Query 027739
Match_columns 219
No_of_seqs 131 out of 1115
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 14:26:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027739.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027739hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0547 TrpD Anthranilate phos 100.0 8.5E-65 1.8E-69 460.4 20.1 195 1-196 63-259 (338)
2 PLN02641 anthranilate phosphor 100.0 4.3E-61 9.4E-66 438.1 20.3 192 1-193 62-253 (343)
3 PRK07394 hypothetical protein; 100.0 1.3E-60 2.8E-65 434.9 20.9 192 1-193 68-267 (342)
4 PRK08136 glycosyl transferase 100.0 1.6E-58 3.4E-63 417.4 20.2 187 1-190 66-258 (317)
5 PF00591 Glycos_transf_3: Glyc 100.0 2.8E-59 6.1E-64 408.7 12.3 178 13-190 2-179 (252)
6 PRK09522 bifunctional glutamin 100.0 2.6E-58 5.5E-63 440.2 20.0 189 1-189 259-448 (531)
7 TIGR01245 trpD anthranilate ph 100.0 1.3E-57 2.9E-62 413.2 19.8 190 1-190 56-248 (330)
8 PRK00188 trpD anthranilate pho 100.0 2.5E-57 5.4E-62 412.7 20.3 189 1-189 62-251 (339)
9 PRK14607 bifunctional glutamin 100.0 2.9E-57 6.2E-62 433.4 20.6 192 1-193 254-447 (534)
10 PRK09071 hypothetical protein; 100.0 1.7E-55 3.8E-60 398.6 20.0 185 1-188 67-254 (323)
11 KOG1438 Anthranilate phosphori 100.0 4.8E-51 1E-55 358.5 11.0 178 13-190 103-284 (373)
12 PRK06078 pyrimidine-nucleoside 100.0 9.8E-33 2.1E-37 257.8 13.4 145 1-152 62-227 (434)
13 TIGR02644 Y_phosphoryl pyrimid 100.0 1.2E-29 2.5E-34 235.6 11.3 158 1-165 60-240 (405)
14 PRK04350 thymidine phosphoryla 100.0 5.1E-29 1.1E-33 235.3 13.4 152 1-158 140-308 (490)
15 PRK05820 deoA thymidine phosph 99.9 1.2E-23 2.6E-28 197.1 10.5 149 1-152 63-234 (440)
16 TIGR02645 ARCH_P_rylase putati 99.9 4.2E-23 9.2E-28 195.2 11.2 154 1-158 145-316 (493)
17 TIGR02643 T_phosphoryl thymidi 99.9 4.5E-23 9.8E-28 192.8 7.4 154 1-157 62-238 (437)
18 TIGR03327 AMP_phos AMP phospho 99.9 2E-21 4.4E-26 184.0 10.6 149 1-152 146-312 (500)
19 COG0213 DeoA Thymidine phospho 97.5 0.00013 2.7E-09 68.7 5.6 142 13-158 78-237 (435)
20 TIGR01457 HAD-SF-IIA-hyp2 HAD- 80.0 24 0.00053 30.5 10.3 119 14-149 5-133 (249)
21 COG1393 ArsC Arsenate reductas 79.6 2.2 4.9E-05 33.5 3.3 90 66-159 6-99 (117)
22 PF13344 Hydrolase_6: Haloacid 71.6 4.3 9.3E-05 30.6 2.9 70 14-83 2-76 (101)
23 PRK10444 UMP phosphatase; Prov 66.0 22 0.00049 31.0 6.7 71 14-84 5-80 (248)
24 COG0106 HisA Phosphoribosylfor 65.2 33 0.00072 30.5 7.5 81 72-155 31-126 (241)
25 cd01554 EPT-like Enol pyruvate 63.0 14 0.0003 34.0 5.0 96 41-152 96-198 (408)
26 PLN02428 lipoic acid synthase 62.1 47 0.001 31.0 8.3 110 34-153 197-317 (349)
27 COG0563 Adk Adenylate kinase a 61.6 35 0.00076 28.4 6.8 90 16-110 4-105 (178)
28 PRK05703 flhF flagellar biosyn 58.5 1E+02 0.0022 29.3 10.1 135 13-158 222-366 (424)
29 TIGR01458 HAD-SF-IIA-hyp3 HAD- 58.2 30 0.00065 30.1 6.1 72 14-86 5-86 (257)
30 cd00287 ribokinase_pfkB_like r 57.2 48 0.001 26.4 6.7 18 32-49 40-57 (196)
31 PF02641 DUF190: Uncharacteriz 55.2 23 0.00051 26.7 4.3 57 133-189 16-74 (101)
32 PRK10853 putative reductase; P 51.0 14 0.00031 28.8 2.6 55 66-120 5-61 (118)
33 TIGR00676 fadh2 5,10-methylene 49.6 29 0.00063 30.7 4.6 71 77-160 20-96 (272)
34 TIGR01082 murC UDP-N-acetylmur 45.3 1.4E+02 0.003 28.0 8.7 118 33-159 14-134 (448)
35 TIGR01616 nitro_assoc nitrogen 43.1 19 0.00042 28.5 2.2 56 66-121 6-63 (126)
36 cd03035 ArsC_Yffb Arsenate Red 42.4 20 0.00043 27.3 2.1 55 67-121 5-61 (105)
37 COG0773 MurC UDP-N-acetylmuram 41.9 3.4E+02 0.0074 26.4 10.9 125 14-159 12-142 (459)
38 TIGR00677 fadh2_euk methylenet 41.3 51 0.0011 29.5 4.9 70 78-160 22-97 (281)
39 PF03960 ArsC: ArsC family; I 41.0 20 0.00044 27.1 2.0 90 67-159 2-95 (110)
40 PRK12724 flagellar biosynthesi 38.3 3.4E+02 0.0074 26.2 10.1 135 14-158 225-368 (432)
41 PF06324 Pigment_DH: Pigment-d 37.9 3.4 7.4E-05 22.2 -1.9 17 203-219 1-17 (18)
42 TIGR01617 arsC_related transcr 37.5 32 0.00069 26.3 2.6 55 67-121 5-63 (117)
43 cd03033 ArsC_15kD Arsenate Red 36.3 29 0.00062 26.9 2.2 56 67-122 6-63 (113)
44 cd04724 Tryptophan_synthase_al 35.8 1.8E+02 0.0038 25.3 7.3 90 66-157 8-110 (242)
45 cd03032 ArsC_Spx Arsenate Redu 35.8 49 0.0011 25.2 3.4 90 66-159 5-98 (115)
46 PRK09432 metF 5,10-methylenete 35.6 77 0.0017 28.6 5.1 46 102-160 75-120 (296)
47 PRK12928 lipoyl synthase; Prov 35.0 1.3E+02 0.0029 27.0 6.6 107 36-153 157-274 (290)
48 cd00537 MTHFR Methylenetetrahy 33.2 1.2E+02 0.0025 26.6 5.8 73 75-160 18-96 (274)
49 PRK12350 citrate synthase 2; P 33.0 56 0.0012 30.5 3.9 78 27-109 169-263 (353)
50 cd04731 HisF The cyclase subun 32.9 1.5E+02 0.0032 25.3 6.3 77 32-108 152-240 (243)
51 PRK13957 indole-3-glycerol-pho 32.8 1.6E+02 0.0035 26.1 6.6 121 69-189 58-190 (247)
52 cd00443 ADA_AMPD Adenosine/AMP 32.8 1.3E+02 0.0028 26.9 6.1 105 15-123 139-259 (305)
53 PF04816 DUF633: Family of unk 32.6 1.6E+02 0.0035 25.1 6.4 80 129-209 24-121 (205)
54 PRK11889 flhF flagellar biosyn 32.6 4.2E+02 0.009 25.7 9.6 159 13-186 242-420 (436)
55 PHA00649 hypothetical protein 32.5 59 0.0013 23.7 3.1 36 59-109 19-54 (83)
56 TIGR01356 aroA 3-phosphoshikim 31.8 82 0.0018 28.9 4.8 120 14-152 204-340 (409)
57 COG0766 MurA UDP-N-acetylgluco 31.6 86 0.0019 30.1 4.8 132 21-172 85-222 (421)
58 KOG3220 Similar to bacterial d 31.4 66 0.0014 28.2 3.8 37 47-85 6-42 (225)
59 PF00448 SRP54: SRP54-type pro 31.1 2.1E+02 0.0046 24.0 6.8 150 14-180 3-177 (196)
60 cd03036 ArsC_like Arsenate Red 30.8 38 0.00081 25.8 2.0 53 67-119 5-61 (111)
61 PRK14033 citrate synthase; Pro 30.4 69 0.0015 30.0 4.1 19 27-45 191-209 (375)
62 PF13344 Hydrolase_6: Haloacid 29.7 62 0.0014 24.1 3.0 63 47-109 10-79 (101)
63 PRK01184 hypothetical protein; 29.5 2.3E+02 0.0051 22.6 6.7 19 127-145 82-100 (184)
64 KOG1533 Predicted GTPase [Gene 29.5 1.8E+02 0.0039 26.3 6.2 65 17-83 7-83 (290)
65 cd01555 UdpNAET UDP-N-acetylgl 29.1 39 0.00085 30.8 2.2 96 41-152 96-195 (400)
66 PRK00162 glpE thiosulfate sulf 29.0 1.6E+02 0.0034 21.6 5.1 84 71-159 6-91 (108)
67 TIGR00014 arsC arsenate reduct 28.9 75 0.0016 24.3 3.4 54 66-119 4-62 (114)
68 cd04723 HisA_HisF Phosphoribos 28.3 3.6E+02 0.0078 23.1 8.0 78 71-151 34-125 (233)
69 COG0493 GltD NADPH-dependent g 28.3 5.5E+02 0.012 24.7 10.1 132 14-157 125-292 (457)
70 cd03008 TryX_like_RdCVF Trypar 27.9 34 0.00074 27.7 1.4 34 63-96 66-99 (146)
71 PRK13586 1-(5-phosphoribosyl)- 27.9 3.1E+02 0.0066 23.8 7.5 80 72-153 30-123 (232)
72 PF04371 PAD_porph: Porphyromo 27.9 2.4E+02 0.0052 25.8 7.1 44 109-159 146-190 (329)
73 TIGR00510 lipA lipoate synthas 27.8 3.4E+02 0.0073 24.6 8.0 60 91-153 218-277 (302)
74 COG0654 UbiH 2-polyprenyl-6-me 27.4 1.1E+02 0.0024 27.9 4.8 40 29-68 12-60 (387)
75 PLN02645 phosphoglycolate phos 27.2 1.2E+02 0.0026 27.1 5.0 72 14-85 32-108 (311)
76 PRK02308 uvsE putative UV dama 27.1 54 0.0012 29.8 2.7 84 73-158 49-153 (303)
77 TIGR02990 ectoine_eutA ectoine 26.7 1.1E+02 0.0023 26.9 4.4 59 30-88 59-122 (239)
78 cd06108 Ec2MCS_like Escherichi 26.6 92 0.002 29.1 4.2 19 27-45 179-197 (363)
79 PLN02540 methylenetetrahydrofo 26.2 1.3E+02 0.0029 30.0 5.3 71 77-160 20-96 (565)
80 PRK13585 1-(5-phosphoribosyl)- 26.1 2.7E+02 0.0058 23.6 6.8 82 72-154 32-127 (241)
81 PF03721 UDPG_MGDP_dh_N: UDP-g 26.1 74 0.0016 26.5 3.2 126 15-159 3-150 (185)
82 COG2875 CobM Precorrin-4 methy 26.1 1E+02 0.0022 27.5 4.1 43 27-71 60-107 (254)
83 PF00538 Linker_histone: linke 26.0 57 0.0012 23.2 2.1 19 134-152 1-19 (77)
84 COG0647 NagD Predicted sugar p 26.0 4.2E+02 0.0092 23.7 8.1 127 14-151 12-147 (269)
85 TIGR01081 mpl UDP-N-acetylmura 25.4 3E+02 0.0066 25.7 7.5 120 32-159 13-137 (448)
86 KOG3040 Predicted sugar phosph 25.2 2.3E+02 0.0049 25.2 6.0 73 13-86 10-88 (262)
87 TIGR01459 HAD-SF-IIA-hyp4 HAD- 25.1 1.8E+02 0.004 24.6 5.5 56 14-70 12-67 (242)
88 cd01991 Asn_Synthase_B_C The C 25.0 4.2E+02 0.0092 22.4 9.3 24 141-166 107-130 (269)
89 cd06115 AthCS_per_like Arabido 24.7 1E+02 0.0022 29.4 4.1 19 27-45 220-238 (410)
90 PRK00421 murC UDP-N-acetylmura 24.5 4.8E+02 0.011 24.4 8.7 130 15-159 10-142 (461)
91 PF02374 ArsA_ATPase: Anion-tr 24.4 59 0.0013 29.4 2.4 46 15-65 4-49 (305)
92 cd04732 HisA HisA. Phosphorib 24.4 2.9E+02 0.0063 23.1 6.6 81 71-153 28-123 (234)
93 PF07521 RMMBL: RNA-metabolisi 24.4 55 0.0012 20.8 1.6 31 130-160 11-41 (43)
94 TIGR01460 HAD-SF-IIA Haloacid 24.2 1.9E+02 0.0042 24.6 5.5 70 14-83 2-77 (236)
95 COG0128 AroA 5-enolpyruvylshik 24.1 2.2E+02 0.0048 27.4 6.3 133 5-152 62-213 (428)
96 PLN02446 (5-phosphoribosyl)-5- 24.1 3E+02 0.0065 24.7 6.8 81 72-157 43-139 (262)
97 PF13627 LPAM_2: Prokaryotic l 24.1 59 0.0013 18.7 1.5 14 31-44 5-18 (24)
98 KOG1116 Sphingosine kinase, in 23.9 1.3E+02 0.0028 30.1 4.8 51 112-162 198-248 (579)
99 PRK11861 bifunctional prephena 23.9 1.1E+02 0.0025 30.6 4.5 112 29-152 483-604 (673)
100 TIGR01452 PGP_euk phosphoglyco 23.8 1.5E+02 0.0032 26.0 4.8 70 14-83 6-80 (279)
101 COG2518 Pcm Protein-L-isoaspar 23.4 1.9E+02 0.0041 25.1 5.2 58 107-170 78-138 (209)
102 PRK08850 2-octaprenyl-6-methox 23.3 1.1E+02 0.0025 27.8 4.1 46 17-69 9-67 (405)
103 PRK07178 pyruvate carboxylase 22.9 1.6E+02 0.0034 28.1 5.1 71 15-88 74-154 (472)
104 cd06111 DsCS_like Cold-active 22.8 1.2E+02 0.0025 28.4 4.1 19 27-45 181-199 (362)
105 KOG4201 Anthranilate synthase 22.7 2.8E+02 0.0061 24.8 6.1 114 70-187 89-223 (289)
106 PRK00994 F420-dependent methyl 22.2 1.1E+02 0.0023 27.6 3.5 51 42-92 62-116 (277)
107 cd02035 ArsA ArsA ATPase funct 22.2 56 0.0012 27.5 1.7 33 17-51 4-36 (217)
108 PRK08013 oxidoreductase; Provi 22.0 1.5E+02 0.0033 27.0 4.7 47 16-69 7-67 (400)
109 PRK05614 gltA type II citrate 22.0 99 0.0021 29.5 3.5 31 14-45 221-251 (419)
110 PF07131 DUF1382: Protein of u 21.9 75 0.0016 22.3 2.0 21 76-96 14-34 (61)
111 PF04343 DUF488: Protein of un 21.8 75 0.0016 24.4 2.3 27 73-99 32-58 (122)
112 COG0766 MurA UDP-N-acetylgluco 21.5 70 0.0015 30.6 2.4 105 31-152 27-137 (421)
113 cd06112 citrate_synt_like_1_1 21.5 2.2E+02 0.0048 26.6 5.7 78 27-109 185-279 (373)
114 PF07471 Phage_Nu1: Phage DNA 21.4 41 0.00088 28.0 0.7 41 27-67 11-51 (164)
115 cd06110 BSuCS-II_like Bacillus 21.4 1.4E+02 0.003 27.7 4.3 19 27-45 181-199 (356)
116 cd01423 MGS_CPS_I_III Methylgl 21.4 2.3E+02 0.005 21.3 4.9 51 33-91 17-77 (116)
117 PRK08849 2-octaprenyl-3-methyl 21.3 1.9E+02 0.004 26.3 5.1 48 15-69 6-67 (384)
118 PRK10026 arsenate reductase; P 21.1 94 0.002 25.2 2.7 56 66-121 7-66 (141)
119 cd00923 Cyt_c_Oxidase_Va Cytoc 21.1 1.4E+02 0.0031 23.2 3.5 41 73-113 57-98 (103)
120 PRK06110 hypothetical protein; 20.9 6.1E+02 0.013 22.7 10.2 121 29-164 80-209 (322)
121 PF00690 Cation_ATPase_N: Cati 20.8 1.3E+02 0.0029 20.5 3.1 42 57-98 4-47 (69)
122 PRK08244 hypothetical protein; 20.8 1.8E+02 0.0038 27.5 5.0 45 17-68 7-59 (493)
123 PRK08654 pyruvate carboxylase 20.8 2E+02 0.0043 27.8 5.4 56 34-89 91-156 (499)
124 TIGR00044 pyridoxal phosphate 20.7 2.9E+02 0.0063 23.6 5.9 82 74-158 40-126 (229)
125 PRK01655 spxA transcriptional 20.4 91 0.002 24.5 2.5 56 67-122 6-65 (131)
126 TIGR01431 adm_rel adenosine de 20.3 3.5E+02 0.0076 26.2 6.9 13 41-53 319-331 (479)
127 cd01320 ADA Adenosine deaminas 20.1 4E+02 0.0087 23.5 6.9 58 34-92 178-241 (325)
No 1
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=8.5e-65 Score=460.42 Aligned_cols=195 Identities=53% Similarity=0.856 Sum_probs=186.4
Q ss_pred CccccccccCCC-CceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHH
Q 027739 1 MIKYATKVEGLG-DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR 79 (219)
Q Consensus 1 ~~~~~~~~~~~~-~~~Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLeaLGi~~~~~~~~a~~ 79 (219)
|++++.+++.+. ..+|+|||||||++||||||++|||+|++|+||+|||||++|||+||+|+||+|||+++.+++++++
T Consensus 63 m~~~~~~~~~p~~~~vDi~GTGGDg~~T~NiSt~aA~v~A~~Gv~VaKHGnrs~sSksGsaDvleaLGv~l~~~~e~~~~ 142 (338)
T COG0547 63 MREHAPKLPVPAADPVDIVGTGGDGANTINISTAAAIVAAAAGVPVAKHGNRSVSSKSGSADVLEALGVNLELSPEQAAR 142 (338)
T ss_pred HHHhcccCCCCCCCCCCeecCCCCCCCcccchHHHHHHHHhCCCcEEeECCCCCCCCCcHHHHHHHcCCCCCCCHHHHHH
Confidence 677777777654 3389999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCeeeeecccccHHhhhhHHHHhhcCCCchhHhHhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCCCeEEEEEe
Q 027739 80 CVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS 159 (219)
Q Consensus 80 ~L~~~gi~fl~a~~~~P~l~~l~~lR~~Lg~RT~fNtl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lG~~~alvv~G 159 (219)
+|++.||+|||+|.|||+|+++.++|++||+||+||++|||+||+++++||+|||||+|.++++++++.+|.+|++||||
T Consensus 143 ~l~~~g~~FlfAp~~hp~~k~v~~vR~~LG~RTifN~LGPL~NPa~~~~qliGV~~p~~~~~~A~~l~~LG~~ralvV~G 222 (338)
T COG0547 143 ALEETGIGFLFAPAYHPAMKHVAPVRKELGVRTIFNLLGPLLNPARAKLQLIGVYHPELVELLAEALRLLGVERALVVHG 222 (338)
T ss_pred HHHhcCeEEEEccccCHHHHHHHHHHHHcCCCchHHhhccccCCCCCCceEEEEeCHHHHHHHHHHHHHhCcceEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCccccCCCCceEEEEEeCCcEEEEEeccCcchhhhH
Q 027739 160 -EGLDEMSPLGPGLILDVTQEKIERFSFDPCKDLVTDL 196 (219)
Q Consensus 160 -eG~dEls~~~~t~i~~v~~g~i~~~~l~P~d~~~~~~ 196 (219)
||+||++|+++|.|+++++|++++|+++|+ +||.+.
