BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027739
(219 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KGZ|A Chain A, Crystal Structure Analysis Of The Anthranilate
Phosphoribosyltransferase From Erwinia Carotovora
(current Name, Pectobacterium Carotovorum)
pdb|1KGZ|B Chain B, Crystal Structure Analysis Of The Anthranilate
Phosphoribosyltransferase From Erwinia Carotovora
(current Name, Pectobacterium Carotovorum)
pdb|1KHD|A Chain A, Crystal Structure Analysis Of The Anthranilate
Phosphoribosyltransferase From Erwinia Carotovora At 1.9
Resolution (Current Name, Pectobacterium Carotovorum)
pdb|1KHD|B Chain B, Crystal Structure Analysis Of The Anthranilate
Phosphoribosyltransferase From Erwinia Carotovora At 1.9
Resolution (Current Name, Pectobacterium Carotovorum)
pdb|1KHD|C Chain C, Crystal Structure Analysis Of The Anthranilate
Phosphoribosyltransferase From Erwinia Carotovora At 1.9
Resolution (Current Name, Pectobacterium Carotovorum)
pdb|1KHD|D Chain D, Crystal Structure Analysis Of The Anthranilate
Phosphoribosyltransferase From Erwinia Carotovora At 1.9
Resolution (Current Name, Pectobacterium Carotovorum)
Length = 345
Score = 153 bits (386), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 73/177 (41%), Positives = 112/177 (63%), Gaps = 1/177 (0%)
Query: 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXX-DVLEALGVVID 71
D DIVGTGGDG N++NIST ++ +AA+CGAKVAK D+L+A G+ +D
Sbjct: 85 DFADIVGTGGDGTNSINISTASAFVAASCGAKVAKHGNRSVCQPLAGSCDLLQAFGIRLD 144
Query: 72 LDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVV 131
+ E R+ +D+ + F+ + +YH + PVR++LK +T+FN+LGP++NPA P A++
Sbjct: 145 MSAEDSRQALDDLNVCFLFAPQYHTGFRHAMPVRQQLKTRTIFNVLGPLINPARPPKALI 204
Query: 132 GVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDP 188
GVY+ LVL +A AL+ G K A VVH G+DE++ P + ++ +IE + P
Sbjct: 205 GVYSPELVLPIAQALKVLGYKNAAVVHGGGMDEVAIHTPTQVAELNNGEIESYQLSP 261
>pdb|4HKM|A Chain A, Crystal Structure Of An Anthranilate
Phosphoribosyltransferase (Target Id Nysgrc-016600) From
Xanthomonas Campestris
pdb|4HKM|B Chain B, Crystal Structure Of An Anthranilate
Phosphoribosyltransferase (Target Id Nysgrc-016600) From
Xanthomonas Campestris
Length = 346
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 109/176 (61%), Gaps = 3/176 (1%)
Query: 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDP 74
VDIVGTGGDG++T NIST A +AAA GAKVAK D LEALG VI+L P
Sbjct: 81 VDIVGTGGDGSHTFNISTCAXFVAAAGGAKVAKHGNRSVSSKSGSADALEALGAVIELQP 140
Query: 75 EGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVY 134
E V + + GIGF + +HPA K V PVR++ V+T+FNILGP+ NPA P + GV+
Sbjct: 141 EQVAASLAQTGIGFXYAPVHHPAXKVVAPVRREXGVRTIFNILGPLTNPAGSPNILXGVF 200
Query: 135 NENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPG-LILDVTQEKIERFSFDP 188
+ +LV A LQ G +RALVV +G DE+S LG G L+ ++ ++ + P
Sbjct: 201 HPDLVGIQARVLQELGAERALVVWGRDGXDELS-LGAGTLVGELRDGQVHEYEVHP 255
>pdb|1VQU|A Chain A, Crystal Structure Of Anthranilate
Phosphoribosyltransferase 2 (17130499) From Nostoc Sp.
At 1.85 A Resolution
pdb|1VQU|B Chain B, Crystal Structure Of Anthranilate
Phosphoribosyltransferase 2 (17130499) From Nostoc Sp.
