKDAFDVFDK-DKDGLISVEELGLVLSA-LGLNEGNKI-ENCKKMIRKVDVDGDGMVNFDEFRRMMKAG 212 (219)
Q Consensus 144 ~~~~~~~F~~~D~-~~~G~I~~~e~~~~l~~-~~~~~~~~~-~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~ 212 (219)
...+..+|+.||. +++|+|+.+|++.++.. +|.. ++. ++++.+++.+|.|+||+|+|+||+..+...
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~--ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHL--LKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhh--ccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 4578899999999 99999999999999998 7743 466 899999999999999999999999988653
No 23
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.35 E-value=6.3e-11 Score=84.80 Aligned_cols=139 Identities=22% Similarity=0.322 Sum_probs=109.5
Q ss_pred cchHHHHHHHHHHhcccCCCCCCCcccHhHHHHH---------HHHHHHhcCCCCCc-ccHHHHHHHHHhhcccCCHH-H
Q 027734 23 FPTKKFYAWIQSFFSKTATTTGESRTSAYKKAEL---------KRVFATFDKDGDGF-ITKTELVESLRNLRLMVTDM-E 91 (219)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~F~~~D~~~~g~-is~~el~~~l~~~~~~~~~~-~ 91 (219)
++.+++...+..+.+-...+ ..+.++.++...+ .+++..++.+++|. |++++|...+.....+.... .
T Consensus 27 fs~~EI~~L~~rF~kl~~~~-~~g~lt~eef~~i~~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~K 105 (187)
T KOG0034|consen 27 FSANEIERLYERFKKLDRNN-GDGYLTKEEFLSIPELALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREK 105 (187)
T ss_pred cCHHHHHHHHHHHHHhcccc-ccCccCHHHHHHHHHHhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHH
Confidence 66777777777777666654 4455555555433 47889999998888 99999999998877665555 8
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCccccCCCCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHH
Q 027734 92 AEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKGGAGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVL 171 (219)
Q Consensus 92 ~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l 171 (219)
++..|+.||.+++|.|+.+|+...+.......... ........+...|..+|.++||.|+.+|+++++
T Consensus 106 l~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~------------~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v 173 (187)
T KOG0034|consen 106 LRFAFRVYDLDGDGFISREELKQILRMMVGENDDM------------SDEQLEDIVDKTFEEADTDGDGKISFEEFCKVV 173 (187)
T ss_pred HHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcc------------hHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 99999999999999999999999999887653221 013456678889999999999999999999998
Q ss_pred HHc
Q 027734 172 SAL 174 (219)
Q Consensus 172 ~~~ 174 (219)
...
T Consensus 174 ~~~ 176 (187)
T KOG0034|consen 174 EKQ 176 (187)
T ss_pred HcC
Confidence 654
No 24
>PTZ00183 centrin; Provisional
Probab=99.34 E-value=3.9e-11 Score=84.77 Aligned_cols=104 Identities=24% Similarity=0.299 Sum_probs=85.9
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCccccCCCCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHH
Q 027734 90 MEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKGGAGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGL 169 (219)
Q Consensus 90 ~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~ 169 (219)
.++..+|..+|.+++|.|++.||..++...-.. .....+..+|..+|.+++|.|+.+||..
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~-------------------~~~~~~~~l~~~~d~~~~g~i~~~eF~~ 77 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSLGFE-------------------PKKEEIKQMIADVDKDGSGKIDFEEFLD 77 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCC-------------------CCHHHHHHHHHHhCCCCCCcEeHHHHHH
Confidence 456778999999999999999999988754211 3446789999999999999999999999
Q ss_pred HHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHhCC
Q 027734 170 VLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKAGG 213 (219)
Q Consensus 170 ~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~ 213 (219)
++..... .....+.+..+|+.+|.+++|.|+.+||..++...+
T Consensus 78 ~~~~~~~-~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~ 120 (158)
T PTZ00183 78 IMTKKLG-ERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELG 120 (158)
T ss_pred HHHHHhc-CCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhC
Confidence 8865421 123667899999999999999999999999998654
No 25
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.31 E-value=2.1e-11 Score=87.19 Aligned_cols=88 Identities=30% Similarity=0.452 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCccccCCCC
Q 027734 52 KKAELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKGGAG 131 (219)
Q Consensus 52 ~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~ 131 (219)
.+..|+.+|+.+|+|++|.|+..||+.+|..+|..++.+..+.++++||...+|.|.|++|++.+..+
T Consensus 122 ~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L------------ 189 (221)
T KOG0037|consen 122 YINQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL------------ 189 (221)
T ss_pred HHHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH------------
Confidence 35678999999999999999999999999999999999999999999998889999999999999766
Q ss_pred CCCCCCCCCCChHhhHHHHHhhhcCCCCCcccH
Q 027734 132 DGEGGGGGGADEGDDLKDAFDVFDKDKDGLISV 164 (219)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~ 164 (219)
..+-++|+.+|++..|.|+.
T Consensus 190 -------------~~lt~~Fr~~D~~q~G~i~~ 209 (221)
T KOG0037|consen 190 -------------QRLTEAFRRRDTAQQGSITI 209 (221)
T ss_pred -------------HHHHHHHHHhccccceeEEE
Confidence 56688999999999998654
No 26
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.30 E-value=3.4e-11 Score=76.04 Aligned_cols=69 Identities=26% Similarity=0.466 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHhc-CCCCC-cccHHHHHHHHHh-----hcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 027734 51 YKKAELKRVFATFD-KDGDG-FITKTELVESLRN-----LRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGM 119 (219)
Q Consensus 51 ~~~~~~~~~F~~~D-~~~~g-~is~~el~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 119 (219)
..+..+.++|+.+| ++++| .|+..||+.++.. ++...++.++..+++.+|.|++|.|+|+||+.++...
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 34568999999998 79999 5999999999998 8888899999999999999999999999999888755
No 27
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.28 E-value=2.8e-11 Score=76.43 Aligned_cols=67 Identities=25% Similarity=0.391 Sum_probs=59.8
Q ss_pred HhhHHHHHhhhc-CCCCC-cccHHHHHHHHHH-----cCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHhC
Q 027734 144 GDDLKDAFDVFD-KDKDG-LISVEELGLVLSA-----LGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKAG 212 (219)
Q Consensus 144 ~~~~~~~F~~~D-~~~~G-~I~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~ 212 (219)
...++.+|+.|| .+++| .|+.+|++.++.. +|.. .++++++.+++.+|.|++|+|+|+||+.++...
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~--~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEI--KEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCC--CCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 457889999998 79999 5999999999998 7754 488899999999999999999999999988754
No 28
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.28 E-value=1e-10 Score=91.58 Aligned_cols=149 Identities=17% Similarity=0.275 Sum_probs=106.4
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhh-cccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCccccCCCCC
Q 027734 54 AELKRVFATFDKDGDGFITKTELVESLRNL-RLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKGGAGD 132 (219)
Q Consensus 54 ~~~~~~F~~~D~~~~g~is~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~ 132 (219)
..+.+-|+.+|...+|+|+..++...+..+ +.+++=.-+. -+....+.||.+.|.+-...+..-..... .
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~--~kla~~s~d~~v~Y~~~~~~l~~e~~~~e-------a 534 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLR--PKLANGSDDGKVEYKSTLDNLDTEVILEE-------A 534 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhh--hhccCCCcCcceehHhHHHHhhhhhHHHH-------H
Confidence 467788999999999999999999998774 3343322111 22345566889988887765542211100 0
Q ss_pred CCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCC--CCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHH
Q 027734 133 GEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGL--NEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMK 210 (219)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~--~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~ 210 (219)
..............+..+|+.+|.|++|.||.+||+++++.++. +...++.++.++-+.+|-|+||+|++.||+++++
T Consensus 535 ~~slvetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 535 GSSLVETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred HhHHHHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 00000001233456788999999999999999999999987743 3446889999999999999999999999999886
Q ss_pred h
Q 027734 211 A 211 (219)
Q Consensus 211 ~ 211 (219)
-
T Consensus 615 l 615 (631)
T KOG0377|consen 615 L 615 (631)
T ss_pred h
Confidence 3
No 29
>PTZ00184 calmodulin; Provisional
Probab=99.27 E-value=1.8e-10 Score=80.52 Aligned_cols=104 Identities=24% Similarity=0.374 Sum_probs=85.0
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCccccCCCCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHH
Q 027734 90 MEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKGGAGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGL 169 (219)
Q Consensus 90 ~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~ 169 (219)
..+...|..+|.+++|.|+++||..++...... ...+.+..+|..+|.+++|.|+.++|..
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~-------------------~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 71 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQN-------------------PTEAELQDMINEVDADGNGTIDFPEFLT 71 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCC-------------------CCHHHHHHHHHhcCcCCCCcCcHHHHHH
Confidence 345668888999999999999999988654222 3356789999999999999999999999
Q ss_pred HHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHhCC
Q 027734 170 VLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKAGG 213 (219)
Q Consensus 170 ~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~ 213 (219)
++...... ......+..+|+.+|.+++|.|+.++|..++...+
T Consensus 72 ~l~~~~~~-~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~ 114 (149)
T PTZ00184 72 LMARKMKD-TDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLG 114 (149)
T ss_pred HHHHhccC-CcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHC
Confidence 98764321 23556789999999999999999999999987643
No 30
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.25 E-value=7.4e-11 Score=76.19 Aligned_cols=74 Identities=22% Similarity=0.310 Sum_probs=66.5
Q ss_pred cccHhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCC
Q 027734 47 RTSAYKKAELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGG 122 (219)
Q Consensus 47 ~~~~~~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~ 122 (219)
.+++++...++.+|..+|.+++|.|+.+|++.++...+ .+..++..++..+|.+++|.|+++||+.++......
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~ 76 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRK 76 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999998865 578899999999999999999999999988766544
No 31
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.17 E-value=8e-11 Score=75.70 Aligned_cols=70 Identities=23% Similarity=0.356 Sum_probs=60.2
Q ss_pred HhhHHHHHhhhcC-CC-CCcccHHHHHHHHHH-----cCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHhCCcc
Q 027734 144 GDDLKDAFDVFDK-DK-DGLISVEELGLVLSA-----LGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKAGGVL 215 (219)
Q Consensus 144 ~~~~~~~F~~~D~-~~-~G~I~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~~ 215 (219)
...+..+|..+|. ++ +|.|+.+|++.++.. +|. ..++++++.+++.+|.+++|.|+|+||+..+.....+
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~--~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~~ 83 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKN--QKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSIA 83 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhc--cccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 4678899999997 87 699999999999986 343 3488899999999999999999999999998876543
No 32
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.17 E-value=3.4e-10 Score=71.50 Aligned_cols=70 Identities=20% Similarity=0.401 Sum_probs=61.9
Q ss_pred HhHHHHHHHHHHHhcC-CC-CCcccHHHHHHHHHh---hcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 027734 50 AYKKAELKRVFATFDK-DG-DGFITKTELVESLRN---LRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGM 119 (219)
Q Consensus 50 ~~~~~~~~~~F~~~D~-~~-~g~is~~el~~~l~~---~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 119 (219)
++.+..+-.+|..+|. ++ +|+|+.+||+.++.+ ++...+..++..+++.+|.|++|+|+|+||+.++..+
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 3456678899999998 66 899999999999973 6888899999999999999999999999999888755
No 33
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.17 E-value=2.1e-10 Score=73.46 Aligned_cols=69 Identities=25% Similarity=0.288 Sum_probs=57.2
Q ss_pred HhhHHHHHhhhc-CCCCC-cccHHHHHHHHHHc-CC--CCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHhC
Q 027734 144 GDDLKDAFDVFD-KDKDG-LISVEELGLVLSAL-GL--NEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKAG 212 (219)
Q Consensus 144 ~~~~~~~F~~~D-~~~~G-~I~~~e~~~~l~~~-~~--~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~ 212 (219)
...+.++|+.|| .+++| .|+.+|++.++... +. ....++.++..+++.+|.|+||.|+|+||+.++.+.
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 456788899999 78998 59999999999763 21 112377899999999999999999999999998764
No 34
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.17 E-value=3.6e-10 Score=72.32 Aligned_cols=69 Identities=28% Similarity=0.463 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHhc-CCCCC-cccHHHHHHHHHhh-----cccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 027734 51 YKKAELKRVFATFD-KDGDG-FITKTELVESLRNL-----RLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGM 119 (219)
Q Consensus 51 ~~~~~~~~~F~~~D-~~~~g-~is~~el~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 119 (219)
.-+..+.++|..+| .+++| .||..||+.++... ....+..++..+++.+|.|++|.|+|+||+.++..+
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 34567889999999 78998 59999999999763 334477899999999999999999999999988765
No 35
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.16 E-value=2.6e-10 Score=72.01 Aligned_cols=67 Identities=21% Similarity=0.293 Sum_probs=58.0
Q ss_pred HhhHHHHHhhhcC-CC-CCcccHHHHHHHHHH---cCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHhC
Q 027734 144 GDDLKDAFDVFDK-DK-DGLISVEELGLVLSA---LGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKAG 212 (219)
Q Consensus 144 ~~~~~~~F~~~D~-~~-~G~I~~~e~~~~l~~---~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~ 212 (219)
...+-.+|..||. ++ +|+|+.+|++.++.. +|.+ ++++++..+++.+|.|++|+|+|+||+.++...
T Consensus 9 ~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k--~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 9 IGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSK--LQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 3566789999998 67 899999999999974 5644 599999999999999999999999999988653
No 36
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.16 E-value=2e-10 Score=65.90 Aligned_cols=53 Identities=43% Similarity=0.735 Sum_probs=47.9
Q ss_pred CCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHh
Q 027734 158 KDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKA 211 (219)
Q Consensus 158 ~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 211 (219)
++|.|+.++|+.++..+|... ++++++..+|..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~-~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKD-LSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSS-SCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCC-CCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 479999999999998888651 59999999999999999999999999999864
No 37
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.15 E-value=3e-10 Score=72.71 Aligned_cols=71 Identities=28% Similarity=0.424 Sum_probs=59.9
Q ss_pred HhhHHHHHhhhc-CCCCC-cccHHHHHHHHHH-cCCC--CCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHhCCc
Q 027734 144 GDDLKDAFDVFD-KDKDG-LISVEELGLVLSA-LGLN--EGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKAGGV 214 (219)
Q Consensus 144 ~~~~~~~F~~~D-~~~~G-~I~~~e~~~~l~~-~~~~--~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~ 214 (219)
.+.++++|+.+| .+++| .|+..|++.++.. +|.. ...++++++.+++.+|.+++|.|+|++|+.++.+..+
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~ 83 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTV 83 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHH
Confidence 467899999997 99999 5999999999985 5421 1347889999999999999999999999998876443
No 38
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.14 E-value=5.3e-10 Score=71.61 Aligned_cols=68 Identities=29% Similarity=0.524 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhc-CCCCC-cccHHHHHHHHHh-hc----ccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 027734 52 KKAELKRVFATFD-KDGDG-FITKTELVESLRN-LR----LMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGM 119 (219)
Q Consensus 52 ~~~~~~~~F~~~D-~~~~g-~is~~el~~~l~~-~~----~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 119 (219)
-...++++|..+| .+++| .|+..|++.++.. ++ ..++..++..++..+|.+++|.|+|+||+.++..+
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 3467999999997 99999 4999999999975 44 34688999999999999999999999999888755
No 39
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.14 E-value=4.6e-10 Score=72.14 Aligned_cols=68 Identities=25% Similarity=0.492 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhcC-CC-CCcccHHHHHHHHHh-----hcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 027734 52 KKAELKRVFATFDK-DG-DGFITKTELVESLRN-----LRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGM 119 (219)
Q Consensus 52 ~~~~~~~~F~~~D~-~~-~g~is~~el~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 119 (219)
....+..+|..+|. ++ +|.|+..|++.++.. ++..++..++..++..+|.+++|.|+|+||+.++...
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 35678999999997 87 699999999999986 4667789999999999999999999999999887644
No 40
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.13 E-value=3e-10 Score=68.27 Aligned_cols=62 Identities=31% Similarity=0.377 Sum_probs=56.0
Q ss_pred HHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHhCC
Q 027734 148 KDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKAGG 213 (219)
Q Consensus 148 ~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~ 213 (219)
+.+|..+|.+++|.|+.+|++.++...|. +.+++..++..+|.+++|.|+++||+..+...+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~----~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL----PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC----CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 57899999999999999999999998873 677899999999999999999999999886544
No 41
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.13 E-value=5e-10 Score=71.14 Aligned_cols=70 Identities=23% Similarity=0.387 Sum_probs=61.4
Q ss_pred HhHHHHHHHHHHHhcC--CCCCcccHHHHHHHHHh-hccc----CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 027734 50 AYKKAELKRVFATFDK--DGDGFITKTELVESLRN-LRLM----VTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGM 119 (219)
Q Consensus 50 ~~~~~~~~~~F~~~D~--~~~g~is~~el~~~l~~-~~~~----~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 119 (219)
++++..++.+|..+|+ +++|.|+..|+..++.. ++.. .+..++..++..+|.+++|.|+|++|+.++...
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 4677889999999999 89999999999999976 4543 358999999999999999999999999988755
No 42
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.11 E-value=4.6e-10 Score=67.45 Aligned_cols=61 Identities=25% Similarity=0.415 Sum_probs=55.8
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 027734 57 KRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGM 119 (219)
Q Consensus 57 ~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 119 (219)
+++|..+|++++|.|+.+|+..++..++. +..++..++..+|.+++|.|+|+||+..+...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 56899999999999999999999998764 88899999999999999999999999988755
No 43
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.10 E-value=5.7e-10 Score=72.02 Aligned_cols=66 Identities=24% Similarity=0.369 Sum_probs=59.6
Q ss_pred ChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHh
Q 027734 142 DEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKA 211 (219)
Q Consensus 142 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 211 (219)
.....++.+|..+|.+++|.|+.+|++.+++..+ ++.+++..++..+|.+++|.|+++||+.++..
T Consensus 7 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~----~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 7 EDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG----LPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC----CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 4567889999999999999999999999999876 37789999999999999999999999987764
No 44
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.09 E-value=5.5e-10 Score=64.07 Aligned_cols=52 Identities=33% Similarity=0.624 Sum_probs=48.6
Q ss_pred CCCcccHHHHHHHHHhhccc-CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q 027734 67 GDGFITKTELVESLRNLRLM-VTDMEAEEMVAKVDANGDGLIEFDEFCMLYEG 118 (219)
Q Consensus 67 ~~g~is~~el~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 118 (219)
.+|.|+.++|+.++..++.. +++.++..++..+|.+++|.|+|+||+..+..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999888998 99999999999999999999999999998763
No 45
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.07 E-value=8.9e-10 Score=72.94 Aligned_cols=66 Identities=24% Similarity=0.306 Sum_probs=56.7
Q ss_pred ChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHhCC
Q 027734 142 DEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKAGG 213 (219)
Q Consensus 142 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~ 213 (219)
.....+..+|..+|.|++|.|+.+|+..+. ++ ..+..+..+|..+|.|+||.||++||..++.+..
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~----~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~~~ 110 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR--LD----PNEHCIKPFFESCDLDKDGSISLDEWCYCFIKED 110 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--cc----chHHHHHHHHHHHCCCCCCCCCHHHHHHHHhChh
Confidence 455778999999999999999999999876 22 2567889999999999999999999999995443
No 46
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.06 E-value=2.5e-09 Score=70.82 Aligned_cols=67 Identities=22% Similarity=0.336 Sum_probs=58.1
Q ss_pred cccHhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 027734 47 RTSAYKKAELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYE 117 (219)
Q Consensus 47 ~~~~~~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 117 (219)
...+..+..+.-.|..+|.|+||.|+.+|+..+. .......+..++..+|.|+||.||++||...+.
T Consensus 41 ~~~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 41 SLYPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred hhhHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 3456777889999999999999999999999876 334567788999999999999999999999883
No 47
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.05 E-value=1.5e-09 Score=63.79 Aligned_cols=61 Identities=49% Similarity=0.813 Sum_probs=56.0
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHH
Q 027734 147 LKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 209 (219)
Q Consensus 147 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l 209 (219)
++.+|..+|.+++|.|+.+|++.++..++.+ .+.+.+..++..+|.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEG--LSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCC--CCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999855 488899999999999999999999999875
No 48
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.04 E-value=2.6e-09 Score=67.53 Aligned_cols=70 Identities=30% Similarity=0.422 Sum_probs=59.3
Q ss_pred HhHHHHHHHHHHH-hcCCCCC-cccHHHHHHHHHhh-----cccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 027734 50 AYKKAELKRVFAT-FDKDGDG-FITKTELVESLRNL-----RLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGM 119 (219)
Q Consensus 50 ~~~~~~~~~~F~~-~D~~~~g-~is~~el~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 119 (219)
+..+..+..+|.. .|++++| .||.+||+.++... +....+.++..+++.+|.|+||.|+|+||+.++..+
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 3456788999999 7788876 99999999999875 334567899999999999999999999999888755
No 49
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.04 E-value=6.2e-10 Score=70.72 Aligned_cols=72 Identities=24% Similarity=0.371 Sum_probs=60.8
Q ss_pred ChHhhHHHHHhhhcC--CCCCcccHHHHHHHHHH-cCCC--CCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHhCC
Q 027734 142 DEGDDLKDAFDVFDK--DKDGLISVEELGLVLSA-LGLN--EGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKAGG 213 (219)
Q Consensus 142 ~~~~~~~~~F~~~D~--~~~G~I~~~e~~~~l~~-~~~~--~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~ 213 (219)
.....++.+|..+|. +++|.|+.+|++.++.. +|.+ ...+..++..++..+|.+++|.|+|++|+.++....
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 345678899999999 89999999999999976 4532 123588999999999999999999999999887653
No 50
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.04 E-value=6.1e-09 Score=70.93 Aligned_cols=103 Identities=22% Similarity=0.289 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHh-hcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCccccCCC
Q 027734 52 KKAELKRVFATFDKDGDGFITKTELVESLRN-LRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKGGA 130 (219)
Q Consensus 52 ~~~~~~~~F~~~D~~~~g~is~~el~~~l~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~ 130 (219)
...++.++...+|+++.|.|++++|+..+.. ++..-+.+++...|+.+|.+++|.||+.+|+.+...+...
T Consensus 67 ~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgen-------- 138 (172)
T KOG0028|consen 67 KKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGEN-------- 138 (172)
T ss_pred chHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCcc--------
Confidence 3456777888999999999999999999754 6666799999999999999999999999999988877544
Q ss_pred CCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHH
Q 027734 131 GDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSA 173 (219)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~ 173 (219)
...+.++.....+|.+++|-|..+||.++++.
T Consensus 139 -----------ltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 139 -----------LTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred -----------ccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 56678899999999999999999999888764
No 51
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=99.03 E-value=2.3e-09 Score=78.10 Aligned_cols=67 Identities=21% Similarity=0.341 Sum_probs=53.3
Q ss_pred HhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcc---cCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 027734 50 AYKKAELKRVFATFDKDGDGFITKTELVESLRNLRL---MVTDMEAEEMVAKVDANGDGLIEFDEFCMLY 116 (219)
Q Consensus 50 ~~~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~---~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 116 (219)
......++.+|...|.|-||.||..|+++++..-.- .-...+....|+..|+|+||.|+|+||.-.+
T Consensus 97 rrsrrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkF 166 (362)
T KOG4251|consen 97 RRSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKF 166 (362)
T ss_pred hHHHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHH
Confidence 355678999999999999999999999999865321 1233456667889999999999999996444
No 52
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.01 E-value=2.8e-09 Score=67.40 Aligned_cols=70 Identities=21% Similarity=0.301 Sum_probs=57.4
Q ss_pred hHhhHHHHHhh-hcCCCCC-cccHHHHHHHHHHcCC---CCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHhC
Q 027734 143 EGDDLKDAFDV-FDKDKDG-LISVEELGLVLSALGL---NEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKAG 212 (219)
Q Consensus 143 ~~~~~~~~F~~-~D~~~~G-~I~~~e~~~~l~~~~~---~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~ 212 (219)
....+..+|+. .|.+++| .|+.+||+.++..... ....++.++..+++.+|.|+||.|+|+||+.++...
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 34567889999 6787876 9999999999988631 112366899999999999999999999999988653
No 53
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=99.01 E-value=1.1e-08 Score=80.98 Aligned_cols=130 Identities=17% Similarity=0.291 Sum_probs=101.6
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHh----hCCCCCCcccHHHHHHHHHhhcCCCccccCCCCC
Q 027734 57 KRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAK----VDANGDGLIEFDEFCMLYEGMMGGDRQEKGGAGD 132 (219)
Q Consensus 57 ~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~----~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~ 132 (219)
..-|..+|+++||.|+.++++..-.. .++..-++++|.+ .-.-.+|+++|++|+.++......
T Consensus 281 y~kFweLD~Dhd~lidk~~L~ry~d~---tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k---------- 347 (493)
T KOG2562|consen 281 YCKFWELDTDHDGLIDKEDLKRYGDH---TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDK---------- 347 (493)
T ss_pred HHHHhhhccccccccCHHHHHHHhcc---chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccC----------
Confidence 34488999999999999999986543 2457788889983 334468999999999999877555
Q ss_pred CCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHH-------cCCCCCCcHHHHHHHHHHHcCCCCCceeHHHH
Q 027734 133 GEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSA-------LGLNEGNKIENCKKMIRKVDVDGDGMVNFDEF 205 (219)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~-------~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF 205 (219)
...+.+.-.|+.+|.+++|.|+..|++.+... .+.....-+..+.+++....+...++|++.+|
T Consensus 348 ---------~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDl 418 (493)
T KOG2562|consen 348 ---------DTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDL 418 (493)
T ss_pred ---------CCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHH
Confidence 55677888999999999999999999877654 34333234455677788887788999999999
Q ss_pred HHH
Q 027734 206 RRM 208 (219)
Q Consensus 206 ~~~ 208 (219)
..+
T Consensus 419 k~s 421 (493)
T KOG2562|consen 419 KGS 421 (493)
T ss_pred hhc
Confidence 883
No 54
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.01 E-value=3e-09 Score=62.46 Aligned_cols=61 Identities=44% Similarity=0.755 Sum_probs=57.1
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 027734 56 LKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLY 116 (219)
Q Consensus 56 ~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 116 (219)
+..+|..+|.+++|.|+.+|+..++..++.+.+...+..++..+|.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999999998764
No 55
>PLN02964 phosphatidylserine decarboxylase
Probab=98.98 E-value=8e-09 Score=86.83 Aligned_cols=121 Identities=19% Similarity=0.273 Sum_probs=88.0
Q ss_pred CcccHHHHHHHHHh--hcc-cCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCccccCCCCCCCCCCCCCCChH-
Q 027734 69 GFITKTELVESLRN--LRL-MVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKGGAGDGEGGGGGGADEG- 144 (219)
Q Consensus 69 g~is~~el~~~l~~--~~~-~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 144 (219)
..++..++...... ... .-...++.+.|..+|.|++|.+ +...+...-... ....
T Consensus 119 ~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~-----------------pte~e 177 (644)
T PLN02964 119 NRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIED-----------------PVETE 177 (644)
T ss_pred CCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCC-----------------CCHHH
Confidence 45666666654432 111 1123567778999999999997 222333221010 1122
Q ss_pred -hhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHhC
Q 027734 145 -DDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKAG 212 (219)
Q Consensus 145 -~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~ 212 (219)
..++.+|..+|.+++|.|+.+||..++..++. ..+++++..+|+.+|.|++|.|+++||.+.+...