T Consensus 223 ~~GlDE~~~~~~t~v~~l~~g~i~~~~l~pe-~~Gl~~ 259 (338)
T COG0547 223 LEGLDEVTPTGTTLVAELKDGEIREYTLTPE-DFGLER 259 (338)
T ss_pred CCCcccccCCCCceEEEEcCCceEEEEeCHH-hcCCCC
Confidence 899999999999999999999999999996 676554
No 2
>PLN02641 anthranilate phosphoribosyltransferase
Probab=100.00 E-value=4.3e-61 Score=438.12 Aligned_cols=192 Identities=84% Similarity=1.238 Sum_probs=184.4
Q ss_pred CccccccccCCCCceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHHH
Q 027739 1 MIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRC 80 (219)
Q Consensus 1 ~~~~~~~~~~~~~~~Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLeaLGi~~~~~~~~a~~~ 80 (219)
|++++.+++..++.+|+|||||||++|||+||++|+++|++|+||+|||||++||++||+|+||+|||+++.++++++++
T Consensus 62 ~~~~~~~~~~~~~~~D~~gtGGdg~~t~nist~aa~v~A~~G~~V~kHGnr~~ss~~GsaDvLeaLGi~~~~~~~~~~~~ 141 (343)
T PLN02641 62 MIKRARKVDGLVDAVDIVGTGGDGANTVNISTGSSILAAACGAKVAKQGNRSSSSACGSADVLEALGVAIDLGPEGVKRC 141 (343)
T ss_pred HHHhCCCCCCCCCCCceeCCCCCCCCccccHHHHHHHHHhCCCeEEEeCCCCCCCccCHHHHHHHcCCCCCCCHHHHHHH
Confidence 56777777654568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCeeeeecccccHHhhhhHHHHhhcCCCchhHhHhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCCCeEEEEEeC
Q 027739 81 VDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSE 160 (219)
Q Consensus 81 L~~~gi~fl~a~~~~P~l~~l~~lR~~Lg~RT~fNtl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lG~~~alvv~Ge 160 (219)
|++.||+|+++|.|||+|+++.++|++||+||+||++|||+||+++++||+|||||+|.++|+++++.+|.++++||||+
T Consensus 142 l~~~g~~fl~a~~~hPa~~~~~~~R~~LG~RT~fN~lgpL~NPa~~~~~v~GV~~~~~~~~~a~al~~lG~~~alVv~G~ 221 (343)
T PLN02641 142 VEEVGIGFMMAPKYHPAMKIVAPVRKKLKVKTVFNILGPMLNPARVPHAVVGVYHESLVEKMAKALQRFGMKRALVVHSE 221 (343)
T ss_pred HHhcCcEEEechhhCHHHHHHHHHHHHhCCCcHHHHHHHhcCCCCCCceEEeeeCHHHHHHHHHHHHHcCCCeEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCceEEEEEeCCcEEEEEeccCcchh
Q 027739 161 GLDEMSPLGPGLILDVTQEKIERFSFDPCKDLV 193 (219)
Q Consensus 161 G~dEls~~~~t~i~~v~~g~i~~~~l~P~d~~~ 193 (219)
|+||++|.++|++|++++|++++++|+|+ +||
T Consensus 222 G~DEis~~g~t~v~~~~~g~i~~~~~~p~-d~G 253 (343)
T PLN02641 222 GLDEMSPLGPGDVLEVTPEKIEEFSFDPL-DFG 253 (343)
T ss_pred CCCccccCcceEEEEEeCCceEEEEeCHH-HcC
Confidence 99999999999999999999999999997 443
No 3
>PRK07394 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-60 Score=434.94 Aligned_cols=192 Identities=19% Similarity=0.250 Sum_probs=182.1
Q ss_pred CccccccccCCC--CceeEeccCCCCC-CCCcchHHHHHHHHcCCCcEEeeCCCCCCCccc--HHHHHHHcCCCCCC-CH
Q 027739 1 MIKYATKVEGLG--DAVDIVGTGGDGA-NTVNISTGASILAAACGAKVAKQGSRSSSSACG--SADVLEALGVVIDL-DP 74 (219)
Q Consensus 1 ~~~~~~~~~~~~--~~~Di~GtggDg~-~t~NiSt~aA~vlAa~Gv~V~kHG~~~~ssk~G--s~dvLeaLGi~~~~-~~ 74 (219)
|++++.+++.+. ..+|+|||||||+ +||||||++|+++|++|+||+|||||++|||+| |+|+||+|||+++. ++
T Consensus 68 ~~~~~~~~~~~~~~~~~d~~GtggDG~~~t~NiSt~aA~v~A~~Gv~V~kHGnr~~ssk~GvtsaDvLe~LGv~~~~~~~ 147 (342)
T PRK07394 68 YDELGPKLQSPSNQRPPIVFGMPYDGRSRTAPIYPLTALILAAAGQPVVLHGGDRMPTKYGVPLVELWQGLGVDLTGLSL 147 (342)
T ss_pred HHHhCCCCCCCCCCCceeEEeCCCCCCCCCcccHHHHHHHHHHCCCeEEEECCCCCCCCCCchHHHHHHHCCCCCCCCCH
Confidence 567777775432 4789999999997 799999999999999999999999999999999 99999999999998 99
Q ss_pred HHHHHHHHHcCeeeeecccccHHhhhhHHHHhhcCCCchhHhHhhccCC-CCCCeEEEeecChhhHHHHHHHHHHcCCCe
Q 027739 75 EGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP-ACVPFAVVGVYNENLVLKMANALQRFGLKR 153 (219)
Q Consensus 75 ~~a~~~L~~~gi~fl~a~~~~P~l~~l~~lR~~Lg~RT~fNtl~pLlNP-~~~~~~v~Gv~h~~~~~~~a~~l~~lG~~~ 153 (219)
+++.++|++.||+|+++|.|||+|+++.++|++||+||+||++|||+|| +++++||+|||||+|.++|+++++.+|.++
T Consensus 148 ~~~~~~l~~~g~~Fl~ap~~hP~m~~~~~vR~~Lg~RT~fN~lgpL~NP~a~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~ 227 (342)
T PRK07394 148 EQVQEGFEQTGLAFIYQPDHFPLAESLIPYRDEIGKRPPLATLELIWTPHQGDHHLVSGFVHPPTEARAWEALELRGETN 227 (342)
T ss_pred HHHHHHHHHcCceeeechhhCHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCCCCceEEEeeCHHHHHHHHHHHHHcCCCe
Confidence 9999999999999999999999999999999999999999999999999 688999999999999999999999999999
Q ss_pred EEEEEe-CCccccCCCCceEEEEEeCCcEEEEEeccCcchh
Q 027739 154 ALVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPCKDLV 193 (219)
Q Consensus 154 alvv~G-eG~dEls~~~~t~i~~v~~g~i~~~~l~P~d~~~ 193 (219)
++|||| ||+||++++++|.++++++|++++++|+|+| ||
T Consensus 228 ~~vv~G~~G~dE~s~~~~t~v~~~~~g~i~~~~i~p~d-~G 267 (342)
T PRK07394 228 FTTVKGLEGSCDLPISRTAIIGRVQNGHFERLILHPRD-YG 267 (342)
T ss_pred EEEEEcCCCceeccCCCCeEEEEEcCCeEEEEEECHHH-cC
Confidence 999999 9999999999999999999999999999974 54
No 4
>PRK08136 glycosyl transferase family protein; Provisional
Probab=100.00 E-value=1.6e-58 Score=417.37 Aligned_cols=187 Identities=18% Similarity=0.198 Sum_probs=177.6
Q ss_pred CccccccccCCC---CceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHH
Q 027739 1 MIKYATKVEGLG---DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGV 77 (219)
Q Consensus 1 ~~~~~~~~~~~~---~~~Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLeaLGi~~~~~~~~a 77 (219)
|++++.+++.++ ..+|+||||||++ ||||||++|+|+|++|+||+|||||++|+|+||+|+||+|||+++.+++++
T Consensus 66 ~~~~~~~~~~~~~~~~~iD~~gtgGd~~-t~nist~aA~vlA~~G~~V~kHGnr~vssk~gsadvleaLGi~~~~~~~~~ 144 (317)
T PRK08136 66 MQAHTIPLTPPAGRPMPVVIPSYNGARK-QANLTPLLALLLAREGVPVLVHGVSEDPTRVTSAEIFEALGIPPTLHADQA 144 (317)
T ss_pred HHHhCCcCCCCCCCCceEEeCCCCCCCC-CcChHHHHHHHHHHCCCeEEEECCCCCCCcccHHHHHHHcCCCCCCCHHHH
Confidence 467777775432 2699999999965 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCeeeeecccccHHhhhhHHHHhhcCCCchhHhHhhccCC--CCCCeEEEeecChhhHHHHHHHHHHcCCCeEE
Q 027739 78 RRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP--ACVPFAVVGVYNENLVLKMANALQRFGLKRAL 155 (219)
Q Consensus 78 ~~~L~~~gi~fl~a~~~~P~l~~l~~lR~~Lg~RT~fNtl~pLlNP--~~~~~~v~Gv~h~~~~~~~a~~l~~lG~~~al 155 (219)
++.|++.||+|+++|.|||+|+++.++|++||+||+||++|||+|| +++++||+|||||+|.++|+++++++|. +++
T Consensus 145 ~~~l~~~g~~fl~ap~~hPa~~~~~~vR~~LG~RT~fN~lgpL~NP~~a~~~~~v~Gv~~~~~~~~~a~~l~~lg~-~al 223 (317)
T PRK08136 145 QAKLAEGQPAFIPVGVLCPPLARLLALRWRMGVRNSAHTLAKLATPFAEGAALRLSSYTHPEYRDRLAEFFSDIGA-RAL 223 (317)
T ss_pred HHHHHhcCeEEEEhHHhCHHHHHHHHHHHHhCCCCHHHHHHHhcCccccCCCeEEEeeeChHHHHHHHHHHHHcCC-CEE
Confidence 9999999999999999999999999999999999999999999999 6899999999999999999999999998 999
Q ss_pred EEEe-CCccccCCCCceEEEEEeCCcEEEEEeccCc
Q 027739 156 VVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPCK 190 (219)
Q Consensus 156 vv~G-eG~dEls~~~~t~i~~v~~g~i~~~~l~P~d 190 (219)
|||| ||+||+|++++|+++++++|+++ +.++|+|
T Consensus 224 vv~G~~G~dE~s~~~~t~v~~~~~g~~~-~~~~p~~ 258 (317)
T PRK08136 224 LMRGTEGEVYANPRRCPQIDWIHDGGCR-VLVERQS 258 (317)
T ss_pred EEEcCCCceeecCCCCceEEEEeCCEEE-EEECHHH
Confidence 9999 99999999999999999999998 9999976
No 5
>PF00591 Glycos_transf_3: Glycosyl transferase family, a/b domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR000312 The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1V8G_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 3H5Q_A 1KHD_A 1KGZ_B 1AZY_A 1OTP_A ....