At 1.85 A Resolution
Length = 374
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/151 (43%), Positives = 93/151 (61%), Gaps = 1/151 (0%)
Query: 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDP 74
+D GTGGDG++T NIST + +AAA G VAK DVLEALGV + P
Sbjct: 111 IDTCGTGGDGSSTFNISTAVAFVAAAYGVPVAKHGNRSASSLTGSADVLEALGVNLGASP 170
Query: 75 EGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVY 134
E V+ + E GI F+ + +HPA+K V +R+ L+++TVFN+LGP++NP VVG++
Sbjct: 171 EKVQAALQEVGITFLFAPGWHPALKAVATLRRTLRIRTVFNLLGPLVNPLRPTGQVVGLF 230
Query: 135 NENLVLKMANALQRFGLKRALVVHS-EGLDE 164
L+ +A AL G ++A+V+H E LDE
Sbjct: 231 TPKLLTTVAQALDNLGKQKAIVLHGRERLDE 261
>pdb|1V8G|A Chain A, Crystal Structure Of Anthranilate
Phosphoribosyltransferase (Trpd) From Thermus
Thermophilus Hb8
pdb|1V8G|B Chain B, Crystal Structure Of Anthranilate
Phosphoribosyltransferase (Trpd) From Thermus
Thermophilus Hb8
pdb|2ELC|A Chain A, Crystal Structure Of Ttha1842 From Thermus Thermophilus
Hb8
pdb|2ELC|B Chain B, Crystal Structure Of Ttha1842 From Thermus Thermophilus
Hb8
pdb|2ELC|C Chain C, Crystal Structure Of Ttha1842 From Thermus Thermophilus
Hb8
pdb|2ELC|D Chain D, Crystal Structure Of Ttha1842 From Thermus Thermophilus
Hb8
Length = 329
Score = 124 bits (311), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 72/151 (47%), Positives = 97/151 (64%), Gaps = 1/151 (0%)
Query: 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDP 74
+DIVGTGGDG +N+ST A+++AAA G VAK D+LEALGV ++ P
Sbjct: 74 LDIVGTGGDGKGLMNLSTLAALVAAAGGVAVAKHGNRAASSRAGSADLLEALGVDLEAPP 133
Query: 75 EGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVY 134
E V ++E G GF+ + +HPAM+ V PVR +L V+TVFN+LGP+ NPA V+GV+
Sbjct: 134 ERVGEAIEELGFGFLFARVFHPAMRHVAPVRAELGVRTVFNLLGPLTNPAGADAYVLGVF 193
Query: 135 NENLVLKMANALQRFGLKRALVVHSEGLDEM 165
+ + MA AL+R G R LVVH EG DE+
Sbjct: 194 SPEWLAPMAEALERLG-ARGLVVHGEGADEL 223
>pdb|2BPQ|A Chain A, Anthranilate Phosphoribosyltransferase (Trpd) From
Mycobacterium Tuberculosis (Apo Structure)
pdb|2BPQ|B Chain B, Anthranilate Phosphoribosyltransferase (Trpd) From
Mycobacterium Tuberculosis (Apo Structure)
Length = 373
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 104/180 (57%), Gaps = 6/180 (3%)
Query: 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDL 72
DAVD+VGTGGDG NTVN+ST A+I+ AA G V K D LEALGV IDL
Sbjct: 101 DAVDVVGTGGDGVNTVNLSTMAAIVVAAAGVPVVKHGNRAASSLSGGADTLEALGVRIDL 160
Query: 73 DPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVG 132
P+ V R + E GIGF + ++HP+ + VR+++ V TVFN+LGP+ NPA ++G
Sbjct: 161 GPDLVARSLAEVGIGFCFAPRFHPSYRHAAAVRREIGVPTVFNLLGPLTNPARPRAGLIG 220
Query: 133 VYNENLVLKMANALQRFGLKRA--LVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPC 189
+L MA F +R+ LVVH +GLDE++ I V +++ +FDP
Sbjct: 221 CAFADLAEVMAGV---FAARRSSVLVVHGDDGLDELTTTTTSTIWRVAAGSVDKLTFDPA 277
>pdb|3QR9|A Chain A, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (apo Structure)
pdb|3QR9|B Chain B, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (apo Structure)
pdb|3QQS|A Chain A, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs172)
pdb|3QQS|B Chain B, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs172)
pdb|3QQS|C Chain C, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs172)
pdb|3QQS|D Chain D, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs172)
pdb|3QS8|A Chain A, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs174)
pdb|3QS8|B Chain B, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs174)
pdb|3QS8|C Chain C, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs174)
pdb|3QS8|D Chain D, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs174)