T Consensus 178 ~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~--~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 178 RSFARRILAIVDYDEDGQLSFSEFSDLIKAFGN--LVAANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhcc--CCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 23899999999999999999999999998874 3588899999999999999999999999999874
No 56
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.90 E-value=1.5e-08 Score=79.59 Aligned_cols=134 Identities=18% Similarity=0.242 Sum_probs=98.3
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcccCC---HHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCccccCC
Q 027734 53 KAELKRVFATFDKDGDGFITKTELVESLRNLRLMVT---DMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKGG 129 (219)
Q Consensus 53 ~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~---~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~ 129 (219)
.+.+..-|..+|+..+|.|+..+|..++-......+ ...+.++-++++.+ +..||++||..++.....
T Consensus 317 ~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~-------- 387 (489)
T KOG2643|consen 317 EEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNN-------- 387 (489)
T ss_pred HHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhh--------
Confidence 334455688888888888888888888766432222 22455666666655 566899998888877733
Q ss_pred CCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHc-CCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHH
Q 027734 130 AGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSAL-GLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRM 208 (219)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~-~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~ 208 (219)
...+..+...|-.. .+.|+..+|+++.... |.+ +++..++-+|+.+|.|+||.++++||+..
T Consensus 388 --------------l~dfd~Al~fy~~A-g~~i~~~~f~raa~~vtGve--LSdhVvdvvF~IFD~N~Dg~LS~~EFl~V 450 (489)
T KOG2643|consen 388 --------------LNDFDIALRFYHMA-GASIDEKTFQRAAKVVTGVE--LSDHVVDVVFTIFDENNDGTLSHKEFLAV 450 (489)
T ss_pred --------------hhHHHHHHHHHHHc-CCCCCHHHHHHHHHHhcCcc--cccceeeeEEEEEccCCCCcccHHHHHHH
Confidence 35566666666643 5789999999988764 543 57778889999999999999999999999
Q ss_pred HHhC
Q 027734 209 MKAG 212 (219)
Q Consensus 209 l~~~ 212 (219)
+++.
T Consensus 451 mk~R 454 (489)
T KOG2643|consen 451 MKRR 454 (489)
T ss_pred HHHH
Confidence 8763
No 57
>PF14658 EF-hand_9: EF-hand domain
Probab=98.85 E-value=1.8e-08 Score=58.80 Aligned_cols=62 Identities=34% Similarity=0.556 Sum_probs=56.3
Q ss_pred HHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCC-CceeHHHHHHHHHh
Q 027734 149 DAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGD-GMVNFDEFRRMMKA 211 (219)
Q Consensus 149 ~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~d-g~i~~~eF~~~l~~ 211 (219)
.+|..||.++.|.|...++..+|+.++.+ ..++.+++.+.+.+|+++. |.|+++.|...|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~-~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGR-SPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCC-CCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 47999999999999999999999999972 3488899999999999887 99999999998874
No 58
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.84 E-value=2.8e-08 Score=62.89 Aligned_cols=69 Identities=19% Similarity=0.335 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHhcCC--CCCcccHHHHHHHHH-hhcccCC----HHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 027734 51 YKKAELKRVFATFDKD--GDGFITKTELVESLR-NLRLMVT----DMEAEEMVAKVDANGDGLIEFDEFCMLYEGM 119 (219)
Q Consensus 51 ~~~~~~~~~F~~~D~~--~~g~is~~el~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 119 (219)
..+..+-..|..++.. .+|.|+.+||+.++. .++..++ ..++..++..+|.+++|.|+|+||+.++...
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 3456788899999866 479999999999997 4555555 8999999999999999999999999988755
No 59
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.83 E-value=1.1e-07 Score=74.40 Aligned_cols=128 Identities=20% Similarity=0.264 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCccccCCC
Q 027734 51 YKKAELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKGGA 130 (219)
Q Consensus 51 ~~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~ 130 (219)
...+....+|..+|.|.||.++.+||+..+.. .+.++..+|...|.+.||.|+.+|....+...--.
T Consensus 48 ~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~-----~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~-------- 114 (463)
T KOG0036|consen 48 PNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN-----KELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQ-------- 114 (463)
T ss_pred CchHHHHHHHHhcccCcCCcccHHHHHHHHHH-----hHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCc--------
Confidence 34556788999999999999999999999875 67788899999999999999999999988876444
Q ss_pred CCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHH------HcCCCCCceeHHH
Q 027734 131 GDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRK------VDVDGDGMVNFDE 204 (219)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~------~d~~~dg~i~~~e 204 (219)
-..++..+.|+..|+++++.|+++|++..+... +++.+..++.. +|...+..|. ++
T Consensus 115 -----------l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~------p~s~i~di~~~W~h~~~idigE~~~iP-dg 176 (463)
T KOG0036|consen 115 -----------LSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLY------PESDLEDIYDFWRHVLLIDIGEDAVLP-DG 176 (463)
T ss_pred -----------cCHHHHHHHHHHhccCCCeeeccHHHHhhhhcC------ChhHHHHHHHhhhhheEEEccccccCC-cc
Confidence 566778889999999999999999999887543 23455555443 3555566665 55
Q ss_pred HHHHH
Q 027734 205 FRRMM 209 (219)
Q Consensus 205 F~~~l 209 (219)
|....
T Consensus 177 ~s~~e 181 (463)
T KOG0036|consen 177 DSKLE 181 (463)
T ss_pred hHHHH
Confidence 54443
No 60
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.80 E-value=2.4e-08 Score=63.17 Aligned_cols=69 Identities=14% Similarity=0.254 Sum_probs=55.9
Q ss_pred HhhHHHHHhhhcCC--CCCcccHHHHHHHHH-HcCCCC--CCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHhC
Q 027734 144 GDDLKDAFDVFDKD--KDGLISVEELGLVLS-ALGLNE--GNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKAG 212 (219)
Q Consensus 144 ~~~~~~~F~~~D~~--~~G~I~~~e~~~~l~-~~~~~~--~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~ 212 (219)
...+-..|..|+.. ++|.|+.+|++.++. .++... ..++.+++.++..+|.+++|.|+|+||+..+...
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 35667889999976 479999999999997 444221 1228899999999999999999999999988754
No 61
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.76 E-value=2.8e-07 Score=65.23 Aligned_cols=111 Identities=24% Similarity=0.367 Sum_probs=84.9
Q ss_pred ccHhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCcccc
Q 027734 48 TSAYKKAELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEK 127 (219)
Q Consensus 48 ~~~~~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~ 127 (219)
.+..+++.+...|..+|.+.||+|+..|++..+.++|-+-+.--+..++...|.|.||+|+|.||+-++......-..
T Consensus 93 FsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~-- 170 (244)
T KOG0041|consen 93 FSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQ-- 170 (244)
T ss_pred HHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccc--
Confidence 555788888999999999999999999999999999998888899999999999999999999999888766443000
Q ss_pred CCCCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHH
Q 027734 128 GGAGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSA 173 (219)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~ 173 (219)
....-....-....|..+-|......|-.+=..
T Consensus 171 -------------~ds~~~~LAr~~eVDVskeGV~GAknFFeAKI~ 203 (244)
T KOG0041|consen 171 -------------EDSGLLRLARLSEVDVSKEGVSGAKNFFEAKIE 203 (244)
T ss_pred -------------cchHHHHHHHhcccchhhhhhhhHHHHHHHHHH
Confidence 011111112233478888888877776554433
No 62
>PF14658 EF-hand_9: EF-hand domain
Probab=98.75 E-value=5.4e-08 Score=56.83 Aligned_cols=60 Identities=23% Similarity=0.514 Sum_probs=56.6
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHhhcc-cCCHHHHHHHHHhhCCCCC-CcccHHHHHHHHHh
Q 027734 59 VFATFDKDGDGFITKTELVESLRNLRL-MVTDMEAEEMVAKVDANGD-GLIEFDEFCMLYEG 118 (219)
Q Consensus 59 ~F~~~D~~~~g~is~~el~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-g~i~~~eF~~~~~~ 118 (219)
.|..||+++.|.|...++..+|+.++. .+++.+++.+.+.+|+++. |.|+++.|+..+..
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 689999999999999999999999988 8999999999999999997 99999999998864
No 63
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.71 E-value=8.9e-08 Score=67.73 Aligned_cols=68 Identities=32% Similarity=0.546 Sum_probs=60.0
Q ss_pred hHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHhC
Q 027734 143 EGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKAG 212 (219)
Q Consensus 143 ~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~ 212 (219)
........|+.||.+.||+|+..|++.++.++|.+. |---++.+++..|.|.||+||+-||.-.++..
T Consensus 97 qIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQ--THL~lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 97 QIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQ--THLGLKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHHHHHHhcccccccccHHHHHHHHHHhCCch--hhHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 345678899999999999999999999999999764 66678999999999999999999998877653
No 64
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.71 E-value=3.9e-07 Score=81.20 Aligned_cols=142 Identities=20% Similarity=0.342 Sum_probs=110.4
Q ss_pred CCCCCcccHhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcccC--C-----HHHHHHHHHhhCCCCCCcccHHHHHH
Q 027734 42 TTGESRTSAYKKAELKRVFATFDKDGDGFITKTELVESLRNLRLMV--T-----DMEAEEMVAKVDANGDGLIEFDEFCM 114 (219)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~--~-----~~~~~~~~~~~d~~~~g~i~~~eF~~ 114 (219)
.......|++...++...|..||++.+|.++..+|+..|+.+|..+ . +.++..++...|++.+|.|+..+|..
T Consensus 2241 arn~~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~a 2320 (2399)
T KOG0040|consen 2241 ARNHNGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMA 2320 (2399)
T ss_pred hhccCCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHH
Confidence 3344668999999999999999999999999999999999998855 2 33799999999999999999999999
Q ss_pred HHHhhcCCCccccCCCCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHH---
Q 027734 115 LYEGMMGGDRQEKGGAGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRK--- 191 (219)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~--- 191 (219)
++...-..+ -...+.+..+|+.+|. +..+++.+++...| +.+++.-.+..
T Consensus 2321 fmi~~ETeN-----------------I~s~~eIE~AfraL~a-~~~yvtke~~~~~l---------treqaefc~s~m~~ 2373 (2399)
T KOG0040|consen 2321 FMISKETEN-----------------ILSSEEIEDAFRALDA-GKPYVTKEELYQNL---------TREQAEFCMSKMKP 2373 (2399)
T ss_pred HHHhccccc-----------------ccchHHHHHHHHHhhc-CCccccHHHHHhcC---------CHHHHHHHHHHhhh
Confidence 987653331 2334589999999998 77899999986443 55554444433
Q ss_pred -HcCC----CCCceeHHHHHHHHH
Q 027734 192 -VDVD----GDGMVNFDEFRRMMK 210 (219)
Q Consensus 192 -~d~~----~dg~i~~~eF~~~l~ 210 (219)
++.. .-+.++|.+|++-+.
T Consensus 2374 ~~e~~~~~s~q~~l~y~dfv~sl~ 2397 (2399)
T KOG0040|consen 2374 YAETSSGRSDQVALDYKDFVNSLF 2397 (2399)
T ss_pred hcccccCCCccccccHHHHHHHHh
Confidence 3332 234589999988664
No 65
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.69 E-value=1.4e-07 Score=74.35 Aligned_cols=138 Identities=16% Similarity=0.167 Sum_probs=82.5
Q ss_pred cCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCccccCCCCCCCCCCCCCCCh
Q 027734 64 DKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKGGAGDGEGGGGGGADE 143 (219)
Q Consensus 64 D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (219)
+-+.+|.||+.|+.-++.-+.. +.......|+.+|.|+||.|+.+||....+..........+.+.......+.....
T Consensus 209 ~lg~~GLIsfSdYiFLlTlLS~--p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~ 286 (489)
T KOG2643|consen 209 KLGESGLISFSDYIFLLTLLSI--PERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEV 286 (489)
T ss_pred EcCCCCeeeHHHHHHHHHHHcc--CcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhh
Confidence 3466899999999888776654 56677778999999999999999999888766555333332222211111111011
Q ss_pred HhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHh
Q 027734 144 GDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKA 211 (219)
Q Consensus 144 ~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 211 (219)
... -.-..|..+++|+++.+||.+++..+. .+...-=|..+|+...|.|+..+|..++-.
T Consensus 287 nsa--L~~yFFG~rg~~kLs~deF~~F~e~Lq------~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~ 346 (489)
T KOG2643|consen 287 NSA--LLTYFFGKRGNGKLSIDEFLKFQENLQ------EEILELEFERFDKGDSGAISEVDFAELLLA 346 (489)
T ss_pred hhh--HHHHhhccCCCccccHHHHHHHHHHHH------HHHHHHHHHHhCcccccccCHHHHHHHHHH
Confidence 111 112234566666677777666665543 222333355666665566666666655543
No 66
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.59 E-value=2.9e-07 Score=59.71 Aligned_cols=70 Identities=20% Similarity=0.340 Sum_probs=59.8
Q ss_pred cccHhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 027734 47 RTSAYKKAELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGM 119 (219)
Q Consensus 47 ~~~~~~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 119 (219)
.++++++..+..+|..+|+ ++|.|+.++.+.++.+.+ ++.+.+..+|...|.+++|.++++||+-.+..+
T Consensus 3 ~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp --SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 4678899999999999986 589999999999988765 478999999999999999999999998776654
No 67
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.57 E-value=1.2e-06 Score=55.02 Aligned_cols=67 Identities=18% Similarity=0.422 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHh-----hcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 027734 52 KKAELKRVFATFDKDGDGFITKTELVESLRN-----LRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGM 119 (219)
Q Consensus 52 ~~~~~~~~F~~~D~~~~g~is~~el~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 119 (219)
.+..+-.+|..+- ...+.++..||+.++.+ +...-.+..++.++...|.|+||.|+|.||+.++..+
T Consensus 6 ai~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 6 SMEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4556778899996 44679999999999965 2334467889999999999999999999999988765
No 68
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.56 E-value=1.6e-07 Score=46.05 Aligned_cols=27 Identities=48% Similarity=0.923 Sum_probs=17.2
Q ss_pred HHHHHHHHHcCCCCCceeHHHHHHHHH
Q 027734 184 NCKKMIRKVDVDGDGMVNFDEFRRMMK 210 (219)
Q Consensus 184 ~~~~~~~~~d~~~dg~i~~~eF~~~l~ 210 (219)
+++.+|+.+|+|+||.|+++||...++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 355666666666666666666666654
No 69
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.54 E-value=1.4e-07 Score=46.22 Aligned_cols=28 Identities=50% Similarity=0.748 Sum_probs=25.7
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHHHHHc
Q 027734 147 LKDAFDVFDKDKDGLISVEELGLVLSAL 174 (219)
Q Consensus 147 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~ 174 (219)
++.+|+.+|+|++|+|+.+||+.+++.+
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 6789999999999999999999998764
No 70
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.53 E-value=1.8e-07 Score=70.95 Aligned_cols=107 Identities=17% Similarity=0.223 Sum_probs=90.3
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCccccCCCCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHH
Q 027734 90 MEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKGGAGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGL 169 (219)
Q Consensus 90 ~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~ 169 (219)
..+..+|..||.+++|.++|.|.+..+..+... ......++-+|+.|+.+.||.++..++--
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p------------------~~t~~iiq~afk~f~v~eDg~~ge~~ls~ 320 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGP------------------PVTPVIIQYAFKRFSVAEDGISGEHILSL 320 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCC------------------CCcHHHHHHHHHhcccccccccchHHHHH
Confidence 567789999999999999999999888776555 56778899999999999999999999988
Q ss_pred HHHH-cCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHhCCccccc
Q 027734 170 VLSA-LGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKAGGVLLTA 218 (219)
Q Consensus 170 ~l~~-~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~~~~~ 218 (219)
+++. +|.. .-.+-.+|...+...+|+|++++|.++....|.++.+
T Consensus 321 ilq~~lgv~----~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~~p~~a~~ 366 (412)
T KOG4666|consen 321 ILQVVLGVE----VLRVPVLFPSIEQKDDPKIYASNFRKFAATEPNLALS 366 (412)
T ss_pred HHHHhcCcc----eeeccccchhhhcccCcceeHHHHHHHHHhCchhhhh
Confidence 8875 3432 2246668888888889999999999999999988754
No 71
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.50 E-value=6.8e-06 Score=69.35 Aligned_cols=147 Identities=16% Similarity=0.346 Sum_probs=123.6
Q ss_pred CCcccHhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCc
Q 027734 45 ESRTSAYKKAELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDR 124 (219)
Q Consensus 45 ~~~~~~~~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~ 124 (219)
...........+..+|...|++.+|.++..+...++..+...+....+..+++..+..+++++..++|..+.......
T Consensus 127 ~~~~~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r-- 204 (746)
T KOG0169|consen 127 SMRQRSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR-- 204 (746)
T ss_pred hhhhcchHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC--
Confidence 334445566678899999999999999999999999999888889999999999999999999999999988766333
Q ss_pred cccCCCCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCC----CCCce
Q 027734 125 QEKGGAGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVD----GDGMV 200 (219)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~----~dg~i 200 (219)
..+...|..+-.+ .+.++.+++..++...+...+.+.+.+.++++.+... ..+.+
T Consensus 205 --------------------pev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l 263 (746)
T KOG0169|consen 205 --------------------PEVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLL 263 (746)
T ss_pred --------------------chHHHHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhcccccee
Confidence 3788899988865 8999999999999988766667888999999888543 45669
Q ss_pred eHHHHHHHHHhCCc
Q 027734 201 NFDEFRRMMKAGGV 214 (219)
Q Consensus 201 ~~~eF~~~l~~~~~ 214 (219)
+++.|.++|.....
T Consensus 264 ~ldgF~~yL~S~~~ 277 (746)
T KOG0169|consen 264 SLDGFTRYLFSPDC 277 (746)
T ss_pred cHHHHHHHhcCccC
Confidence 99999999976554
No 72
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.42 E-value=1.6e-06 Score=58.28 Aligned_cols=103 Identities=18% Similarity=0.295 Sum_probs=78.8
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhhcc-cCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCccccCCCCCCCC
Q 027734 57 KRVFATFDKDGDGFITKTELVESLRNLRL-MVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKGGAGDGEG 135 (219)
Q Consensus 57 ~~~F~~~D~~~~g~is~~el~~~l~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~ 135 (219)
+++...+..+|.|.+|.++|...+.-+.. .+.+-.+...|+.||-|+|+.|.-++....+..+.......
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~--------- 144 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSD--------- 144 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCH---------
Confidence 35667788999999999999998876543 33445577788999999999999999998888776551111
Q ss_pred CCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHH
Q 027734 136 GGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSA 173 (219)
Q Consensus 136 ~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~ 173 (219)
......+.++....|.|++|+|+..||.+++..
T Consensus 145 -----eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 145 -----EEVELICEKVIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred -----HHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Confidence 122334566777889999999999999998754
No 73
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.41 E-value=3.4e-06 Score=52.94 Aligned_cols=67 Identities=18% Similarity=0.308 Sum_probs=53.5
Q ss_pred HhhHHHHHhhhcCCCCCcccHHHHHHHHHHcC---CCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHh
Q 027734 144 GDDLKDAFDVFDKDKDGLISVEELGLVLSALG---LNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKA 211 (219)
Q Consensus 144 ~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~---~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 211 (219)
...+-.+|..|.. +.|.++..||+.++...- ......+..++.+++.+|.|+||.|++.||+.++..
T Consensus 7 i~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 7 MEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 3556788999994 467999999999996531 111236678999999999999999999999998764
No 74
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.39 E-value=1.4e-05 Score=64.24 Aligned_cols=104 Identities=25% Similarity=0.437 Sum_probs=78.2
Q ss_pred HHHHHHHHH---HHhcCCCCCcccHHHHHHHHHhhc-c-cCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCccc
Q 027734 52 KKAELKRVF---ATFDKDGDGFITKTELVESLRNLR-L-MVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQE 126 (219)
Q Consensus 52 ~~~~~~~~F---~~~D~~~~g~is~~el~~~l~~~~-~-~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~ 126 (219)
+..+++.+| ...+.++.-+++.++|......+- . ...++.+..+-...|..+||-|+|+||+.+-.-+
T Consensus 31 ~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~l------- 103 (694)
T KOG0751|consen 31 DPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVL------- 103 (694)
T ss_pred ChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhc-------
Confidence 344555555 455778888999999988665542 2 3456666666677788899999999999765433
Q ss_pred cCCCCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCC
Q 027734 127 KGGAGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGL 176 (219)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~ 176 (219)
.........+|+.||..++|.+|.+++..++.....
T Consensus 104 --------------C~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l 139 (694)
T KOG0751|consen 104 --------------CAPDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNL 139 (694)
T ss_pred --------------cCchHHHHHHHHHhcccCCCceehHHHHHHHhcccc
Confidence 334567788999999999999999999999987644
No 75
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=9.6e-06 Score=68.38 Aligned_cols=158 Identities=21% Similarity=0.250 Sum_probs=114.9
Q ss_pred CcccHhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCcc
Q 027734 46 SRTSAYKKAELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQ 125 (219)
Q Consensus 46 ~~~~~~~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~ 125 (219)
..+|.+++..-..-|..+ +.+.|+||-.+-+.++.+.+. ....+..+|...|.|+||+++..||.-.+..+......
T Consensus 8 WavT~~Er~K~~~qF~~L-kp~~gfitg~qArnfflqS~L--P~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG 84 (1118)
T KOG1029|consen 8 WAVTDEERQKHDAQFGQL-KPGQGFITGDQARNFFLQSGL--PTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQG 84 (1118)
T ss_pred cccchHHHHHHHHHHhcc-CCCCCccchHhhhhhHHhcCC--ChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcC
Confidence 456777777777788888 556899999999999977665 66788899999999999999999997655432110000
Q ss_pred c---------------------cC------------------------------------------CCCCC-------CC
Q 027734 126 E---------------------KG------------------------------------------GAGDG-------EG 135 (219)
Q Consensus 126 ~---------------------~~------------------------------------------~~~~~-------~~ 135 (219)
. +. ..+.. ..
T Consensus 85 ~~lP~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~sp 164 (1118)
T KOG1029|consen 85 IQLPPVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSP 164 (1118)
T ss_pred CcCCCCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCC
Confidence 0 00 00000 00
Q ss_pred ---------------------CCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcC
Q 027734 136 ---------------------GGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDV 194 (219)
Q Consensus 136 ---------------------~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~ 194 (219)
.+.......-.++.+|..+|+..+|++|-..-|.+|-.-++ +...+-.++...|.
T Consensus 165 l~~~ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~L----pq~~LA~IW~LsDv 240 (1118)
T KOG1029|consen 165 LPHDSSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSGL----PQNQLAHIWTLSDV 240 (1118)
T ss_pred CCCCcchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcCC----chhhHhhheeeecc
Confidence 00111222346788999999999999999999999977664 55688899999999
Q ss_pred CCCCceeHHHHHHHHH
Q 027734 195 DGDGMVNFDEFRRMMK 210 (219)
Q Consensus 195 ~~dg~i~~~eF~~~l~ 210 (219)
|+||+++-+||+-.+.
T Consensus 241 d~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 241 DGDGKLSADEFILAMH 256 (1118)
T ss_pred CCCCcccHHHHHHHHH
Confidence 9999999999987654
No 76
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.37 E-value=6.4e-07 Score=44.81 Aligned_cols=29 Identities=55% Similarity=0.975 Sum_probs=23.2
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHHHH-HcC
Q 027734 147 LKDAFDVFDKDKDGLISVEELGLVLS-ALG 175 (219)
Q Consensus 147 ~~~~F~~~D~~~~G~I~~~e~~~~l~-~~~ 175 (219)
++.+|+.+|.+++|+|+.+||+.++. .+|
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 57788888998899999999888887 454
No 77
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.35 E-value=2.9e-06 Score=57.72 Aligned_cols=67 Identities=25% Similarity=0.391 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 027734 51 YKKAELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYE 117 (219)
Q Consensus 51 ~~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 117 (219)
...+.+...|..+|.+++|.|..+.++.+|...|-+.+++++..+++.+-.+..|.++|.+|+..+.
T Consensus 98 dpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 98 DPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred CHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 3456788999999999999999999999999999999999999999999999999999999998876
No 78
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.27 E-value=1.7e-06 Score=43.22 Aligned_cols=30 Identities=53% Similarity=0.834 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHH-hhc
Q 027734 55 ELKRVFATFDKDGDGFITKTELVESLR-NLR 84 (219)
Q Consensus 55 ~~~~~F~~~D~~~~g~is~~el~~~l~-~~~ 84 (219)
+++.+|+.+|++++|.|+.+||..++. .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 467889999999999999999999988 454
No 79
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.22 E-value=2.3e-05 Score=52.51 Aligned_cols=107 Identities=17% Similarity=0.202 Sum_probs=86.9
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCccccCCCCCCCCCCCCCCChHhhHHHHHhhhcCC--CCCcccHHH
Q 027734 89 DMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKGGAGDGEGGGGGGADEGDDLKDAFDVFDKD--KDGLISVEE 166 (219)
Q Consensus 89 ~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~--~~G~I~~~e 166 (219)
..+++.+|..||..+||+|++.+--..++..-.. +....+.++...++.+ +--.|+.++
T Consensus 10 ~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~n-------------------PT~aeV~k~l~~~~~~~~~~~rl~FE~ 70 (152)
T KOG0030|consen 10 MEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQN-------------------PTNAEVLKVLGQPKRREMNVKRLDFEE 70 (152)
T ss_pred HHHHHHHHHHHhccCcccccHHHHHHHHHHhcCC-------------------CcHHHHHHHHcCcccchhhhhhhhHHH
Confidence 4788899999999999999999988777766444 6667788888888876 456799999
Q ss_pred HHHHHHHcCCC-CCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHhCCc
Q 027734 167 LGLVLSALGLN-EGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKAGGV 214 (219)
Q Consensus 167 ~~~~l~~~~~~-~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~ 214 (219)
|.-++..++.+ .+-+-++.-+-++.+|++++|.|...|+++.+..-+.
T Consensus 71 fLpm~q~vaknk~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGe 119 (152)
T KOG0030|consen 71 FLPMYQQVAKNKDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGE 119 (152)
T ss_pred HHHHHHHHHhccccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHh
Confidence 98888776543 2357778888899999999999999999999876543
No 80
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.21 E-value=1.6e-05 Score=51.65 Aligned_cols=65 Identities=26% Similarity=0.446 Sum_probs=56.4
Q ss_pred CChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHH
Q 027734 141 ADEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMK 210 (219)
Q Consensus 141 ~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~ 210 (219)
......+..+|+..|. ++|.|+.++.+.++..-++ +.+.+..++...|.+++|.++.+||+-++.
T Consensus 6 ~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L----~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 6 PEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGL----PRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp CCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTS----SHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCC----CHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 4667888999999985 6899999999999988773 668999999999999999999999987664
No 81
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.18 E-value=1e-05 Score=44.63 Aligned_cols=50 Identities=20% Similarity=0.335 Sum_probs=41.5
Q ss_pred cccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 027734 70 FITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGM 119 (219)
Q Consensus 70 ~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 119 (219)
.+|..|++.+|+.++..+++.-+..+|...|.+++|++.-+||..++..+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 37899999999999999999999999999999999999999999988653
No 82
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.16 E-value=3e-06 Score=39.92 Aligned_cols=23 Identities=57% Similarity=0.803 Sum_probs=13.0
Q ss_pred HHHHhhhcCCCCCcccHHHHHHH
Q 027734 148 KDAFDVFDKDKDGLISVEELGLV 170 (219)
Q Consensus 148 ~~~F~~~D~~~~G~I~~~e~~~~ 170 (219)
+.+|+.+|.|++|.|+.+|++++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 34555566666666666655543
No 83
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.15 E-value=7e-06 Score=65.84 Aligned_cols=56 Identities=25% Similarity=0.387 Sum_probs=49.8
Q ss_pred CChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHh
Q 027734 141 ADEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKA 211 (219)
Q Consensus 141 ~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 211 (219)
......++.+|+.+|.+++|.|+.+||.. +..+|+.+|.|+||.|+++||...+..