Probab=100.00 E-value=2.8e-59 Score=408.73 Aligned_cols=178 Identities=50% Similarity=0.828 Sum_probs=168.8
Q ss_pred CceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHHHHHHcCeeeeecc
Q 027739 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMST 92 (219)
Q Consensus 13 ~~~Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLeaLGi~~~~~~~~a~~~L~~~gi~fl~a~ 92 (219)
+++|+|||||||.+|||+||++|+++|++|+||+|||||++++|+|++|+||+|||+++.++++++++|++.||+|+++|
T Consensus 2 ~~~D~~gTGGd~~~t~niSt~~a~vlAa~G~~V~kHG~r~~~~~~Gs~dvLe~LGv~~~~~~~~~~~~l~~~g~~fl~~~ 81 (252)
T PF00591_consen 2 PVVDICGTGGDGDKTFNISTAAAIVLAAAGVPVAKHGNRGVTSKSGSADVLEALGVPIDLSPEEAQAQLEETGIAFLFAP 81 (252)
T ss_dssp TEEEEEESSCSSSTBHHHHHHHHHHHHHTTSEEEEEEESGCTTSSSHHHHHHHSTB-TT--HHHHHHHHHHHSEEEEEHH
T ss_pred CceEEecCCCCCCCceehHHHHHHHHHccCCcEecccCCCccccccHHHHHHhcCCCcCCCHHHHHHHhhccCeEEecch
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHhhhhHHHHhhcCCCchhHhHhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCCCeEEEEEeCCccccCCCCceE
Q 027739 93 KYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGL 172 (219)
Q Consensus 93 ~~~P~l~~l~~lR~~Lg~RT~fNtl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lG~~~alvv~GeG~dEls~~~~t~ 172 (219)
.|||+|+++.++|++||+||+||+++||+||++++++++|||||+|.++|+++++.+|++++++|||||+||+++.++|.
T Consensus 82 ~~~p~~~~l~~~R~~lg~rT~~N~l~pL~nP~~~~~~v~Gv~~~~~~~~~~~~~~~lg~~~~~vv~G~G~dE~~~~~~t~ 161 (252)
T PF00591_consen 82 NFHPALKRLAPVRRELGIRTVFNTLGPLLNPANAKHQVIGVFHPEYAELMAEALRDLGYGRALVVKGEGSDEISPLGPTR 161 (252)
T ss_dssp HHSGGHHHHHHHHHHHTS--SHHHHGHHHHTT--SEEEEEHSCHHHHHHHHHHHCCETESEEEEEEETTBSSHHHSSHEE
T ss_pred hcCcchHHHHHHHHHcCCCCHHHhhhhhcCCcCCCcEEEEEeCHHHHHHHHHHHHhCCCceEEEEecCCcchhhhccCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcEEEEEeccCc
Q 027739 173 ILDVTQEKIERFSFDPCK 190 (219)
Q Consensus 173 i~~v~~g~i~~~~l~P~d 190 (219)
++++++|++++++|+|+|
T Consensus 162 v~~~~~g~~~~~~l~p~d 179 (252)
T PF00591_consen 162 VYELKNGEITEYELDPED 179 (252)
T ss_dssp EEEHHTTEEEEEEEEEGC
T ss_pred EEeecCCceeEEecCHhh
Confidence 999999999999999975
No 6
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=2.6e-58 Score=440.22 Aligned_cols=189 Identities=43% Similarity=0.769 Sum_probs=182.5
Q ss_pred CccccccccCC-CCceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHH
Q 027739 1 MIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR 79 (219)
Q Consensus 1 ~~~~~~~~~~~-~~~~Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLeaLGi~~~~~~~~a~~ 79 (219)
|++++.+++.. ...+|+|||||||++|||+||++|+++|++|+||+|||||++|+|+||+|+||+|||+++.+++++++
T Consensus 259 ~~~~~~~~~~~~~~~iD~~gtGgdg~~t~nist~aa~v~A~~Gv~V~kHG~r~~ss~~GsadvlealGi~~~~~~~~~~~ 338 (531)
T PRK09522 259 LLENAAPFPRPDYLFADIVGTGGDGSNSINISTASAFVAAACGLKVAKHGNRSVSSKSGSSDLLAAFGINLDMNADKSRQ 338 (531)
T ss_pred HHHhCCCCCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhCCCcEEEeCCCCCCCCccHHHHHHHcCCCCCCCHHHHHH
Confidence 56777777543 34799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCeeeeecccccHHhhhhHHHHhhcCCCchhHhHhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCCCeEEEEEe
Q 027739 80 CVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS 159 (219)
Q Consensus 80 ~L~~~gi~fl~a~~~~P~l~~l~~lR~~Lg~RT~fNtl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lG~~~alvv~G 159 (219)
+|++.||+|+++|.|||+|+++.++|++||+||+||++|||+||+++++||+|||||+|.++++++++++|.++++||||
T Consensus 339 ~l~~~g~~fl~ap~~hpam~~~~~~R~~Lg~rT~fN~lgpL~NPa~~~~~v~Gv~~~~~~~~~a~~l~~lG~~~~~vv~G 418 (531)
T PRK09522 339 ALDELGVCFLFAPKYHTGFRHAMPVRQQLKTRTLFNVLGPLINPAHPPLALIGVYSPELVLPIAETLRVLGYQRAAVVHS 418 (531)
T ss_pred HHHHhCcEEEEhhHhCHHHHHHHHHHHHhCCCcHHHHHHHhcCCCCCCcEEEEeeCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCceEEEEEeCCcEEEEEeccC
Q 027739 160 EGLDEMSPLGPGLILDVTQEKIERFSFDPC 189 (219)
Q Consensus 160 eG~dEls~~~~t~i~~v~~g~i~~~~l~P~ 189 (219)
+|+||+|++++|+++++++|++++++|+|+
T Consensus 419 ~G~DEis~~~~t~v~~~~~g~i~~~~~~P~ 448 (531)
T PRK09522 419 GGMDEVSLHAPTIVAELHDGEIKSYQLTAE 448 (531)
T ss_pred CCccccCCCCceEEEEEcCCeEEEEEECHH
Confidence 999999999999999999999999999997
No 7
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=100.00 E-value=1.3e-57 Score=413.19 Aligned_cols=190 Identities=57% Similarity=0.908 Sum_probs=182.0
Q ss_pred CccccccccC--CCCceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHH
Q 027739 1 MIKYATKVEG--LGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVR 78 (219)
Q Consensus 1 ~~~~~~~~~~--~~~~~Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLeaLGi~~~~~~~~a~ 78 (219)
|++++.+++. ..+.+|+|||||||++|||+||++|+++|++|+||+|||+|++++++|++|+||+|||+++.++++++
T Consensus 56 ~~~~~~~~~~~~~~~~iD~~gtggdg~~t~nist~~a~vlA~~G~~V~kHG~r~~~s~~Gs~d~le~LGi~~~~s~~~~~ 135 (330)
T TIGR01245 56 MREHAVKVPGRPVEDLVDIVGTGGDGANTINISTASAFVAAAAGVKVAKHGNRSVSSKSGSADVLEALGVNLDLGPEKVA 135 (330)
T ss_pred HHHhCCCCCCccCCCcccccCCCCCCCCccccHHHHHHHHHhCCCEEEEeCCCCCCCCccHHHHHHHcCCCCCCCHHHHH
Confidence 4566666653 23579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCeeeeecccccHHhhhhHHHHhhcCCCchhHhHhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCCCeEEEEE
Q 027739 79 RCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH 158 (219)
Q Consensus 79 ~~L~~~gi~fl~a~~~~P~l~~l~~lR~~Lg~RT~fNtl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lG~~~alvv~ 158 (219)
++|++.||+|+++|.|||+|+++.++|++||+||+||++|||+||++++++|+|||||+|.++|+++++.+|.++++|||
T Consensus 136 ~~l~~~g~~f~~~~~~~P~~~~l~~lR~~lg~rT~~N~lgpL~NP~~~~~~v~Gv~~~~~~~~~a~~~~~lg~~~~~vv~ 215 (330)
T TIGR01245 136 RSLEETGIGFLFAPLYHPAMKHVAPVRRELGVRTVFNLLGPLTNPARPKYQVIGVYDPDLVEVMAEALKNLGVKRALVVH 215 (330)
T ss_pred HHHHHhCcEEeechhhCHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCCCCEEEcccCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred e-CCccccCCCCceEEEEEeCCcEEEEEeccCc
Q 027739 159 S-EGLDEMSPLGPGLILDVTQEKIERFSFDPCK 190 (219)
Q Consensus 159 G-eG~dEls~~~~t~i~~v~~g~i~~~~l~P~d 190 (219)
| ||+||++|+++|++|++++|++.+++|+|+|
T Consensus 216 G~~G~dE~s~~~~t~v~~~~~g~~~~~~i~p~~ 248 (330)
T TIGR01245 216 GDDGLDEISLTGPTTVAELKDGEIREYTLDPED 248 (330)
T ss_pred CCCCceeecCCCcEEEEEEECCEEEEEeCCHHH
Confidence 9 9999999999999999999999999999973
No 8
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=2.5e-57 Score=412.66 Aligned_cols=189 Identities=56% Similarity=0.879 Sum_probs=181.9
Q ss_pred CccccccccCCCCceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHHH
Q 027739 1 MIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRC 80 (219)
Q Consensus 1 ~~~~~~~~~~~~~~~Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLeaLGi~~~~~~~~a~~~ 80 (219)
|++++.+++.+++.+|+|||||||++|||+||++|+++|++|+||+|||++++++|+|++|+||+|||+++.+++++++.
T Consensus 62 ~~~~~~~~~~~~~~iDi~gtggdg~~t~nis~~~a~vlA~~G~~V~kHG~~~~~s~~GsadvLe~lGi~~~~~~~~~~~~ 141 (339)
T PRK00188 62 MREHAVPVPDPDDAVDIVGTGGDGANTFNISTAAAFVAAAAGVKVAKHGNRSVSSKSGSADVLEALGVNLDLSPEQVARC 141 (339)
T ss_pred HHHhCCcCCCCCCCCcccCCCCCCCCccchHHHHHHHHHhCCCEEEEECCCCCCCCcCHHHHHHHcCCCCCCCHHHHHHH
Confidence 45677666554458999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCeeeeecccccHHhhhhHHHHhhcCCCchhHhHhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCCCeEEEEEe-
Q 027739 81 VDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS- 159 (219)
Q Consensus 81 L~~~gi~fl~a~~~~P~l~~l~~lR~~Lg~RT~fNtl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lG~~~alvv~G- 159 (219)
|+++||+|+++|.|||+|+++.++|++||+||+||++|||+||++++++|+|||||+|.++|+++++.+|.++++||||
T Consensus 142 l~~~g~~fl~a~~~~P~l~~l~~lR~~Lg~Rt~fN~l~~L~NP~~~~~~v~Gv~h~~~~~~~a~~l~~lg~~~~~vv~G~ 221 (339)
T PRK00188 142 LEEVGIGFLFAPLYHPAMKHVAPVRKELGIRTIFNLLGPLTNPARPKRQLIGVYSPDLLEPMAEVLKRLGSKRALVVHGS 221 (339)
T ss_pred HHHcCcEEeeCcccCHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCCCCEEEeecCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCceEEEEEeCCcEEEEEeccC
Q 027739 160 EGLDEMSPLGPGLILDVTQEKIERFSFDPC 189 (219)
Q Consensus 160 eG~dEls~~~~t~i~~v~~g~i~~~~l~P~ 189 (219)
||+||++|+++|+++++++|+++++.|+|+
T Consensus 222 ~G~dE~~~~~~t~v~~~~~g~~~~~~i~p~ 251 (339)
T PRK00188 222 DGLDEISLTGPTTVAELKDGEIREYTLTPE 251 (339)
T ss_pred CCceeecCCCCEEEEEEcCCEEEEEEECHH
Confidence 999999999999999999999999999997
No 9
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=2.9e-57 Score=433.38 Aligned_cols=192 Identities=44% Similarity=0.748 Sum_probs=184.0
Q ss_pred CccccccccCC-CCceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHH
Q 027739 1 MIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR 79 (219)
Q Consensus 1 ~~~~~~~~~~~-~~~~Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLeaLGi~~~~~~~~a~~ 79 (219)
|++++.+++.+ ++.+|+|||||||++|||+||++|+++|++|+||+|||||++|||+||+|+||+|||+++.+++++++
T Consensus 254 ~~~~~~~~~~~~~~~~D~~gtggdg~~t~nist~~a~v~A~~G~~V~kHG~r~~ss~~Gsadvle~lGv~~~~~~~~~~~ 333 (534)
T PRK14607 254 MREKSRHIPAPSPRTVDTCGTGGDGFGTFNISTTSAFVVAAAGVPVAKHGNRAVSSKSGSADVLEALGVKLEMTPEEAAS 333 (534)
T ss_pred HHHhCCcCCCCCCCceEEccCCCCCCCccccHHHHHHHHHhCCCcEEEECCCCCCCCccHHHHHHHcCCCCCCCHHHHHH
Confidence 56778777653 34799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCeeeeecccccHHhhhhHHHHhhcCCCchhHhHhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCCCeEEEEEe
Q 027739 80 CVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS 159 (219)
Q Consensus 80 ~L~~~gi~fl~a~~~~P~l~~l~~lR~~Lg~RT~fNtl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lG~~~alvv~G 159 (219)
+|++.||+|+++|.|||+|++++++|++||+||+||++|||+||++++++|+|||||+|.++|+++++.+|.++++||||
T Consensus 334 ~l~~~g~~fl~ap~~~p~l~~~~~~R~~Lg~rTifN~lgpL~NP~~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~~~vv~G 413 (534)
T PRK14607 334 VLRETGFSFLFAPLFHPAMKHAAPARRELGIRTAFNLLGPLTNPARVKYQIVGVFDPSYAEPLAQALQRLGTERAMVVSG 413 (534)
T ss_pred HHHHhCcEEeeccccCHHHHHHHHHHHHhCCCcHHHhHHhccCCCCCCcEEEeeCCHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCccccCCCCceEEEEEeCCcEEEEEeccCcchh
Q 027739 160 -EGLDEMSPLGPGLILDVTQEKIERFSFDPCKDLV 193 (219)
Q Consensus 160 -eG~dEls~~~~t~i~~v~~g~i~~~~l~P~d~~~ 193 (219)
||+||+|++++|+++++++|++.+++|+|+ +||
T Consensus 414 ~~G~dE~s~~~~t~v~~~~~g~i~~~~i~p~-~~G 447 (534)
T PRK14607 414 IDGYDEISTCGPTQILELEDGEIVTYTFDPE-ELG 447 (534)
T ss_pred CCCCccccCCCceEEEEEcCCEEEEEEEcHH-HCC
Confidence 999999999999999999999999999996 443
No 10
>PRK09071 hypothetical protein; Validated
Probab=100.00 E-value=1.7e-55 Score=398.57 Aligned_cols=185 Identities=18% Similarity=0.205 Sum_probs=175.2
Q ss_pred CccccccccCCCCceeE-eccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCccc-HHHHHHHcCCCCCCCHHHHH
Q 027739 1 MIKYATKVEGLGDAVDI-VGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACG-SADVLEALGVVIDLDPEGVR 78 (219)
Q Consensus 1 ~~~~~~~~~~~~~~~Di-~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~~ssk~G-s~dvLeaLGi~~~~~~~~a~ 78 (219)
|++++.+++.+ ..+|+ ||||+|+..++| +++|+++|++|+||+||||+++|||+| |+|+||+|||+++.++++++