pdb|3QSA|A Chain A, Anthranilate Phosphoribosyltransferase (Trpd) From
Mycobacterium Tuberculosis (Complex With Inhibitor
Tamu-A7)
pdb|3QSA|B Chain B, Anthranilate Phosphoribosyltransferase (Trpd) From
Mycobacterium Tuberculosis (Complex With Inhibitor
Tamu-A7)
pdb|3R6C|A Chain A, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs179)
pdb|3R6C|B Chain B, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs179)
pdb|3R88|A Chain A, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs145)
pdb|3R88|B Chain B, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs145)
pdb|3TWP|A Chain A, Crystal Structure Of M. Tuberculosis Trpd In Complex With
An Inhibitor
pdb|3TWP|B Chain B, Crystal Structure Of M. Tuberculosis Trpd In Complex With
An Inhibitor
pdb|3TWP|C Chain C, Crystal Structure Of M. Tuberculosis Trpd In Complex With
An Inhibitor
pdb|3TWP|D Chain D, Crystal Structure Of M. Tuberculosis Trpd In Complex With
An Inhibitor
pdb|3UU1|A Chain A, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs142)
pdb|3UU1|B Chain B, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs142)
pdb|3UU1|C Chain C, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs142)
pdb|3UU1|D Chain D, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs142)
Length = 377
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 104/180 (57%), Gaps = 6/180 (3%)
Query: 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDL 72
DAVD+VGTGGDG NTVN+ST A+I+ AA G V K D LEALGV IDL
Sbjct: 100 DAVDVVGTGGDGVNTVNLSTMAAIVVAAAGVPVVKHGNRAASSLSGGADTLEALGVRIDL 159
Query: 73 DPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVG 132
P+ V R + E GIGF + ++HP+ + VR+++ V TVFN+LGP+ NPA ++G
Sbjct: 160 GPDLVARSLAEVGIGFCFAPRFHPSYRHAAAVRREIGVPTVFNLLGPLTNPARPRAGLIG 219
Query: 133 VYNENLVLKMANALQRFGLKRA--LVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPC 189
+L MA F +R+ LVVH +GLDE++ I V +++ +FDP
Sbjct: 220 CAFADLAEVMAGV---FAARRSSVLVVHGDDGLDELTTTTTSTIWRVAAGSVDKLTFDPA 276
>pdb|1O17|A Chain A, Anthranilate Phosphoribosyl-Transferase (Trpd)
pdb|1O17|B Chain B, Anthranilate Phosphoribosyl-Transferase (Trpd)
pdb|1O17|C Chain C, Anthranilate Phosphoribosyl-Transferase (Trpd)
pdb|1O17|D Chain D, Anthranilate Phosphoribosyl-Transferase (Trpd)
pdb|1GXB|A Chain A, Anthranilate Phosphoribosyltransferase In Complex With
Pyrophosphate And Magnesium
pdb|1GXB|B Chain B, Anthranilate Phosphoribosyltransferase In Complex With
Pyrophosphate And Magnesium
pdb|1GXB|C Chain C, Anthranilate Phosphoribosyltransferase In Complex With
Pyrophosphate And Magnesium
pdb|1GXB|D Chain D, Anthranilate Phosphoribosyltransferase In Complex With
Pyrophosphate And Magnesium
pdb|1ZXY|A Chain A, Anthranilate Phosphoribosyltransferase From Sulfolobus
Solfataricus In Complex With Prpp And Magnesium
pdb|1ZXY|B Chain B, Anthranilate Phosphoribosyltransferase From Sulfolobus
Solfataricus In Complex With Prpp And Magnesium
pdb|1ZXY|C Chain C, Anthranilate Phosphoribosyltransferase From Sulfolobus
Solfataricus In Complex With Prpp And Magnesium
pdb|1ZXY|D Chain D, Anthranilate Phosphoribosyltransferase From Sulfolobus
Solfataricus In Complex With Prpp And Magnesium
pdb|1ZYK|A Chain A, Anthranilate Phosphoribosyltransferase In Complex With
Prpp, Anthranilate And Magnesium
pdb|1ZYK|B Chain B, Anthranilate Phosphoribosyltransferase In Complex With
Prpp, Anthranilate And Magnesium
pdb|1ZYK|C Chain C, Anthranilate Phosphoribosyltransferase In Complex With
Prpp, Anthranilate And Magnesium
pdb|1ZYK|D Chain D, Anthranilate Phosphoribosyltransferase In Complex With
Prpp, Anthranilate And Magnesium
pdb|2GVQ|A Chain A, Anthranilate Phosphoribosyl-Transferase (Trpd) From S.