T Consensus 330 ~~~~~~l~~aF~~~D~dgdG~Is~~E~~~---------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 330 EAFTHAAQEIFRLYDLDGDGFITREEWLG---------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred ChhhHHHHHHHHHhCCCCCCcCcHHHHHH---------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 46677889999999999999999999831 567899999999999999999998764
No 84
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.13 E-value=7.5e-06 Score=73.43 Aligned_cols=75 Identities=21% Similarity=0.382 Sum_probs=66.6
Q ss_pred CCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHH-----HHHHHHHHHcCCCCCceeHHHHHHHHHhCCc
Q 027734 140 GADEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIE-----NCKKMIRKVDVDGDGMVNFDEFRRMMKAGGV 214 (219)
Q Consensus 140 ~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~-----~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~ 214 (219)
+......+..+|+.||.+++|.++..+|+.+|+.+|+..++-++ ++..++...|++.+|.|+..+|++||....+
T Consensus 2248 tEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ET 2327 (2399)
T KOG0040|consen 2248 TEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKET 2327 (2399)
T ss_pred CHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhccc
Confidence 35667788899999999999999999999999999987654444 8999999999999999999999999988765
No 85
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.12 E-value=1.8e-05 Score=43.63 Aligned_cols=49 Identities=18% Similarity=0.339 Sum_probs=40.7
Q ss_pred cccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHh
Q 027734 161 LISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKA 211 (219)
Q Consensus 161 ~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 211 (219)
+++..|++++|+.+.+. ++++.+..+|+..|++++|.+.-+||..+++.
T Consensus 1 kmsf~Evk~lLk~~NI~--~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIE--MDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT------HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccC--cCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 36889999999999854 59999999999999999999999999999864
No 86
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.11 E-value=1.1e-05 Score=63.96 Aligned_cols=67 Identities=27% Similarity=0.402 Sum_probs=58.9
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhhc----ccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhc
Q 027734 54 AELKRVFATFDKDGDGFITKTELVESLRNLR----LMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMM 120 (219)
Q Consensus 54 ~~~~~~F~~~D~~~~g~is~~el~~~l~~~~----~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~ 120 (219)
..+.-+|+.+|.|++|.||.+||+.+.+.++ ...++..+..+.+..|.|+||.|++.||+..+....
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvd 617 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVD 617 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhc
Confidence 4567789999999999999999999887654 467889999999999999999999999999887653
No 87
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.09 E-value=1.6e-05 Score=63.93 Aligned_cols=112 Identities=19% Similarity=0.145 Sum_probs=63.5
Q ss_pred hcCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCccccCCCCCCCC-C-----
Q 027734 63 FDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKGGAGDGEG-G----- 136 (219)
Q Consensus 63 ~D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~-~----- 136 (219)
.|...||.|+++||+.+=.-+.. ++.-....|..+|+.++|.++++++...+............-...... .
T Consensus 83 aD~tKDglisf~eF~afe~~lC~--pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~ 160 (694)
T KOG0751|consen 83 ADQTKDGLISFQEFRAFESVLCA--PDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIR 160 (694)
T ss_pred hhhcccccccHHHHHHHHhhccC--chHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHH
Confidence 35566777777777764333332 355556667777777777777777777665443221100000000000 0
Q ss_pred ----------CCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCC
Q 027734 137 ----------GGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGL 176 (219)
Q Consensus 137 ----------~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~ 176 (219)
+-......+..+.+|+..|+.++|+||.=+|+..+-..-.
T Consensus 161 ~r~~ny~~f~Q~lh~~~~E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~ 210 (694)
T KOG0751|consen 161 KRHLNYAEFTQFLHEFQLEHAEQAFREKDKAKNGFISVLDFQDIMVTIRI 210 (694)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHhcccCCCeeeeechHhhhhhhhh
Confidence 0001223455677888889999999998888888765543
No 88
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.06 E-value=1.8e-06 Score=57.07 Aligned_cols=63 Identities=24% Similarity=0.355 Sum_probs=47.6
Q ss_pred ChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHH
Q 027734 142 DEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRM 208 (219)
Q Consensus 142 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~ 208 (219)
.....+..-|..+|.|+||.|+..|++.+...+. ..+..+..++...|.|+||.||..||..+
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~----~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLM----PPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTS----TTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHh----hhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 4556788889999999999999999987766552 25567999999999999999999999865
No 89
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.06 E-value=8.8e-06 Score=38.32 Aligned_cols=25 Identities=40% Similarity=0.885 Sum_probs=22.2
Q ss_pred HHHHHHHHcCCCCCceeHHHHHHHH
Q 027734 185 CKKMIRKVDVDGDGMVNFDEFRRMM 209 (219)
Q Consensus 185 ~~~~~~~~d~~~dg~i~~~eF~~~l 209 (219)
++.+|+.+|.|+||.|+.+||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999998864
No 90
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.04 E-value=1.5e-05 Score=64.01 Aligned_cols=57 Identities=28% Similarity=0.453 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhc
Q 027734 51 YKKAELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMM 120 (219)
Q Consensus 51 ~~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~ 120 (219)
.....+..+|+.+|.+++|.|+.+||.. +..+|..+|.|+||.|+++||...+...+
T Consensus 331 ~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~ 387 (391)
T PRK12309 331 AFTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAAL 387 (391)
T ss_pred hhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 3456788899999999999999999942 56789999999999999999999887653
No 91
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.01 E-value=8.5e-05 Score=59.49 Aligned_cols=163 Identities=17% Similarity=0.279 Sum_probs=111.6
Q ss_pred cchHHHHHHHHHHhcccCCCCCCCcccHhHH----HHHHHHHHHhcCCCCCcccHHHHHHHH--Hhhcc-----------
Q 027734 23 FPTKKFYAWIQSFFSKTATTTGESRTSAYKK----AELKRVFATFDKDGDGFITKTELVESL--RNLRL----------- 85 (219)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~F~~~D~~~~g~is~~el~~~l--~~~~~----------- 85 (219)
...-.+.+.++.+...-+ .......++... -.++++|-.+++.+.|.|+..++++-. ..+..
T Consensus 191 l~q~df~~~Lqeli~Thp-l~~l~~~pEf~~~Y~~tvi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~ 269 (493)
T KOG2562|consen 191 LRQDDFKPYLQELIATHP-LEFLDEEPEFQERYAETVIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVT 269 (493)
T ss_pred eeccccHHHHHHHHhcCC-chhhccChhHHHHHHHHHhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhh
Confidence 334445666776666544 222222222222 245789999999999999999876622 11111
Q ss_pred -cCCHHHHHHH---HHhhCCCCCCcccHHHHHHHHHhhcCCCccccCCCCCCCCCCCCCCChHhhHHHHHh----hhcCC
Q 027734 86 -MVTDMEAEEM---VAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKGGAGDGEGGGGGGADEGDDLKDAFD----VFDKD 157 (219)
Q Consensus 86 -~~~~~~~~~~---~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~----~~D~~ 157 (219)
-.+.+....+ |..+|.+.||.|+-++...+-.... ...-+.++|. ..-..
T Consensus 270 ~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~tl----------------------t~~ivdRIFs~v~r~~~~~ 327 (493)
T KOG2562|consen 270 RYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDHTL----------------------TERIVDRIFSQVPRGFTVK 327 (493)
T ss_pred hheeHHHHHHHHHHHhhhccccccccCHHHHHHHhccch----------------------hhHHHHHHHhhccccceee
Confidence 1122223334 5667999999999999887765543 3367889999 44556
Q ss_pred CCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHH
Q 027734 158 KDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMK 210 (219)
Q Consensus 158 ~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~ 210 (219)
.+|.|+.++|..++-++.... +...++.+|+-+|.+++|.++..|...++.
T Consensus 328 ~eGrmdykdFv~FilA~e~k~--t~~SleYwFrclDld~~G~Lt~~el~~fye 378 (493)
T KOG2562|consen 328 VEGRMDYKDFVDFILAEEDKD--TPASLEYWFRCLDLDGDGILTLNELRYFYE 378 (493)
T ss_pred ecCcccHHHHHHHHHHhccCC--CccchhhheeeeeccCCCcccHHHHHHHHH
Confidence 799999999999998876443 667899999999999999999998766654
No 92
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.01 E-value=3.8e-06 Score=55.60 Aligned_cols=65 Identities=29% Similarity=0.457 Sum_probs=46.4
Q ss_pred ccHhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q 027734 48 TSAYKKAELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCM 114 (219)
Q Consensus 48 ~~~~~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 114 (219)
........+.-.|..+|.|+||.|+..|+..+...+ ...+.=+..+++..|.|+||.||..|+..
T Consensus 48 ~~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 48 SYSECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp TGGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred chhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 334455667778999999999999999999976644 33444577899999999999999999864
No 93
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.94 E-value=4.9e-05 Score=61.67 Aligned_cols=77 Identities=27% Similarity=0.514 Sum_probs=67.5
Q ss_pred CCcccHhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcccC---CHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcC
Q 027734 45 ESRTSAYKKAELKRVFATFDKDGDGFITKTELVESLRNLRLMV---TDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMG 121 (219)
Q Consensus 45 ~~~~~~~~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~---~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~ 121 (219)
...+|+++...+++.|...| +++|+++..|+..++.+.+... ..++++.++...+.|.+|+|+|++|+..+.....
T Consensus 10 ~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s 88 (627)
T KOG0046|consen 10 QSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKS 88 (627)
T ss_pred cccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhh
Confidence 35688999999999999999 9999999999999999876643 4788999999999999999999999997776654
Q ss_pred C
Q 027734 122 G 122 (219)
Q Consensus 122 ~ 122 (219)
.
T Consensus 89 ~ 89 (627)
T KOG0046|consen 89 K 89 (627)
T ss_pred h
Confidence 4
No 94
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.91 E-value=7.1e-05 Score=46.75 Aligned_cols=67 Identities=18% Similarity=0.313 Sum_probs=57.4
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCC----CCCceeHHHHHHHHHhCCc
Q 027734 147 LKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVD----GDGMVNFDEFRRMMKAGGV 214 (219)
Q Consensus 147 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~----~dg~i~~~eF~~~l~~~~~ 214 (219)
+..+|..+.. +.+.||.++|+++|.........+.+.+..++..+..+ ..+.+++++|.++|.....
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~N 72 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDEN 72 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTTC
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCcC
Confidence 6789999976 78999999999999988766667899999999998655 4799999999999987664
No 95
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.88 E-value=0.00028 Score=58.46 Aligned_cols=161 Identities=20% Similarity=0.191 Sum_probs=105.4
Q ss_pred CCCcccHhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh-hcccCCHHHHHHHHHhhCCC-----CCCcccHHHHHHHHH
Q 027734 44 GESRTSAYKKAELKRVFATFDKDGDGFITKTELVESLRN-LRLMVTDMEAEEMVAKVDAN-----GDGLIEFDEFCMLYE 117 (219)
Q Consensus 44 ~~~~~~~~~~~~~~~~F~~~D~~~~g~is~~el~~~l~~-~~~~~~~~~~~~~~~~~d~~-----~~g~i~~~eF~~~~~ 117 (219)
..+.+.+.-+..+.++|...|.|.||.++-.|+...-+. ++.++...++..+-...+.. .+..++..-|+.+..
T Consensus 185 ~~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~ 264 (625)
T KOG1707|consen 185 EEQELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNT 264 (625)
T ss_pred ccccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHH
Confidence 345678888899999999999999999999999987655 45677777766655544322 134566666765444
Q ss_pred hhcCCCccc--c---------------------CCCCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHc
Q 027734 118 GMMGGDRQE--K---------------------GGAGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSAL 174 (219)
Q Consensus 118 ~~~~~~~~~--~---------------------~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~ 174 (219)
........+ + ....+.......+......+..+|..+|.|+||-++.+|+..++...
T Consensus 265 lfiergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~ 344 (625)
T KOG1707|consen 265 LFIERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTA 344 (625)
T ss_pred HHHHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhC
Confidence 332221111 1 11223333344455667788899999999999999999999999887
Q ss_pred CCCCCCcH-HHHHHHHHHHcCCCCCceeHHHHHHHH
Q 027734 175 GLNEGNKI-ENCKKMIRKVDVDGDGMVNFDEFRRMM 209 (219)
Q Consensus 175 ~~~~~~~~-~~~~~~~~~~d~~~dg~i~~~eF~~~l 209 (219)
+..+ +.+ -..+ ..-.+..|.++++-|....
T Consensus 345 P~~p-W~~~~~~~----~t~~~~~G~ltl~g~l~~W 375 (625)
T KOG1707|consen 345 PGSP-WTSSPYKD----STVKNERGWLTLNGFLSQW 375 (625)
T ss_pred CCCC-CCCCcccc----cceecccceeehhhHHHHH
Confidence 6433 110 0000 0112367888888887653
No 96
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=0.00019 Score=46.48 Aligned_cols=60 Identities=22% Similarity=0.388 Sum_probs=44.7
Q ss_pred HHHhhhcCCCCCcccHHHHHHHHHHc------CC-CCC-CcHHH----HHHHHHHHcCCCCCceeHHHHHHH
Q 027734 149 DAFDVFDKDKDGLISVEELGLVLSAL------GL-NEG-NKIEN----CKKMIRKVDVDGDGMVNFDEFRRM 208 (219)
Q Consensus 149 ~~F~~~D~~~~G~I~~~e~~~~l~~~------~~-~~~-~~~~~----~~~~~~~~d~~~dg~i~~~eF~~~ 208 (219)
-.|++.|.|++|+|+.-|+..++.-. |. +.. .++.+ ++.+++.-|.|+||.|+|.||.+.
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 46899999999999999998887543 22 222 34444 455566678999999999999864
No 97
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.51 E-value=4.6e-05 Score=56.02 Aligned_cols=67 Identities=28% Similarity=0.380 Sum_probs=51.6
Q ss_pred ChHhhHHHHHhhhcCCCCCcccHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHH
Q 027734 142 DEGDDLKDAFDVFDKDKDGLISVEELGLVLSA-LGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRM 208 (219)
Q Consensus 142 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~-~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~ 208 (219)
.....+..+|+..|.+.+|+||..|+++.+.. ..-+.+-..++.+..|+..|.|+||.|+++||.--
T Consensus 98 rsrrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvk 165 (362)
T KOG4251|consen 98 RSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVK 165 (362)
T ss_pred HHHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhH
Confidence 34567889999999999999999999887753 22111224456677888899999999999999643
No 98
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=97.40 E-value=0.00049 Score=53.19 Aligned_cols=99 Identities=20% Similarity=0.204 Sum_probs=80.0
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhhcc---cCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCccccCCC
Q 027734 54 AELKRVFATFDKDGDGFITKTELVESLRNLRL---MVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKGGA 130 (219)
Q Consensus 54 ~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~---~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~ 130 (219)
.+++++|..+-.++++......+...-..+.. ++=...+..+|+++|.|.|+.++..|...+..
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~l------------- 277 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIEL------------- 277 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhc-------------
Confidence 46788999998888777776666665444332 34467899999999999999999999887765
Q ss_pred CCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcC
Q 027734 131 GDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSALG 175 (219)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~ 175 (219)
...+..++..|...|..+||.|+..|....+..-+
T Consensus 278 ----------dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 278 ----------DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred ----------cCchhHHHHHHhhhcccccCccccchhhhhhccCC
Confidence 35567889999999999999999999999887766
No 99
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.39 E-value=0.0006 Score=55.61 Aligned_cols=69 Identities=33% Similarity=0.513 Sum_probs=58.7
Q ss_pred ChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCC-CcHHHHHHHHHHHcCCCCCceeHHHHHHHHHh
Q 027734 142 DEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEG-NKIENCKKMIRKVDVDGDGMVNFDEFRRMMKA 211 (219)
Q Consensus 142 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~-~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 211 (219)
.....++..|...| +++|+++..|+..++...+...+ ...+++++++...+.|.+|+|++++|+..+.+
T Consensus 16 ~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 16 EELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 44567788999999 99999999999999998875532 34789999999999999999999999996543
No 100
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.36 E-value=0.0061 Score=42.89 Aligned_cols=149 Identities=16% Similarity=0.152 Sum_probs=91.2
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCC---CCcccHHHHHHHHHhhcCCCccccCCCC
Q 027734 55 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANG---DGLIEFDEFCMLYEGMMGGDRQEKGGAG 131 (219)
Q Consensus 55 ~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~---~g~i~~~eF~~~~~~~~~~~~~~~~~~~ 131 (219)
.+++-..-+|+|+||.|.+-|--.-++.+|.++.-..+..++-.....- .+-+.-.-| .++-.+-...+...
T Consensus 8 ~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f-----~Iyi~nIhk~kHGS 82 (174)
T PF05042_consen 8 VLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFF-----RIYIKNIHKGKHGS 82 (174)
T ss_pred HHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCce-----eEEeecccccccCC
Confidence 4667777889999999999999999999998766555444443322111 111100000 11111111112222
Q ss_pred CCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCC---CCc--HHHHHHHHHHHcCCCCCceeHHHHH
Q 027734 132 DGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNE---GNK--IENCKKMIRKVDVDGDGMVNFDEFR 206 (219)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~---~~~--~~~~~~~~~~~d~~~dg~i~~~eF~ 206 (219)
.....-.......+....+|..++..+.+.||..|+.++++...... +.. .-|-..++.. -.+.||.+..+.-+
T Consensus 83 DSg~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L-~~d~dG~l~Ke~iR 161 (174)
T PF05042_consen 83 DSGAYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYIL-AKDKDGFLSKEDIR 161 (174)
T ss_pred CccccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHH-HcCcCCcEeHHHHh
Confidence 33333344567788999999999998899999999999998743221 111 1233333333 36789999999887
Q ss_pred HHH
Q 027734 207 RMM 209 (219)
Q Consensus 207 ~~l 209 (219)
.++
T Consensus 162 ~vY 164 (174)
T PF05042_consen 162 GVY 164 (174)
T ss_pred hhc
Confidence 764
No 101
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.18 E-value=0.0017 Score=49.99 Aligned_cols=102 Identities=18% Similarity=0.171 Sum_probs=84.1
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhh-cccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCccccCCCCC
Q 027734 54 AELKRVFATFDKDGDGFITKTELVESLRNL-RLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKGGAGD 132 (219)
Q Consensus 54 ~~~~~~F~~~D~~~~g~is~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~ 132 (219)
..+...|..+|.+++|.++..|.-..+.-+ +.+.+...++..|+.|+...||.+.-.+|.-+++....-
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv---------- 328 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGV---------- 328 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCc----------
Confidence 678889999999999999988877666654 446788899999999999999999999998888866544
Q ss_pred CCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcC
Q 027734 133 GEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSALG 175 (219)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~ 175 (219)
..-.+--.|...+...+|+|+.++|+++....+
T Consensus 329 ----------~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 329 ----------EVLRVPVLFPSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred ----------ceeeccccchhhhcccCcceeHHHHHHHHHhCc
Confidence 112345689999999999999999999986654
No 102
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=97.08 E-value=0.0031 Score=48.91 Aligned_cols=70 Identities=19% Similarity=0.142 Sum_probs=58.5
Q ss_pred CCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHhCCc
Q 027734 139 GGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKAGGV 214 (219)
Q Consensus 139 ~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~ 214 (219)
..+.-...+...|..+|.|.||.|+..|++.+- .+-.+..++.+|..-|...||.|+-.||..++.+...
T Consensus 244 ~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~------ldknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~~ 313 (434)
T KOG3555|consen 244 ILPICKDSLGWMFNKLDTNYDLLLDQSELRAIE------LDKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKSDP 313 (434)
T ss_pred cCcchhhhhhhhhhccccccccccCHHHhhhhh------ccCchhHHHHHHhhhcccccCccccchhhhhhccCCC
Confidence 344556788999999999999999999997664 2235568999999999999999999999999877653
No 103
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.04 E-value=0.001 Score=31.60 Aligned_cols=26 Identities=50% Similarity=0.754 Sum_probs=17.1
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHH
Q 027734 56 LKRVFATFDKDGDGFITKTELVESLR 81 (219)
Q Consensus 56 ~~~~F~~~D~~~~g~is~~el~~~l~ 81 (219)
++.+|..+|.+++|.|+..+|..++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 45566666777677777777666654
No 104
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.96 E-value=0.0016 Score=30.89 Aligned_cols=24 Identities=54% Similarity=0.819 Sum_probs=12.1
Q ss_pred HHHHhhhcCCCCCcccHHHHHHHH
Q 027734 148 KDAFDVFDKDKDGLISVEELGLVL 171 (219)
Q Consensus 148 ~~~F~~~D~~~~G~I~~~e~~~~l 171 (219)
+.+|+.+|.+++|.|+..+|..++
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~ 26 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLL 26 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHH
Confidence 344555555555555555555444
No 105
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.85 E-value=0.0046 Score=38.47 Aligned_cols=65 Identities=20% Similarity=0.390 Sum_probs=53.6
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhhcc--cCCHHHHHHHHHhhCCC----CCCcccHHHHHHHHHhhc
Q 027734 55 ELKRVFATFDKDGDGFITKTELVESLRNLRL--MVTDMEAEEMVAKVDAN----GDGLIEFDEFCMLYEGMM 120 (219)
Q Consensus 55 ~~~~~F~~~D~~~~g~is~~el~~~l~~~~~--~~~~~~~~~~~~~~d~~----~~g~i~~~eF~~~~~~~~ 120 (219)
++..+|..+-. +.+.||.++|..+|..-.. ..+...+..++.++..+ ..+.++++.|..++.+..
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 46788999944 7899999999999987644 35899999999998654 468999999999997653
No 106
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.78 E-value=0.0044 Score=50.43 Aligned_cols=74 Identities=18% Similarity=0.309 Sum_probs=65.6
Q ss_pred CcccHhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcC
Q 027734 46 SRTSAYKKAELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMG 121 (219)
Q Consensus 46 ~~~~~~~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~ 121 (219)
.++++++++.+-.-|+.+-+|..|.|+-.--+.++.+.. +.-.++..+|...|.+.||-+++.||+..+..+..
T Consensus 223 w~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVa 296 (737)
T KOG1955|consen 223 WQITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFHLVVA 296 (737)
T ss_pred cccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHhheee
Confidence 568999999999999999999999999999999887654 46789999999999999999999999998875543
No 107
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=0.04 Score=35.92 Aligned_cols=59 Identities=27% Similarity=0.464 Sum_probs=44.1
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhh------cc---c-CCHHHHH----HHHHhhCCCCCCcccHHHHHHH
Q 027734 57 KRVFATFDKDGDGFITKTELVESLRNL------RL---M-VTDMEAE----EMVAKVDANGDGLIEFDEFCML 115 (219)
Q Consensus 57 ~~~F~~~D~~~~g~is~~el~~~l~~~------~~---~-~~~~~~~----~~~~~~d~~~~g~i~~~eF~~~ 115 (219)
-..|+..|.|+++.|+--|+..++.-. +. + +++.++. .+++.-|.|+||.|+|-||+..
T Consensus 70 fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 70 FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 356899999999999999999888643 11 1 2344544 4555668999999999999864
No 108
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.45 E-value=0.026 Score=49.69 Aligned_cols=104 Identities=26% Similarity=0.200 Sum_probs=85.7
Q ss_pred cccHhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcccCCH-----HHHHHHHHhhCCCCCCcccHHHHHHHHHhhcC
Q 027734 47 RTSAYKKAELKRVFATFDKDGDGFITKTELVESLRNLRLMVTD-----MEAEEMVAKVDANGDGLIEFDEFCMLYEGMMG 121 (219)
Q Consensus 47 ~~~~~~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~-----~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~ 121 (219)
.+++....+++.+|+.+|....|.++.++++..+..+|.+... .++..+++..|.+..|++++.+|...+.....
T Consensus 740 ~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e 819 (890)
T KOG0035|consen 740 GTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYE 819 (890)
T ss_pred chhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhh
Confidence 3666777899999999999999999999999999999987654 33455666667777799999999999987766
Q ss_pred CCccccCCCCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHH
Q 027734 122 GDRQEKGGAGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGL 169 (219)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~ 169 (219)
. ......+..+|+.+-+++. +|..+|+.+
T Consensus 820 ~------------------l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 820 D------------------LDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred h------------------hcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 6 5667788888998887766 899999877
No 109
>PLN02952 phosphoinositide phospholipase C
Probab=96.43 E-value=0.045 Score=46.63 Aligned_cols=92 Identities=17% Similarity=0.252 Sum_probs=66.8
Q ss_pred CCCcccHHHHHHHHHhhcCCCccccCCCCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcH
Q 027734 103 GDGLIEFDEFCMLYEGMMGGDRQEKGGAGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKI 182 (219)
Q Consensus 103 ~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~ 182 (219)
+.|.++|++|..++..+... .......+..+|..+..+ .+.|+.++|.++|.........+.
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~-----------------~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e~~~~~ 74 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKIT-----------------EAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDELDCTL 74 (599)
T ss_pred cCCCcCHHHHHHHHHHhccc-----------------cCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcCCCH
Confidence 35899999998877755321 013457899999999754 478999999999998876544677
Q ss_pred HHHHHHHHHHc-------CCCCCceeHHHHHHHHHhC
Q 027734 183 ENCKKMIRKVD-------VDGDGMVNFDEFRRMMKAG 212 (219)
Q Consensus 183 ~~~~~~~~~~d-------~~~dg~i~~~eF~~~l~~~ 212 (219)
+.+..++..+- ....+.++++.|..++...
T Consensus 75 ~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~s~ 111 (599)
T PLN02952 75 AEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLLYD 111 (599)
T ss_pred HHHHHHHHHHHhhccccccccccCcCHHHHHHHHcCc
Confidence 77777766542 1123458999999999754
No 110
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.43 E-value=0.0061 Score=54.17 Aligned_cols=158 Identities=18% Similarity=0.196 Sum_probs=116.6
Q ss_pred CcccHhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCc-
Q 027734 46 SRTSAYKKAELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDR- 124 (219)
Q Consensus 46 ~~~~~~~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~- 124 (219)
..++..++..+..+|..+.++ .|.++-...+.++..- .+....+..+|...|.+.+|.++..||...+........
T Consensus 121 p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s--~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~~ 197 (847)
T KOG0998|consen 121 PAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNS--KLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLLNG 197 (847)
T ss_pred CCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcC--CCChhhhccccccccccccCCCChhhhhhhhhHHHHHhhc
Confidence 446777888888889999776 8999998888887654 446777888999999999999999999876655443333
Q ss_pred -cccCCCCCCCCC--------------------------------------------------------------C--CC
Q 027734 125 -QEKGGAGDGEGG--------------------------------------------------------------G--GG 139 (219)
Q Consensus 125 -~~~~~~~~~~~~--------------------------------------------------------------~--~~ 139 (219)
........+..+ + ..
T Consensus 198 ~~~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~v 277 (847)
T KOG0998|consen 198 NSEPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPKV 277 (847)
T ss_pred ccCCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCccc
Confidence 111000000000 0 12
Q ss_pred CCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHH
Q 027734 140 GADEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMK 210 (219)
Q Consensus 140 ~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~ 210 (219)
.......+..+|...|.+++|.|+-.+.+..+...| +....+..++...|..+.|.+++.+|.-.+.
T Consensus 278 sp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g----l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~ 344 (847)
T KOG0998|consen 278 SPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFG----LSKPRLAHVWLLADTQNTGTLSKDEFALAMH 344 (847)
T ss_pred ChHHHHHHHHHHHhccccCCCcccccccccccccCC----CChhhhhhhhhhcchhccCcccccccchhhh
Confidence 233455677789999999999999999999887755 4667899999999999999999998865543
No 111
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=96.28 E-value=0.051 Score=46.82 Aligned_cols=100 Identities=15% Similarity=0.189 Sum_probs=79.4
Q ss_pred CHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCccccCCCCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHH
Q 027734 88 TDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKGGAGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEEL 167 (219)
Q Consensus 88 ~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~ 167 (219)
....+..++...|.+++|.+++.+-..++...... ......+..|+..+..++|.+..+++
T Consensus 134 ~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~-------------------l~~~~~~~~f~e~~~~~~~k~~~~~~ 194 (746)
T KOG0169|consen 134 REHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQ-------------------LSESKARRLFKESDNSQTGKLEEEEF 194 (746)
T ss_pred HHHHHHHHHHHHccccccccchhhHHHHHHHHHHh-------------------hhHHHHHHHHHHHHhhccceehHHHH
Confidence 34567889999999999999999998888776555 55677888999999999999999999
Q ss_pred HHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHhC
Q 027734 168 GLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKAG 212 (219)
Q Consensus 168 ~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~ 212 (219)
+++....+..+ ++..+|..+-.+ .+.++.++++.++...