T Consensus 67 ~r~~~~~~~~~-~~iD~~~gtG~d~~~~~~--~~~a~vlA~~G~~V~kHGnr~~ssk~g~saDvLeaLGv~~~~~~~~~~ 143 (323)
T PRK09071 67 IRERLQAPPLA-VDLDWPSYAGKRRHLPWY--LLAAKLLAQNGYRVLLHGGGGHTAGRLYTEQLLEALGIPIARSWQEAE 143 (323)
T ss_pred HHHhcccCCCC-CceecCCcCCCCCCcccH--HHHHHHHHHCCCeEEEECCCCCCCCcccHHHHHHHCCCCCCCCHHHHH
Confidence 56788777632 35998 999999777776 799999999999999999999999996 99999999999999999999
Q ss_pred HHHHHcCeeeeecccccHHhhhhHHHHhhcCCCchhHhHhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCCCeEEEEE
Q 027739 79 RCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH 158 (219)
Q Consensus 79 ~~L~~~gi~fl~a~~~~P~l~~l~~lR~~Lg~RT~fNtl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lG~~~alvv~ 158 (219)
++|++.||+|+++|.|||+|+++.++|++||+||+||++|||+||+++++||+|||||+|.++|+++++.+|.++++|||
T Consensus 144 ~~l~~~g~~fl~ap~~hPa~~~~~~~R~~lg~RT~fN~lgpL~NPa~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~alvv~ 223 (323)
T PRK09071 144 QALEEHNIAYLPLEDFAPQLQRMIDLRNTLGLRSPINTLARLLNPLNAKASLQGIFHPGYQQLHREAARLLGDQNALVFK 223 (323)
T ss_pred HHHHhcCeEEeehHHhChHHHHHHHHHHHhCCCCHHHHHHHHcCcCCCCceEEeeEChhHHHHHHHHHHHcCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred e-CCccccCCCCceEEEEEeCCcEEEEEecc
Q 027739 159 S-EGLDEMSPLGPGLILDVTQEKIERFSFDP 188 (219)
Q Consensus 159 G-eG~dEls~~~~t~i~~v~~g~i~~~~l~P 188 (219)
| ||+||+||+++|++|++++|++++++|+|
T Consensus 224 G~~G~dE~s~~~~t~v~~~~~g~i~~~~~~~ 254 (323)
T PRK09071 224 GEGGESERNPDVSTTLYGSRNGEAWDEEWPA 254 (323)
T ss_pred CCCCceeecCCCceEEEEEcCCeEEEEEecc
Confidence 9 99999999999999999999999999853
No 11
>KOG1438 consensus Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.8e-51 Score=358.51 Aligned_cols=178 Identities=64% Similarity=1.063 Sum_probs=171.0
Q ss_pred CceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCC-CCCHHHHHHHHHHcCeeeeec
Q 027739 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVI-DLDPEGVRRCVDEAGIGFMMS 91 (219)
Q Consensus 13 ~~~Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLeaLGi~~-~~~~~~a~~~L~~~gi~fl~a 91 (219)
+.+|||||||||+||||+||.+|+|+|.||.+|+||||++.+|.+|++|+|++||+++ +..++.+.+++++.+|.|+++
T Consensus 103 ~~vDIVGTGGDG~NTfNvST~saIvAag~GlkvcKhGnkaStSasGsaDll~~lGCd~l~v~p~~i~~~~e~~~f~Fl~a 182 (373)
T KOG1438|consen 103 DAVDIVGTGGDGANTFNVSTGSAIVAAGCGLKVCKHGNKASTSASGSADLLEALGCDVLDVGPEGIKRCVEEGGFGFLMA 182 (373)
T ss_pred ceeEEeccCCCCcceeeecchHHHHHhcccchhhhcCCccccccCccHHHHHhcCceeeccCCcccccccccCceeEEec
Confidence 5799999999999999999999999999999999999999999999999999999886 689999999999999999999
Q ss_pred ccccHHhhhhHHHHhhcCCCchhHhHhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCCCeEEEEEe-CCccccCCCCc
Q 027739 92 TKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGP 170 (219)
Q Consensus 92 ~~~~P~l~~l~~lR~~Lg~RT~fNtl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lG~~~alvv~G-eG~dEls~~~~ 170 (219)
|.|||+|+.+.++||+||++|+||++|||+||++..++++||||+++.+.|+++++++|..+.++|.| +|.||+||-|+
T Consensus 183 Pm~Hp~mk~V~piRK~LgipTvFNilGPlLnP~~v~~rivGVy~k~L~~~~AKal~~~g~gs~~~V~g~~GLDE~SP~G~ 262 (373)
T KOG1438|consen 183 PMYHPAMKIVGPIRKKLGIPTVFNILGPLLNPARVSYRIVGVYHKDLVVKMAKALQRFGMGSRALVVGSCGLDEMSPLGG 262 (373)
T ss_pred hhhcccccchhHHHHhcCCccHHHhcccccCcchhhhheeeeeHHHHHHHHHHHHHHhCCCceEEEEeccCccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999987778888 99999999999
Q ss_pred eEEEEEeCC--cEEEEEeccCc
Q 027739 171 GLILDVTQE--KIERFSFDPCK 190 (219)
Q Consensus 171 t~i~~v~~g--~i~~~~l~P~d 190 (219)
|.+|.++++ ++++|+++|+|
T Consensus 263 t~vw~v~~se~k~e~f~~~P~~ 284 (373)
T KOG1438|consen 263 TLVWDVTPSEEKIEEFSFDPLD 284 (373)
T ss_pred ceEEEecCCceeeeeeecCHhh
Confidence 999999985 47888888974
No 12
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=100.00 E-value=9.8e-33 Score=257.80 Aligned_cols=145 Identities=27% Similarity=0.355 Sum_probs=135.5
Q ss_pred CccccccccCC---CCceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHc-CCCCCCCHHH
Q 027739 1 MIKYATKVEGL---GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDPEG 76 (219)
Q Consensus 1 ~~~~~~~~~~~---~~~~Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLeaL-Gi~~~~~~~~ 76 (219)
|++++.+++.+ ...+|+|||||||.+|||+ +|+++|+||++|+|||||++++++||+|+||+| |+++++++++
T Consensus 62 M~~sg~~~~~~~~~~~~vD~~gTGGdG~kt~ni---~a~ivAA~Gv~VaKhgnR~lss~~GTaD~LE~lpG~~~~ls~e~ 138 (434)
T PRK06078 62 MVNSGDTIDLSAIEGIKVDKHSTGGVGDTTTLV---LAPLVAAFGVPVAKMSGRGLGHTGGTIDKLESIKGFHVEISQED 138 (434)
T ss_pred HHHhCCcccCcccCCCeeEecCCCCCCCCchHH---HHHHHHcCCCCeeeeCCCCcCCCcchHHHHHhCCCCCCCCCHHH
Confidence 56777777643 2389999999999999994 899999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHcCeeeee-cccccHHhhhhHHHHhhcCCCchhHhHhhccCC--------CCCCeEEEeec--------ChhhH
Q 027739 77 VRRCVDEAGIGFMM-STKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP--------ACVPFAVVGVY--------NENLV 139 (219)
Q Consensus 77 a~~~L~~~gi~fl~-a~~~~P~l~~l~~lR~~Lg~RT~fNtl~pLlNP--------~~~~~~v~Gv~--------h~~~~ 139 (219)
+.+++++.||+|++ +|.|||+++++.++|++++. ||++ ||+|| +++.++|+||+ +++..
T Consensus 139 ~~~~l~~~G~~fl~~a~~~~PAdk~v~~lR~v~~t---~n~l-PLi~~SImSKKlAag~~~~vldV~~G~gAfm~~~~~a 214 (434)
T PRK06078 139 FIKLVNENKVAVIGQSGNLTPADKKLYALRDVTAT---VNSI-PLIASSIMSKKIAAGADAIVLDVKTGAGAFMKTVEDA 214 (434)
T ss_pred HHHHHHHhCcEEEccCCCcChhhhhhHHHhccccc---cChH-HhhhhHhhhhhhhcCCCeEEEeeecCCCCCCCCHHHH
Confidence 99999999999999 59999999999999999994 9999 99999 99999999999 99999
Q ss_pred HHHHHHHHHcCCC
Q 027739 140 LKMANALQRFGLK 152 (219)
Q Consensus 140 ~~~a~~l~~lG~~ 152 (219)
+.+++++..+|.+
T Consensus 215 ~~lA~~l~~lG~~ 227 (434)
T PRK06078 215 EELAHAMVRIGNN 227 (434)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999854
No 13
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=99.96 E-value=1.2e-29 Score=235.57 Aligned_cols=158 Identities=25% Similarity=0.307 Sum_probs=141.9
Q ss_pred CccccccccCC---CCceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcC-CCCCCCHHH
Q 027739 1 MIKYATKVEGL---GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALG-VVIDLDPEG 76 (219)
Q Consensus 1 ~~~~~~~~~~~---~~~~Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLeaLG-i~~~~~~~~ 76 (219)
|++++.+++.+ .+.+|+|||||||. |+||++|+++|++|+||+|||||++++++|++|+||+|| +++++++++
T Consensus 60 m~~~~~~l~~~~~~~~~vD~~gTGGdG~---~iSt~~a~ivAa~Gv~VaKhgnR~lss~~GTaD~LE~lgG~~v~ls~e~ 136 (405)
T TIGR02644 60 MIDSGEVLDLSSLPGPKVDKHSTGGVGD---KVSLVLGPIVAACGVKVAKMSGRGLGHTGGTIDKLESIPGFRTELSEAE 136 (405)
T ss_pred HHHhCCcCCCcccCCCeeEEeCCCCCCC---CchHHHHHHHHhCCCCEEeeCCCCCCCcchHHHHHHhcCCCCCCCCHHH
Confidence 56777777543 34899999999998 599999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHcCeeeeecc-cccHHhhhhHHHHhhcCCCchhHhHhhccCCCC--------CCeEEEee--------cChhhH
Q 027739 77 VRRCVDEAGIGFMMST-KYHPAMKFVRPVRKKLKVKTVFNILGPMLNPAC--------VPFAVVGV--------YNENLV 139 (219)
Q Consensus 77 a~~~L~~~gi~fl~a~-~~~P~l~~l~~lR~~Lg~RT~fNtl~pLlNP~~--------~~~~v~Gv--------~h~~~~ 139 (219)
+++++++.||+|++++ .++|+++.+.++|++++ |++|+ ||+||.- +.++|++| ++.+..
T Consensus 137 ~~~~l~~~G~~fl~~~~~l~PAdk~l~~lRd~~~--Tv~si--pLi~aSimSKK~A~G~~~~vlDVk~G~gAfm~~~e~a 212 (405)
T TIGR02644 137 FIEIVNKVGLAIIGQTKDLAPADKKLYALRDVTG--TVDSI--PLIASSIMSKKLAAGADAIVLDVKVGSGAFMKTLEDA 212 (405)
T ss_pred HHHHHHHcCeEEecCccccCcchhHHHHHhhccc--ccCcH--HHHHHHHHHHHHhcCCCeEEEeecccCCCCcCCHHHH
Confidence 9999999999999999 99999999999999999 99999 9999966 88999999 999999
Q ss_pred HHHHHHHHHcCCCeEE--EEEeCCcccc
Q 027739 140 LKMANALQRFGLKRAL--VVHSEGLDEM 165 (219)
Q Consensus 140 ~~~a~~l~~lG~~~al--vv~GeG~dEl 165 (219)
..+++.+..+|.+..+ ++...++||+
T Consensus 213 ~~LA~~~~~~g~~~g~~~~a~~t~md~p 240 (405)
T TIGR02644 213 KELAKLMVEIGKGAGRKTSALLTDMNQP 240 (405)
T ss_pred HHHHHHHHHHHHHcCCeEEEEecCCCcc
Confidence 9999999988765444 3334668886
No 14
>PRK04350 thymidine phosphorylase; Provisional
Probab=99.96 E-value=5.1e-29 Score=235.30 Aligned_cols=152 Identities=23% Similarity=0.328 Sum_probs=137.4
Q ss_pred CccccccccCC-CCceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHH
Q 027739 1 MIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR 79 (219)
Q Consensus 1 ~~~~~~~~~~~-~~~~Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLeaLGi~~~~~~~~a~~ 79 (219)
|++++.+++.+ .+.+|+||||||+.+++| +.++.++|++|++|.|||||+++|++||+|+||+|| +++++++++++
T Consensus 140 M~~~g~~l~~~~~~~vDkhgTGGd~g~t~S--~~~apivAA~Gv~VaKhgnRaiss~sGTaD~LEaLg-~v~ls~e~~~~ 216 (490)
T PRK04350 140 MVETGERLDWDRPPVVDKHSIGGVPGNRTT--LIVVPIVAAAGLTIPKTSSRAITSPAGTADTMEVLA-PVDLSVEEIKR 216 (490)
T ss_pred HHHhCCcccCCCCCeEEecCCCCCCCCCEe--HHHHHHHHhCCCceeeecCCCCCCCCchHHHHHHhh-cCCCCHHHHHH
Confidence 56777777654 358999999999999874 457777799999999999999999999999999999 99999999999
Q ss_pred HHHHcCeeeee--cccccHHhhhhHHHHhhcCCCchhHhHhhccC--------------CCCCCeEEEeecChhhHHHHH
Q 027739 80 CVDEAGIGFMM--STKYHPAMKFVRPVRKKLKVKTVFNILGPMLN--------------PACVPFAVVGVYNENLVLKMA 143 (219)
Q Consensus 80 ~L~~~gi~fl~--a~~~~P~l~~l~~lR~~Lg~RT~fNtl~pLlN--------------P~~~~~~v~Gv~h~~~~~~~a 143 (219)
++++.|+||+| ++.|||+++++.++|++++++|++|++++++| |.++..+ +++.+..+.++
T Consensus 217 ~l~~~G~~flfG~a~~l~PAdk~l~~vR~~l~vds~~li~aSImSKKlA~G~~~lvlDVp~G~ga~---v~~~~~A~~LA 293 (490)
T PRK04350 217 VVEKVGGCLVWGGAVNLSPADDILIRVERPLSIDPRGQLVASILSKKIAAGSTHVVIDIPVGPTAK---VRSVEEARRLA 293 (490)
T ss_pred HHHHcCEEEEECCccccCHHHHHHHHHhhhcCCCcHHHHHHHHhhhHhhcCCCceEEecccCCCCc---CCCHHHHHHHH
Confidence 99999999999 99999999999999999999999999999999 9998887 89999999999
Q ss_pred HHHHHcCCCeEEEEE
Q 027739 144 NALQRFGLKRALVVH 158 (219)
Q Consensus 144 ~~l~~lG~~~alvv~ 158 (219)
+.+..+|.+..+.+.
T Consensus 294 ~~~~~vg~~~g~~v~ 308 (490)
T PRK04350 294 RLFEEVGDRLGLRVE 308 (490)
T ss_pred HHHHHHHHhcCCeEE
Confidence 999888765444443
No 15
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=99.90 E-value=1.2e-23 Score=197.13 Aligned_cols=149 Identities=25% Similarity=0.319 Sum_probs=120.5
Q ss_pred CccccccccCC-----CCceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHc-CCCCCCCH
Q 027739 1 MIKYATKVEGL-----GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDP 74 (219)
Q Consensus 1 ~~~~~~~~~~~-----~~~~Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLeaL-Gi~~~~~~ 74 (219)
|++++.+++.+ .+.+|+|||||||. |+||++|+++|++|++|+|||||++++++|++|+||+| |++++.++
T Consensus 63 m~~sg~~i~~~~~d~~~~~vDkhgTGGdG~---niS~~~a~ivAa~Gv~VaKhg~R~lss~~GTaD~LE~LpG~~v~ls~ 139 (440)
T PRK05820 63 MRDSGEVLDWSSLNLNGPIVDKHSTGGVGD---KISLMLAPMVAACGGYVPMISGRGLGHTGGTLDKLEAIPGYRAFPSN 139 (440)
T ss_pred HHHhCCcCCCccccCCCCeEEEcCCCCCCc---cHHHHHHHHHHhCCCCEEeeCCCCCCCcccHHHHHHhCCCCCCCCCH
Confidence 45666666432 35799999999998 99999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHcCeeeeecc-cccHHhhhhHHHHhhc-CCCchhHhHhhccCC---CCCCeEEEee------cC------hh
Q 027739 75 EGVRRCVDEAGIGFMMST-KYHPAMKFVRPVRKKL-KVKTVFNILGPMLNP---ACVPFAVVGV------YN------EN 137 (219)
Q Consensus 75 ~~a~~~L~~~gi~fl~a~-~~~P~l~~l~~lR~~L-g~RT~fNtl~pLlNP---~~~~~~v~Gv------~h------~~ 137 (219)
+++.+++++.|++|++++ .|||+++.+.++|++. .+.++=-++...+.= .++.+.|+=| |= ..