Solfataricus In Complex With Anthranilate
pdb|2GVQ|B Chain B, Anthranilate Phosphoribosyl-Transferase (Trpd) From S.
Solfataricus In Complex With Anthranilate
pdb|2GVQ|C Chain C, Anthranilate Phosphoribosyl-Transferase (Trpd) From S.
Solfataricus In Complex With Anthranilate
pdb|2GVQ|D Chain D, Anthranilate Phosphoribosyl-Transferase (Trpd) From S.
Solfataricus In Complex With Anthranilate
Length = 345
Score = 117 bits (293), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 102/176 (57%), Gaps = 2/176 (1%)
Query: 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDL 72
+A+D GTGGDG TVN+ST ++IL + VAK DVLEALG I +
Sbjct: 73 NAIDTAGTGGDGLGTVNVSTASAILLSLVNP-VAKHGNRAVSGKSGSADVLEALGYNIIV 131
Query: 73 DPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVG 132
PE + V++ F+ + YHPAMK V VRK L ++T+FNILGP+ NPA + ++G
Sbjct: 132 PPERAKELVNKTNFVFLFAQYYHPAMKNVANVRKTLGIRTIFNILGPLTNPANAKYQLMG 191
Query: 133 VYNENLVLKMANALQRFGLKRALVVHSE-GLDEMSPLGPGLILDVTQEKIERFSFD 187
V++++ + ++ + + ++V+ E G+DE+SP+G + V++ IE +
Sbjct: 192 VFSKDHLDLLSKSAYELDFNKIILVYGEPGIDEVSPIGNTFMKIVSKRGIEEVKLN 247
>pdb|1ZVW|A Chain A, The Crystal Structure Of Trpd (Rv2192c) From Mycobacterium
Tuberculosis In Complex With Prpp And Magnesium
pdb|1ZVW|B Chain B, The Crystal Structure Of Trpd (Rv2192c) From Mycobacterium
Tuberculosis In Complex With Prpp And Magnesium
Length = 378
Score = 117 bits (292), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 75/180 (41%), Positives = 103/180 (57%), Gaps = 6/180 (3%)
Query: 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDL 72
DAVD+VGTGGDG NTVN+ST A+I+ AA G V K D LEALGV IDL
Sbjct: 101 DAVDVVGTGGDGVNTVNLSTXAAIVVAAAGVPVVKHGNRAASSLSGGADTLEALGVRIDL 160
Query: 73 DPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVG 132
P+ V R + E GIGF + ++HP+ + VR+++ V TVFN+LGP+ NPA ++G
Sbjct: 161 GPDLVARSLAEVGIGFCFAPRFHPSYRHAAAVRREIGVPTVFNLLGPLTNPARPRAGLIG 220
Query: 133 VYNENLVLKMANALQRFGLKRA--LVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPC 189
+L A F +R+ LVVH +GLDE++ I V +++ +FDP
Sbjct: 221 CAFADLAEVXAGV---FAARRSSVLVVHGDDGLDELTTTTTSTIWRVAAGSVDKLTFDPA 277
>pdb|3GBR|A Chain A, Anthranilate Phosphoribosyl-Transferase (Trpd) Double
Mutant D83g F149s From S. Solfataricus
pdb|3GBR|B Chain B, Anthranilate Phosphoribosyl-Transferase (Trpd) Double
Mutant D83g F149s From S. Solfataricus
Length = 345
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 108/188 (57%), Gaps = 3/188 (1%)