T Consensus 195 ~~~~~~~~~rp-----ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~ 233 (746)
T KOG0169|consen 195 VKFRKELTKRP-----EVYFLFVQYSHG-KEYLSTDDLLRFLEEE 233 (746)
T ss_pred HHHHHhhccCc-----hHHHHHHHHhCC-CCccCHHHHHHHHHHh
Confidence 99998887542 677777766544 7777777777776543
No 112
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=96.26 E-value=0.0042 Score=47.87 Aligned_cols=66 Identities=18% Similarity=0.246 Sum_probs=53.1
Q ss_pred HhhHHHHHhhhcCCCCCcccHHHHHHH---HHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHhCC
Q 027734 144 GDDLKDAFDVFDKDKDGLISVEELGLV---LSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKAGG 213 (219)
Q Consensus 144 ~~~~~~~F~~~D~~~~G~I~~~e~~~~---l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~ 213 (219)
...+...|..+|+|+++.|.+.|++-+ +.... ......+.++++-|.|+|.+|++.|++.++-..+
T Consensus 332 eRvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s----~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~ 400 (421)
T KOG4578|consen 332 ERVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKS----KPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEK 400 (421)
T ss_pred hheeeeeeeeecccccCccchhhcchHHHHHHhhc----cHHHHhhhcchhcccCCCceecHHHHhhhhcccc
Confidence 336677899999999999999987544 43333 2456889999999999999999999999986544
No 113
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=0.014 Score=47.60 Aligned_cols=70 Identities=21% Similarity=0.273 Sum_probs=60.9
Q ss_pred CCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHH
Q 027734 137 GGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMK 210 (219)
Q Consensus 137 ~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~ 210 (219)
+....+..+.+...|+.+-.|-.|+|+..--++++.+-.+ .-+|+..+++.-|.+.||.+++.||+..+.
T Consensus 223 w~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSkl----pi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 223 WQITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSKL----PIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred cccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhccC----chHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 4555667788889999999999999999999999977553 557999999999999999999999999875
No 114
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.00 E-value=0.013 Score=50.35 Aligned_cols=68 Identities=21% Similarity=0.396 Sum_probs=58.5
Q ss_pred ccHhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 027734 48 TSAYKKAELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYE 117 (219)
Q Consensus 48 ~~~~~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 117 (219)
+....+..++.+|+.+|+...|++|-.+-+.+|.+.+. +...+..+|..-|.|+||+++-+||+-.+.
T Consensus 189 Vp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~L--pq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 189 VPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSGL--PQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred ccchhhhHHHHHhhhcccccccccccHHHHHHHHhcCC--chhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 44556678899999999999999999999999877654 677888999999999999999999976554
No 115
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.20 E-value=0.06 Score=44.96 Aligned_cols=77 Identities=19% Similarity=0.302 Sum_probs=69.8
Q ss_pred CcccHhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCC
Q 027734 46 SRTSAYKKAELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGG 122 (219)
Q Consensus 46 ~~~~~~~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~ 122 (219)
-.+++++....+..|..+|.+..|+++..++..+++..+...+...++++....|.+-+|.+...||.+++......
T Consensus 585 i~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g 661 (680)
T KOG0042|consen 585 IKLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNG 661 (680)
T ss_pred cccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcC
Confidence 44788899999999999999999999999999999998888899999999999999999999999999998876544
No 116
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=94.78 E-value=0.32 Score=30.62 Aligned_cols=68 Identities=18% Similarity=0.292 Sum_probs=43.4
Q ss_pred hhHHHHHhhhcCCCCCcccHHHHHHHHHHc-------CCC--CCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHhCCcc
Q 027734 145 DDLKDAFDVFDKDKDGLISVEELGLVLSAL-------GLN--EGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKAGGVL 215 (219)
Q Consensus 145 ~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~-------~~~--~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~~ 215 (219)
++++-+|+.+ .|++|.++...+..+|... |-. -+-.+..++.-|... .....|+.++|+.++...|..
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ePq~ 79 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSEPQS 79 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT--TT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhCCCe
Confidence 5788899999 5789999999998888653 211 112455677777765 356789999999999998764
No 117
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=94.56 E-value=0.03 Score=43.36 Aligned_cols=66 Identities=20% Similarity=0.164 Sum_probs=53.6
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCccccCCCCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHH
Q 027734 91 EAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKGGAGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLV 170 (219)
Q Consensus 91 ~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~ 170 (219)
.+...|..+|.|.++.|...|+..+-..+... .......++.|+..|.|+|-.||.+|++..
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~------------------s~~rkC~rk~~~yCDlNkDKkISl~Ew~~C 395 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKK------------------SKPRKCSRKFFKYCDLNKDKKISLDEWRGC 395 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhh------------------ccHHHHhhhcchhcccCCCceecHHHHhhh
Confidence 46678889999999999888877665555444 456677889999999999999999999988
Q ss_pred HHHc
Q 027734 171 LSAL 174 (219)
Q Consensus 171 l~~~ 174 (219)
|...
T Consensus 396 L~~~ 399 (421)
T KOG4578|consen 396 LGVE 399 (421)
T ss_pred hccc
Confidence 8543
No 118
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=94.20 E-value=0.36 Score=34.17 Aligned_cols=71 Identities=24% Similarity=0.300 Sum_probs=56.8
Q ss_pred HhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCC---------------------------------------------
Q 027734 144 GDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNE--------------------------------------------- 178 (219)
Q Consensus 144 ~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~--------------------------------------------- 178 (219)
...+++-...+|.|+||.|.+-|--+-++.+|.+.
T Consensus 6 ~T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg 85 (174)
T PF05042_consen 6 MTVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSG 85 (174)
T ss_pred ccHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcc
Confidence 34567778889999999999999988887765421
Q ss_pred ------CCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHhCCc
Q 027734 179 ------GNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKAGGV 214 (219)
Q Consensus 179 ------~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~ 214 (219)
...++..+++|..+++...+.+++.|..+.+..+-.
T Consensus 86 ~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~ 127 (174)
T PF05042_consen 86 AYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRN 127 (174)
T ss_pred ccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccc
Confidence 134467899999999888899999999999887654
No 119
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=93.83 E-value=0.54 Score=33.00 Aligned_cols=62 Identities=19% Similarity=0.363 Sum_probs=46.8
Q ss_pred HHHHHh---cCCCCCcccHHHHHHHHHhhcc---cCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 027734 58 RVFATF---DKDGDGFITKTELVESLRNLRL---MVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGM 119 (219)
Q Consensus 58 ~~F~~~---D~~~~g~is~~el~~~l~~~~~---~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 119 (219)
.+|..+ -..+...++-..|..+++..++ .++..+++.+|.++...+...|+|++|...+..+
T Consensus 3 ~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 3 AVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 444444 3455678999999999998654 6889999999999877777789999999888754
No 120
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=93.82 E-value=0.62 Score=32.69 Aligned_cols=64 Identities=14% Similarity=0.308 Sum_probs=47.4
Q ss_pred HHHHhhh---cCCCCCcccHHHHHHHHHHcCCC-CCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHh
Q 027734 148 KDAFDVF---DKDKDGLISVEELGLVLSALGLN-EGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKA 211 (219)
Q Consensus 148 ~~~F~~~---D~~~~G~I~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 211 (219)
+.+|..| -..+...|+-..|..+|+..++- ..++...++-+|..+-..+..+|+|++|..+|..
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence 3455555 34566789999999999998762 3378899999999976666678999999999864
No 121
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=93.66 E-value=3 Score=37.30 Aligned_cols=127 Identities=13% Similarity=0.217 Sum_probs=87.0
Q ss_pred CCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhC--CCCCC-----cccHHHHHHHHHhhcCCCccccCCCCCCCCCC
Q 027734 65 KDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVD--ANGDG-----LIEFDEFCMLYEGMMGGDRQEKGGAGDGEGGG 137 (219)
Q Consensus 65 ~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d--~~~~g-----~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (219)
.+.+|.|....+...+..- -.+..++....... .+++. ..+++.|..++..+..+
T Consensus 159 vn~~grip~knI~k~F~~~---k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcpR--------------- 220 (1189)
T KOG1265|consen 159 VNFEGRIPVKNIIKTFSAD---KKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCPR--------------- 220 (1189)
T ss_pred ccccccccHHHHHHHhhcC---CchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCCc---------------
Confidence 4566777766555544331 12233443333332 22222 35667777777777554
Q ss_pred CCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCC--------CCcHHHHHHHHHHHcCCC----CCceeHHHH
Q 027734 138 GGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNE--------GNKIENCKKMIRKVDVDG----DGMVNFDEF 205 (219)
Q Consensus 138 ~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~--------~~~~~~~~~~~~~~d~~~----dg~i~~~eF 205 (219)
..+..+|..+..++.-++|.+++..++..-...+ ......+..+++.+..|. +|.++-+-|
T Consensus 221 -------~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf 293 (1189)
T KOG1265|consen 221 -------PEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGF 293 (1189)
T ss_pred -------hhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhh
Confidence 7889999999999889999999999997754322 246678999999997764 789999999
Q ss_pred HHHHHhCCccc
Q 027734 206 RRMMKAGGVLL 216 (219)
Q Consensus 206 ~~~l~~~~~~~ 216 (219)
++++......+
T Consensus 294 ~ryl~gdEn~i 304 (1189)
T KOG1265|consen 294 VRYLMGDENAI 304 (1189)
T ss_pred HHHhhCCcccc
Confidence 99999865543
No 122
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=92.68 E-value=0.23 Score=42.18 Aligned_cols=102 Identities=22% Similarity=0.296 Sum_probs=72.0
Q ss_pred CcccHhHHHHHHHHHHHh-----------cCCCC---CcccHHHHHHHHHhhcc-cCCHHHHHHHHHhhCCCCCCcccHH
Q 027734 46 SRTSAYKKAELKRVFATF-----------DKDGD---GFITKTELVESLRNLRL-MVTDMEAEEMVAKVDANGDGLIEFD 110 (219)
Q Consensus 46 ~~~~~~~~~~~~~~F~~~-----------D~~~~---g~is~~el~~~l~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~ 110 (219)
..++..+...+..+|..- |++-+ .+|+.+.+..++..+.. ..+..-..++|+..|.+.+|.++|.
T Consensus 496 ~~lt~~dL~~lYd~f~~e~~~~~~~~~~~~p~~~~~eqyi~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~ 575 (671)
T KOG4347|consen 496 TSLTNTDLENLYDLFKEEHLTNSIGLGRSDPDFEAFEQYIDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFK 575 (671)
T ss_pred CccCHHHHHHHHHHHHHHHhccCcccCCCCCCchHHHHHHHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHH
Confidence 446666777777766532 11111 12444445555544322 2344557889999999999999999
Q ss_pred HHHHHHHhhcCCCccccCCCCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHH
Q 027734 111 EFCMLYEGMMGGDRQEKGGAGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEEL 167 (219)
Q Consensus 111 eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~ 167 (219)
+++..+...... ...+.+.-.|+.+|...+ ....+|.
T Consensus 576 ~lv~gL~~l~~~-------------------~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 576 DLVSGLSILKAG-------------------DALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHHhh-------------------hHHHHHHHHHhhccCCcc-ccccccc
Confidence 999998877666 677889999999999998 8888887
No 123
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=92.30 E-value=0.33 Score=40.78 Aligned_cols=69 Identities=22% Similarity=0.327 Sum_probs=60.0
Q ss_pred CChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHh
Q 027734 141 ADEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKA 211 (219)
Q Consensus 141 ~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 211 (219)
+......+..|..+|.++.|+++.++..++++..+ .+++++...+..+..|.+.+|.+...||.+.+..
T Consensus 589 ~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~--~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 589 PEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSEN--VGWDEDRLHEELQEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHH
Confidence 44556667889999999999999999999999988 4568899999999999999999999999887653
No 124
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=92.18 E-value=0.26 Score=41.92 Aligned_cols=78 Identities=22% Similarity=0.313 Sum_probs=57.1
Q ss_pred ccHHHHHHHHHhhcCCCccccCCCCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHH
Q 027734 107 IEFDEFCMLYEGMMGGDRQEKGGAGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCK 186 (219)
Q Consensus 107 i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~ 186 (219)
++|+.|...+.....+ .....-..++|..+|.+.+|.|+..++...+..+.... .-+.+.
T Consensus 535 i~~~~f~~~f~~l~pw------------------~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~--~~ek~~ 594 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPW------------------AVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGD--ALEKLK 594 (671)
T ss_pred HHHhhHHHHhhccCch------------------hHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhh--HHHHHH
Confidence 5556666666655555 34556678899999999999999999999998875432 335677
Q ss_pred HHHHHHcCCCCCceeHHHH
Q 027734 187 KMIRKVDVDGDGMVNFDEF 205 (219)
Q Consensus 187 ~~~~~~d~~~dg~i~~~eF 205 (219)
-+|+.+|.+.+ ..+.++-
T Consensus 595 l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 595 LLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHhhccCCcc-ccccccc
Confidence 88888888877 6665543
No 125
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=91.56 E-value=0.1 Score=31.06 Aligned_cols=56 Identities=14% Similarity=0.303 Sum_probs=36.9
Q ss_pred hHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcC-------CCCCceeHHHHHHH
Q 027734 143 EGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDV-------DGDGMVNFDEFRRM 208 (219)
Q Consensus 143 ~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~-------~~dg~i~~~eF~~~ 208 (219)
..+.+..+|+.+ .++.++||.+|+++.|..- .++-....+.. ...|..+|..|.+-
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~pe---------~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~ 66 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLTPE---------QAEYCISRMPPYEGPDGDAIPGAYDYESFTNS 66 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS-CC---------CHHHHHCCSEC--SSS----TTEEECHHHHCC
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcCcH---------HHHHHHHHCcccCCCCcCCCCCCcCHHHHHHH
Confidence 447889999999 5677999999999886332 22333333321 12377999988753
No 126
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=91.39 E-value=0.73 Score=35.77 Aligned_cols=68 Identities=22% Similarity=0.392 Sum_probs=47.8
Q ss_pred hHHHHHhhhcCCCCCcccHHHHHHHHHHcC---CCCCCcHHH-----------HHHHHHHHcCCCCCceeHHHHHHHHHh
Q 027734 146 DLKDAFDVFDKDKDGLISVEELGLVLSALG---LNEGNKIEN-----------CKKMIRKVDVDGDGMVNFDEFRRMMKA 211 (219)
Q Consensus 146 ~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~---~~~~~~~~~-----------~~~~~~~~d~~~dg~i~~~eF~~~l~~ 211 (219)
..+..|...|.|+||+++..|+..++...- ..+...+.. -..+++..|.|.|.-|+.+||++.-.+
T Consensus 245 dPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 245 DPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred CcchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhh
Confidence 345667788999999999999988875420 011112111 345778899999999999999987555
Q ss_pred CC
Q 027734 212 GG 213 (219)
Q Consensus 212 ~~ 213 (219)
..
T Consensus 325 ke 326 (442)
T KOG3866|consen 325 KE 326 (442)
T ss_pred cc
Confidence 43
No 127
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=91.00 E-value=0.32 Score=37.61 Aligned_cols=62 Identities=27% Similarity=0.403 Sum_probs=44.3
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHh-h---ccc-CCHHH-----------HHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 027734 58 RVFATFDKDGDGFITKTELVESLRN-L---RLM-VTDME-----------AEEMVAKVDANGDGLIEFDEFCMLYEGM 119 (219)
Q Consensus 58 ~~F~~~D~~~~g~is~~el~~~l~~-~---~~~-~~~~~-----------~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 119 (219)
-.|...|.|+||.++..|+.+++.. + ..+ ..+.+ -..+++..|.|.|..|+.+||+......
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~k 325 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNK 325 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhc
Confidence 3466778899999999999998754 2 111 11111 1236778899999999999999876543
No 128
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=90.91 E-value=0.63 Score=39.38 Aligned_cols=99 Identities=17% Similarity=0.147 Sum_probs=63.9
Q ss_pred HHHHHHhhccchHHHHHHHHHHhcccCCCCCCCcccHhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcccC----CH
Q 027734 14 AGFINIFVYFPTKKFYAWIQSFFSKTATTTGESRTSAYKKAELKRVFATFDKDGDGFITKTELVESLRNLRLMV----TD 89 (219)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~----~~ 89 (219)
++++..++|...-++..-+....- ...-.....+++.-.+.+..+|..+|.++||.++..|+..++....-.+ ..
T Consensus 276 W~iLR~fgY~DsleL~~~~l~p~~-~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~ 354 (625)
T KOG1707|consen 276 WTILRKFGYTDSLELTDEYLPPRL-KVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPY 354 (625)
T ss_pred hhhhhhcCCcchhhhhhhhcCccc-cCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcc
Confidence 567777777766665543322100 0011122457778888999999999999999999999999988764332 11
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 027734 90 MEAEEMVAKVDANGDGLIEFDEFCMLYEGM 119 (219)
Q Consensus 90 ~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 119 (219)
.+. --.+..|.+++.-|+..|...
T Consensus 355 ~~~------t~~~~~G~ltl~g~l~~WsL~ 378 (625)
T KOG1707|consen 355 KDS------TVKNERGWLTLNGFLSQWSLM 378 (625)
T ss_pred ccc------ceecccceeehhhHHHHHHHH
Confidence 110 012356889999998777543
No 129
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=90.87 E-value=0.52 Score=43.93 Aligned_cols=57 Identities=19% Similarity=0.500 Sum_probs=48.6
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 027734 59 VFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLY 116 (219)
Q Consensus 59 ~F~~~D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 116 (219)
.|+.+|+++.|.|+..+|..++..- ...+..+++.+++-...+.+..++|++|+.-+
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 4778999999999999999998753 34678889999998888889999999998654
No 130
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.82 E-value=0.53 Score=42.37 Aligned_cols=152 Identities=20% Similarity=0.243 Sum_probs=107.7
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCcccc----C-
Q 027734 54 AELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEK----G- 128 (219)
Q Consensus 54 ~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~----~- 128 (219)
..+..+|+..|..++|.|+-.+....+..-+. ....+..+|...|..+.|.++..+|...++.......... .
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~L--~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~~~~~~~ 88 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSKSGL--PDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGRELSAKKV 88 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhcccc--chhhhhccccccccccCCccccccccccchHhhhhhcccCcCcccc
Confidence 56778899999999999999999998877654 6788888999999999999999999766554322211111 0
Q ss_pred -C-----------------------CCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHH
Q 027734 129 -G-----------------------AGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIEN 184 (219)
Q Consensus 129 -~-----------------------~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~ 184 (219)
. .....................|+..... .|.++.+..+-++..-.+ ....
T Consensus 89 ~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~L----p~~~ 163 (847)
T KOG0998|consen 89 LPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSKL----PSDV 163 (847)
T ss_pred ccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCCC----Chhh
Confidence 0 0001111112223345566678887764 899999998888866553 4456
Q ss_pred HHHHHHHHcCCCCCceeHHHHHHHHHhC
Q 027734 185 CKKMIRKVDVDGDGMVNFDEFRRMMKAG 212 (219)
Q Consensus 185 ~~~~~~~~d~~~dg~i~~~eF~~~l~~~ 212 (219)
+-.++...|.+.+|.++..||.-.+.-.
T Consensus 164 l~~iw~l~d~d~~g~Ld~~ef~~am~l~ 191 (847)
T KOG0998|consen 164 LGRIWELSDIDKDGNLDRDEFAVAMHLI 191 (847)
T ss_pred hccccccccccccCCCChhhhhhhhhHH
Confidence 6678888999999999999998777643
No 131
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=90.81 E-value=0.51 Score=43.97 Aligned_cols=59 Identities=15% Similarity=0.357 Sum_probs=49.6
Q ss_pred HHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHh
Q 027734 150 AFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKA 211 (219)
Q Consensus 150 ~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 211 (219)
-|+.||.|+.|.|+..+|..++..-. +.+..+++-++.-...|.+...+|++|+.-+..
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k---~ytqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHK---HYTQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhccc---cchhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 47788999999999999998885433 458889999988888889999999999987653
No 132
>PLN02228 Phosphoinositide phospholipase C
Probab=89.46 E-value=3.4 Score=35.44 Aligned_cols=69 Identities=17% Similarity=0.365 Sum_probs=54.0
Q ss_pred ChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCC----CCCceeHHHHHHHHHhC
Q 027734 142 DEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVD----GDGMVNFDEFRRMMKAG 212 (219)
Q Consensus 142 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~----~dg~i~~~eF~~~l~~~ 212 (219)
...+.+..+|..+.. ++.|+.++|.++|.........+.+.+..++..+... ..|.++.+.|..++...
T Consensus 21 ~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 21 EPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 456789999999974 3689999999999987654445667788898887543 34679999999999764
No 133
>PLN02222 phosphoinositide phospholipase C 2
Probab=89.41 E-value=1.9 Score=36.97 Aligned_cols=68 Identities=15% Similarity=0.317 Sum_probs=54.1
Q ss_pred hHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcC-CCCCceeHHHHHHHHHhC
Q 027734 143 EGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDV-DGDGMVNFDEFRRMMKAG 212 (219)
Q Consensus 143 ~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~-~~dg~i~~~eF~~~l~~~ 212 (219)
....+..+|..+.. ++.++.++|.++|.........+.+.+..+++.+.. ...+.++++.|.++|...
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 44588999999974 479999999999998876544577888888887632 246679999999999864
No 134
>PLN02952 phosphoinositide phospholipase C
Probab=87.91 E-value=7.9 Score=33.54 Aligned_cols=88 Identities=7% Similarity=0.022 Sum_probs=59.9
Q ss_pred CCCcccHHHHHHHHHhhcc--cCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCccccCCCCCCCCCCCCCCChH
Q 027734 67 GDGFITKTELVESLRNLRL--MVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKGGAGDGEGGGGGGADEG 144 (219)
Q Consensus 67 ~~g~is~~el~~~l~~~~~--~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (219)
+.|.+++.++..+.+.+.. .....++..+|..+..+ .+.++.++|..++....... ....
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e~-----------------~~~~ 74 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDEL-----------------DCTL 74 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCc-----------------CCCH
Confidence 4689999999887776643 23678999999999654 46899999999998765431 1222
Q ss_pred hhHHHHHhhh-------cCCCCCcccHHHHHHHHH
Q 027734 145 DDLKDAFDVF-------DKDKDGLISVEELGLVLS 172 (219)
Q Consensus 145 ~~~~~~F~~~-------D~~~~G~I~~~e~~~~l~ 172 (219)
+....++..+ ...+.+.++.+.|..+|-
T Consensus 75 ~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 75 AEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred HHHHHHHHHHHhhccccccccccCcCHHHHHHHHc
Confidence 3334444332 112335689999988885
No 135
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=87.87 E-value=2.1 Score=38.37 Aligned_cols=74 Identities=26% Similarity=0.168 Sum_probs=56.5
Q ss_pred ChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHH---cCCCCCceeHHHHHHHHHhCCcc
Q 027734 142 DEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKV---DVDGDGMVNFDEFRRMMKAGGVL 215 (219)
Q Consensus 142 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~---d~~~dg~i~~~eF~~~l~~~~~~ 215 (219)
.....++..|..++....|.++.+++.+++-.+|.+....+.-+.+++... |.+.-|.+++.+|..+|.+.-..
T Consensus 744 ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~ 820 (890)
T KOG0035|consen 744 YVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYED 820 (890)
T ss_pred HHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhh
Confidence 446688899999999999999999999999999977533233344554444 44455899999999999876553
No 136
>PLN02230 phosphoinositide phospholipase C 4
Probab=87.53 E-value=4.9 Score=34.74 Aligned_cols=70 Identities=16% Similarity=0.279 Sum_probs=51.8
Q ss_pred ChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCC-CCCCcHHHHHHHHHHHcC-------CCCCceeHHHHHHHHHhC
Q 027734 142 DEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGL-NEGNKIENCKKMIRKVDV-------DGDGMVNFDEFRRMMKAG 212 (219)
Q Consensus 142 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~d~-------~~dg~i~~~eF~~~l~~~ 212 (219)
.....++.+|..+..++ +.++.++|.++|..... ....+.+++..++..+-. -..+.++.+.|..++...
T Consensus 26 ~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s~ 103 (598)
T PLN02230 26 GPVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFST 103 (598)
T ss_pred CCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcCc
Confidence 45578999999997544 89999999999998773 223456677777765421 134569999999999764
No 137
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=87.18 E-value=3.9 Score=26.30 Aligned_cols=84 Identities=21% Similarity=0.208 Sum_probs=52.7
Q ss_pred CCCcccHHHHHHHHHhhc--ccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCccccCCCCCCCCCCCCCCChH
Q 027734 67 GDGFITKTELVESLRNLR--LMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKGGAGDGEGGGGGGADEG 144 (219)
Q Consensus 67 ~~g~is~~el~~~l~~~~--~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (219)
.||.++..|...+-.-+. .+++..+...+...+........++.+|...+...... ....
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~r~ 73 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDY------------------EERL 73 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCH------------------HHHH
Confidence 378888887666554322 24567777777777766556668899998887754322 2334
Q ss_pred hhHHHHHhhhcCCCCCcccHHHHHHH
Q 027734 145 DDLKDAFDVFDKDKDGLISVEELGLV 170 (219)
Q Consensus 145 ~~~~~~F~~~D~~~~G~I~~~e~~~~ 170 (219)
.-+..+|...-. ||.++..|-.-+
T Consensus 74 ~~l~~L~~vA~A--DG~~~~~E~~~l 97 (104)
T cd07313 74 ELVEALWEVAYA--DGELDEYEEHLI 97 (104)
T ss_pred HHHHHHHHHHHh--cCCCCHHHHHHH
Confidence 455556666553 577887775433
No 138
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=84.75 E-value=3.4 Score=28.39 Aligned_cols=71 Identities=11% Similarity=0.166 Sum_probs=39.6
Q ss_pred CCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCC-------CCCCcccHHHHHHHHHhhcCCCccccCCCCCCCCCCCCC
Q 027734 68 DGFITKTELVESLRNLRLMVTDMEAEEMVAKVDA-------NGDGLIEFDEFCMLYEGMMGGDRQEKGGAGDGEGGGGGG 140 (219)
Q Consensus 68 ~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~-------~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (219)
-+.||+.||.++-+=+.. +...+.+++..|.. +..+.|+|+-|..++...+..
T Consensus 5 ~~~lsp~eF~qLq~y~ey--s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~------------------ 64 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSEY--STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEV------------------ 64 (138)
T ss_dssp -S-S-HHHHHHHHHHHHH------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-------------------
T ss_pred eeccCHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcC------------------
Confidence 367888888875544433 44566667766632 334689999999999988776
Q ss_pred CChHhhHHHHHhhhcCCC
Q 027734 141 ADEGDDLKDAFDVFDKDK 158 (219)
Q Consensus 141 ~~~~~~~~~~F~~~D~~~ 158 (219)
....+-.+.+|..|-...