T Consensus 140 e~~~~~l~~~G~~~~~~~~~l~PAdk~l~~lRdvt~tvds~pli~aSImSKK~A~G~~~lvlDVk~G~gAfmkt~~~A~~ 219 (440)
T PRK05820 140 DRFREILKDVGVAIIGQTSDLAPADKRLYALRDVTATVESIPLITASILSKKLAEGLDALVLDVKVGSGAFMKTYEEARE 219 (440)
T ss_pred HHHHHHHHHcCeEEEcCchhcChHHHHHHHHhcccCCCChHHHHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCHHHHHH
Confidence 999999999999999999 9999999999999877 455554555554443 3444544433 22 24
Q ss_pred hHHHHHHHHHHcCCC
Q 027739 138 LVLKMANALQRFGLK 152 (219)
Q Consensus 138 ~~~~~a~~l~~lG~~ 152 (219)
+.+.|.++.+.+|.+
T Consensus 220 La~~mv~ig~~~g~~ 234 (440)
T PRK05820 220 LARSMVEVANGAGVR 234 (440)
T ss_pred HHHHHHHHHHHcCCe
Confidence 556677777777875
No 16
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=99.89 E-value=4.2e-23 Score=195.23 Aligned_cols=154 Identities=22% Similarity=0.303 Sum_probs=127.9
Q ss_pred CccccccccCC-CCceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHH
Q 027739 1 MIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR 79 (219)
Q Consensus 1 ~~~~~~~~~~~-~~~~Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLeaLGi~~~~~~~~a~~ 79 (219)
|++++.+++.. ...+|+||||||+.+++|++ ++.++|++|++|.|||||+++|++|++|+||+|| +++++++++.+
T Consensus 145 M~~sg~~l~~~~~~~vDkhgTGGd~gnk~ni~--~apIvAA~Gv~VaKhsnRaits~sGTAD~LE~Lg-~v~ls~e~~~~ 221 (493)
T TIGR02645 145 MADTGEMLEWDREPIMDKHSIGGVPGNKTSLI--VVPIVAAAGLLIPKTSSRAITSAAGTADTMEVLT-RVALSAEEIKR 221 (493)
T ss_pred HHHhCCCccCCCCCeEEEeCCCCCCCCCEeHH--HHHHHHhCCCCeeeeCCCCcCCCccHHHHHHHhc-CCCCCHHHHHH
Confidence 56677777654 35899999999999999985 5666699999999999999999999999999999 99999999999
Q ss_pred HHHHcCeeeee--cccccHHhhhhHHHHhhcCCCchhHhHhhccCC---CCCCeEEEee------cC------hhhHHHH
Q 027739 80 CVDEAGIGFMM--STKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP---ACVPFAVVGV------YN------ENLVLKM 142 (219)
Q Consensus 80 ~L~~~gi~fl~--a~~~~P~l~~l~~lR~~Lg~RT~fNtl~pLlNP---~~~~~~v~Gv------~h------~~~~~~~ 142 (219)
++++.|+||++ ++.|||+++.+.++|+.+++.|+--++.-.+.= .++.+.|+=| |= ..+.+.|
T Consensus 222 ~ve~~G~~fl~G~a~~l~PAdk~i~~vR~~l~vds~~li~aSImSKKlA~G~~~lvlDvk~G~gAf~~~~~~A~~La~~~ 301 (493)
T TIGR02645 222 IVEKVGGCLVWGGALNLAPADDVLIRVERPLSIDPRAQMLASIMSKKIAAGSTHVLIDIPVGPGAKVRSLQEAERLARLF 301 (493)
T ss_pred HHHHCCEEEEECCCcccCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCeEEEeccccCCCcCCCHHHHHHHHHHH
Confidence 99999999999 999999999999999999999998888877753 3455666533 22 3455667
Q ss_pred HHHHHHcCCCeEEEEE
Q 027739 143 ANALQRFGLKRALVVH 158 (219)
Q Consensus 143 a~~l~~lG~~~alvv~ 158 (219)
.++.+.+|.+ ..++-
T Consensus 302 ~~vg~~~G~~-~~a~i 316 (493)
T TIGR02645 302 IELGDRLGVR-VECAI 316 (493)
T ss_pred HHHHHHcCCe-EEEEE
Confidence 7777777764 44443
No 17
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=99.88 E-value=4.5e-23 Score=192.77 Aligned_cols=154 Identities=27% Similarity=0.361 Sum_probs=122.5
Q ss_pred CccccccccCC-----CCceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHc-CCCCCCCH
Q 027739 1 MIKYATKVEGL-----GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDP 74 (219)
Q Consensus 1 ~~~~~~~~~~~-----~~~~Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLeaL-Gi~~~~~~ 74 (219)
|++++.+++.+ ...+|+|||||||. |+||++|+++|++|++|+|||||++++++||+|+||+| |++++.++
T Consensus 62 M~~sg~~i~~~~~~~~~~~vDkhgTGGdG~---niSt~~apivAA~Gv~VaKhgnR~iss~~GTaD~LEalpG~~v~ls~ 138 (437)
T TIGR02643 62 MRDSGDVLDWRSLDLNGPVVDKHSTGGVGD---VVSLMLGPIVAACGGYVPMISGRGLGHTGGTLDKLEAIPGYDIFPDP 138 (437)
T ss_pred HHHhCCcccCcccccCCCeeEecCCCCCCc---chhHHHHHHHHhCCCCeeeecCCCcCCCCchHHHHHhCCCCCCCCCH
Confidence 55677777543 35899999999998 89999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHcCeeeee-cccccHHhhhhHHHHh-hcCCCchhHhHhhccCC---CCCCeEEE------eecC------hh
Q 027739 75 EGVRRCVDEAGIGFMM-STKYHPAMKFVRPVRK-KLKVKTVFNILGPMLNP---ACVPFAVV------GVYN------EN 137 (219)
Q Consensus 75 ~~a~~~L~~~gi~fl~-a~~~~P~l~~l~~lR~-~Lg~RT~fNtl~pLlNP---~~~~~~v~------Gv~h------~~ 137 (219)
+++.+++++.|++|+. ++.++|+.+.+.++|+ -..+.++=-++.-.+.= .++.+.|+ |.|= ..
T Consensus 139 e~~~~~l~~~g~~f~gqa~~l~PADk~ly~lRDvt~tVds~pLi~aSImSKKlA~g~d~ivlDVk~G~gAfmk~~~~A~~ 218 (437)
T TIGR02643 139 ALFRRVVKDVGVAIIGQTADLAPADKRFYATRDVTATVESIPLITASILSKKLAAGLDALVMDVKVGNGAFMPTYEESEE 218 (437)
T ss_pred HHHHHHHHHcCceEEccCCCcCcchhceeeeeeecCCCCcHHHHHHHHHHHHHHcCCCeEEEEcCcCCCCcCCCHHHHHH
Confidence 9999999999999998 9999999999999995 44556655555544432 34455555 3333 34
Q ss_pred hHHHHHHHHHHcCCCeEEEE
Q 027739 138 LVLKMANALQRFGLKRALVV 157 (219)
Q Consensus 138 ~~~~~a~~l~~lG~~~alvv 157 (219)
+.+.|.++.+.+|.+-..++
T Consensus 219 LA~~mv~ig~~~g~~~~a~i 238 (437)
T TIGR02643 219 LARSLVDVANGAGVRTTALI 238 (437)
T ss_pred HHHHHHHHHHHcCCeEEEEE
Confidence 55666777777777533333
No 18
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=99.85 E-value=2e-21 Score=183.95 Aligned_cols=149 Identities=21% Similarity=0.327 Sum_probs=123.3
Q ss_pred CccccccccCC-CCceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHH
Q 027739 1 MIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR 79 (219)
Q Consensus 1 ~~~~~~~~~~~-~~~~Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLeaLGi~~~~~~~~a~~ 79 (219)
|++++.+++.. ...+|+||||||+.+++|++ ++.++|++|++|.|||||+++|++||+|+||+|+ ++++++++..+
T Consensus 146 M~~sg~~l~~~~~~vvDkhgTGGd~gnk~nl~--~apIVAA~Gv~VaKhsnRaits~sGTaD~LEsL~-~v~ls~e~~~~ 222 (500)
T TIGR03327 146 MAETGDMLSFDRHPIMDKHSIGGVPGNKISLL--VVPIVAAAGLTIPKTSSRAITSAAGTADVMEVLA-PVEFSADEIKR 222 (500)
T ss_pred HHHhCCcccCCCCCeEEEeCCCCCCCCCEEHH--HHHHHHhCCCCeeeeCCCCcCCCccHHHHHHHhh-CCCCCHHHHHH
Confidence 56677777643 35899999999999999996 4566689999999999999999999999999995 99999999999
Q ss_pred HHHHcCeeeee--cccccHHhhhhHHHHhhcCCCchhHhHhhccCC---CCCCeEEEee------cC------hhhHHHH
Q 027739 80 CVDEAGIGFMM--STKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP---ACVPFAVVGV------YN------ENLVLKM 142 (219)
Q Consensus 80 ~L~~~gi~fl~--a~~~~P~l~~l~~lR~~Lg~RT~fNtl~pLlNP---~~~~~~v~Gv------~h------~~~~~~~ 142 (219)
++++.|+||++ ++.|||+++.+..+|+-+.+-++=-++.-.+.= .++.+.|+=| |= ..+.+.|
T Consensus 223 ~v~~~G~~fl~Gqa~~l~PAdk~l~alrdt~tvds~~li~aSImSKKlA~G~d~lvlDVk~G~gAfm~~~~~A~~LA~~m 302 (500)
T TIGR03327 223 IVEKTGGCLVWGGATNLAPADDKIIKVERPLSIDPRGQMLASVMAKKGAIGADHVVIDIPVGKGAKVKTVEEGRKLARDF 302 (500)
T ss_pred HHHHCCEEEEECCccccCHHHHHHHHhccccCCCcHHHHHHHHHHHHHHcCCCeEEEEcCcCCCCcCCCHHHHHHHHHHH
Confidence 99999999999 999999999999999999999887777766643 3455555532 22 3456667
Q ss_pred HHHHHHcCCC
Q 027739 143 ANALQRFGLK 152 (219)
Q Consensus 143 a~~l~~lG~~ 152 (219)
.++...+|.+
T Consensus 303 v~vg~~~G~~ 312 (500)
T TIGR03327 303 IELGDRLGMN 312 (500)
T ss_pred HHHHHHcCCe
Confidence 7777777875
No 19
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=97.55 E-value=0.00013 Score=68.66 Aligned_cols=142 Identities=26% Similarity=0.313 Sum_probs=112.0
Q ss_pred CceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHc-CCCCCCCHHHHHHHHHHcCeeeeec
Q 027739 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDPEGVRRCVDEAGIGFMMS 91 (219)
Q Consensus 13 ~~~Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLeaL-Gi~~~~~~~~a~~~L~~~gi~fl~a 91 (219)
..+|-=-|||=|- ++|...+-++|+||++|.|-.+|+.++..|+.|-||.+ |++++.+.++..+++.+.|+.-+.+
T Consensus 78 ~~vDKHStGGVgd---k~sL~l~PiVAA~Gl~VpK~SgRgLghtGGT~DklEsi~g~~~~~~e~~fi~~~~~~g~aiiGq 154 (435)
T COG0213 78 PVVDKHSTGGVGD---KTSLILVPIVAAAGLPVPKMSGRGLGHTGGTLDKLESIPGVNLELDEIKFIEQVKDNGVAIIGQ 154 (435)
T ss_pred ceecccCCCCCCc---ccchhHHHHHHhcCCcccccccCccccCccchhhhhccCCcccCcCHHHHHHHhhcCCeEEEeC
Confidence 5677778888773 35667778999999999999999999999999999999 9999999999999999999999987
Q ss_pred c-cccHHhhhhHHHHhhcC-CCchhHhHhhccCC---CCCCeEEEee------cC------hhhHHHHHHHHHHcCCCeE
Q 027739 92 T-KYHPAMKFVRPVRKKLK-VKTVFNILGPMLNP---ACVPFAVVGV------YN------ENLVLKMANALQRFGLKRA 154 (219)
Q Consensus 92 ~-~~~P~l~~l~~lR~~Lg-~RT~fNtl~pLlNP---~~~~~~v~Gv------~h------~~~~~~~a~~l~~lG~~~a 154 (219)
. ++.|+=+.+..+|+.++ +-++=-++.-.+.= +++.+.++=| |= .++...|.++.+.+|.+ .
T Consensus 155 s~~LaPADkklyalrdvtaTVdsipLiasSIMSKKlA~G~~~ivlDVkvG~GAfmkt~~~a~~LA~~mv~ig~~~g~~-t 233 (435)
T COG0213 155 SGNLAPADKKLYALRDVTATVDSIPLIASSIMSKKLAAGADAIVLDVKVGSGAFMKTVEDARELAKAMVEIGKGLGRK-T 233 (435)
T ss_pred cCCcCcccceeEEeeeccccCCcHHHHHHHHHHHHHhccCCcEEEEecccCCCccCCHHHHHHHHHHHHHHHHhcCCe-E
Confidence 7 99999999999999999 77666666555532 3455666533 32 34555666667777764 4
Q ss_pred EEEE
Q 027739 155 LVVH 158 (219)
Q Consensus 155 lvv~ 158 (219)
.++-
T Consensus 234 ~a~i 237 (435)
T COG0213 234 TAVI 237 (435)
T ss_pred EEEE
Confidence 4443
No 20
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=79.99 E-value=24 Score=30.50 Aligned_cols=119 Identities=13% Similarity=0.102 Sum_probs=70.8
Q ss_pred ceeEeccCCCCCCCCcchHHHHH-HHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCC-----CCHHHHHHHHHHcCe-
Q 027739 14 AVDIVGTGGDGANTVNISTGASI-LAAACGAKVAKQGSRSSSSACGSADVLEALGVVID-----LDPEGVRRCVDEAGI- 86 (219)
Q Consensus 14 ~~Di~GtggDg~~t~NiSt~aA~-vlAa~Gv~V~kHG~~~~ssk~Gs~dvLeaLGi~~~-----~~~~~a~~~L~~~gi- 86 (219)
.+|+-||=++|.+.++- +..++ -+.+.|++++.=-|.+.-+.....+.|+.+|+++. .+...+.+.|.+.+.
T Consensus 5 ~~D~DGtl~~~~~~i~~-a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~~~iit~~~~~~~~l~~~~~~ 83 (249)
T TIGR01457 5 LIDLDGTMYKGKERIPE-AETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATLETVFTASMATADYMNDLKLE 83 (249)
T ss_pred EEeCCCceEcCCeeCcC-HHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEeeHHHHHHHHHHhcCCC
Confidence 47899998888887763 34443 57788999987666554455567889999999875 333444566666432
Q ss_pred --eee-ecccccHHhhhhHHHHhhcCCCchhHhHhhccCCCCCCeEEEeecChhhHHHHHHHHHHc
Q 027739 87 --GFM-MSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRF 149 (219)
Q Consensus 87 --~fl-~a~~~~P~l~~l~~lR~~Lg~RT~fNtl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~l~~l 149 (219)
.|+ ..+.+...+ ++.|+.. .+-.+...++|.....--+.+.+++..+
T Consensus 84 ~~v~~lg~~~l~~~l-------~~~g~~~---------~~~~~~~Vvvg~~~~~~y~~l~~a~~~l 133 (249)
T TIGR01457 84 KTVYVIGEEGLKEAI-------KEAGYVE---------DKEKPDYVVVGLDRQIDYEKFATATLAI 133 (249)
T ss_pred CEEEEEcChhHHHHH-------HHcCCEe---------cCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 222 112111111 2334421 1334567888887555555555666655
No 21
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=79.58 E-value=2.2 Score=33.48 Aligned_cols=90 Identities=18% Similarity=0.225 Sum_probs=66.0
Q ss_pred cCCCCCCCHHHHHHHHHHcCeeeeecccc--cHHhhhhHHHHhhcC--CCchhHhHhhccCCCCCCeEEEeecChhhHHH
Q 027739 66 LGVVIDLDPEGVRRCVDEAGIGFMMSTKY--HPAMKFVRPVRKKLK--VKTVFNILGPMLNPACVPFAVVGVYNENLVLK 141 (219)
Q Consensus 66 LGi~~~~~~~~a~~~L~~~gi~fl~a~~~--~P~l~~l~~lR~~Lg--~RT~fNtl~pLlNP~~~~~~v~Gv~h~~~~~~ 141 (219)
.|++-|.+-..|.+.|+++||.|-..... -|.-..|..+=++.| +++++|+-+....=++ .........+..+.