Query: 1 MIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXX 60
M + A K++ + +A+D GTGG G TVN+ST ++IL + VAK
Sbjct: 62 MRELAIKID-VPNAIDTAGTGGGGLGTVNVSTASAILLSLVNP-VAKHGNRAVSGKSGSA 119
Query: 61 DVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPM 120
DVLEALG I + PE + V++ F+ + YHPAMK V VRK L ++T+FNILGP+
Sbjct: 120 DVLEALGYNIIVPPERAKELVNKTNFVFLSAQYYHPAMKNVANVRKTLGIRTIFNILGPL 179
Query: 121 LNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSE-GLDEMSPLGPGLILDVTQE 179
NPA + ++GV++++ + ++ + + ++V+ E G+DE+SP+G + V++
Sbjct: 180 TNPANAKYQLMGVFSKDHLDLLSKSAYELDFNKIILVYGEPGIDEVSPIGNTFMKIVSKR 239
Query: 180 KIERFSFD 187
IE +
Sbjct: 240 GIEEVKLN 247
>pdb|2W48|A Chain A, Crystal Structure Of The Full-Length Sorbitol Operon
Regulator Sorc From Klebsiella Pneumoniae
pdb|2W48|B Chain B, Crystal Structure Of The Full-Length Sorbitol Operon
Regulator Sorc From Klebsiella Pneumoniae
pdb|2W48|C Chain C, Crystal Structure Of The Full-Length Sorbitol Operon
Regulator Sorc From Klebsiella Pneumoniae
pdb|2W48|D Chain D, Crystal Structure Of The Full-Length Sorbitol Operon
Regulator Sorc From Klebsiella Pneumoniae
Length = 315
Score = 34.3 bits (77), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 112 TVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGL---DEMSPL 168
T+ +L V A+ YNENL L+ Q+FGLK A+V S+GL +++S +
Sbjct: 37 TISRLLKRGREQGIVTIAINYDYNENLWLEQ-QLKQKFGLKEAVVASSDGLLEEEQLSAM 95
Query: 169 G 169
G
Sbjct: 96 G 96
>pdb|1TMO|A Chain A, Trimethylamine N-Oxide Reductase From Shewanella Massilia
Length = 829
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 148 RFGLKRALVVHSEGLD--EMSPLG-PGLILDVTQEKIERFSFDPCK 190
FG H++ + E++PLG P ++++ KI++F +D CK
Sbjct: 608 HFGDGEVWTRHADFRNDPEINPLGTPSGLIEIFSRKIDQFGYDDCK 653
>pdb|3EFB|A Chain A, Crystal Structure Of Probable Sor Operon Regulator From
Shigella Flexneri
pdb|3EFB|B Chain B, Crystal Structure Of Probable Sor Operon Regulator From
Shigella Flexneri
pdb|3EFB|C Chain C, Crystal Structure Of Probable Sor Operon Regulator From
Shigella Flexneri
pdb|3EFB|D Chain D, Crystal Structure Of Probable Sor Operon Regulator From
Shigella Flexneri
Length = 266
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 126 VPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPL 168
V A+ YNENL L+ Q+FGLK +VV DE + L
Sbjct: 2 VTIAINYDYNENLWLEQ-QLKQKFGLKDVVVVSGNDEDEETQL 43
>pdb|3Q3V|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From
Campylobacter Jejuni.