T Consensus 65 d~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 65 DLPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp S--HHHHHHHHHHS----
T ss_pred CCCHHHHHHHHHHHhCcc
Confidence 455567778888876543
No 139
>PLN02223 phosphoinositide phospholipase C
Probab=83.99 E-value=6.8 Score=33.34 Aligned_cols=70 Identities=10% Similarity=0.051 Sum_probs=52.6
Q ss_pred ChHhhHHHHHhhhcCCCCCcccHHHHHHHH---HHcCCCCCCcHHHHHHHHHHHcCC--------CCCceeHHHHHHHHH
Q 027734 142 DEGDDLKDAFDVFDKDKDGLISVEELGLVL---SALGLNEGNKIENCKKMIRKVDVD--------GDGMVNFDEFRRMMK 210 (219)
Q Consensus 142 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l---~~~~~~~~~~~~~~~~~~~~~d~~--------~dg~i~~~eF~~~l~ 210 (219)
...+.++.+|..+. .+.|.++.+.+.+++ .........+.++++.+++.+-.. ..+.++.+.|.+++.
T Consensus 13 ~~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~ 91 (537)
T PLN02223 13 NQPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLF 91 (537)
T ss_pred CCcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhc
Confidence 45578999999995 578999999999999 555544445677777777765322 125699999999998
Q ss_pred hC
Q 027734 211 AG 212 (219)
Q Consensus 211 ~~ 212 (219)
..
T Consensus 92 s~ 93 (537)
T PLN02223 92 ST 93 (537)
T ss_pred Cc
Confidence 74
No 140
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=82.85 E-value=14 Score=33.07 Aligned_cols=150 Identities=16% Similarity=0.242 Sum_probs=87.0
Q ss_pred ccHhHHH-HHHHHHHHhcCCCCCcccHHHHHHHHHhhcccCCHHH-HHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCcc
Q 027734 48 TSAYKKA-ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDME-AEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQ 125 (219)
Q Consensus 48 ~~~~~~~-~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~~~-~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~ 125 (219)
+++.++. .+++-+...|......|+..+++..+.+.....+... +.+-+.. |.-+.+.++|++|..++...+-....
T Consensus 137 ~~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~te-d~~~k~dlsf~~f~~ly~~lmfs~~~ 215 (1267)
T KOG1264|consen 137 PTPLQIERWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTE-DGARKDDLSFEQFHLLYKKLMFSQQK 215 (1267)
T ss_pred CChHHHHHHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhH-hhhccccccHHHHHHHHHHHhhccch
Confidence 4455554 4456677778777778999999999988777655433 2233332 33346789999999998877654111
Q ss_pred ccCCCCCCCCCCCCCCChHhhHHHHHhh--hcCCCCCcccHHHHHHHHHHcCCCCCCcH-HHHHHHHHHHcCC-----CC
Q 027734 126 EKGGAGDGEGGGGGGADEGDDLKDAFDV--FDKDKDGLISVEELGLVLSALGLNEGNKI-ENCKKMIRKVDVD-----GD 197 (219)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~--~D~~~~G~I~~~e~~~~l~~~~~~~~~~~-~~~~~~~~~~d~~-----~d 197 (219)
. ........|-. -+...--.++..||+++|.......--++ ..+..++..+-.| ..
T Consensus 216 a----------------~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~E 279 (1267)
T KOG1264|consen 216 A----------------ILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAE 279 (1267)
T ss_pred h----------------hhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccC
Confidence 1 01111111111 11112246899999999865432210011 1344455444222 35
Q ss_pred CceeHHHHHHHHHhCCc
Q 027734 198 GMVNFDEFRRMMKAGGV 214 (219)
Q Consensus 198 g~i~~~eF~~~l~~~~~ 214 (219)
..+...||+.++-..+.
T Consensus 280 Pyl~v~EFv~fLFSreN 296 (1267)
T KOG1264|consen 280 PYLFVDEFVTFLFSREN 296 (1267)
T ss_pred cceeHHHHHHHHhhccc
Confidence 57999999999877654
No 141
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=81.81 E-value=1.4 Score=29.03 Aligned_cols=33 Identities=18% Similarity=0.406 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 027734 87 VTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGM 119 (219)
Q Consensus 87 ~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 119 (219)
+++++++.+|+.+-.|..|+|.|.||+.-+..-
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~e 36 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSSE 36 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT---
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcccc
Confidence 588999999999999999999999999877644
No 142
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=80.62 E-value=1.7 Score=28.58 Aligned_cols=32 Identities=16% Similarity=0.346 Sum_probs=23.5
Q ss_pred CcHHHHHHHHHHHcCCCCCceeHHHHHHHHHh
Q 027734 180 NKIENCKKMIRKVDVDGDGMVNFDEFRRMMKA 211 (219)
Q Consensus 180 ~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 211 (219)
+++++++.++..+-.|..|+|.|.||+.-+..
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 58899999999999999999999999987653
No 143
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=80.18 E-value=12 Score=23.58 Aligned_cols=63 Identities=13% Similarity=0.161 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhh-------c----ccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 027734 54 AELKRVFATFDKDGDGFITKTELVESLRNL-------R----LMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGM 119 (219)
Q Consensus 54 ~~~~~~F~~~D~~~~g~is~~el~~~l~~~-------~----~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 119 (219)
+.++.+|..+ .|++|.++...|..+|..+ + +...+.-++..|... .....|+.++|+.++...
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT-
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhC
Confidence 4678889999 8889999999999988753 2 123455666667665 245689999999998744
No 144
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=79.72 E-value=12 Score=23.95 Aligned_cols=61 Identities=18% Similarity=0.377 Sum_probs=41.0
Q ss_pred HhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcC---CCCCceeHHHHHHHHHh
Q 027734 144 GDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDV---DGDGMVNFDEFRRMMKA 211 (219)
Q Consensus 144 ~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~---~~dg~i~~~eF~~~l~~ 211 (219)
...+.+-|..+.. +|+|+++.|-.++ |+.. +++-+.++|..+-. -....|+.+|...+..+
T Consensus 29 W~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~d--SkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~q 92 (100)
T PF08414_consen 29 WKEVEKRFDKLAK--DGLLPRSDFGECI---GMKD--SKEFAGELFDALARRRGIKGDSITKDELKEFWEQ 92 (100)
T ss_dssp HHHHHHHHHHH-B--TTBEEGGGHHHHH---T--S---HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCc--CCcccHHHHHHhc---CCcc--cHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHH
Confidence 4567888999887 8999999998776 6543 67777777776642 22568999988877643
No 145
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=79.55 E-value=22 Score=27.54 Aligned_cols=54 Identities=9% Similarity=0.124 Sum_probs=32.8
Q ss_pred CCCCcccHHHHHHHHHhh--cccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhc
Q 027734 66 DGDGFITKTELVESLRNL--RLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMM 120 (219)
Q Consensus 66 ~~~g~is~~el~~~l~~~--~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~ 120 (219)
..||.+|..|.. ....+ ...++.+.-......+........++++|+..+....
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~ 122 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSVC 122 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHh
Confidence 458999999987 33332 1234555533333333333444588999998887654
No 146
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=77.91 E-value=14 Score=22.98 Aligned_cols=68 Identities=16% Similarity=0.135 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCccccCCCCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHH
Q 027734 87 VTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKGGAGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEE 166 (219)
Q Consensus 87 ~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e 166 (219)
+++.+...+++..-.++ -.|.+.+|...+...... ........+=..+|.-.+|+||.-|
T Consensus 4 ITK~eA~~FW~~~Fg~r-~IVPW~~F~~~L~~~h~~-------------------~~~~~~~aLk~TiDlT~n~~iS~Fe 63 (85)
T PF02761_consen 4 ITKAEAAEFWKTSFGKR-TIVPWSEFRQALQKVHPI-------------------SSGLEAMALKSTIDLTCNDYISNFE 63 (85)
T ss_dssp -SSHHHHHHHHHHHTT--SEEEHHHHHHHHHHHS---------------------SSHHHHHHHHHHH-TTSSSEEEHHH
T ss_pred eccHHHHHHHHHHCCCC-eEeeHHHHHHHHHHhcCC-------------------CchHHHHHHHHHHhcccCCccchhh
Confidence 45566666666554333 457777777777766544 2222333444556777777777777
Q ss_pred HHHHHHHc
Q 027734 167 LGLVLSAL 174 (219)
Q Consensus 167 ~~~~l~~~ 174 (219)
|--+.+-.
T Consensus 64 FdvFtRlF 71 (85)
T PF02761_consen 64 FDVFTRLF 71 (85)
T ss_dssp HHHHHHHT
T ss_pred hHHHHHHH
Confidence 75555443
No 147
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=77.00 E-value=3.7 Score=26.36 Aligned_cols=53 Identities=19% Similarity=0.250 Sum_probs=33.0
Q ss_pred CCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHh
Q 027734 159 DGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKA 211 (219)
Q Consensus 159 ~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 211 (219)
||.++.+|...+-..+.-..+++.++...++..+....+...++.+|.+-+..
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 67788887766554432212346666777776666555556777777777654
No 148
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=76.16 E-value=14 Score=21.97 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=34.2
Q ss_pred ccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 027734 71 ITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGM 119 (219)
Q Consensus 71 is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 119 (219)
++.+++..++...+...+..++..+++.-+..+--.++-+.+..++.++
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~GL 62 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFLNGL 62 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHHHHH
Confidence 4456777888888888888888888887665555556666666666544
No 149
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=74.40 E-value=2.2 Score=30.99 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=41.2
Q ss_pred HHHhhhcCC-CCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHH
Q 027734 149 DAFDVFDKD-KDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMK 210 (219)
Q Consensus 149 ~~F~~~D~~-~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~ 210 (219)
..|-.+|.. .||++|..|+.-+-. ++-..+..+..+|...|.|+||.|++.||..++.
T Consensus 191 wqf~qld~~p~d~~~sh~el~pl~a----p~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 191 WQFGQLDQHPIDGYLSHTELAPLRA----PLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred eeeccccCCCccccccccccccccC----CcccHHhhchhhhhcccCCCCCceeHHHhhcccC
Confidence 345566654 489999998743322 2222455678899999999999999999987764
No 150
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=73.02 E-value=4.9 Score=27.60 Aligned_cols=50 Identities=14% Similarity=0.241 Sum_probs=30.2
Q ss_pred CCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcC-------CCCCceeHHHHHHHHHh
Q 027734 158 KDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDV-------DGDGMVNFDEFRRMMKA 211 (219)
Q Consensus 158 ~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~-------~~dg~i~~~eF~~~l~~ 211 (219)
+.+.||.+||.++-+-... +...+..+++.+.. +.++.|+|+.|..+|..
T Consensus 4 ~~~~lsp~eF~qLq~y~ey----s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~ 60 (138)
T PF14513_consen 4 EWVSLSPEEFAQLQKYSEY----STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKT 60 (138)
T ss_dssp --S-S-HHHHHHHHHHHHH--------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHH
T ss_pred ceeccCHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHH
Confidence 5678999999888766543 22367777777643 24568999999999874
No 151
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=72.88 E-value=5.6 Score=23.70 Aligned_cols=53 Identities=19% Similarity=0.416 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCC-------CCCCcccHHHHHH
Q 027734 54 AELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDA-------NGDGLIEFDEFCM 114 (219)
Q Consensus 54 ~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~-------~~~g~i~~~eF~~ 114 (219)
+.+...|+.+ .++.++||.+||+..|. .+.++.+...... ...|..+|..|+.
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l~-------pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSLT-------PEQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS--------CCCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHcC-------cHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 4677889999 78889999999999753 2333444433321 1236688887764
No 152
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=72.38 E-value=61 Score=29.00 Aligned_cols=136 Identities=14% Similarity=0.133 Sum_probs=83.3
Q ss_pred HHHHHHHHhcCC-CCCcccHHHHHHHHHhh--------cc----cC-CHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhc
Q 027734 55 ELKRVFATFDKD-GDGFITKTELVESLRNL--------RL----MV-TDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMM 120 (219)
Q Consensus 55 ~~~~~F~~~D~~-~~g~is~~el~~~l~~~--------~~----~~-~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~ 120 (219)
....+|.+++-. ++..+...+....|..+ +. ++ -+.-+..+++.||...+|+|..-+|.-.+..+.
T Consensus 421 l~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~i~lc 500 (966)
T KOG4286|consen 421 LALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGIISLC 500 (966)
T ss_pred HHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhHHHHh
Confidence 345667777655 34455555544444321 11 00 123357789999999999999999987776664
Q ss_pred CCCccccCCCCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHH-------HHc------CCCCCCcHHHHHH
Q 027734 121 GGDRQEKGGAGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVL-------SAL------GLNEGNKIENCKK 187 (219)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l-------~~~------~~~~~~~~~~~~~ 187 (219)
.. ...+.++-+|......++-.+ ...+..+| +.+ |.+ ++. -.++.
T Consensus 501 k~-------------------~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGgs-Nve-psvrs 558 (966)
T KOG4286|consen 501 KA-------------------HLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGGS-NIE-PSVRS 558 (966)
T ss_pred cc-------------------hhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcCC-CCC-hHHHH
Confidence 44 666788899999886554333 44443333 222 322 111 24455
Q ss_pred HHHHHcCCCCCceeHHHHHHHHHhCCc
Q 027734 188 MIRKVDVDGDGMVNFDEFRRMMKAGGV 214 (219)
Q Consensus 188 ~~~~~d~~~dg~i~~~eF~~~l~~~~~ 214 (219)
-|+ ..++-..|+..+|..++...|.
T Consensus 559 CF~--~v~~~pei~~~~f~dw~~~epq 583 (966)
T KOG4286|consen 559 CFQ--FVNNKPEIEAALFLDWMRLEPQ 583 (966)
T ss_pred HHH--hcCCCCcchHHHHHHHhccCcc
Confidence 555 3456778999999999887765
No 153
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=72.15 E-value=15 Score=24.90 Aligned_cols=87 Identities=15% Similarity=0.061 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHhhCCCC--CCcccHHHHHHHHHhhcCCCccccCCCCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccH
Q 027734 87 VTDMEAEEMVAKVDANG--DGLIEFDEFCMLYEGMMGGDRQEKGGAGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISV 164 (219)
Q Consensus 87 ~~~~~~~~~~~~~d~~~--~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~ 164 (219)
.+-..+..+|+....+. |..++..+....+..++.......+.....+. .+...-..--+..++..||.+.+|.|+.
T Consensus 38 v~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~-~~v~~a~~L~ln~Ll~vyD~~rtG~I~v 116 (127)
T PF09068_consen 38 VDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPS-RPVDLAVDLLLNWLLNVYDSQRTGKIRV 116 (127)
T ss_dssp --HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH------HHHHHHHHHHHHHH-TT--SEEEH
T ss_pred eeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCc-hhHHHHHHHHHHHHHHHhCCCCCCeeeh
Confidence 34456667777765544 46789999888887776221111111000000 0000112234456677888888888888
Q ss_pred HHHHHHHHHc
Q 027734 165 EELGLVLSAL 174 (219)
Q Consensus 165 ~e~~~~l~~~ 174 (219)
-.++.++..+
T Consensus 117 ls~KvaL~~L 126 (127)
T PF09068_consen 117 LSFKVALITL 126 (127)
T ss_dssp HHHHHHHHHT
T ss_pred hHHHHHHHHh
Confidence 8887776543
No 154
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=70.71 E-value=25 Score=29.51 Aligned_cols=67 Identities=15% Similarity=0.210 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHh----hCCCCCCcccHHHHHHHHHhh
Q 027734 51 YKKAELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAK----VDANGDGLIEFDEFCMLYEGM 119 (219)
Q Consensus 51 ~~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~----~d~~~~g~i~~~eF~~~~~~~ 119 (219)
+....+..++ .+-....+.-|.+||...+......+. ..+..++.. +-....+...++..++++.-+
T Consensus 286 ~~~~~i~~ly-~~~~~~~~~pt~eEF~e~v~~~~p~L~-~~~~~~~~~~~V~hQaK~~~e~~lEkIiAf~aL~ 356 (445)
T PF13608_consen 286 KEEDEIEHLY-MLCKKHGKLPTEEEFLEYVEEVNPELL-EFAEEMIEEEEVEHQAKTASEKNLEKIIAFVALL 356 (445)
T ss_pred HHHHHHHHHH-HHHHHhCCCCCHHHHHHHHHhcCchHH-HHHHHHhCCCcEEecCCChHHHHHHHHHHHHHHH
Confidence 3445667777 666666789999999999986543221 112222211 111223456666666655443
No 155
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=70.69 E-value=18 Score=23.24 Aligned_cols=61 Identities=21% Similarity=0.191 Sum_probs=40.5
Q ss_pred hhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHH---HHHHHHcCCCCCceeHHHHHHHHHhCCcccc
Q 027734 153 VFDKDKDGLISVEELGLVLSALGLNEGNKIENCK---KMIRKVDVDGDGMVNFDEFRRMMKAGGVLLT 217 (219)
Q Consensus 153 ~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~---~~~~~~d~~~dg~i~~~eF~~~l~~~~~~~~ 217 (219)
..|.. ....+.+++..++...+.. .++-+. ..++..+......++.+|+++.+...|.+++
T Consensus 28 ~idi~-~~~~~~~~l~~~~~~~~~~---~~~li~~~~~~~~~l~~~~~~~ls~~e~~~~l~~~p~Lik 91 (105)
T cd02977 28 FIDYL-KEPPTKEELKELLAKLGLG---VEDLFNTRGTPYRKLGLADKDELSDEEALELMAEHPKLIK 91 (105)
T ss_pred EEeec-cCCCCHHHHHHHHHhcCCC---HHHHHhcCCchHHHcCCccccCCCHHHHHHHHHhCcCeee
Confidence 34443 4568889999999888732 222222 3444444433467899999999999999875
No 156
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=70.32 E-value=23 Score=22.03 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=39.8
Q ss_pred CcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 027734 69 GFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGM 119 (219)
Q Consensus 69 g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 119 (219)
..||..||..+.++-+.+++...+..+....-.++-...+-++=..++..+
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkei 63 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEI 63 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 468999999999999999999999999988876665666666555555443
No 157
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=69.75 E-value=1.9 Score=31.25 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=26.1
Q ss_pred CChHhhHHHHHhhhcCCCCCcccHHHHHHHH
Q 027734 141 ADEGDDLKDAFDVFDKDKDGLISVEELGLVL 171 (219)
Q Consensus 141 ~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l 171 (219)
-+......+.|...|.|+||+|+.+|+...+
T Consensus 218 ipme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 218 IPMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred ccHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 4556778899999999999999999986554
No 158
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=69.61 E-value=8.1 Score=17.07 Aligned_cols=15 Identities=33% Similarity=0.587 Sum_probs=8.5
Q ss_pred cCCCCCcccHHHHHH
Q 027734 64 DKDGDGFITKTELVE 78 (219)
Q Consensus 64 D~~~~g~is~~el~~ 78 (219)
|.|+||.|+.-++..
T Consensus 1 DvN~DG~vna~D~~~ 15 (21)
T PF00404_consen 1 DVNGDGKVNAIDLAL 15 (21)
T ss_dssp -TTSSSSSSHHHHHH
T ss_pred CCCCCCcCCHHHHHH
Confidence 456666666665544
No 159
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.82 E-value=18 Score=27.68 Aligned_cols=68 Identities=18% Similarity=0.231 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHh-cCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 027734 52 KKAELKRVFATF-DKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGM 119 (219)
Q Consensus 52 ~~~~~~~~F~~~-D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 119 (219)
....+..+|..+ |+..+..|..+-+...+..+|..+.+-.+..+--.++...-+..+.+||+..+...
T Consensus 62 s~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l 130 (260)
T KOG3077|consen 62 SEKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTAL 130 (260)
T ss_pred cHHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHHc
Confidence 344566667766 55555688888899999999987666665555556666667889999998866544
No 160
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=68.82 E-value=32 Score=28.40 Aligned_cols=99 Identities=18% Similarity=0.139 Sum_probs=58.5
Q ss_pred CCCCcccHHHHHHHHHhhc----ccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCccccCCCCCCCCCCCCCC
Q 027734 66 DGDGFITKTELVESLRNLR----LMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKGGAGDGEGGGGGGA 141 (219)
Q Consensus 66 ~~~g~is~~el~~~l~~~~----~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (219)
.|+...+..||+.+..-.. -++.-+.+..+-+..|.|.+|.|+.+|=-.++...+.. .
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky------------------~ 101 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKY------------------R 101 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhc------------------c
Confidence 3444455555554432211 23445667788888999999999998877777766555 1
Q ss_pred ChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHH
Q 027734 142 DEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKK 187 (219)
Q Consensus 142 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~ 187 (219)
.....-.+.|.- .|-.||.+++-.++..-..+ +++-+..-.
T Consensus 102 ~~~~kr~~~fH~----dD~~ItVedLWeaW~~Sev~-nWT~e~tvq 142 (575)
T KOG4403|consen 102 DSTRKRSEKFHG----DDKHITVEDLWEAWKESEVH-NWTNERTVQ 142 (575)
T ss_pred cchhhhhhhccC----CccceeHHHHHHHHHhhhhh-cchHHHHHH
Confidence 222222234443 35679999988877664433 355544433
No 161
>PLN02222 phosphoinositide phospholipase C 2
Probab=67.79 E-value=28 Score=30.25 Aligned_cols=64 Identities=19% Similarity=0.323 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhhcc--cCCHHHHHHHHHhhCC-CCCCcccHHHHHHHHHhh
Q 027734 54 AELKRVFATFDKDGDGFITKTELVESLRNLRL--MVTDMEAEEMVAKVDA-NGDGLIEFDEFCMLYEGM 119 (219)
Q Consensus 54 ~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~--~~~~~~~~~~~~~~d~-~~~g~i~~~eF~~~~~~~ 119 (219)
.++..+|..+-. ++.++.++|..+|..... ..+.+.+..++..+.. ...+.++++.|..++...
T Consensus 25 ~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 25 REIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred HHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 478888888843 479999999999987654 3467778888887632 235679999999998764
No 162
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=67.67 E-value=13 Score=22.25 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=32.6
Q ss_pred cccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCC
Q 027734 70 FITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGG 122 (219)
Q Consensus 70 ~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~ 122 (219)
.+++..+..++. ..++...+..+...|+.=..+.|+.+||+..+..+-+.
T Consensus 8 ~~~F~~L~~~l~---~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD 57 (70)
T PF12174_consen 8 WMPFPMLFSALS---KHLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVGD 57 (70)
T ss_pred cccHHHHHHHHH---HHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 345444444443 34566667777777766667889999999888776443
No 163
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=67.64 E-value=12 Score=32.88 Aligned_cols=73 Identities=21% Similarity=0.347 Sum_probs=54.5
Q ss_pred CChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHc---C---CCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHhCCc
Q 027734 141 ADEGDDLKDAFDVFDKDKDGLISVEELGLVLSAL---G---LNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKAGGV 214 (219)
Q Consensus 141 ~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~---~---~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~ 214 (219)
...++.++..|..+|. .+|.++.+++..++... + .....+.+....++...|.+..|.+.++++...+...+.
T Consensus 14 ~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~~~~~ 92 (646)
T KOG0039|consen 14 CSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLLQIPT 92 (646)
T ss_pred CChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHHHhchH
Confidence 4667889999999998 89999999998887543 1 111234556777888888888888888888777765553
No 164
>PLN02228 Phosphoinositide phospholipase C
Probab=67.58 E-value=32 Score=29.80 Aligned_cols=66 Identities=15% Similarity=0.286 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcc--cCCHHHHHHHHHhhCCC----CCCcccHHHHHHHHHhh
Q 027734 52 KKAELKRVFATFDKDGDGFITKTELVESLRNLRL--MVTDMEAEEMVAKVDAN----GDGLIEFDEFCMLYEGM 119 (219)
Q Consensus 52 ~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~--~~~~~~~~~~~~~~d~~----~~g~i~~~eF~~~~~~~ 119 (219)
...++..+|..+-. ++.++.++|..+|..... ..+.+.+..++..+... ..|.++.+.|..++...
T Consensus 22 ~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 22 PPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 44567788888743 368999999999987654 24566788888888543 24679999999998764
No 165
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.98 E-value=3.9 Score=32.77 Aligned_cols=69 Identities=19% Similarity=0.355 Sum_probs=49.3
Q ss_pred ChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHh
Q 027734 142 DEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKA 211 (219)
Q Consensus 142 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 211 (219)
...+.+++.|+.+|..+.|+|+.+-++.++..+.... ...+.+..+=+.+|...-|.|-.++|...+.+
T Consensus 306 ~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~v-se~a~v~l~~~~l~pE~~~iil~~d~lg~~~p 374 (449)
T KOG2871|consen 306 NPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLV-SEPAYVMLMRQPLDPESLGIILLEDFLGEFFP 374 (449)
T ss_pred CCCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccc-cCHHHHHHhcCccChhhcceEEeccccccccC
Confidence 4467899999999999999999999999999887322 23344444444566666666666666554443
No 166
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.52 E-value=5.1 Score=32.15 Aligned_cols=67 Identities=21% Similarity=0.350 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcccCCH-HHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 027734 53 KAELKRVFATFDKDGDGFITKTELVESLRNLRLMVTD-MEAEEMVAKVDANGDGLIEFDEFCMLYEGM 119 (219)
Q Consensus 53 ~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~-~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 119 (219)
-..+++.|..+|+.+.|+|+.+-+..++..++...++ ..+...-...|+..-|.|-..+|...+...
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~~p~ 375 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEFFPT 375 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccccccCc
Confidence 4578999999999999999999999999988744443 444444456678777888777776655433
No 167
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=66.39 E-value=29 Score=21.62 Aligned_cols=52 Identities=15% Similarity=0.236 Sum_probs=40.6
Q ss_pred CCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 027734 68 DGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGM 119 (219)
Q Consensus 68 ~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 119 (219)
.-.+...+|+..|..........+...+-..+|.-.++.||.=||--+.+-.
T Consensus 20 r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlF 71 (85)
T PF02761_consen 20 RTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRLF 71 (85)
T ss_dssp -SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT
T ss_pred CeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHHH
Confidence 3569999999999998776666777888889999999999999987666544
No 168
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.38 E-value=36 Score=27.86 Aligned_cols=60 Identities=15% Similarity=0.292 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 027734 53 KAELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCML 115 (219)
Q Consensus 53 ~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 115 (219)
+....++|..+.+ -+|+||-..-+..+-. ..+....+..+|+..|.+.||.++-+||.-.
T Consensus 443 k~~yde~fy~l~p-~~gk~sg~~ak~~mv~--sklpnsvlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 443 KPTYDEIFYTLSP-VNGKLSGRNAKKEMVK--SKLPNSVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred CcchHhhhhcccc-cCceeccchhHHHHHh--ccCchhHHHhhhhhhcCCcccCcCHHHHHHH
Confidence 3456778888844 5799998888887754 4567888999999999999999999999744
No 169
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=64.64 E-value=26 Score=20.50 Aligned_cols=31 Identities=6% Similarity=0.105 Sum_probs=25.2
Q ss_pred CcccHHHHHHHHHhhcccCCHHHHHHHHHhh
Q 027734 69 GFITKTELVESLRNLRLMVTDMEAEEMVAKV 99 (219)
Q Consensus 69 g~is~~el~~~l~~~~~~~~~~~~~~~~~~~ 99 (219)
-.|+.+.++..+.+.|..+++..+..+++..
T Consensus 30 Ppine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 30 PPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 3577888888888899999998888887764
No 170
>PLN02230 phosphoinositide phospholipase C 4
Probab=64.08 E-value=42 Score=29.29 Aligned_cols=67 Identities=18% Similarity=0.242 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcc---cCCHHHHHHHHHhhC-------CCCCCcccHHHHHHHHHhh
Q 027734 52 KKAELKRVFATFDKDGDGFITKTELVESLRNLRL---MVTDMEAEEMVAKVD-------ANGDGLIEFDEFCMLYEGM 119 (219)
Q Consensus 52 ~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~---~~~~~~~~~~~~~~d-------~~~~g~i~~~eF~~~~~~~ 119 (219)
...++..+|..+-. +.+.+|.++|..+|..... ..+...+..++..+- .-+.+.++.+.|..++...