T Consensus 6 y~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g~~~~~li~t~~~~~r~L~--~~~~~~~~~~~~~~ 83 (117)
T COG1393 6 YGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSKLGDGVEELINTRGTTYRELN--LDKEDLSDEELIEA 83 (117)
T ss_pred EeCCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHcCccHHHHHHhccchHHHcC--CcccccChHHHHHH
Confidence 46788889999999999999999554444 666777888888898 9999999888766555 33345555666666
Q ss_pred HHHHHHHcCCCeEEEEEe
Q 027739 142 MANALQRFGLKRALVVHS 159 (219)
Q Consensus 142 ~a~~l~~lG~~~alvv~G 159 (219)
+.+--.. .+|-++|.+
T Consensus 84 i~~~~~L--ikRPivv~~ 99 (117)
T COG1393 84 LLENPSL--IKRPIVVDN 99 (117)
T ss_pred HHhChhh--ccCCeEEeC
Confidence 6655533 357788875
No 22
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=71.56 E-value=4.3 Score=30.59 Aligned_cols=70 Identities=21% Similarity=0.147 Sum_probs=46.2
Q ss_pred ceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCC-----CHHHHHHHHHH
Q 027739 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDL-----DPEGVRRCVDE 83 (219)
Q Consensus 14 ~~Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLeaLGi~~~~-----~~~~a~~~L~~ 83 (219)
.+|+-||=++|..-++=+.-+---+.+.|.|++..-|.+..++....+-|+.+|++++. +...+.+.|++
T Consensus 2 l~D~dGvl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts~~~~~~~l~~ 76 (101)
T PF13344_consen 2 LFDLDGVLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITSGMAAAEYLKE 76 (101)
T ss_dssp EEESTTTSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEHHHHHHHHHHH
T ss_pred EEeCccEeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEChHHHHHHHHHh
Confidence 36777887877775555555555667779999999998877777778888999998742 33444444544
No 23
>PRK10444 UMP phosphatase; Provisional
Probab=66.04 E-value=22 Score=30.99 Aligned_cols=71 Identities=13% Similarity=-0.009 Sum_probs=51.4
Q ss_pred ceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCC-----CHHHHHHHHHHc
Q 027739 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDL-----DPEGVRRCVDEA 84 (219)
Q Consensus 14 ~~Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLeaLGi~~~~-----~~~~a~~~L~~~ 84 (219)
.+|+-||=+++...++=+.-+---+.+.|.+++.=-|++..+.....+-|+.+|+++.. +...+++.|.+.
T Consensus 5 ~~DlDGtL~~~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~~~~i~ts~~~~~~~L~~~ 80 (248)
T PRK10444 5 ICDIDGVLMHDNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYTSAMATADFLRRQ 80 (248)
T ss_pred EEeCCCceEeCCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCHhhEecHHHHHHHHHHhC
Confidence 47888888877755554444444577889999988888876667778888999997753 255666777764
No 24
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=65.16 E-value=33 Score=30.46 Aligned_cols=81 Identities=14% Similarity=0.231 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHcCeeeeecccccHHh----hh---hHHHHhhc--------CCCchhHhHhhccCCCCCCeEEEeecCh
Q 027739 72 LDPEGVRRCVDEAGIGFMMSTKYHPAM----KF---VRPVRKKL--------KVKTVFNILGPMLNPACVPFAVVGVYNE 136 (219)
Q Consensus 72 ~~~~~a~~~L~~~gi~fl~a~~~~P~l----~~---l~~lR~~L--------g~RT~fNtl~pLlNP~~~~~~v~Gv~h~ 136 (219)
.+|.+.++.+.+.|..+++.=++--+. .+ +..+.+.. |+|| .+.++.++. ++..+.++|-.--
T Consensus 31 ~~P~~~a~~~~~~Ga~~lHlVDLdgA~~g~~~n~~~i~~i~~~~~~~vQvGGGIRs-~~~v~~ll~-~G~~rViiGt~av 108 (241)
T COG0106 31 DDPLEVAKKWSDQGAEWLHLVDLDGAKAGGPRNLEAIKEILEATDVPVQVGGGIRS-LEDVEALLD-AGVARVIIGTAAV 108 (241)
T ss_pred CCHHHHHHHHHHcCCcEEEEeeccccccCCcccHHHHHHHHHhCCCCEEeeCCcCC-HHHHHHHHH-CCCCEEEEeccee
Confidence 478888888999999999865443333 22 33333333 6777 588999999 8899999998877
Q ss_pred hhHHHHHHHHHHcCCCeEE
Q 027739 137 NLVLKMANALQRFGLKRAL 155 (219)
Q Consensus 137 ~~~~~~a~~l~~lG~~~al 155 (219)
.=.++..++++..| ++.+
T Consensus 109 ~~p~~v~~~~~~~g-~riv 126 (241)
T COG0106 109 KNPDLVKELCEEYG-DRIV 126 (241)
T ss_pred cCHHHHHHHHHHcC-CcEE
Confidence 77888889999998 4443
No 25
>cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase. Both enzymes catalyze the reaction of enolpyruvyl transfer.
Probab=62.97 E-value=14 Score=33.96 Aligned_cols=96 Identities=16% Similarity=0.025 Sum_probs=52.3
Q ss_pred CCCcEEeeCCCCCCCc--ccHHHHHHHcCCCCCCCHHHHHHHHHHcCeeeeecccccHHhhhhHHHHhhcCCCch--hHh
Q 027739 41 CGAKVAKQGSRSSSSA--CGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTV--FNI 116 (219)
Q Consensus 41 ~Gv~V~kHG~~~~ssk--~Gs~dvLeaLGi~~~~~~~~a~~~L~~~gi~fl~a~~~~P~l~~l~~lR~~Lg~RT~--fNt 116 (219)
.+.+|...|....+.+ ....++|+++|+.+...-. .+ +.+.... .. +.+. .+-+... -+.
T Consensus 96 ~~~~v~~~G~~~l~~r~~~~l~~~L~~~Ga~i~~~~~--------~~--~~~~~~~-~~---~~~~--~i~~~~~~s~q~ 159 (408)
T cd01554 96 ADFEVELFGDDSLSKRPMDRVTLPLKKMGASISGQEE--------RD--LPPLLKG-GK---NLGP--IHYEDPIASAQV 159 (408)
T ss_pred CCCeEEEECCchhhcCChHHHHHHHHHCCCEEEECCC--------CC--cCCEEEe-cC---CCCC--eEEeCCcccHHH
Confidence 3458888999887766 4479999999998753211 00 0000000 00 0000 0111110 111
Q ss_pred Hhhc--cCCC-CCCeEEEeecChhhHHHHHHHHHHcCCC
Q 027739 117 LGPM--LNPA-CVPFAVVGVYNENLVLKMANALQRFGLK 152 (219)
Q Consensus 117 l~pL--lNP~-~~~~~v~Gv~h~~~~~~~a~~l~~lG~~ 152 (219)
+..| +-|. .-...+.++.+.++.....++|+++|.+
T Consensus 160 ~~~ll~aa~~~~g~~~i~~~~~~~~i~~~~~~L~~~G~~ 198 (408)
T cd01554 160 KSALMFAALLAKGETVIIEAAKEPTINHTENMLQTFGGH 198 (408)
T ss_pred HHHHHHHHhcCCCceEEEEeCCCCCHHHHHHHHHHCCCE
Confidence 1111 1222 2446788888888999999999999973
No 26
>PLN02428 lipoic acid synthase
Probab=62.06 E-value=47 Score=30.96 Aligned_cols=110 Identities=14% Similarity=0.123 Sum_probs=68.9
Q ss_pred HHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHHHHH---Hc--Cee----ee--ecccccHHhhhhH
Q 027739 34 ASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVD---EA--GIG----FM--MSTKYHPAMKFVR 102 (219)
Q Consensus 34 aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLeaLGi~~~~~~~~a~~~L~---~~--gi~----fl--~a~~~~P~l~~l~ 102 (219)
+.-.++++|+.++-|+-+.. ..+...+.- ...+.++..+.|+ +. |+. || +-+..---...+.
T Consensus 197 lL~~L~eAG~d~i~hnlETv------~rL~~~Ir~-~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGLGET~Edv~e~l~ 269 (349)
T PLN02428 197 AVETVATSGLDVFAHNIETV------ERLQRIVRD-PRAGYKQSLDVLKHAKESKPGLLTKTSIMLGLGETDEEVVQTME 269 (349)
T ss_pred HHHHHHHcCCCEEccCccCc------HHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCeEEEeEEEecCCCHHHHHHHHH
Confidence 55667789999988886642 223333321 1123333333332 22 322 22 2344444444444
Q ss_pred HHHhhcCCCchhHhHhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCCCe
Q 027739 103 PVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKR 153 (219)
Q Consensus 103 ~lR~~Lg~RT~fNtl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lG~~~ 153 (219)
.+| ++|+..+ +++..+.|......|.=+.||+-.+.+.+....+|++.
T Consensus 270 ~Lr-elgvd~v--tigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~ 317 (349)
T PLN02428 270 DLR-AAGVDVV--TFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRY 317 (349)
T ss_pred HHH-HcCCCEE--eeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCce
Confidence 554 4555543 77788899888899999999999999999999999964
No 27
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=61.58 E-value=35 Score=28.41 Aligned_cols=90 Identities=23% Similarity=0.194 Sum_probs=64.3
Q ss_pred eEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCC-----CCCCCccc--HHHHHHHcC-CCCCCCHHHHHHHHHHc---
Q 027739 16 DIVGTGGDGANTVNISTGASILAAACGAKVAKQGS-----RSSSSACG--SADVLEALG-VVIDLDPEGVRRCVDEA--- 84 (219)
Q Consensus 16 Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~-----~~~ssk~G--s~dvLeaLG-i~~~~~~~~a~~~L~~~--- 84 (219)
=|.|++|.|+ ||.|..+++..|++=+--|+ -...+..| ...++++=+ ++=....+.+...+++.
T Consensus 4 iilG~pGaGK-----~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~ 78 (178)
T COG0563 4 LILGPPGAGK-----STLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCK 78 (178)
T ss_pred EEECCCCCCH-----HHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhccc
Confidence 3789999998 57899999999988776443 22334445 456677766 33334456777777775
Q ss_pred -CeeeeecccccHHhhhhHHHHhhcCC
Q 027739 85 -GIGFMMSTKYHPAMKFVRPVRKKLKV 110 (219)
Q Consensus 85 -gi~fl~a~~~~P~l~~l~~lR~~Lg~ 110 (219)
|+-|..-|.....+..+...-+++|.
T Consensus 79 ~~~I~dg~PR~~~qa~~l~r~l~~~g~ 105 (178)
T COG0563 79 AGFILDGFPRTLCQARALKRLLKELGV 105 (178)
T ss_pred CeEEEeCCCCcHHHHHHHHHHHHHcCC
Confidence 68888899999999888877666663
No 28
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=58.46 E-value=1e+02 Score=29.26 Aligned_cols=135 Identities=14% Similarity=0.197 Sum_probs=78.1
Q ss_pred CceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHH----HHcCCCC--CCCHHHHHHHHHH---
Q 027739 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVL----EALGVVI--DLDPEGVRRCVDE--- 83 (219)
Q Consensus 13 ~~~Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvL----eaLGi~~--~~~~~~a~~~L~~--- 83 (219)
..+=++|++|-|+.|.=...++.+.+...|.+|..=-.+ +-+.|+.+-| +.+|+++ ..++++..+.+++
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D--~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~ 299 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLD--TYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRD 299 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECC--ccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCC
Confidence 356789999999876554444444333557777764433 3456654444 4588876 4566666666654
Q ss_pred cCeeeeecccccHH-hhhhHHHHhhcCCCchhHhHhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCCCeEEEEE
Q 027739 84 AGIGFMMSTKYHPA-MKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH 158 (219)
Q Consensus 84 ~gi~fl~a~~~~P~-l~~l~~lR~~Lg~RT~fNtl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lG~~~alvv~ 158 (219)
..+.+++.+-+.|. ...+..+++-+. ...+|......+-....+.-.....+.+..++..+.++=+
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~---------~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI~TK 366 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIE---------FSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIFTK 366 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHh---------ccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEEEec
Confidence 56788888877654 222333443322 1224543334344445556666677788888876554444
No 29
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=58.24 E-value=30 Score=30.14 Aligned_cols=72 Identities=18% Similarity=0.153 Sum_probs=49.3
Q ss_pred ceeEeccCCCCCC----CCcchHHHH-HHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCC-----CCHHHHHHHHHH
Q 027739 14 AVDIVGTGGDGAN----TVNISTGAS-ILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID-----LDPEGVRRCVDE 83 (219)
Q Consensus 14 ~~Di~GtggDg~~----t~NiSt~aA-~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLeaLGi~~~-----~~~~~a~~~L~~ 83 (219)
.+|+-||=+++.. -+. ...-+ --+.+.|.+++.=-|++..++....+.|+.+|+++. .+...+.+.|++
T Consensus 5 ~~D~DGtl~~~~~~~~~~~~-~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~~~i~ts~~~~~~~l~~ 83 (257)
T TIGR01458 5 LLDISGVLYISDAKSGVAVP-GSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISEDEVFTPAPAARQLLEE 83 (257)
T ss_pred EEeCCCeEEeCCCcccCcCC-CHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCCHHHeEcHHHHHHHHHHh
Confidence 4677788555544 333 33333 356668999998888887777788899999999864 233555677777
Q ss_pred cCe
Q 027739 84 AGI 86 (219)
Q Consensus 84 ~gi 86 (219)
.++
T Consensus 84 ~~~ 86 (257)
T TIGR01458 84 KQL 86 (257)
T ss_pred cCC
Confidence 654
No 30
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=57.20 E-value=48 Score=26.41 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=15.1
Q ss_pred HHHHHHHHcCCCcEEeeC
Q 027739 32 TGASILAAACGAKVAKQG 49 (219)
Q Consensus 32 t~aA~vlAa~Gv~V~kHG 49 (219)
.-+|..+|+.|.++...|
T Consensus 40 ~n~a~~l~~LG~~~~~~~ 57 (196)
T cd00287 40 ANVAVALARLGVSVTLVG 57 (196)
T ss_pred HHHHHHHHHCCCcEEEEE
Confidence 346788999999999999
No 31
>PF02641 DUF190: Uncharacterized ACR, COG1993; InterPro: IPR003793 This is an uncharacterised domain found in proteins of unknown function.; PDB: 2DCL_C 1O51_A.