pdb|3Q3V|B Chain B, Crystal Structure Of Phosphoglycerate Kinase From
Campylobacter Jejuni
Length = 403
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 4 YATKVEGLGDAVDIVGTGGDGANTVNISTG 33
+AT V G GD D+V GD ISTG
Sbjct: 349 HATSVVGGGDTADVVARAGDADEXTFISTG 378
>pdb|2P4Z|A Chain A, A Ferredoxin-Like Metallo-Beta-Lactamase Superfamily
Protein From Thermoanaerobacter Tengcongensis
pdb|2P4Z|B Chain B, A Ferredoxin-Like Metallo-Beta-Lactamase Superfamily
Protein From Thermoanaerobacter Tengcongensis
Length = 284
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 14/100 (14%)
Query: 82 DEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLK 141
+E GI + + + + R + V + +++G F + G+ E V
Sbjct: 188 EEDGINVVTGCSHAGILNILETARNRFGVSYIKSLIGG--------FHLRGM-EEEKVKD 238
Query: 142 MANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKI 181
+A ++ +G+K+ L H G+DE G + V ++KI
Sbjct: 239 IARKIEEYGVKKVLTGHCTGIDEY-----GFLKSVLKDKI 273
>pdb|4EV6|A Chain A, The Complete Structure Of Cora Magnesium Transporter From
Methanocaldococcus Jannaschii
pdb|4EV6|B Chain B, The Complete Structure Of Cora Magnesium Transporter From
Methanocaldococcus Jannaschii
pdb|4EV6|C Chain C, The Complete Structure Of Cora Magnesium Transporter From
Methanocaldococcus Jannaschii
pdb|4EV6|D Chain D, The Complete Structure Of Cora Magnesium Transporter From
Methanocaldococcus Jannaschii
pdb|4EV6|E Chain E, The Complete Structure Of Cora Magnesium Transporter From
Methanocaldococcus Jannaschii
Length = 339
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 106 KKLKVKTVFNILGPMLNPACVPFAVVGVYNENL-VLKMANALQRFGLKRALVV 157
+ +K+ + IL + VP + G+Y N L +AN Q F L AL+V
Sbjct: 271 ENIKMNQIMKILTMVTTIFAVPMWITGIYGMNFSYLPLANNPQGFWLVMALMV 323
>pdb|2WRD|A Chain A, Structure Of H2 Japan Hemagglutinin
pdb|2WRD|B Chain B, Structure Of H2 Japan Hemagglutinin
pdb|2WRD|C Chain C, Structure Of H2 Japan Hemagglutinin
Length = 505
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 7 KVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQ 48
KV GLG ++ T D +T+N + +++A G K++K+
Sbjct: 232 KVNGLGSRMEFSWTLLDMWDTINFESTGNLIAPEYGFKISKR 273
>pdb|2WR7|A Chain A, The Structure Of Influenza H2 Human Singapore
Hemagglutinin With Human Receptor
pdb|2WR7|B Chain B, The Structure Of Influenza H2 Human Singapore
Hemagglutinin With Human Receptor
pdb|2WR7|C Chain C, The Structure Of Influenza H2 Human Singapore
Hemagglutinin With Human Receptor
pdb|2WRB|A Chain A, The Structure Of Influenza H2 Human Singapore
Hemagglutinin With Avian Receptor
pdb|2WRB|B Chain B, The Structure Of Influenza H2 Human Singapore
Hemagglutinin With Avian Receptor
pdb|2WRB|C Chain C, The Structure Of Influenza H2 Human Singapore
Hemagglutinin With Avian Receptor
pdb|2WRC|A Chain A, The Structure Of Influenza H2 Human Singapore
Hemagglutinin
pdb|2WRC|B Chain B, The Structure Of Influenza H2 Human Singapore
Hemagglutinin
pdb|2WRC|C Chain C, The Structure Of Influenza H2 Human Singapore
Hemagglutinin
Length = 506
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 7 KVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQ 48
KV GLG ++ T D +T+N + +++A G K++K+
Sbjct: 232 KVNGLGSRMEFSWTLLDMWDTINFESTGNLIAPEYGFKISKR 273
>pdb|2WRE|A Chain A, Structure Of H2 Japan Hemagglutinin With Human Receptor
pdb|2WRE|B Chain B, Structure Of H2 Japan Hemagglutinin With Human Receptor
pdb|2WRE|C Chain C, Structure Of H2 Japan Hemagglutinin With Human Receptor
Length = 505
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 7 KVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQ 48
KV GLG ++ T D +T+N + +++A G K++K+
Sbjct: 232 KVNGLGSRMEFSWTLLDMWDTINFESTGNLIAPEYGFKISKR 273
>pdb|4HFU|A Chain A, Crystal Structure Of Fab 8m2 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|A Chain A, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|B Chain B, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|C Chain C, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|D Chain D, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|E Chain E, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|F Chain F, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|G Chain G, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|H Chain H, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|I Chain I, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
Length = 327
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 7 KVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQ 48
KV GLG ++ T D +T+N + +++A G K++K+
Sbjct: 219 KVNGLGSRMEFSWTLLDMWDTINFESTGNLIAPEYGFKISKR 260
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,939,005
Number of Sequences: 62578
Number of extensions: 217315
Number of successful extensions: 648
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 623
Number of HSP's gapped (non-prelim): 26
length of query: 219
length of database: 14,973,337
effective HSP length: 95
effective length of query: 124
effective length of database: 9,028,427
effective search space: 1119524948
effective search space used: 1119524948
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)