T Consensus 27 p~~ei~~lf~~~s~-~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s~ 103 (598)
T PLN02230 27 PVADVRDLFEKYAD-GDAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFST 103 (598)
T ss_pred CcHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcCc
Confidence 45678889999943 3489999999999988763 235566666665441 1124569999999988763
No 171
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=63.26 E-value=24 Score=21.05 Aligned_cols=30 Identities=20% Similarity=0.142 Sum_probs=21.1
Q ss_pred hhHHHHHhhhcCCCCCcccHHHHHHHHHHc
Q 027734 145 DDLKDAFDVFDKDKDGLISVEELGLVLSAL 174 (219)
Q Consensus 145 ~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~ 174 (219)
.....+...|+.-+.+.|+++||.+.++..
T Consensus 25 ~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 25 SKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 344555555555567889999998888765
No 172
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=63.21 E-value=1.3e+02 Score=27.85 Aligned_cols=89 Identities=13% Similarity=0.225 Sum_probs=60.3
Q ss_pred hhCCCCCCcccHHHHHHHHHhhcCCCccccCCCCCCCCCCCCCCChHhhHHHHHhhhc--CCCCCccc-----HHHHHHH
Q 027734 98 KVDANGDGLIEFDEFCMLYEGMMGGDRQEKGGAGDGEGGGGGGADEGDDLKDAFDVFD--KDKDGLIS-----VEELGLV 170 (219)
Q Consensus 98 ~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D--~~~~G~I~-----~~e~~~~ 170 (219)
....|..|+|.-..+...+..-. ....+..+...+- .++...|. .+.|..+
T Consensus 156 kmqvn~~grip~knI~k~F~~~k----------------------~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~ 213 (1189)
T KOG1265|consen 156 KMQVNFEGRIPVKNIIKTFSADK----------------------KEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRL 213 (1189)
T ss_pred hhcccccccccHHHHHHHhhcCC----------------------chhHHHHHHHhcCCCCCCcCccChhhccHHHHHHH
Confidence 34567788888888887776331 1133444444332 22333444 4556777
Q ss_pred HHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHhCC
Q 027734 171 LSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKAGG 213 (219)
Q Consensus 171 l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~ 213 (219)
+..+... .+++.+|..+..+....++.++++.|+...+
T Consensus 214 l~klcpR-----~eie~iF~ki~~~~kpylT~~ql~dfln~~Q 251 (1189)
T KOG1265|consen 214 LNKLCPR-----PEIEEIFRKISGKKKPYLTKEQLVDFLNKKQ 251 (1189)
T ss_pred HHhcCCc-----hhHHHHHHHhccCCCccccHHHHHHHHhhhc
Confidence 7777643 3899999999988888999999999998765
No 173
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.48 E-value=35 Score=20.29 Aligned_cols=31 Identities=3% Similarity=0.079 Sum_probs=26.5
Q ss_pred CcccHHHHHHHHHhhcccCCHHHHHHHHHhh
Q 027734 69 GFITKTELVESLRNLRLMVTDMEAEEMVAKV 99 (219)
Q Consensus 69 g~is~~el~~~l~~~~~~~~~~~~~~~~~~~ 99 (219)
=.|+.+-++..+.+.|.++++..++.+++..
T Consensus 37 Ppine~~iR~M~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 37 PPINEEMIRMMMAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred CCCCHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 3688888999999999999999999888765
No 174
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=58.98 E-value=46 Score=21.42 Aligned_cols=62 Identities=19% Similarity=0.318 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCC---CCCCcccHHHHHHHHHhhc
Q 027734 54 AELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDA---NGDGLIEFDEFCMLYEGMM 120 (219)
Q Consensus 54 ~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~---~~~g~i~~~eF~~~~~~~~ 120 (219)
..+.+-|..+-. +|+|+.+.|-..+ |-.-+++-..++|..+-. -..+.|+.+|...+|..+.
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qis 94 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQIS 94 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhh
Confidence 355666777755 8999999998865 333466666777765522 1246899999999887664
No 175
>PRK00523 hypothetical protein; Provisional
Probab=58.12 E-value=39 Score=20.29 Aligned_cols=30 Identities=10% Similarity=0.112 Sum_probs=25.0
Q ss_pred cccHHHHHHHHHhhcccCCHHHHHHHHHhh
Q 027734 70 FITKTELVESLRNLRLMVTDMEAEEMVAKV 99 (219)
Q Consensus 70 ~is~~el~~~l~~~~~~~~~~~~~~~~~~~ 99 (219)
.|+.+.++..+.+.|.++++..++.+++..
T Consensus 39 pine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 39 PITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred CCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 577778888888889999999988888765
No 176
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=57.39 E-value=28 Score=20.08 Aligned_cols=31 Identities=19% Similarity=0.158 Sum_probs=26.3
Q ss_pred CcccHHHHHHHHHhhcccCCHHHHHHHHHhh
Q 027734 69 GFITKTELVESLRNLRLMVTDMEAEEMVAKV 99 (219)
Q Consensus 69 g~is~~el~~~l~~~~~~~~~~~~~~~~~~~ 99 (219)
-.+|.+|+...+..++..++..++-.+|...
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 4588899999999998888888888888766
No 177
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=56.44 E-value=30 Score=18.46 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhc-CC-CCCcccHHHHHHHHHh
Q 027734 52 KKAELKRVFATFD-KD-GDGFITKTELVESLRN 82 (219)
Q Consensus 52 ~~~~~~~~F~~~D-~~-~~g~is~~el~~~l~~ 82 (219)
.+..+-.+|..+- .+ ....++..||+.++..
T Consensus 4 ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 4 AIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 3455667777774 22 3467888888888764
No 178
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=56.32 E-value=19 Score=22.98 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=20.2
Q ss_pred ChHHHHHHHHHHHHHHHHHhhccchHHH
Q 027734 1 MVVSILLLAVLFIAGFINIFVYFPTKKF 28 (219)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (219)
|+...|+++..+++.++..++....++.
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 6777777777777777777777766655
No 179
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=56.10 E-value=12 Score=24.29 Aligned_cols=54 Identities=15% Similarity=0.119 Sum_probs=35.2
Q ss_pred CCcccHHHHHHHHHHcCCCCCCcHHHH---HHHHHHHcCCCCCceeHHHHHHHHHhCCcccc
Q 027734 159 DGLISVEELGLVLSALGLNEGNKIENC---KKMIRKVDVDGDGMVNFDEFRRMMKAGGVLLT 217 (219)
Q Consensus 159 ~G~I~~~e~~~~l~~~~~~~~~~~~~~---~~~~~~~d~~~dg~i~~~eF~~~l~~~~~~~~ 217 (219)
..-+|.+|++.++...|.. +-+ ...++.++.+....++-++.+..|..+|.+++
T Consensus 33 ~~p~s~~eL~~~l~~~g~~-----~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~~p~Lik 89 (105)
T cd03035 33 KDGLDAATLERWLAKVGWE-----TLLNKRGTTWRKLDDAQKAALDAAKAIALMLEHPSLIK 89 (105)
T ss_pred cCCCCHHHHHHHHHHhChH-----HHHccCchHHHhCChhhhccCCHHHHHHHHHhCcCeee
Confidence 3468888999888877621 111 12344443332245788999999999998864
No 180
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=55.78 E-value=28 Score=24.23 Aligned_cols=65 Identities=22% Similarity=0.365 Sum_probs=44.7
Q ss_pred HHHHHHHh----cCCCCC-cccHHHHHHHHHhhcc----cCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhc
Q 027734 56 LKRVFATF----DKDGDG-FITKTELVESLRNLRL----MVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMM 120 (219)
Q Consensus 56 ~~~~F~~~----D~~~~g-~is~~el~~~l~~~~~----~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~ 120 (219)
+.+.|+.+ |+..+| .++-..+..|++..+. ..+..+....|+.+....-+.++|++|...+..+-
T Consensus 14 ~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela 87 (180)
T KOG4070|consen 14 LEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEELA 87 (180)
T ss_pred HHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHHH
Confidence 44444444 444455 4677778888887543 45667777888888777778999999977776553
No 181
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=55.32 E-value=40 Score=21.96 Aligned_cols=62 Identities=10% Similarity=0.236 Sum_probs=35.8
Q ss_pred hhhcCCCCCcccHHHHHHHHHHcC--------CCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHhCC
Q 027734 152 DVFDKDKDGLISVEELGLVLSALG--------LNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKAGG 213 (219)
Q Consensus 152 ~~~D~~~~G~I~~~e~~~~l~~~~--------~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~ 213 (219)
+.||+..+-+||.++++++...-. -..+++...+-.++-.....+...++..=..+.++-.+
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr~yg 79 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFLTQIIRFYG 79 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhC
Confidence 357888888899999888875420 01234555555555555444555555544444444333
No 182
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=54.96 E-value=15 Score=23.63 Aligned_cols=81 Identities=19% Similarity=0.072 Sum_probs=40.9
Q ss_pred CCCcccHHHHHHHHHhhcc-----cCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCccccCCCCCCCCCCCCCC
Q 027734 67 GDGFITKTELVESLRNLRL-----MVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKGGAGDGEGGGGGGA 141 (219)
Q Consensus 67 ~~g~is~~el~~~l~~~~~-----~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (219)
.||.++.+|...+...+.. ......+..++...-.+- -..+..++...+...... .
T Consensus 15 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------------------~ 75 (111)
T cd07176 15 ADGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALL-RPEGLAALLKAAAKLLPP------------------E 75 (111)
T ss_pred hccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHhCCH------------------H
Confidence 3677777777766655431 123344444444432220 023446666666554322 2
Q ss_pred ChHhhHHHHHhhhcCCCCCcccHHHHH
Q 027734 142 DEGDDLKDAFDVFDKDKDGLISVEELG 168 (219)
Q Consensus 142 ~~~~~~~~~F~~~D~~~~G~I~~~e~~ 168 (219)
....-+..++..... ||.++..|-.
T Consensus 76 ~r~~~~~~~~~ia~a--DG~~~~~E~~ 100 (111)
T cd07176 76 LRETAFAVAVDIAAA--DGEVDPEERA 100 (111)
T ss_pred HHHHHHHHHHHHHHc--cCCCCHHHHH
Confidence 333445555555553 5677777643
No 183
>PRK01844 hypothetical protein; Provisional
Probab=54.86 E-value=45 Score=20.03 Aligned_cols=30 Identities=10% Similarity=0.111 Sum_probs=25.1
Q ss_pred cccHHHHHHHHHhhcccCCHHHHHHHHHhh
Q 027734 70 FITKTELVESLRNLRLMVTDMEAEEMVAKV 99 (219)
Q Consensus 70 ~is~~el~~~l~~~~~~~~~~~~~~~~~~~ 99 (219)
.|+.+-++.-+.+.|.++++..++.+++..
T Consensus 38 pine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 38 PINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred CCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 577788888888899999999988888766
No 184
>PRK10026 arsenate reductase; Provisional
Probab=53.14 E-value=17 Score=25.12 Aligned_cols=55 Identities=11% Similarity=0.169 Sum_probs=37.6
Q ss_pred CCcccHHHHHHHHHHcCCCCCCcHHHHH---HHHHHHcCCCCCceeHHHHHHHHHhCCcccc
Q 027734 159 DGLISVEELGLVLSALGLNEGNKIENCK---KMIRKVDVDGDGMVNFDEFRRMMKAGGVLLT 217 (219)
Q Consensus 159 ~G~I~~~e~~~~l~~~~~~~~~~~~~~~---~~~~~~d~~~dg~i~~~eF~~~l~~~~~~~~ 217 (219)
...+|.+|++.++...|.. ..+-++ ..++.++.+. ..++.++.+..|..+|.+++
T Consensus 36 ~~ppt~~eL~~~l~~~g~~---~~~lint~~~~yr~L~~~~-~~ls~~e~l~ll~~~P~LIK 93 (141)
T PRK10026 36 ETPPTRDELVKLIADMGIS---VRALLRKNVEPYEELGLAE-DKFTDDQLIDFMLQHPILIN 93 (141)
T ss_pred CCCcCHHHHHHHHHhCCCC---HHHHHHcCCchHHHcCCCc-cCCCHHHHHHHHHhCcccee
Confidence 3568999999999988742 122222 2344554333 35789999999999998874
No 185
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=51.92 E-value=19 Score=24.33 Aligned_cols=104 Identities=24% Similarity=0.300 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhh--cccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCccccCCC
Q 027734 53 KAELKRVFATFDKDGDGFITKTELVESLRNL--RLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKGGA 130 (219)
Q Consensus 53 ~~~~~~~F~~~D~~~~g~is~~el~~~l~~~--~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~ 130 (219)
...+-.+...+ .-.||.++.+|...+...+ ....+......+...++.-.....++.+++..+......
T Consensus 23 ~~a~~~ll~~~-a~aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~-------- 93 (140)
T PF05099_consen 23 REALLALLAAV-AKADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSP-------- 93 (140)
T ss_dssp HHHHHHHHHHH-HHTTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--H--------
T ss_pred HHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhch--------
Confidence 33333444444 2358999999988876655 234456667777776665555578888888776543222
Q ss_pred CCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHH---HHHHHHcCCC
Q 027734 131 GDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEEL---GLVLSALGLN 177 (219)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~---~~~l~~~~~~ 177 (219)
.....-++.++..... ||.++..|- +++...+|++
T Consensus 94 ----------~~r~~ll~~l~~ia~A--DG~~~~~E~~~l~~ia~~L~i~ 131 (140)
T PF05099_consen 94 ----------EEREDLLRMLIAIAYA--DGEISPEEQEFLRRIAEALGIS 131 (140)
T ss_dssp ----------HHHHHHHHHHHHHCTC--TTC-SCCHHHHHHHHHHHCTS-
T ss_pred ----------HHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCCC
Confidence 2334455556666665 466666553 3333445543
No 186
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=51.17 E-value=9.3 Score=24.91 Aligned_cols=58 Identities=19% Similarity=0.140 Sum_probs=34.3
Q ss_pred CCcccHHHHHHHHHHcCCCCC-CcHHHHHHHHHHHcCCCCCceeHHHHHHHHHhCCcccc
Q 027734 159 DGLISVEELGLVLSALGLNEG-NKIENCKKMIRKVDVDGDGMVNFDEFRRMMKAGGVLLT 217 (219)
Q Consensus 159 ~G~I~~~e~~~~l~~~~~~~~-~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~~~~ 217 (219)
.-.+|.+|+..++..+|.... +-. --...++..+......++-++.++.+..+|.+++
T Consensus 30 k~p~s~~el~~~l~~~~~~~~~lin-~~~~~~k~l~~~~~~~~s~~e~i~~l~~~p~Lik 88 (110)
T PF03960_consen 30 KEPLSREELRELLSKLGNGPDDLIN-TRSKTYKELGKLKKDDLSDEELIELLLENPKLIK 88 (110)
T ss_dssp TS---HHHHHHHHHHHTSSGGGGB--TTSHHHHHTTHHHCTTSBHHHHHHHHHHSGGGB-
T ss_pred hCCCCHHHHHHHHHHhcccHHHHhc-CccchHhhhhhhhhhhhhhHHHHHHHHhChhhee
Confidence 345999999999999884210 000 0012334443122457899999999999999875
No 187
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=50.48 E-value=44 Score=26.89 Aligned_cols=44 Identities=16% Similarity=0.217 Sum_probs=31.7
Q ss_pred CCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHH
Q 027734 158 KDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 209 (219)
Q Consensus 158 ~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l 209 (219)
..|.||++|-...++.... ..+++.++.+++.++ |+.+||.+.+
T Consensus 299 R~G~itReeal~~v~~~d~--~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 299 RSGRITREEAIELVKEYDG--EFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred HcCCCCHHHHHHHHHHhcc--cccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 4788888888888877542 235677888888886 6677887654
No 188
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=50.33 E-value=77 Score=21.42 Aligned_cols=67 Identities=15% Similarity=0.172 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHhcCCC--CCcccHHHHHHHHHhhc------ccC-C-----------HHHHHHHHHhhCCCCCCcccHH
Q 027734 51 YKKAELKRVFATFDKDG--DGFITKTELVESLRNLR------LMV-T-----------DMEAEEMVAKVDANGDGLIEFD 110 (219)
Q Consensus 51 ~~~~~~~~~F~~~D~~~--~g~is~~el~~~l~~~~------~~~-~-----------~~~~~~~~~~~d~~~~g~i~~~ 110 (219)
-....+.++|+...-+. |..++..|+..++..+- .+. . +--+..++..||.+++|.|+--
T Consensus 38 v~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vl 117 (127)
T PF09068_consen 38 VDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVL 117 (127)
T ss_dssp --HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHH
T ss_pred eeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehh
Confidence 34556777888776543 56799999888887653 111 1 1125678899999999999999
Q ss_pred HHHHHHH
Q 027734 111 EFCMLYE 117 (219)
Q Consensus 111 eF~~~~~ 117 (219)
.|...+.
T Consensus 118 s~KvaL~ 124 (127)
T PF09068_consen 118 SFKVALI 124 (127)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876654
No 189
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=50.23 E-value=1.2e+02 Score=24.96 Aligned_cols=84 Identities=13% Similarity=0.201 Sum_probs=49.3
Q ss_pred CcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCccccCCCCCCCCCCCCCCChHhhHH
Q 027734 69 GFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKGGAGDGEGGGGGGADEGDDLK 148 (219)
Q Consensus 69 g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (219)
-.+.+..|+.+|.......+.-+...+-..+|...++.||--||--+.+....+ ..+.
T Consensus 189 ~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLFqPw----------------------~tll 246 (563)
T KOG1785|consen 189 TIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLFQPW----------------------KTLL 246 (563)
T ss_pred ccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHHHhhccH----------------------HHHH
Confidence 345666666666665544444555555666677777777665554444333222 3445
Q ss_pred HHHhhhcCCCCCc---ccHHHHHHHHHHc
Q 027734 149 DAFDVFDKDKDGL---ISVEELGLVLSAL 174 (219)
Q Consensus 149 ~~F~~~D~~~~G~---I~~~e~~~~l~~~ 174 (219)
+-|+.+...+.|+ ++.+|++.-|..+
T Consensus 247 kNWq~LavtHPGYmAFLTYDEVk~RLqk~ 275 (563)
T KOG1785|consen 247 KNWQTLAVTHPGYMAFLTYDEVKARLQKY 275 (563)
T ss_pred HhhhhhhccCCceeEEeeHHHHHHHHHHH
Confidence 5566666666665 6777777766554
No 190
>COG3462 Predicted membrane protein [Function unknown]
Probab=50.07 E-value=71 Score=20.91 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=13.5
Q ss_pred CCCcccHHHHHHHHHhh
Q 027734 67 GDGFITKTELVESLRNL 83 (219)
Q Consensus 67 ~~g~is~~el~~~l~~~ 83 (219)
..|.||.+|+.+.+..+
T Consensus 99 AkGEItEEEY~r~~~~i 115 (117)
T COG3462 99 AKGEITEEEYRRIIRTI 115 (117)
T ss_pred hcCCCCHHHHHHHHHHh
Confidence 36889999999887654
No 191
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=49.35 E-value=87 Score=21.74 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=20.8
Q ss_pred HHHHHHhhcccCCHHHHHHHHH----------hhCCCCCCcccHHHHHH
Q 027734 76 LVESLRNLRLMVTDMEAEEMVA----------KVDANGDGLIEFDEFCM 114 (219)
Q Consensus 76 l~~~l~~~~~~~~~~~~~~~~~----------~~d~~~~g~i~~~eF~~ 114 (219)
+..-+.++|...+++++..++. .+-.+..|..+...+..
T Consensus 95 l~~e~eklGi~Vs~~El~d~l~~g~~p~~~~~~~f~~~tG~Fd~~~l~~ 143 (145)
T PF13623_consen 95 LEQEFEKLGITVSDDELQDMLNQGTNPMLQQNPFFNPQTGQFDRAKLKQ 143 (145)
T ss_pred HHHHHHHhCCccCHHHHHHHHhcCCCchhhhccccCcccCCcCHHHHHh
Confidence 3344455666666666666551 11233566666665544
No 192
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=48.83 E-value=56 Score=19.38 Aligned_cols=28 Identities=14% Similarity=0.224 Sum_probs=14.8
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHc
Q 027734 164 VEELGLVLSALGLNEGNKIENCKKMIRKVD 193 (219)
Q Consensus 164 ~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d 193 (219)
.+++..++...|.. +++.++..+++.-+
T Consensus 16 d~~m~~if~l~~~~--vs~~el~a~lrke~ 43 (68)
T PF07308_consen 16 DDDMIEIFALAGFE--VSKAELSAWLRKED 43 (68)
T ss_pred hHHHHHHHHHcCCc--cCHHHHHHHHCCCC
Confidence 34555555555543 35556666655533
No 193
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=48.73 E-value=1.2e+02 Score=25.66 Aligned_cols=67 Identities=10% Similarity=-0.021 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 027734 52 KKAELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGM 119 (219)
Q Consensus 52 ~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 119 (219)
..+....+|...-+.+.-.+|..|+..|+.+++......+--..|...+.+.. -+.|..++..+..-
T Consensus 483 ~l~~~t~~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~egi~~F~~~a~s~~-gv~yl~v~~~i~se 549 (612)
T COG5069 483 VLRSNTALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSFGDPAGSVS-GVFYLDVLKGIHSE 549 (612)
T ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhccccCCccceeeccCCccccc-cchHHHHHHHHhhh
Confidence 33444556666655555579999999999998876554443334432222111 34555555554433
No 194
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=48.69 E-value=4.7 Score=27.44 Aligned_cols=54 Identities=20% Similarity=0.287 Sum_probs=31.9
Q ss_pred CCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHh
Q 027734 158 KDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKA 211 (219)
Q Consensus 158 ~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 211 (219)
-||.++.+|...+...+.....++..+...+...++.-.....++.+|...+..
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 89 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRD 89 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCT
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 378899998887766652222334556666666665444446677777766654
No 195
>PF15102 TMEM154: TMEM154 protein family
Probab=48.20 E-value=7.8 Score=26.77 Aligned_cols=22 Identities=18% Similarity=0.064 Sum_probs=13.8
Q ss_pred cCCCCCcccHHHHHHHHHhhcc
Q 027734 64 DKDGDGFITKTELVESLRNLRL 85 (219)
Q Consensus 64 D~~~~g~is~~el~~~l~~~~~ 85 (219)
|.-.-=.|..+||..|+.+.+.
T Consensus 118 dtpsvmeiEmeeldkwm~s~n~ 139 (146)
T PF15102_consen 118 DTPSVMEIEMEELDKWMNSMNR 139 (146)
T ss_pred CCcchhhhhHHHHHhHHHhhcc
Confidence 3334445777778777777654
No 196
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=47.87 E-value=77 Score=20.70 Aligned_cols=55 Identities=18% Similarity=0.245 Sum_probs=36.7
Q ss_pred CCcccHHHHHHHHHHcCCCCCCcHHHHHH---HHHHHcCCCCCceeHHHHHHHHHhCCcccc
Q 027734 159 DGLISVEELGLVLSALGLNEGNKIENCKK---MIRKVDVDGDGMVNFDEFRRMMKAGGVLLT 217 (219)
Q Consensus 159 ~G~I~~~e~~~~l~~~~~~~~~~~~~~~~---~~~~~d~~~dg~i~~~eF~~~l~~~~~~~~ 217 (219)
...+|.+|+..++...|.. .++-+.. .++..+.+ ...++-++.++.+..+|.+++
T Consensus 33 ~~~~t~~el~~~l~~~~~~---~~~lin~~~~~y~~l~~~-~~~ls~~e~i~ll~~~P~Lik 90 (112)
T cd03034 33 KTPPTAAELRELLAKLGIS---PRDLLRTKEAPYKELGLA-DPELSDEELIDAMAAHPILIE 90 (112)
T ss_pred cCCcCHHHHHHHHHHcCCC---HHHHHhcCCchHHHcCCC-ccCCCHHHHHHHHHhCcCccc
Confidence 4568999999999988743 1111211 23333322 346889999999999998875
No 197
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=46.74 E-value=33 Score=33.63 Aligned_cols=74 Identities=11% Similarity=0.085 Sum_probs=53.2
Q ss_pred cccHhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcccCC----HHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcC
Q 027734 47 RTSAYKKAELKRVFATFDKDGDGFITKTELVESLRNLRLMVT----DMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMG 121 (219)
Q Consensus 47 ~~~~~~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~ 121 (219)
.+++.+.++..++++.+|++..|.|...++...++.+..++. ... +.+--..-...++.|++.+-+..+.....
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~r~l 1487 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTKRVL 1487 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHHHhh
Confidence 577788999999999999999999999999999988754321 111 22222233456788888887776665433
No 198
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=46.34 E-value=38 Score=16.79 Aligned_cols=29 Identities=21% Similarity=0.186 Sum_probs=20.4
Q ss_pred cccHHHHHHHHHHcCCCCCCcHHHHHHHH
Q 027734 161 LISVEELGLVLSALGLNEGNKIENCKKMI 189 (219)
Q Consensus 161 ~I~~~e~~~~l~~~~~~~~~~~~~~~~~~ 189 (219)
.++..+++..++..|.+..-...++..-+
T Consensus 3 ~l~~~~Lk~~l~~~gl~~~G~K~~Lv~Rl 31 (35)
T smart00513 3 KLKVSELKDELKKRGLSTSGTKAELVDRL 31 (35)
T ss_pred cCcHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 56788889999988887655555554433
No 199
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=46.25 E-value=39 Score=16.86 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=20.6
Q ss_pred cccHHHHHHHHHHcCCCCCCcHHHHHHHHH
Q 027734 161 LISVEELGLVLSALGLNEGNKIENCKKMIR 190 (219)
Q Consensus 161 ~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 190 (219)
.++..|++..++..|.+..-+..++.+-+.
T Consensus 3 ~l~v~eLk~~l~~~gL~~~G~K~~Li~Rl~ 32 (35)
T PF02037_consen 3 KLTVAELKEELKERGLSTSGKKAELIERLK 32 (35)
T ss_dssp TSHHHHHHHHHHHTTS-STSSHHHHHHHHH
T ss_pred cCcHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 467788899998888877666666554443
No 200
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=45.71 E-value=33 Score=22.53 Aligned_cols=55 Identities=20% Similarity=0.247 Sum_probs=36.3
Q ss_pred CCcccHHHHHHHHHHcCCCCCCcHHHH---HHHHHHHcCCCCCceeHHHHHHHHHhCCcccc
Q 027734 159 DGLISVEELGLVLSALGLNEGNKIENC---KKMIRKVDVDGDGMVNFDEFRRMMKAGGVLLT 217 (219)
Q Consensus 159 ~G~I~~~e~~~~l~~~~~~~~~~~~~~---~~~~~~~d~~~dg~i~~~eF~~~l~~~~~~~~ 217 (219)
...++.+|+..++...+.. .+.-+ ...++..+.+ +..++-+|.++.+..+|.+++
T Consensus 34 ~~~~~~~el~~~~~~~~~~---~~~l~n~~~~~~k~l~~~-~~~ls~~e~i~~l~~~p~Lik 91 (115)
T cd03032 34 KQPLTKEELKEILSLTENG---VEDIISTRSKAFKNLNID-IDELSLSELIRLISEHPSLLR 91 (115)
T ss_pred CCcchHHHHHHHHHHhcCC---HHHHHhcCcHHHHHcCCC-cccCCHHHHHHHHHhChhhee
Confidence 4568899999999888632 11111 1233444333 246888999999999998875
No 201
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=43.63 E-value=84 Score=19.91 Aligned_cols=84 Identities=15% Similarity=0.193 Sum_probs=40.2
Q ss_pred CCCcccHHHHHHHHHhhc-ccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCccccCCCCCCCCCCCCCCChHh
Q 027734 67 GDGFITKTELVESLRNLR-LMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKGGAGDGEGGGGGGADEGD 145 (219)
Q Consensus 67 ~~g~is~~el~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (219)
.||.++..|...+-..+. ..........+...+..-.+...++.+|...+....... ......