Probab=55.18 E-value=23 Score=26.71 Aligned_cols=57 Identities=14% Similarity=0.145 Sum_probs=30.5
Q ss_pred ecChhhHHHHHHHHHHcCCCeEEEEEe-CCccccCCCCceEEEEEeCCc-EEEEEeccC
Q 027739 133 VYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPGLILDVTQEK-IERFSFDPC 189 (219)
Q Consensus 133 v~h~~~~~~~a~~l~~lG~~~alvv~G-eG~dEls~~~~t~i~~v~~g~-i~~~~l~P~ 189 (219)
..++++.+.+.+.++..|...+.|++| +|.-.=..-...++.++.+.- +.-..++.+
T Consensus 16 ~~g~~l~~~ll~~~~~~gi~GaTV~rgi~G~G~~~~ih~~~~~~l~~~lPvvIe~id~~ 74 (101)
T PF02641_consen 16 WGGKPLYEWLLERAREAGIAGATVFRGIEGFGSSGRIHSARLLELSDDLPVVIEFIDTE 74 (101)
T ss_dssp ETTEEHHHHHHHHHHHTT-SEEEEEE-SEEEE-------------TTS-EEEEEEEEEH
T ss_pred cCceEHHHHHHHHHHHCCCCeEEEEcceeeeCCCCcccccchhhhcCCCCEEEEEEcCH
Confidence 346788889999999999999999999 886443333455666776653 333335553
No 32
>PRK10853 putative reductase; Provisional
Probab=51.02 E-value=14 Score=28.77 Aligned_cols=55 Identities=15% Similarity=0.191 Sum_probs=40.9
Q ss_pred cCCCCCCCHHHHHHHHHHcCeeeeecc--cccHHhhhhHHHHhhcCCCchhHhHhhc
Q 027739 66 LGVVIDLDPEGVRRCVDEAGIGFMMST--KYHPAMKFVRPVRKKLKVKTVFNILGPM 120 (219)
Q Consensus 66 LGi~~~~~~~~a~~~L~~~gi~fl~a~--~~~P~l~~l~~lR~~Lg~RT~fNtl~pL 120 (219)
.|++-|.+-.+|.+.|+++|+.|-+.. .--|.-..|..+=+++|+..++|+=+..
T Consensus 5 y~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l~~~g~~~l~n~~~~~ 61 (118)
T PRK10853 5 YGIKNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFIDELGWEALLNTRGTT 61 (118)
T ss_pred EcCCCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHHHHcCHHHHHhcCCch
Confidence 477888888999999999999988765 3456777777777788866555544443
No 33
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=49.65 E-value=29 Score=30.69 Aligned_cols=71 Identities=14% Similarity=0.256 Sum_probs=42.0
Q ss_pred HHHHHHHcCeeeeecccc------cHHhhhhHHHHhhcCCCchhHhHhhccCCCCCCeEEEeecChhhHHHHHHHHHHcC
Q 027739 77 VRRCVDEAGIGFMMSTKY------HPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFG 150 (219)
Q Consensus 77 a~~~L~~~gi~fl~a~~~------~P~l~~l~~lR~~Lg~RT~fNtl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lG 150 (219)
..+.|++.+.-|+....- ...+.-...++++.|++++.|...+ +. ++.-.+-....+..+|
T Consensus 20 ~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r------------~~-n~~~l~~~L~~~~~~G 86 (272)
T TIGR00676 20 TVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCI------------GA-TREEIREILREYRELG 86 (272)
T ss_pred HHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeec------------CC-CHHHHHHHHHHHHHCC
Confidence 345566777777765432 2234344567777787777665433 32 2333333334457889
Q ss_pred CCeEEEEEeC
Q 027739 151 LKRALVVHSE 160 (219)
Q Consensus 151 ~~~alvv~Ge 160 (219)
+++.++++||
T Consensus 87 i~nvL~l~GD 96 (272)
T TIGR00676 87 IRHILALRGD 96 (272)
T ss_pred CCEEEEeCCC
Confidence 9999999984
No 34
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=45.27 E-value=1.4e+02 Score=27.97 Aligned_cols=118 Identities=22% Similarity=0.300 Sum_probs=68.5
Q ss_pred HHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHHHHHHcCeeeee--cccccHHhhhhHHHHhhcCC
Q 027739 33 GASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMM--STKYHPAMKFVRPVRKKLKV 110 (219)
Q Consensus 33 ~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLeaLGi~~~~~~~~a~~~L~~~gi~fl~--a~~~~P~l~~l~~lR~~Lg~ 110 (219)
++|.+|++.|+.|. |.+..... ..+-|+++|+.+... .. .+.+++.-+.... .+.-+|.+.... ++.+-+
T Consensus 14 ~la~~L~~~G~~v~--~~D~~~~~--~~~~l~~~gi~~~~g-~~-~~~~~~~d~vV~spgi~~~~p~~~~a~--~~~i~v 85 (448)
T TIGR01082 14 GIAEILLNRGYQVS--GSDIAENA--TTKRLEALGIPIYIG-HS-AENLDDADVVVVSAAIKDDNPEIVEAK--ERGIPV 85 (448)
T ss_pred HHHHHHHHCCCeEE--EECCCcch--HHHHHHHCcCEEeCC-CC-HHHCCCCCEEEECCCCCCCCHHHHHHH--HcCCce
Confidence 36788889999997 55543333 445588899987543 11 2234444433332 244566664443 234445
Q ss_pred CchhHhHhhccCCCCCCeEEEeecChh-hHHHHHHHHHHcCCCeEEEEEe
Q 027739 111 KTVFNILGPMLNPACVPFAVVGVYNEN-LVLKMANALQRFGLKRALVVHS 159 (219)
Q Consensus 111 RT~fNtl~pLlNP~~~~~~v~Gv~h~~-~~~~~a~~l~~lG~~~alvv~G 159 (219)
.+=...+..++++ .....|.|-.=+. .-.+++++|+..|.+...++-|
T Consensus 86 ~~~~el~~~~~~~-~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg 134 (448)
T TIGR01082 86 IRRAEMLAELMRF-RHSIAVAGTHGKTTTTAMIAVILKEAGLDPTVVVGG 134 (448)
T ss_pred EeHHHHHHHHHhc-CcEEEEECCCChHHHHHHHHHHHHHcCCCCeEEECc
Confidence 5666667777653 2345566666554 4567778888888744454545
No 35
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=43.08 E-value=19 Score=28.48 Aligned_cols=56 Identities=14% Similarity=0.065 Sum_probs=44.6
Q ss_pred cCCCCCCCHHHHHHHHHHcCeeeeecc--cccHHhhhhHHHHhhcCCCchhHhHhhcc
Q 027739 66 LGVVIDLDPEGVRRCVDEAGIGFMMST--KYHPAMKFVRPVRKKLKVKTVFNILGPML 121 (219)
Q Consensus 66 LGi~~~~~~~~a~~~L~~~gi~fl~a~--~~~P~l~~l~~lR~~Lg~RT~fNtl~pLl 121 (219)
.|++-|.+-.+|.+.|+++|+.|-+.. .--|.-..|..+=+++|.+.++|+-+...
T Consensus 6 Y~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l~~~g~~~lin~~~~~~ 63 (126)
T TIGR01616 6 YEKPGCANNARQKAALKASGHDVEVQDILKEPWHADTLRPYFGNKPVGSWFNRAAPRV 63 (126)
T ss_pred EeCCCCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHHHHcCHHHHHhccchHh
Confidence 467888889999999999999988766 44577777888878888888888777754
No 36
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=42.45 E-value=20 Score=27.29 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=41.4
Q ss_pred CCCCCCCHHHHHHHHHHcCeeeeecc--cccHHhhhhHHHHhhcCCCchhHhHhhcc
Q 027739 67 GVVIDLDPEGVRRCVDEAGIGFMMST--KYHPAMKFVRPVRKKLKVKTVFNILGPML 121 (219)
Q Consensus 67 Gi~~~~~~~~a~~~L~~~gi~fl~a~--~~~P~l~~l~~lR~~Lg~RT~fNtl~pLl 121 (219)
|.+-|.+-.+|.+.|+++|+.|-... .--|.-..|..+-+++|++.++|+=++..
T Consensus 5 ~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~~~g~~~li~~~~~~y 61 (105)
T cd03035 5 GIKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLAKVGWETLLNKRGTTW 61 (105)
T ss_pred eCCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHHHhChHHHHccCchHH
Confidence 56677777889999999998887665 44677777888888888777776665543
No 37
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=41.93 E-value=3.4e+02 Score=26.44 Aligned_cols=125 Identities=24% Similarity=0.339 Sum_probs=86.0
Q ss_pred ceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCC--CCHHHHHHHHHHcCeeeeec
Q 027739 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID--LDPEGVRRCVDEAGIGFMMS 91 (219)
Q Consensus 14 ~~Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLeaLGi~~~--~~~~~a~~~L~~~gi~fl~a 91 (219)
.+-|+|+|. ...|.+|.+.|++|- |++...+. ..+-|+++|+.+- .+++.. .+... .+..
T Consensus 12 fIGIgG~GM---------sglA~iL~~~G~~Vs--GSD~~~~~--~t~~L~~~G~~i~~gh~~~ni----~~~~~-VV~s 73 (459)
T COG0773 12 FIGIGGIGM---------SGLAEILLNLGYKVS--GSDLAESP--MTQRLEALGIEIFIGHDAENI----LDADV-VVVS 73 (459)
T ss_pred EEeeccccH---------HHHHHHHHhCCCceE--CccccccH--HHHHHHHCCCeEeCCCCHHHc----CCCce-EEEe
Confidence 477888776 567899999999998 88775544 7889999999875 333322 22222 3443
Q ss_pred c---cccHHhhhhHHHHhhcCCCchhHhHhhccCCCCCCeEEEeecChh-hHHHHHHHHHHcCCCeEEEEEe
Q 027739 92 T---KYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNEN-LVLKMANALQRFGLKRALVVHS 159 (219)
Q Consensus 92 ~---~~~P~l~~l~~lR~~Lg~RT~fNtl~pLlNP~~~~~~v~Gv~h~~-~~~~~a~~l~~lG~~~alvv~G 159 (219)
. .=+|.+. ...++.+-+-+=--.|+-|+.. +....|.|.-=+. .-.+++.++...|.+-..++-|
T Consensus 74 ~Ai~~~NpEi~--~A~e~~ipi~~r~e~Laelm~~-~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~iGG 142 (459)
T COG0773 74 NAIKEDNPEIV--AALERGIPVISRAEMLAELMRF-RTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIGG 142 (459)
T ss_pred cccCCCCHHHH--HHHHcCCCeEcHHHHHHHHHhC-CeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEEECc
Confidence 3 4455552 3334455666667888888888 6677777776554 4567788888888887888876
No 38
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=41.32 E-value=51 Score=29.53 Aligned_cols=70 Identities=11% Similarity=0.059 Sum_probs=44.2
Q ss_pred HHHHHHcCeeeeeccccc------HHhhhhHHHHhhcCCCchhHhHhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCC
Q 027739 78 RRCVDEAGIGFMMSTKYH------PAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGL 151 (219)
Q Consensus 78 ~~~L~~~gi~fl~a~~~~------P~l~~l~~lR~~Lg~RT~fNtl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lG~ 151 (219)
.+.|.+.+..|+....-. ..+.-...+|++.|++++.|...+ +....++.+ ...-+..+|+
T Consensus 22 ~~~l~~~~p~fvsvT~~~~~~~~~~t~~~~~~l~~~~g~~~i~Hltcr------------~~~~~~l~~-~L~~~~~~Gi 88 (281)
T TIGR00677 22 MDRMVASGPLFIDITWGAGGTTAELTLTIASRAQNVVGVETCMHLTCT------------NMPIEMIDD-ALERAYSNGI 88 (281)
T ss_pred HHHHhhCCCCEEEeccCCCCcchhhHHHHHHHHHHhcCCCeeEEeccC------------CCCHHHHHH-HHHHHHHCCC
Confidence 344566777777665422 356667788888898887766533 222223333 3333478899
Q ss_pred CeEEEEEeC
Q 027739 152 KRALVVHSE 160 (219)
Q Consensus 152 ~~alvv~Ge 160 (219)
++.++++||
T Consensus 89 ~niLal~GD 97 (281)
T TIGR00677 89 QNILALRGD 97 (281)
T ss_pred CEEEEECCC
Confidence 999999984
No 39
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=41.04 E-value=20 Score=27.07 Aligned_cols=90 Identities=14% Similarity=0.135 Sum_probs=54.3
Q ss_pred CCCCCCCHHHHHHHHHHcCeeeeeccccc--HHhhhhHHHHhhcC--CCchhHhHhhccCCCCCCeEEEeecChhhHHHH
Q 027739 67 GVVIDLDPEGVRRCVDEAGIGFMMSTKYH--PAMKFVRPVRKKLK--VKTVFNILGPMLNPACVPFAVVGVYNENLVLKM 142 (219)
Q Consensus 67 Gi~~~~~~~~a~~~L~~~gi~fl~a~~~~--P~l~~l~~lR~~Lg--~RT~fNtl~pLlNP~~~~~~v~Gv~h~~~~~~~ 142 (219)
|++-|.+-.+|.+.|+++|+.|-+....- |.-..|..+=+.+| +..++|+=++...-.. ....-.....++.+.+
T Consensus 2 ~~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l~~~~~~~~~lin~~~~~~k~l~-~~~~~~~s~~e~i~~l 80 (110)
T PF03960_consen 2 GNPNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELLSKLGNGPDDLINTRSKTYKELG-KLKKDDLSDEELIELL 80 (110)
T ss_dssp E-TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHHHHHTSSGGGGB-TTSHHHHHTT-HHHCTTSBHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHHHHhcccHHHHhcCccchHhhhh-hhhhhhhhhHHHHHHH
Confidence 56677788899999999999988766654 77778888888888 6777766665444333 1222234445566665
Q ss_pred HHHHHHcCCCeEEEEEe
Q 027739 143 ANALQRFGLKRALVVHS 159 (219)
Q Consensus 143 a~~l~~lG~~~alvv~G 159 (219)
.+=-..+ +|=+++.|
T Consensus 81 ~~~p~Li--kRPIi~~~ 95 (110)
T PF03960_consen 81 LENPKLI--KRPIIVDG 95 (110)
T ss_dssp HHSGGGB---SSEEEET
T ss_pred HhChhhe--eCCEEEEC
Confidence 5544444 45677776
No 40
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=38.26 E-value=3.4e+02 Score=26.19 Aligned_cols=135 Identities=13% Similarity=0.168 Sum_probs=75.2
Q ss_pred ceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcccH----HHHHHHcCCCCC--CCHHHHHHHHHHc--C
Q 027739 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGS----ADVLEALGVVID--LDPEGVRRCVDEA--G 85 (219)
Q Consensus 14 ~~Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~~ssk~Gs----~dvLeaLGi~~~--~~~~~a~~~L~~~--g 85 (219)
.+=++|.+|-|+.|.-...++.. ....|.+|..-..+. -+.++ ..-.+.+|++.. .++.++.+.+++. .
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~-~~~~G~~V~Lit~Dt--~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D 301 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKY-FLHMGKSVSLYTTDN--YRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSE 301 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-HHhcCCeEEEecccc--hhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCC
Confidence 46689999999865433333322 234578888766544 34443 334467788764 2355666666543 4
Q ss_pred eeeeecccccH-HhhhhHHHHhhcCCCchhHhHhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCCCeEEEEE
Q 027739 86 IGFMMSTKYHP-AMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH 158 (219)
Q Consensus 86 i~fl~a~~~~P-~l~~l~~lR~~Lg~RT~fNtl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lG~~~alvv~ 158 (219)
+.+++.+-+.| ....+..+++.+. ..++ -+|...-..+-..++..-..-.++.++.+|.++.++=|
T Consensus 302 ~VLIDTaGr~~rd~~~l~eL~~~~~------~~~~-~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTK 368 (432)
T PRK12724 302 LILIDTAGYSHRNLEQLERMQSFYS------CFGE-KDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTK 368 (432)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHHH------hhcC-CCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEc
Confidence 56666666653 2233333333211 1111 11222223445566666777778888899997666666
No 41
>PF06324 Pigment_DH: Pigment-dispersing hormone (PDH); InterPro: IPR009396 This family consists of several eukaryotic pigment-dispersing hormone (PDH) proteins. The pigment-dispersing hormone (PDH) is produced in the eyestalks of Crustacea where it induces light-adapting movements of pigment in the compound eye and regulates the pigment dispersion in the chromatophores [].; GO: 0005179 hormone activity, 0009416 response to light stimulus, 0005576 extracellular region
Probab=37.88 E-value=3.4 Score=22.16 Aligned_cols=17 Identities=47% Similarity=0.598 Sum_probs=12.6
Q ss_pred cceeeEEeccCCCCCCC
Q 027739 203 NSFLIVSILDYPTKMTE 219 (219)
Q Consensus 203 ~~~~~~~~~~~~~~~~~ 219 (219)
||=+|-|+|.-|..|.+
T Consensus 1 NselINslLglpk~m~d 17 (18)
T PF06324_consen 1 NSELINSLLGLPKVMND 17 (18)
T ss_pred ChHHHHHHHcchhhccc
Confidence 45566678888998875
No 42
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=37.51 E-value=32 Score=26.30 Aligned_cols=55 Identities=16% Similarity=0.200 Sum_probs=38.6
Q ss_pred CCCCCCCHHHHHHHHHHcCeeeeecccc--cHHhhhhHHHHhhcC--CCchhHhHhhcc
Q 027739 67 GVVIDLDPEGVRRCVDEAGIGFMMSTKY--HPAMKFVRPVRKKLK--VKTVFNILGPML 121 (219)
Q Consensus 67 Gi~~~~~~~~a~~~L~~~gi~fl~a~~~--~P~l~~l~~lR~~Lg--~RT~fNtl~pLl 121 (219)
+.+-|.+-.+|.+.|++.|+.|-..... .+....+..+-+.+| +..++|+=++..