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~r~~ 75 (106)
T cd07316 12 ADGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFRRACGGR----------------PELLLQ 75 (106)
T ss_pred ccCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHCCC----------------HHHHHH
Confidence 367777776544333221 122233333333333222222267788877776543110 013334
Q ss_pred hHHHHHhhhcCCCCCcccHHHHH
Q 027734 146 DLKDAFDVFDKDKDGLISVEELG 168 (219)
Q Consensus 146 ~~~~~F~~~D~~~~G~I~~~e~~ 168 (219)
-+..+|...-. ||.++..|-.
T Consensus 76 ~l~~l~~vA~A--DG~~~~~E~~ 96 (106)
T cd07316 76 LLEFLFQIAYA--DGELSEAERE 96 (106)
T ss_pred HHHHHHHHHHH--cCCCCHHHHH
Confidence 45555655553 5778887754
No 202
>PLN02223 phosphoinositide phospholipase C
Probab=43.37 E-value=1.3e+02 Score=26.00 Aligned_cols=67 Identities=12% Similarity=-0.022 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHH---Hhhc--ccCCHHHHHHHHHhhCCC--------CCCcccHHHHHHHHHhh
Q 027734 53 KAELKRVFATFDKDGDGFITKTELVESL---RNLR--LMVTDMEAEEMVAKVDAN--------GDGLIEFDEFCMLYEGM 119 (219)
Q Consensus 53 ~~~~~~~F~~~D~~~~g~is~~el~~~l---~~~~--~~~~~~~~~~~~~~~d~~--------~~g~i~~~eF~~~~~~~ 119 (219)
-..++.+|..+ ..+.|.++.+.+.+++ .... ...+.++++.++..+-.. +.+.++.+.|..++...
T Consensus 15 p~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s~ 93 (537)
T PLN02223 15 PDLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFST 93 (537)
T ss_pred cHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcCc
Confidence 35677888888 4677899999999988 4332 245666666666654221 23669999999998764
Q ss_pred c
Q 027734 120 M 120 (219)
Q Consensus 120 ~ 120 (219)
.
T Consensus 94 ~ 94 (537)
T PLN02223 94 E 94 (537)
T ss_pred c
Confidence 3
No 203
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=42.49 E-value=70 Score=27.02 Aligned_cols=100 Identities=14% Similarity=0.112 Sum_probs=59.2
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHh---hCC-----CCCCcccHHHHHHHHHhhcCCCccccCC
Q 027734 58 RVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAK---VDA-----NGDGLIEFDEFCMLYEGMMGGDRQEKGG 129 (219)
Q Consensus 58 ~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~---~d~-----~~~g~i~~~eF~~~~~~~~~~~~~~~~~ 129 (219)
-+|..+....++.++..-|..+|++.|+..++..+..++.. +|. ..-+.++.+.|...+...........+.
T Consensus 90 LLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~sSI~lvSqALrk 169 (622)
T KOG0506|consen 90 LLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFSSIVLVSQALRK 169 (622)
T ss_pred hhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhccchhHHHHHHhc
Confidence 35777755557999999999999999998777666655543 342 2235789999987766544332222222
Q ss_pred CCCCCCCCCCCCChHhhHHHHHhhhcCCCCCc
Q 027734 130 AGDGEGGGGGGADEGDDLKDAFDVFDKDKDGL 161 (219)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~ 161 (219)
....+.- ......+..+|+..-.-+.|.
T Consensus 170 qmVIPdw----~~Fts~I~tIFEscke~seG~ 197 (622)
T KOG0506|consen 170 QMVIPDW----EEFTSHIDTIFESCKESSEGK 197 (622)
T ss_pred CccCCcH----HHHHHHHHHHHHHHHhcCCcc
Confidence 2111111 122345666666665544444
No 204
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=41.44 E-value=62 Score=17.82 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=23.9
Q ss_pred CCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCC
Q 027734 158 KDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVD 195 (219)
Q Consensus 158 ~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~ 195 (219)
..|.|+..+++..+ | .+-..+..+++.+|..
T Consensus 7 ~~~~itv~~~rd~l---g----~sRK~ai~lLE~lD~~ 37 (50)
T PF09107_consen 7 KNGEITVAEFRDLL---G----LSRKYAIPLLEYLDRE 37 (50)
T ss_dssp TTSSBEHHHHHHHH---T----S-HHHHHHHHHHHHHT
T ss_pred cCCcCcHHHHHHHH---C----ccHHHHHHHHHHHhcc
Confidence 37899999999987 2 4666788888888865
No 205
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=40.40 E-value=64 Score=28.58 Aligned_cols=89 Identities=20% Similarity=0.251 Sum_probs=59.0
Q ss_pred CCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCccccCCCCCCCCCCCCCCChHhhH
Q 027734 68 DGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKGGAGDGEGGGGGGADEGDDL 147 (219)
Q Consensus 68 ~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (219)
+| ++.+|+. ......+..++.++..+|. .+|.++-+++............... ......+..
T Consensus 2 ~~-~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~ 63 (646)
T KOG0039|consen 2 EG-ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSL-----------IKKQTEEYA 63 (646)
T ss_pred CC-cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhh-----------hhhhhhHHH
Confidence 45 7777777 2223456677778888877 7888888888877766554422110 012334455
Q ss_pred HHHHhhhcCCCCCcccHHHHHHHHHHc
Q 027734 148 KDAFDVFDKDKDGLISVEELGLVLSAL 174 (219)
Q Consensus 148 ~~~F~~~D~~~~G~I~~~e~~~~l~~~ 174 (219)
..+++..|.++.|++..+++..++...
T Consensus 64 ~~~~~~~~~~~~~y~~~~~~~~ll~~~ 90 (646)
T KOG0039|consen 64 ALIMEELDPDHKGYITNEDLEILLLQI 90 (646)
T ss_pred HHhhhhccccccceeeecchhHHHHhc
Confidence 667888899999999999888877543
No 206
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=40.05 E-value=93 Score=19.43 Aligned_cols=35 Identities=9% Similarity=0.055 Sum_probs=27.5
Q ss_pred CcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCC
Q 027734 160 GLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDG 196 (219)
Q Consensus 160 G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~ 196 (219)
..||..|+..+.+..+.+. +.++++.++..+-.++
T Consensus 13 n~iT~~eLlkyskqy~i~i--t~~QA~~I~~~lr~k~ 47 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISI--TKKQAEQIANILRGKN 47 (85)
T ss_pred hcCCHHHHHHHHHHhCCCC--CHHHHHHHHHHHhcCC
Confidence 4688999999999999765 8888888888775443
No 207
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=39.81 E-value=33 Score=23.31 Aligned_cols=55 Identities=13% Similarity=0.162 Sum_probs=36.4
Q ss_pred CCcccHHHHHHHHHHcCCCCCCcHHHH---HHHHHHHcCCCCCceeHHHHHHHHHhCCcccc
Q 027734 159 DGLISVEELGLVLSALGLNEGNKIENC---KKMIRKVDVDGDGMVNFDEFRRMMKAGGVLLT 217 (219)
Q Consensus 159 ~G~I~~~e~~~~l~~~~~~~~~~~~~~---~~~~~~~d~~~dg~i~~~eF~~~l~~~~~~~~ 217 (219)
...++.+|+..++...|.. .+.-+ ...++..+.+ ...++-++.+..+..+|.+++
T Consensus 34 ~~~~s~~eL~~~l~~~~~~---~~~lin~~~~~~k~L~~~-~~~ls~~e~i~ll~~~P~Lik 91 (132)
T PRK13344 34 KEPLTKEEILAILTKTENG---IESIVSSKNRYAKALDCD-IEELSVNEVIDLIQENPRILK 91 (132)
T ss_pred CCCCCHHHHHHHHHHhCCC---HHHhhccCcHHHHhCCcc-hhcCCHHHHHHHHHhCcccee
Confidence 4568999999999988742 11111 1233444422 246888999999999998874
No 208
>PRK12559 transcriptional regulator Spx; Provisional
Probab=39.55 E-value=41 Score=22.82 Aligned_cols=55 Identities=16% Similarity=0.292 Sum_probs=36.4
Q ss_pred CCcccHHHHHHHHHHcCCCCCCcHHHH---HHHHHHHcCCCCCceeHHHHHHHHHhCCcccc
Q 027734 159 DGLISVEELGLVLSALGLNEGNKIENC---KKMIRKVDVDGDGMVNFDEFRRMMKAGGVLLT 217 (219)
Q Consensus 159 ~G~I~~~e~~~~l~~~~~~~~~~~~~~---~~~~~~~d~~~dg~i~~~eF~~~l~~~~~~~~ 217 (219)
...++.+|++.++...+.. ..+-+ ...++..+.+. ..++.++.+..+...|.+++
T Consensus 34 ~~~~s~~el~~~l~~~~~g---~~~lin~~~~~~k~l~~~~-~~ls~~e~i~ll~~~P~Lik 91 (131)
T PRK12559 34 SNSMTVDELKSILRLTEEG---ATEIISTRSKTFQDLNINI-EELSLNEFYKLIIEHPLMLR 91 (131)
T ss_pred CCcCCHHHHHHHHHHcCCC---HHHHHhcCcHHHHhCCCCc-ccCCHHHHHHHHHhCcceEe
Confidence 3568999999999886533 11111 12344444333 45788999999999998874
No 209
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=39.22 E-value=1.1e+02 Score=20.04 Aligned_cols=56 Identities=21% Similarity=0.275 Sum_probs=36.6
Q ss_pred CCcccHHHHHHHHHHcCCCCCCcHHHHH---HHHHHHcCCCCCceeHHHHHHHHHhCCcccc
Q 027734 159 DGLISVEELGLVLSALGLNEGNKIENCK---KMIRKVDVDGDGMVNFDEFRRMMKAGGVLLT 217 (219)
Q Consensus 159 ~G~I~~~e~~~~l~~~~~~~~~~~~~~~---~~~~~~d~~~dg~i~~~eF~~~l~~~~~~~~ 217 (219)
...+|.+|++.++...|... ..+-++ ..++..+.+ ...++-++.++.|..+|.+++
T Consensus 33 ~~p~t~~el~~~l~~~g~~~--~~~lin~~~~~~~~l~~~-~~~ls~~e~i~~l~~~P~Lik 91 (114)
T TIGR00014 33 KNPPTKSELEAIFAKLGLTV--AREMIRTKEALYKELGLS-DPNLSDQELLDAMVAHPILLE 91 (114)
T ss_pred CCCcCHHHHHHHHHHcCCch--HHHHHhcCCcHHHHcCCC-ccCCCHHHHHHHHHHCcCccc
Confidence 45689999999999887431 011221 223333322 246788999999999999875
No 210
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=38.89 E-value=60 Score=18.77 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=20.1
Q ss_pred cccHHHHHHHHHhhcccCCHHHHHH
Q 027734 70 FITKTELVESLRNLRLMVTDMEAEE 94 (219)
Q Consensus 70 ~is~~el~~~l~~~~~~~~~~~~~~ 94 (219)
.|+.++|..+|+......+..++..
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ 53 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKK 53 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHH
Confidence 4889999999999888888877765
No 211
>COG5562 Phage envelope protein [General function prediction only]
Probab=38.06 E-value=32 Score=23.43 Aligned_cols=28 Identities=21% Similarity=0.446 Sum_probs=20.4
Q ss_pred HHHHHcCCCCCceeHHHHHHHHHhCCcc
Q 027734 188 MIRKVDVDGDGMVNFDEFRRMMKAGGVL 215 (219)
Q Consensus 188 ~~~~~d~~~dg~i~~~eF~~~l~~~~~~ 215 (219)
+...+.++..|..+|+||+..+...+++
T Consensus 77 i~~al~~~qsGqttF~ef~~~la~AGVf 104 (137)
T COG5562 77 IKTALRRHQSGQTTFEEFCSALAEAGVF 104 (137)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHhCCeE
Confidence 3444555678888888888888877764
No 212
>PF13551 HTH_29: Winged helix-turn helix
Probab=37.40 E-value=1.1e+02 Score=19.43 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=39.1
Q ss_pred ccHhHHHHHHHHHHHhcCCCCCcccHHHHHHHH-H-hhcccCCHHHHHHHHHhh
Q 027734 48 TSAYKKAELKRVFATFDKDGDGFITKTELVESL-R-NLRLMVTDMEAEEMVAKV 99 (219)
Q Consensus 48 ~~~~~~~~~~~~F~~~D~~~~g~is~~el~~~l-~-~~~~~~~~~~~~~~~~~~ 99 (219)
++++....+..++.....++.+..+..++..++ . ..+..++...+..++...
T Consensus 58 l~~~~~~~l~~~~~~~p~~g~~~~t~~~l~~~l~~~~~~~~~s~~ti~r~L~~~ 111 (112)
T PF13551_consen 58 LSEEQRAQLIELLRENPPEGRSRWTLEELAEWLIEEEFGIDVSPSTIRRILKRA 111 (112)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCcccHHHHHHHHHHhccCccCCHHHHHHHHHHC
Confidence 788888888888887655544578999999966 3 356678888888877653
No 213
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=37.05 E-value=27 Score=20.38 Aligned_cols=22 Identities=14% Similarity=0.513 Sum_probs=19.3
Q ss_pred hhhcCCCCCcccHHHHHHHHHH
Q 027734 152 DVFDKDKDGLISVEELGLVLSA 173 (219)
Q Consensus 152 ~~~D~~~~G~I~~~e~~~~l~~ 173 (219)
+.||+..+.+|+.++++++...
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 4689999999999999999865
No 214
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=36.43 E-value=25 Score=34.38 Aligned_cols=73 Identities=16% Similarity=0.155 Sum_probs=48.8
Q ss_pred CCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHH-HHHHcCCCCCceeHHHHHHHHHh
Q 027734 139 GGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKM-IRKVDVDGDGMVNFDEFRRMMKA 211 (219)
Q Consensus 139 ~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~-~~~~d~~~dg~i~~~eF~~~l~~ 211 (219)
.+..+.+...++|..+|.+..|+|...++..+++.+..++++.+..-..+ --.+-...+|.|++.+-...+..
T Consensus 1411 Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1411 LSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKRKLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred CCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCceeeeeecCcCCCCeeehhhHHHHHHH
Confidence 44677888999999999999999999999999998865543322111111 11223345666666665555543
No 215
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=36.03 E-value=1.2e+02 Score=19.47 Aligned_cols=52 Identities=25% Similarity=0.280 Sum_probs=31.9
Q ss_pred ccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCC
Q 027734 71 ITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGG 122 (219)
Q Consensus 71 is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~ 122 (219)
+...++.-++..+...++++++..+...+-..+....+-.+.-..+......
T Consensus 20 vP~~Dy~PLlALL~r~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt~~ 71 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRRLTDDEVAEVAAELAARGDPPVDRIDIGVAITRVTDE 71 (96)
T ss_dssp B-HHHHHHHHHHHTTTS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHHCSS
T ss_pred CCCCccHHHHHHhcccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcC
Confidence 6667777777777777888888888877755554444555555555544433
No 216
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=35.50 E-value=56 Score=20.04 Aligned_cols=44 Identities=14% Similarity=0.211 Sum_probs=27.1
Q ss_pred hhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcC
Q 027734 145 DDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDV 194 (219)
Q Consensus 145 ~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~ 194 (219)
..++.+...-- +.|+||.+++..+|.... ++.+.+..++..+..
T Consensus 7 ~~i~~Li~~gK--~~G~lT~~eI~~~L~~~~----~~~e~id~i~~~L~~ 50 (82)
T PF03979_consen 7 EAIKKLIEKGK--KKGYLTYDEINDALPEDD----LDPEQIDEIYDTLED 50 (82)
T ss_dssp HHHHHHHHHHH--HHSS-BHHHHHHH-S-S-------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHh--hcCcCCHHHHHHHcCccC----CCHHHHHHHHHHHHH
Confidence 44555444432 578999999999987544 466788888888753
No 217
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=34.71 E-value=58 Score=21.23 Aligned_cols=63 Identities=21% Similarity=0.233 Sum_probs=39.1
Q ss_pred HhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHH---HHHHHHcCCCC-CceeHHHHHHHHHhCCcccc
Q 027734 151 FDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCK---KMIRKVDVDGD-GMVNFDEFRRMMKAGGVLLT 217 (219)
Q Consensus 151 F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~---~~~~~~d~~~d-g~i~~~eF~~~l~~~~~~~~ 217 (219)
|...|... ..++.+|+..++...+.+. .+.++ ..++..+.+.. ..++-++.++.|...|.+++
T Consensus 26 ~~~idi~~-~~~~~~el~~~~~~~~~~~---~~l~~~~~~~~~~l~~~~~~~~~s~~e~~~~l~~~p~Lik 92 (111)
T cd03036 26 YTAIDIVE-EPPSKEELKKWLEKSGLPL---KKFFNTSGKSYRELGLKDKLPSLSEEEALELLSSDGMLIK 92 (111)
T ss_pred eEEecccC-CcccHHHHHHHHHHcCCCH---HHHHhcCCchHHhCCcccccccCCHHHHHHHHHhCcCeee
Confidence 33444433 4688999999998887531 11111 13444443321 24578999999999998874
No 218
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=33.71 E-value=76 Score=18.57 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=31.1
Q ss_pred CCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCC
Q 027734 67 GDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANG 103 (219)
Q Consensus 67 ~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~ 103 (219)
.++.++..++...+...+...+...+...++..+.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 4678999999999988888888899999888887664
No 219
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.52 E-value=1.9e+02 Score=21.00 Aligned_cols=114 Identities=15% Similarity=0.160 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhh----CCCCCCcccHHHHHHHHHhhcCCCcccc
Q 027734 52 KKAELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKV----DANGDGLIEFDEFCMLYEGMMGGDRQEK 127 (219)
Q Consensus 52 ~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~----d~~~~g~i~~~eF~~~~~~~~~~~~~~~ 127 (219)
.+..+++.|..+|+..=...+.+++.+++..-+.......+..+.... +... . |+.+|+..+..-..-...-.
T Consensus 51 Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~NA~~~l~i~~-e--sf~~ylW~fv~~~Pi~~~~~ 127 (179)
T TIGR00624 51 KRENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIANARAALQLEQ-N--DLVEFLWSFVNHQPQPRQRP 127 (179)
T ss_pred hHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHH-c--cHHHHHHhccCCCCccCCcc
Confidence 456788999999999888899999999887665544444444333211 1111 1 78888766532111100000
Q ss_pred CCCCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCC
Q 027734 128 GGAGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGL 176 (219)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~ 176 (219)
.....+...+....+.+.+-+.|-.++...-...+|...|+
T Consensus 128 --------~~~~~p~~t~~S~~lskdLKkrGfkFvGpt~~ysfmqA~G~ 168 (179)
T TIGR00624 128 --------TDSEIPSSTPESKAMSKELKKRGFRFVGPTICYALMQATGM 168 (179)
T ss_pred --------ccccCCCCCHHHHHHHHHHHHcCCeecChHHHHHHHHHHCC
Confidence 00011122233556666666677777777777777777774
No 220
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=32.97 E-value=98 Score=19.02 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=36.1
Q ss_pred CCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHhC
Q 027734 158 KDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKAG 212 (219)
Q Consensus 158 ~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~ 212 (219)
..|.|+.++...+...- -..+..+.++.... ..|...+..|.+++...
T Consensus 26 ~~~Vit~e~~~~I~a~~-----T~~~kar~Lld~l~--~kG~~A~~~F~~~L~e~ 73 (82)
T cd08330 26 GKKVITQEQYSEVRAEK-----TNQEKMRKLFSFVR--SWGASCKDIFYQILREE 73 (82)
T ss_pred HCCCCCHHHHHHHHcCC-----CcHHHHHHHHHHHH--ccCHHHHHHHHHHHHHh
Confidence 46799999887776432 25667888888875 47889999999999743
No 221
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=32.83 E-value=72 Score=21.57 Aligned_cols=55 Identities=16% Similarity=0.275 Sum_probs=35.9
Q ss_pred CCcccHHHHHHHHHHcCCCCCCcHHHH---HHHHHHHcCCCCCceeHHHHHHHHHhCCcccc
Q 027734 159 DGLISVEELGLVLSALGLNEGNKIENC---KKMIRKVDVDGDGMVNFDEFRRMMKAGGVLLT 217 (219)
Q Consensus 159 ~G~I~~~e~~~~l~~~~~~~~~~~~~~---~~~~~~~d~~~dg~i~~~eF~~~l~~~~~~~~ 217 (219)
....+.+|+..++...+.. .++-+ ...++..+.+. ..++.+|.+..+..+|.+++
T Consensus 34 ~~~~~~~eL~~~l~~~~~g---~~~lin~~~~~~k~l~~~~-~~ls~~e~i~ll~~~p~Lik 91 (131)
T PRK01655 34 SSPLTIDEIKQILRMTEDG---TDEIISTRSKVFQKLNVDV-ESLSLQDLIKLISDNPGLLR 91 (131)
T ss_pred CChhhHHHHHHHHHHhcCC---HHHHHhcCcHHHHhCCCCc-ccCCHHHHHHHHHhCcceEe
Confidence 4567888999999888532 11111 12344443332 46888999999999998875
No 222
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=32.49 E-value=2e+02 Score=21.11 Aligned_cols=82 Identities=20% Similarity=0.289 Sum_probs=49.2
Q ss_pred CCCCcccHHHHHHHHHhhcCCCccccCCCCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHH-HHHHHHHHcCCCCCC
Q 027734 102 NGDGLIEFDEFCMLYEGMMGGDRQEKGGAGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVE-ELGLVLSALGLNEGN 180 (219)
Q Consensus 102 ~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~-e~~~~l~~~~~~~~~ 180 (219)
+=||.|+.+++...+...... ...+.+++. --++.||.. -|-+++..++.
T Consensus 9 DFDGTITl~Ds~~~itdtf~~----------------------~e~k~l~~~---vls~tiS~rd~~g~mf~~i~~---- 59 (220)
T COG4359 9 DFDGTITLNDSNDYITDTFGP----------------------GEWKALKDG---VLSKTISFRDGFGRMFGSIHS---- 59 (220)
T ss_pred cCCCceEecchhHHHHhccCc----------------------hHHHHHHHH---HhhCceeHHHHHHHHHHhcCC----
Confidence 447899999998888766544 333334433 345667654 45566666553
Q ss_pred cHHHHHHHHHH-HcCCCCCceeHHHHHHHHHhCCccc
Q 027734 181 KIENCKKMIRK-VDVDGDGMVNFDEFRRMMKAGGVLL 216 (219)
Q Consensus 181 ~~~~~~~~~~~-~d~~~dg~i~~~eF~~~l~~~~~~~ 216 (219)
+.+|+.+++.. .-.+ =.+.||.+++......+
T Consensus 60 s~~Eile~llk~i~Id----p~fKef~e~ike~di~f 92 (220)
T COG4359 60 SLEEILEFLLKDIKID----PGFKEFVEWIKEHDIPF 92 (220)
T ss_pred CHHHHHHHHHhhcccC----ccHHHHHHHHHHcCCCE
Confidence 33555555443 3222 24789999988776543
No 223
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=32.11 E-value=1.1e+02 Score=27.36 Aligned_cols=60 Identities=13% Similarity=0.142 Sum_probs=46.2
Q ss_pred hHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHh
Q 027734 143 EGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKA 211 (219)
Q Consensus 143 ~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 211 (219)
.....+.+|+.....+.-.+..+.+...+ .+++++..+..++...++.|+++.|..+..+
T Consensus 402 a~~aA~~iF~nv~~p~~~~i~ld~~~~f~---------~~E~a~~~~slfe~~~~~~Itrs~~~~~iv~ 461 (714)
T KOG4629|consen 402 AKIAARKIFKNVAKPGVILIDLDDLLRFM---------GDEEAERAFSLFEGASDENITRSSFKEWIVN 461 (714)
T ss_pred HHHHHHHHHhccCCCCccchhhhhhhhcC---------CHHHHHHHHHhhhhhcccCccHHHHHHHHHH
Confidence 34456778888888777788888876554 6678888888888766777999999887643
No 224
>TIGR01550 DOC_P1 death-on-curing family protein. A similar region, with K replaced by G, is found in the huntingtin interacting protein (HYPE) family.
Probab=30.80 E-value=1.7e+02 Score=19.55 Aligned_cols=51 Identities=14% Similarity=0.194 Sum_probs=36.4
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCc-eeHHHHHHHHH
Q 027734 157 DKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGM-VNFDEFRRMMK 210 (219)
Q Consensus 157 ~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~-i~~~eF~~~l~ 210 (219)
|++.....--+..+|...|.....+++++..+....- .|. ++.+++.++++
T Consensus 69 DGNKRta~~~~~~fL~~NG~~l~~~~~e~~~~~~~vA---~~~~~~~e~i~~wl~ 120 (121)
T TIGR01550 69 NANKRTALNALLLFLELNGYEFTDSPEELIDFTVGVA---TGETISVESLADWLR 120 (121)
T ss_pred cccHHHHHHHHHHHHHHCCcCCCCCHHHHHHHHHHHH---CCCCCCHHHHHHHHh
Confidence 3455666666667778888777667777777777664 344 89999998875
No 225
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=30.38 E-value=1.5e+02 Score=23.91 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=18.2
Q ss_pred CCcccHHHHHHHHHhhcccCCHHHHHHHHHhhC
Q 027734 68 DGFITKTELVESLRNLRLMVTDMEAEEMVAKVD 100 (219)
Q Consensus 68 ~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d 100 (219)
.|.||++|-...+++.........++.+++.++
T Consensus 300 ~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg 332 (343)
T TIGR03573 300 SGRITREEAIELVKEYDGEFPKEDLEYFLKYLG 332 (343)
T ss_pred cCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC
Confidence 466666666666655433334455555555553
No 226
>KOG0871 consensus Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=30.08 E-value=1.8e+02 Score=20.23 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=23.1
Q ss_pred HHhhhcCCCCCcccHHHHHHHHHHcCCCC
Q 027734 150 AFDVFDKDKDGLISVEELGLVLSALGLNE 178 (219)
Q Consensus 150 ~F~~~D~~~~G~I~~~e~~~~l~~~~~~~ 178 (219)
+=+.++.+..-.|..+++..+|..+|+..
T Consensus 55 Aneic~~e~KKTIa~EHV~KALe~LgF~e 83 (156)
T KOG0871|consen 55 ANEICNKEAKKTIAPEHVIKALENLGFGE 83 (156)
T ss_pred HHHHHhHHhcccCCHHHHHHHHHHcchHH
Confidence 44556666777999999999999999763
No 227
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=29.68 E-value=1.1e+02 Score=21.37 Aligned_cols=33 Identities=12% Similarity=0.271 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q 027734 51 YKKAELKRVFATFDKDGDGFITKTELVESLRNL 83 (219)
Q Consensus 51 ~~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~ 83 (219)
.....+.......|..+.+++|.+|++.++-.+
T Consensus 66 ~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~i 98 (148)
T PF12486_consen 66 TQLQQLADRLNQLEEQRGKYMTISELKTAVYQI 98 (148)
T ss_pred HHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHH
Confidence 345566666777888888889999999877553
No 228
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=28.97 E-value=65 Score=15.84 Aligned_cols=15 Identities=20% Similarity=0.428 Sum_probs=8.5
Q ss_pred CCceeHHHHHHHHHh
Q 027734 197 DGMVNFDEFRRMMKA 211 (219)
Q Consensus 197 dg~i~~~eF~~~l~~ 211 (219)
.|+|+++|++....+
T Consensus 2 ~~~i~~~~~~d~a~r 16 (33)
T PF09373_consen 2 SGTISKEEYLDMASR 16 (33)
T ss_pred CceecHHHHHHHHHH
Confidence 456666666655443
No 229
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=28.47 E-value=1e+02 Score=16.47 Aligned_cols=39 Identities=18% Similarity=0.224 Sum_probs=26.6
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHH
Q 027734 164 VEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRM 208 (219)
Q Consensus 164 ~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~ 208 (219)
.+|...+|..+|+ ++.++..++..... ...++.++.++.
T Consensus 3 ~~d~~~AL~~LGy----~~~e~~~av~~~~~--~~~~~~e~~ik~ 41 (47)
T PF07499_consen 3 LEDALEALISLGY----SKAEAQKAVSKLLE--KPGMDVEELIKQ 41 (47)
T ss_dssp HHHHHHHHHHTTS-----HHHHHHHHHHHHH--STTS-HHHHHHH
T ss_pred HHHHHHHHHHcCC----CHHHHHHHHHHhhc--CCCCCHHHHHHH
Confidence 3677888888885 66788888888864 344556766654
No 230
>PF03683 UPF0175: Uncharacterised protein family (UPF0175); InterPro: IPR005368 This entry contains small proteins of unknown function.
Probab=28.01 E-value=1.3e+02 Score=18.16 Aligned_cols=10 Identities=30% Similarity=0.498 Sum_probs=4.7
Q ss_pred CCcccHHHHH
Q 027734 159 DGLISVEELG 168 (219)
Q Consensus 159 ~G~I~~~e~~ 168 (219)
.|.||...-.
T Consensus 32 ~g~iS~gkAA 41 (76)
T PF03683_consen 32 EGKISLGKAA 41 (76)
T ss_pred cCCCCHHHHH
Confidence 4555544433
No 231
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=27.60 E-value=1.8e+02 Score=19.05 Aligned_cols=53 Identities=17% Similarity=0.145 Sum_probs=34.8
Q ss_pred CCcccHHHHHHHHHHcCCCCCCcHHHH---HHHHHHHcCCCCCceeHHHHHHHHHhCCcccc
Q 027734 159 DGLISVEELGLVLSALGLNEGNKIENC---KKMIRKVDVDGDGMVNFDEFRRMMKAGGVLLT 217 (219)
Q Consensus 159 ~G~I~~~e~~~~l~~~~~~~~~~~~~~---~~~~~~~d~~~dg~i~~~eF~~~l~~~~~~~~ 217 (219)
..-+|.+|++.++...|.. .-+ -..++..+.+ ...++-++.++.|..+|.+++
T Consensus 34 ~~p~s~~eL~~~l~~~g~~-----~l~n~~~~~~r~~~~~-~~~ls~~e~~~ll~~~P~Lik 89 (113)
T cd03033 34 TEPWTAETLRPFFGDLPVA-----EWFNPAAPRVKSGEVV-PEALDEEEALALMIADPLLIR 89 (113)
T ss_pred cCCCCHHHHHHHHHHcCHH-----HHHhcccHHHHhcCCC-ccCCCHHHHHHHHHhCcceee
Confidence 3468899999999877632 111 2233333322 246788999999999998874
No 232
>COG4807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.52 E-value=2e+02 Score=19.57 Aligned_cols=125 Identities=16% Similarity=0.082 Sum_probs=58.7
Q ss_pred HHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCccccCCCCCCCCCC-CCCCChHhhHHHHHhh
Q 027734 75 ELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKGGAGDGEGGG-GGGADEGDDLKDAFDV 153 (219)
Q Consensus 75 el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~F~~ 153 (219)
.+.+++..-+...+.+++....++-|.++=...+=-....++.++...........+.++... .........++-+|..
T Consensus 20 ~lv~i~~~~n~~~t~edv~~yLkKedeeGfq~cpd~~l~~fL~GLI~qkRGkde~~P~p~ve~~inNNivLkKLRiAf~l 99 (155)
T COG4807 20 DLVRILALGNVEATAEDVAVYLKKEDEEGFQRCPDIVLSSFLNGLIYQKRGKDESAPAPEVERRINNNIVLKKLRIAFSL 99 (155)
T ss_pred HHHHHHHhcCcccCHHHHHHHHHHhhHhHHhhCcHHHHHHHhcchheeecccccCCCCCcceeeecchhhHHhHhHhhhc
Confidence 344555544555555666555555554443333333334444444333222222222222221 1123345566777765
Q ss_pred hcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHh
Q 027734 154 FDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKA 211 (219)
Q Consensus 154 ~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 211 (219)
-+. ++..++..-+++. +.-|+..+|+.=|. ++=+-.=++|++++.+
T Consensus 100 K~~---------Dm~~I~~~~~f~v--S~pElsAlfR~~~h-kN~r~CGDq~lR~FLk 145 (155)
T COG4807 100 KTD---------DMLAILTEQQFRV--SMPELSALFRAPDH-KNFRECGDQFLRYFLK 145 (155)
T ss_pred ccc---------hHHHHHhccCccc--ccHHHHHHHhCCCc-cchhhhHHHHHHHHHH
Confidence 443 3666666666554 66677777775442 1222222455555443
No 233
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=27.04 E-value=1e+02 Score=17.18 Aligned_cols=22 Identities=14% Similarity=0.460 Sum_probs=14.6
Q ss_pred ChHHHHHHHHHHHHHHHHHhhc
Q 027734 1 MVVSILLLAVLFIAGFINIFVY 22 (219)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (219)
|.++.+++-+|++.++.....+
T Consensus 1 M~il~~LIpiSl~l~~~~l~~f 22 (51)
T TIGR00847 1 MEILTILIPISLLLGGVGLVAF 22 (51)
T ss_pred CchHHHHHHHHHHHHHHHHHHH
Confidence 5666677777777776665554
No 234
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=26.73 E-value=1.3e+02 Score=20.66 Aligned_cols=51 Identities=16% Similarity=0.113 Sum_probs=38.2
Q ss_pred CCCcccHHHHHHHHHHcCC-------CCCCcHHHHHHHHHHHcCCCCC-ceeHHHHHHH
Q 027734 158 KDGLISVEELGLVLSALGL-------NEGNKIENCKKMIRKVDVDGDG-MVNFDEFRRM 208 (219)
Q Consensus 158 ~~G~I~~~e~~~~l~~~~~-------~~~~~~~~~~~~~~~~d~~~dg-~i~~~eF~~~ 208 (219)
++-.||.+||.+++..-.- =..+..+++..+.+.+...+.+ .++..|-++.
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 6778999999999976421 1235778999999999876655 4998887764
No 235
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=26.38 E-value=1.7e+02 Score=18.12 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=11.1
Q ss_pred CCCcccHHHHHHHHHhh
Q 027734 67 GDGFITKTELVESLRNL 83 (219)
Q Consensus 67 ~~g~is~~el~~~l~~~ 83 (219)
.||.++.+|...+...+
T Consensus 12 aDG~i~~~E~~~i~~~~ 28 (104)
T cd07177 12 ADGRVDEEEIAAIEALL 28 (104)
T ss_pred hcCCCCHHHHHHHHHHH
Confidence 37777777766655444
No 236
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=26.34 E-value=2e+02 Score=18.96 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=36.3
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHc
Q 027734 147 LKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVD 193 (219)
Q Consensus 147 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d 193 (219)
+-.+|-..+.-++...+..+++.+|...|... ..+.++.++..+.
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~--d~e~i~~visel~ 47 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEI--DDERINLVLSELK 47 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCccc--CHHHHHHHHHHhc
Confidence 34567777887888899999999999999654 7788888888873
No 237
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=26.33 E-value=1.6e+02 Score=21.26 Aligned_cols=36 Identities=28% Similarity=0.332 Sum_probs=28.8
Q ss_pred CCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhC
Q 027734 65 KDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVD 100 (219)
Q Consensus 65 ~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d 100 (219)
-|.+|.+..+++...++.-+...+.+.+.++...-|
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~ 63 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDD 63 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCC
Confidence 478999999999998876555678888888886544
No 238
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=26.17 E-value=1.4e+02 Score=21.73 Aligned_cols=38 Identities=32% Similarity=0.449 Sum_probs=24.0
Q ss_pred cCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCC
Q 027734 64 DKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDA 101 (219)
Q Consensus 64 D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~ 101 (219)
..+.+|+++.+++.+.+..-+...+.+++..++..-++
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K 63 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDK 63 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCC
Confidence 45789999999999988876666778888888876443
No 239
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=25.97 E-value=1.8e+02 Score=24.76 Aligned_cols=66 Identities=20% Similarity=0.264 Sum_probs=46.7
Q ss_pred HHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHH---HHcC-----CCCCceeHHHHHHHHHhCCcc
Q 027734 148 KDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIR---KVDV-----DGDGMVNFDEFRRMMKAGGVL 215 (219)
Q Consensus 148 ~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~---~~d~-----~~dg~i~~~eF~~~l~~~~~~ 215 (219)
..+|..+-..+++.++.-.|.++|+..|+.. ++--++.++. ..|. ..-+.++.+.|.+++.+.=.+
T Consensus 89 DLLFyLiaegq~ekipihKFiTALkstGLrt--sDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~sSI~l 162 (622)
T KOG0506|consen 89 DLLFYLIAEGQSEKIPIHKFITALKSTGLRT--SDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFSSIVL 162 (622)
T ss_pred hhhhHHhhcCCcCcccHHHHHHHHHHcCCCc--CCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhccchhH
Confidence 4578888877789999999999999999764 3334444443 3342 234569999999998665443
No 240
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.91 E-value=1.1e+02 Score=25.30 Aligned_cols=59 Identities=19% Similarity=0.212 Sum_probs=43.2
Q ss_pred HhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHH
Q 027734 144 GDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRR 207 (219)
Q Consensus 144 ~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~ 207 (219)
.....++|-.+.. -+|+||...-+.-+-.-. ++...+-.+++..|.|+||.++-+||.-
T Consensus 443 k~~yde~fy~l~p-~~gk~sg~~ak~~mv~sk----lpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 443 KPTYDEIFYTLSP-VNGKLSGRNAKKEMVKSK----LPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred CcchHhhhhcccc-cCceeccchhHHHHHhcc----CchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 3455677777765 468888776665554433 3455788899999999999999999964
No 241
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=25.88 E-value=3.8e+02 Score=24.41 Aligned_cols=139 Identities=12% Similarity=0.148 Sum_probs=78.8
Q ss_pred HhHHHHHHHHHHHh-cCCCC---CcccHHHHHHHHHhhccc-CCHHHHHHHHHhhCCCCCC-cccHHHHHHHHHhhcCCC
Q 027734 50 AYKKAELKRVFATF-DKDGD---GFITKTELVESLRNLRLM-VTDMEAEEMVAKVDANGDG-LIEFDEFCMLYEGMMGGD 123 (219)
Q Consensus 50 ~~~~~~~~~~F~~~-D~~~~---g~is~~el~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g-~i~~~eF~~~~~~~~~~~ 123 (219)
..+...+..+++.+ |-|+- -+=+...|+++-+.+... .+-..+..+|...+.+++. .++..+.+..+...+...
T Consensus 375 ~wdhp~~tel~q~lad~nnvKfsaYRtAmKlr~LQK~l~ldlv~ltl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l 454 (966)
T KOG4286|consen 375 CWDHPKMTELYQSLADLNNVKFSAYRTAMKLRRLQKALCLDLLSLSLALDALDQHNLKQNDQPMDILQIINCLTTIYDRL 454 (966)
T ss_pred hccchHHHHHHHHHHHhcCeeehhHHHHHHHHHHHHHHHhccccHHHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHH
Confidence 33444455555544 22321 222333444444444442 4556778888888877644 445555555444433221
Q ss_pred ccccCCCCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCC
Q 027734 124 RQEKGGAGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDG 196 (219)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~ 196 (219)
....+.-.. ...-....+...++.||...+|.|..-+|+..+..+..-. .++....+|...-.++
T Consensus 455 ~e~~g~~v~------v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~i~lck~~--leek~~ylF~~vA~~~ 519 (966)
T KOG4286|consen 455 EQEHGNLVN------VPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGIISLCKAH--LEDKYRYLFKQVASST 519 (966)
T ss_pred HHHcccccc------cchHHHHHHHHHHHhcccCCCcceEEeeehhhHHHHhcch--hHHHHHHHHHHHcCch
Confidence 111111000 1112334567789999999999999999999888776432 6667788888875433
No 242
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=25.40 E-value=1e+02 Score=20.53 Aligned_cols=54 Identities=22% Similarity=0.181 Sum_probs=33.2
Q ss_pred CCcccHHHHHHHHHHcCCCCCCcHHHH---HHHHHHHcCCCCCceeHHHHHHHHHhCCccc
Q 027734 159 DGLISVEELGLVLSALGLNEGNKIENC---KKMIRKVDVDGDGMVNFDEFRRMMKAGGVLL 216 (219)
Q Consensus 159 ~G~I~~~e~~~~l~~~~~~~~~~~~~~---~~~~~~~d~~~dg~i~~~eF~~~l~~~~~~~ 216 (219)
.-.+|.+++.+++...|.. .++-+ -..++.++. ....++-++-...+...|.++
T Consensus 35 ~~~~s~~eL~~~l~~~g~~---~~~li~t~~~~~r~L~~-~~~~~~~~~~~~~i~~~~~Li 91 (117)
T COG1393 35 KTPPSREELKKILSKLGDG---VEELINTRGTTYRELNL-DKEDLSDEELIEALLENPSLI 91 (117)
T ss_pred cCCCCHHHHHHHHHHcCcc---HHHHHHhccchHHHcCC-cccccChHHHHHHHHhChhhc
Confidence 3458999999999988843 11111 224455552 234667777777777776554
No 243
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=25.17 E-value=73 Score=21.47 Aligned_cols=53 Identities=8% Similarity=0.065 Sum_probs=34.1
Q ss_pred CCcccHHHHHHHHHHcCCCCCCcHHHH---HHHHHHHcCCCCCceeHHHHHHHHHhCCcccc
Q 027734 159 DGLISVEELGLVLSALGLNEGNKIENC---KKMIRKVDVDGDGMVNFDEFRRMMKAGGVLLT 217 (219)
Q Consensus 159 ~G~I~~~e~~~~l~~~~~~~~~~~~~~---~~~~~~~d~~~dg~i~~~eF~~~l~~~~~~~~ 217 (219)
..-+|.+|++.++..+|.. .-+ -..++..+.+ ...++.++.++.|..+|.+++
T Consensus 35 ~~p~t~~eL~~~l~~~g~~-----~lin~~~~~~r~l~~~-~~~ls~~e~i~lm~~~P~LIK 90 (126)
T TIGR01616 35 KEPWHADTLRPYFGNKPVG-----SWFNRAAPRVKSGEVN-PDSIDEASALALMVSDPLLIR 90 (126)
T ss_pred CCCcCHHHHHHHHHHcCHH-----HHHhccchHhhhCCCC-cccCCHHHHHHHHHhCcCeEe
Confidence 3458888888888876521 111 1134444432 246788999999999988764
No 244
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=24.98 E-value=1.4e+02 Score=18.13 Aligned_cols=17 Identities=12% Similarity=0.190 Sum_probs=10.7
Q ss_pred cccHhHHHHHHHHHHHh
Q 027734 47 RTSAYKKAELKRVFATF 63 (219)
Q Consensus 47 ~~~~~~~~~~~~~F~~~ 63 (219)
.+++++.+.+.++....
T Consensus 35 gLs~~d~~~L~~L~~~a 51 (75)
T PF06667_consen 35 GLSEEDEQRLQELYEQA 51 (75)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 45666776676666554
No 245
>TIGR02574 stabl_TIGR02574 putative addiction module component, TIGR02574 family. Members of this family are bacterial proteins, typically are about 75 amino acids long, always found as part of a pair (at least) of two small genes. The other in the pair always belongs to a subfamily of the larger family pfam05016 (although not necessarily scoring above the designated cutoff), which contains plasmid stabilization proteins. It is likely that this protein and its pfam05016 member partner comprise some form of addiction module, although these gene pairs usually are found on the bacterial main chromosome.
Probab=24.48 E-value=1.5e+02 Score=17.04 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=18.3
Q ss_pred ccHhHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 027734 48 TSAYKKAELKRVFATFDKDGDGFITKTELVESL 80 (219)
Q Consensus 48 ~~~~~~~~~~~~F~~~D~~~~g~is~~el~~~l 80 (219)
+++....++.+-+..+..+....++.+|++.-+
T Consensus 28 ~~~~~~~el~~R~~~~~~g~~~~i~~eev~~~i 60 (63)
T TIGR02574 28 LTEAQKAELDRRLADYKADPSKASPWEEVRARI 60 (63)
T ss_pred CCHHHHHHHHHHHHHHHcCCcCCCCHHHHHHHH
Confidence 445555555555666655555556665555443
No 246
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=24.41 E-value=1.6e+02 Score=21.46 Aligned_cols=38 Identities=29% Similarity=0.330 Sum_probs=24.1
Q ss_pred cCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcC
Q 027734 155 DKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDV 194 (219)
Q Consensus 155 D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~ 194 (219)
..+.+|+++.+++.+.+..-+.. ++.+++..++..-++
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~--~t~~~i~~vV~~~~K 63 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLW--VTEEDIREVVETDDK 63 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT----HHHHHHHHHH-SS
T ss_pred ccCCCCCEeHHHHHHHHHHcCCC--CCHHHHHHHHhhCCC
Confidence 56789999999999998886644 588899999887543
No 247
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.29 E-value=3.6e+02 Score=20.92 Aligned_cols=68 Identities=22% Similarity=0.291 Sum_probs=44.3
Q ss_pred HhhHHHHHhhh-cCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHhCC
Q 027734 144 GDDLKDAFDVF-DKDKDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKAGG 213 (219)
Q Consensus 144 ~~~~~~~F~~~-D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~ 213 (219)
...+.+.|..+ |.+.+..|..+-+.+++..+|..+ .+-.+.-+--.++...-+..+.+||+.-+...+
T Consensus 63 ~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p--~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l~ 131 (260)
T KOG3077|consen 63 EKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEP--EDISVLVLAWKLGAATMCEFSREEFLKGMTALG 131 (260)
T ss_pred HHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCc--hhHHHHHHHHHhccchhhhhhHHHHHHHHHHcC
Confidence 34455555554 555557999999999999999754 222222222334566678899999988766544
No 248
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=23.20 E-value=3.1e+02 Score=22.23 Aligned_cols=76 Identities=12% Similarity=0.065 Sum_probs=54.1
Q ss_pred CcccHhHHHHHHHHH--HHhcCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCC
Q 027734 46 SRTSAYKKAELKRVF--ATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGG 122 (219)
Q Consensus 46 ~~~~~~~~~~~~~~F--~~~D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~ 122 (219)
.++..+..-.+.-.| ..+|+.+.|.++..-.+..+..+..+--.+.++.+|..... .+|.+.+-.|..++......
T Consensus 100 ~~id~e~sislllaflLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~isd-s~gim~~i~~~~fl~evlsl 177 (434)
T KOG4301|consen 100 HQIDVEQSISLLLAFLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLISD-SRGIMQEIQRDQFLHEVLSL 177 (434)
T ss_pred ccccHHHHHHHHHHHHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHcc-chHHHHHHHHHHHHHHHHcC
Confidence 445555555454444 46799999999999888888877666667888999998854 46877777777666655443
No 249
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=22.45 E-value=3.2e+02 Score=20.01 Aligned_cols=116 Identities=9% Similarity=0.088 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcccCCHHHHHHHHHhh----CCCCCCcccHHHHHHHHHhhcCCCcccc
Q 027734 52 KKAELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKV----DANGDGLIEFDEFCMLYEGMMGGDRQEK 127 (219)
Q Consensus 52 ~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~----d~~~~g~i~~~eF~~~~~~~~~~~~~~~ 127 (219)
.+..+++.|..+|++.=-..+.+++.+++..-+..-....+..+.... +.... .-||.+|+..+..-.......
T Consensus 52 Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi~NA~~~l~i~~e-~gSf~~ylW~fv~~~p~~~~~- 129 (187)
T PRK10353 52 KRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQN-GEPFADFVWSFVNHQPQVTQA- 129 (187)
T ss_pred HHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHHHHHHHHHHHHHh-cCCHHHHHhhccCCCcccCCc-
Confidence 456788999999998888889999999887655543444444333211 11111 237888876653211110000
Q ss_pred CCCCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHHHcCC
Q 027734 128 GGAGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLSALGL 176 (219)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~ 176 (219)
. .....+...+.-..+.+.+-+.+-.++...-...+|...|+
T Consensus 130 ~-------~~~~~P~~t~~S~~lskdLKkrGFkFvGpt~~ysfmqA~G~ 171 (187)
T PRK10353 130 T-------TLSEIPTSTPASDALSKALKKRGFKFVGTTICYSFMQACGL 171 (187)
T ss_pred c-------chhcCCCCCHHHHHHHHHHHHcCCcccCcHHHHHHHHHHCC
Confidence 0 00000112223345555555566666666666666666664
No 250
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.00 E-value=1.4e+02 Score=26.71 Aligned_cols=97 Identities=11% Similarity=0.209 Sum_probs=56.9
Q ss_pred HhhccchHHHHHHHHHHhcccCCCCCCCcccHhHHHHHHHHHHHhcCCCCCcccHHH-HHHHHHhhcccCCHHHHHHHHH
Q 027734 19 IFVYFPTKKFYAWIQSFFSKTATTTGESRTSAYKKAELKRVFATFDKDGDGFITKTE-LVESLRNLRLMVTDMEAEEMVA 97 (219)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~is~~e-l~~~l~~~~~~~~~~~~~~~~~ 97 (219)
-.++..+..+.+..+++++.....-..-.-.++....++.+...+..|..|.++--- +..++.... ..+.+++..|.
T Consensus 772 rLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~vv~~~~f~c~aiAsw~--np~~~l~~~f~ 849 (885)
T KOG2023|consen 772 RLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGVVSSFIFICDAIASWS--NPEDDLRDEFY 849 (885)
T ss_pred hhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhhhhhhHHHHHHHhccc--ChHHHHHHHHH
Confidence 345556666666666666554443333344455566788888888889888775433 333333332 23355555554
Q ss_pred hh---CCCCCCcccHHHHHHHHH
Q 027734 98 KV---DANGDGLIEFDEFCMLYE 117 (219)
Q Consensus 98 ~~---d~~~~g~i~~~eF~~~~~ 117 (219)
.+ -++.-|..+|++|...+-
T Consensus 850 kiL~g~k~qvg~~nW~~~~~qf~ 872 (885)
T KOG2023|consen 850 KILQGFKNQVGKINWQRFSEQFP 872 (885)
T ss_pred HHHHHHHHHhhhhhHHHHhhcCC
Confidence 43 234457888888876543
No 251
>PF09412 XendoU: Endoribonuclease XendoU; InterPro: IPR018998 This is a entry represents endoribonucleases involved in RNA biosynthesis which has been named XendoU in Xenopus laevis (African clawed frog). XendoU is a U-specific metal dependent enzyme that produces products with a 2'-3' cyclic phosphate termini. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 2C1W_C.
Probab=21.98 E-value=3.5e+02 Score=21.05 Aligned_cols=66 Identities=14% Similarity=0.100 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCC--CCCcccHHHHHHHHHhhcccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 027734 54 AELKRVFATFDKD--GDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGM 119 (219)
Q Consensus 54 ~~~~~~F~~~D~~--~~g~is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 119 (219)
..+..+++.+..+ ..-.+|.+|....-.-+..-+...-++.++.-+-..+--.-+..+|...+..+
T Consensus 64 ~af~~LlDNY~~~tg~~E~~T~ee~~E~~~FLd~i~~T~vmk~~~~fL~~k~~~~~~~~~Fk~~L~~i 131 (265)
T PF09412_consen 64 AAFIALLDNYERDTGVAEVVTPEERQEQDAFLDAIMETKVMKLAHQFLVSKGLAPSDEAEFKKQLKNI 131 (265)
T ss_dssp HHHHHHHHHTTSSSSTTT---HHHHHHHHHHHHHHTTSHHHHHHHHHHHHTTSS-SSHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCcccCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 3455666666443 33456666655433323222233334444433322222456778888777644
No 252
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.45 E-value=2.9e+02 Score=19.21 Aligned_cols=103 Identities=13% Similarity=0.179 Sum_probs=67.5
Q ss_pred ccHhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhh--cccCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCcc
Q 027734 48 TSAYKKAELKRVFATFDKDGDGFITKTELVESLRNL--RLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQ 125 (219)
Q Consensus 48 ~~~~~~~~~~~~F~~~D~~~~g~is~~el~~~l~~~--~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~ 125 (219)
..++.....--+|..+.. ||.++..|..+...-+ .+.++..++..+......-+...+++..|...+...+..
T Consensus 24 adDP~lAa~~Llf~Vm~A--DG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~--- 98 (148)
T COG4103 24 ADDPRLAAAALLFHVMEA--DGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDE--- 98 (148)
T ss_pred CCCHHHHHHHHHHHHHhc--ccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCH---
Confidence 334444444477888755 6778888765543322 346688888888877665566779999999888765544
Q ss_pred ccCCCCCCCCCCCCCCChHhhHHHHHhhhcCCCCCcccHHHHHHHHH
Q 027734 126 EKGGAGDGEGGGGGGADEGDDLKDAFDVFDKDKDGLISVEELGLVLS 172 (219)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~ 172 (219)
....+-+...|+..-. ||.++..|-.-+++
T Consensus 99 ---------------e~R~eli~~mweIa~A--Dg~l~e~Ed~vi~R 128 (148)
T COG4103 99 ---------------EQRLELIGLMWEIAYA--DGELDESEDHVIWR 128 (148)
T ss_pred ---------------HHHHHHHHHHHHHHHc--cccccHHHHHHHHH
Confidence 3555666677777654 56777776544444
No 253
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=21.36 E-value=1.9e+02 Score=18.35 Aligned_cols=50 Identities=12% Similarity=0.191 Sum_probs=35.1
Q ss_pred CCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHcCCCCCceeHHHHHHHHHhCCc
Q 027734 158 KDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKAGGV 214 (219)
Q Consensus 158 ~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~ 214 (219)
+.|.||.++...+-.. + -+.+.+..++..+- ..|.-.|..|++++...|.
T Consensus 32 ~~gIlT~~~~e~I~a~-~----T~~~k~~~LLdiLp--~RG~~AF~~F~~aL~e~~~ 81 (94)
T cd08327 32 QEGILTESHVEEIESQ-T----TSRRKTMKLLDILP--SRGPKAFHAFLDSLEEFPW 81 (94)
T ss_pred hCCCCCHHHHHHHHcc-C----ChHHHHHHHHHHHH--hhChhHHHHHHHHHHHHHH
Confidence 4788999887766532 1 24556777777764 4677889999999976443
No 254
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=20.96 E-value=1.2e+02 Score=17.89 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=16.5
Q ss_pred HHHHHcCCCCCCcHHHHHHHHHHHcCC
Q 027734 169 LVLSALGLNEGNKIENCKKMIRKVDVD 195 (219)
Q Consensus 169 ~~l~~~~~~~~~~~~~~~~~~~~~d~~ 195 (219)
..++.+|++.......+..+++.+|.|
T Consensus 16 dam~~lG~~~~~v~~vl~~LL~lY~~n 42 (65)
T PF10440_consen 16 DAMRQLGFSKKQVRPVLKNLLKLYDGN 42 (65)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 345666765444445677777777654
No 255
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=20.21 E-value=1.9e+02 Score=16.65 Aligned_cols=14 Identities=29% Similarity=0.252 Sum_probs=5.6
Q ss_pred cccHHHHHHHHHHc
Q 027734 161 LISVEELGLVLSAL 174 (219)
Q Consensus 161 ~I~~~e~~~~l~~~ 174 (219)
.++.+|.+.++..+
T Consensus 14 ~Ls~~e~~~~~~~i 27 (66)
T PF02885_consen 14 DLSREEAKAAFDAI 27 (66)
T ss_dssp ---HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 45555555555443
Done!