T Consensus 5 ~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~~~~~~~~~~lin~~~~~~ 63 (117)
T TIGR01617 5 GSPNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDILSLLEDGIDPLLNTRGQSY 63 (117)
T ss_pred eCCCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHHHHcCCCHHHheeCCCcch
Confidence 4566677788999999999888776543 366677777777777 455555554443
No 43
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=36.34 E-value=29 Score=26.85 Aligned_cols=56 Identities=16% Similarity=0.103 Sum_probs=42.3
Q ss_pred CCCCCCCHHHHHHHHHHcCeeeeecccc--cHHhhhhHHHHhhcCCCchhHhHhhccC
Q 027739 67 GVVIDLDPEGVRRCVDEAGIGFMMSTKY--HPAMKFVRPVRKKLKVKTVFNILGPMLN 122 (219)
Q Consensus 67 Gi~~~~~~~~a~~~L~~~gi~fl~a~~~--~P~l~~l~~lR~~Lg~RT~fNtl~pLlN 122 (219)
|.+-|.+-.+|.+.|+++|+.|-..... -|.-..|..+-+++|++.++|+-+...-
T Consensus 6 ~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l~~~g~~~l~n~~~~~~r 63 (113)
T cd03033 6 EKPGCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFFGDLPVAEWFNPAAPRVK 63 (113)
T ss_pred ECCCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHHHHcCHHHHHhcccHHHH
Confidence 5667777889999999999988776533 5677778888888888777776665543
No 44
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=35.83 E-value=1.8e+02 Score=25.25 Aligned_cols=90 Identities=17% Similarity=0.240 Sum_probs=46.6
Q ss_pred cCCCCCCCHHHHHHHHHHcCeeeeecc----------cccHHhhhhHHHHhhcCCCchhHhHhhccCCCCCCeEEEeecC
Q 027739 66 LGVVIDLDPEGVRRCVDEAGIGFMMST----------KYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYN 135 (219)
Q Consensus 66 LGi~~~~~~~~a~~~L~~~gi~fl~a~----------~~~P~l~~l~~lR~~Lg~RT~fNtl~pLlNP~~~~~~v~Gv~h 135 (219)
+|.|-.....+..+.+++.|.-++... .+-|.. ....+++-..++-.+..+..+-+-...+..++++++
T Consensus 8 ~G~P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a-~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n 86 (242)
T cd04724 8 AGDPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAA-SERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYN 86 (242)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHH-HHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecC
Confidence 355554556677777777777777655 222221 122233333334455555555433333455666666
Q ss_pred hhhH---HHHHHHHHHcCCCeEEEE
Q 027739 136 ENLV---LKMANALQRFGLKRALVV 157 (219)
Q Consensus 136 ~~~~---~~~a~~l~~lG~~~alvv 157 (219)
|-+. +.+.+.+...|.+ .+++
T Consensus 87 ~~~~~G~~~fi~~~~~aG~~-giii 110 (242)
T cd04724 87 PILQYGLERFLRDAKEAGVD-GLII 110 (242)
T ss_pred HHHHhCHHHHHHHHHHCCCc-EEEE
Confidence 5332 4555556666663 4444
No 45
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=35.81 E-value=49 Score=25.19 Aligned_cols=90 Identities=8% Similarity=0.077 Sum_probs=55.8
Q ss_pred cCCCCCCCHHHHHHHHHHcCeeeeecc--cccHHhhhhHHHHhhc--CCCchhHhHhhccCCCCCCeEEEeecChhhHHH
Q 027739 66 LGVVIDLDPEGVRRCVDEAGIGFMMST--KYHPAMKFVRPVRKKL--KVKTVFNILGPMLNPACVPFAVVGVYNENLVLK 141 (219)
Q Consensus 66 LGi~~~~~~~~a~~~L~~~gi~fl~a~--~~~P~l~~l~~lR~~L--g~RT~fNtl~pLlNP~~~~~~v~Gv~h~~~~~~ 141 (219)
.|.+-|.+-.+|.+.|++.|+.|-... .-.|....+..+=+.+ |.+.++|+=++..--.+... -.....+..+.
T Consensus 5 Y~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~n~~~~~~k~l~~~~--~~ls~~e~i~~ 82 (115)
T cd03032 5 YTSPSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILSLTENGVEDIISTRSKAFKNLNIDI--DELSLSELIRL 82 (115)
T ss_pred EeCCCCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHHHHhcCCHHHHHhcCcHHHHHcCCCc--ccCCHHHHHHH
Confidence 356677778899999999998877654 4566777788877777 66777777666555443221 12233344444
Q ss_pred HHHHHHHcCCCeEEEEEe
Q 027739 142 MANALQRFGLKRALVVHS 159 (219)
Q Consensus 142 ~a~~l~~lG~~~alvv~G 159 (219)
+.+==.++ +|=+++.|
T Consensus 83 l~~~p~Li--kRPii~~~ 98 (115)
T cd03032 83 ISEHPSLL--RRPIIIDE 98 (115)
T ss_pred HHhChhhe--eCCEEEeC
Confidence 44433333 46677765
No 46
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=35.61 E-value=77 Score=28.62 Aligned_cols=46 Identities=7% Similarity=0.197 Sum_probs=27.5
Q ss_pred HHHHhhcCCCchhHhHhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCCCeEEEEEeC
Q 027739 102 RPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSE 160 (219)
Q Consensus 102 ~~lR~~Lg~RT~fNtl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lG~~~alvv~Ge 160 (219)
..++++.|++++.|+... +. ++.-++....-+..+|+++.++++||
T Consensus 75 ~~i~~~~g~~~i~Hltcr------------~~-n~~~l~~~L~~~~~~GI~niLaLrGD 120 (296)
T PRK09432 75 KGIKKRTGLEAAPHLTCI------------DA-TPDELRTIAKDYWNNGIRHIVALRGD 120 (296)
T ss_pred HHHHHHhCCCeeeecccC------------CC-CHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 356667777777655433 22 23333333334578888888888884
No 47
>PRK12928 lipoyl synthase; Provisional
Probab=35.04 E-value=1.3e+02 Score=26.96 Aligned_cols=107 Identities=14% Similarity=0.189 Sum_probs=72.9
Q ss_pred HHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHHHHH---HcC--e----eee--ecccccHHhhhhHHH
Q 027739 36 ILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVD---EAG--I----GFM--MSTKYHPAMKFVRPV 104 (219)
Q Consensus 36 ~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLeaLGi~~~~~~~~a~~~L~---~~g--i----~fl--~a~~~~P~l~~l~~l 104 (219)
..+.++|..++.|+-. ++.++++.+.-. .+.++..+.++ +.| + ++| +-+..---...+..+
T Consensus 157 ~~l~~Ag~~i~~hnlE------t~~~vl~~m~r~--~t~e~~le~l~~ak~~gp~i~~~s~iIvG~GET~ed~~etl~~L 228 (290)
T PRK12928 157 ATVLAAKPDVFNHNLE------TVPRLQKAVRRG--ADYQRSLDLLARAKELAPDIPTKSGLMLGLGETEDEVIETLRDL 228 (290)
T ss_pred HHHHHcCchhhcccCc------CcHHHHHHhCCC--CCHHHHHHHHHHHHHhCCCceecccEEEeCCCCHHHHHHHHHHH
Confidence 3455678888888742 347888877643 45666655554 333 2 111 245555555666666
Q ss_pred HhhcCCCchhHhHhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCCCe
Q 027739 105 RKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKR 153 (219)
Q Consensus 105 R~~Lg~RT~fNtl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lG~~~ 153 (219)
| ++++. +=++++-+.|..-..-|..+.+|+-.+.+.+....+|++.
T Consensus 229 r-el~~d--~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~ 274 (290)
T PRK12928 229 R-AVGCD--RLTIGQYLRPSLAHLPVQRYWTPEEFEALGQIARELGFSH 274 (290)
T ss_pred H-hcCCC--EEEEEcCCCCCccCCceeeccCHHHHHHHHHHHHHcCCce
Confidence 5 46663 3356788888888889999999999999999999999963
No 48
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=33.18 E-value=1.2e+02 Score=26.60 Aligned_cols=73 Identities=10% Similarity=0.092 Sum_probs=42.5
Q ss_pred HHHHHHHHHcCeeeeecccc------cHHhhhhHHHHhhcCCCchhHhHhhccCCCCCCeEEEeecChhhHHHHHHHHHH
Q 027739 75 EGVRRCVDEAGIGFMMSTKY------HPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQR 148 (219)
Q Consensus 75 ~~a~~~L~~~gi~fl~a~~~------~P~l~~l~~lR~~Lg~RT~fNtl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~l~~ 148 (219)
+++.+.++..+..|+....- ...+.....++++.|++++.|+..+=.|. .++.+.+ ..+..
T Consensus 18 ~~~~~~~~~~~~d~v~Vt~~~~g~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~------------~~l~~~L-~~~~~ 84 (274)
T cd00537 18 EAAADLLGALDPDFVSVTDGAGGSTRDMTLLAAARILQEGGIEPIPHLTCRDRNR------------IELQSIL-LGAHA 84 (274)
T ss_pred HHHHHHhhcCCCCEEEeCCCCCCchhhhHHHHHHHHHHhcCCCeeeecccCCCCH------------HHHHHHH-HHHHH
Confidence 44455555555555554432 23444556677777777776655443322 3344443 34567
Q ss_pred cCCCeEEEEEeC
Q 027739 149 FGLKRALVVHSE 160 (219)
Q Consensus 149 lG~~~alvv~Ge 160 (219)
+|+++.++++||
T Consensus 85 ~Gi~~iL~l~GD 96 (274)
T cd00537 85 LGIRNILALRGD 96 (274)
T ss_pred CCCCeEEEeCCC
Confidence 799999999984
No 49
>PRK12350 citrate synthase 2; Provisional
Probab=33.03 E-value=56 Score=30.47 Aligned_cols=78 Identities=24% Similarity=0.339 Sum_probs=41.5
Q ss_pred CCcchHHHHHHHHcCCCcE---------EeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHH----HHHHc----Ceeee
Q 027739 27 TVNISTGASILAAACGAKV---------AKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR----CVDEA----GIGFM 89 (219)
Q Consensus 27 t~NiSt~aA~vlAa~Gv~V---------~kHG~~~~ssk~Gs~dvLeaLGi~~~~~~~~a~~----~L~~~----gi~fl 89 (219)
.+|.||.++.++|+.|... ++.|..--.......+.|++.| +++++++ .+++. ||+.=
T Consensus 169 g~naSTfaaRv~aSt~adlysav~agi~aL~GplHGGA~e~v~~ml~ei~-----~~~~~~~~v~~~l~~~~ri~GFGHr 243 (353)
T PRK12350 169 GMNASTFTARVIASTGADVAAALSGAIGALSGPLHGGAPARVLPMLDAVE-----RTGDARGWVKGALDRGERLMGFGHR 243 (353)
T ss_pred CCCcchHHHHHHhccCCcHHHHHHHHHhhcCCCcccChHHHHHHHHHHhC-----ChhhHHHHHHHHHHCCCccccCCCC
Confidence 6899999999999988765 2222211112222455666665 2333433 44332 22221
Q ss_pred ecccccHHhhhhHHHHhhcC
Q 027739 90 MSTKYHPAMKFVRPVRKKLK 109 (219)
Q Consensus 90 ~a~~~~P~l~~l~~lR~~Lg 109 (219)
--...-|-...|..+=++++
T Consensus 244 vYk~~DPRa~~L~~~~~~l~ 263 (353)
T PRK12350 244 VYRAEDPRARVLRATAKRLG 263 (353)
T ss_pred CCCCCCCCHHHHHHHHHHhC
Confidence 12344566666666655665
No 50
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=32.89 E-value=1.5e+02 Score=25.33 Aligned_cols=77 Identities=14% Similarity=0.157 Sum_probs=52.3
Q ss_pred HHHHHHHHcCCCc-EEeeCCCCCCCccc-----HHHHHHHcCCCCC-----CCHHHHHHHHHHcCe-eeeecccccHHhh
Q 027739 32 TGASILAAACGAK-VAKQGSRSSSSACG-----SADVLEALGVVID-----LDPEGVRRCVDEAGI-GFMMSTKYHPAMK 99 (219)
Q Consensus 32 t~aA~vlAa~Gv~-V~kHG~~~~ssk~G-----s~dvLeaLGi~~~-----~~~~~a~~~L~~~gi-~fl~a~~~~P~l~ 99 (219)
...+..+.+.|+. +..||-.....+.| ...+.+..++|+- .+++++.+.++..|+ +.+-...++..-.
T Consensus 152 ~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~~ 231 (243)
T cd04731 152 VEWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEY 231 (243)
T ss_pred HHHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCCC
Confidence 3455667788988 77888544333333 4667777788863 578999999999888 6666666666544
Q ss_pred hhHHHHhhc
Q 027739 100 FVRPVRKKL 108 (219)
Q Consensus 100 ~l~~lR~~L 108 (219)
.+..+++.+
T Consensus 232 ~~~~~~~~~ 240 (243)
T cd04731 232 TIAELKEYL 240 (243)
T ss_pred CHHHHHHHH
Confidence 566665544
No 51
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=32.83 E-value=1.6e+02 Score=26.12 Aligned_cols=121 Identities=12% Similarity=0.211 Sum_probs=85.1
Q ss_pred CCCCCHHHHHHHHHHcCeeeeec----ccccHHhhhhHHHHhhcCCC--------chhHhHhhccCCCCCCeEEEeecCh
Q 027739 69 VIDLDPEGVRRCVDEAGIGFMMS----TKYHPAMKFVRPVRKKLKVK--------TVFNILGPMLNPACVPFAVVGVYNE 136 (219)
Q Consensus 69 ~~~~~~~~a~~~L~~~gi~fl~a----~~~~P~l~~l~~lR~~Lg~R--------T~fNtl~pLlNP~~~~~~v~Gv~h~ 136 (219)
....++.+.++..++.|.+-+.. ..|.-.+..+..+|+...++ ....+.+--..-+.+=..+..+..+
T Consensus 58 ~~~~d~~~~A~~y~~~GA~aISVlTe~~~F~Gs~~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L~~ 137 (247)
T PRK13957 58 RADYHPVQIAKTYETLGASAISVLTDQSYFGGSLEDLKSVSSELKIPVLRKDFILDEIQIREARAFGASAILLIVRILTP 137 (247)
T ss_pred CCCCCHHHHHHHHHHCCCcEEEEEcCCCcCCCCHHHHHHHHHhcCCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhCCH
Confidence 33468899999999998877753 35778888899999876543 3344444444344444556677777
Q ss_pred hhHHHHHHHHHHcCCCeEEEEEeCCccccCCCCceEEEEEeCCcEEEEEeccC
Q 027739 137 NLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPC 189 (219)
Q Consensus 137 ~~~~~~a~~l~~lG~~~alvv~GeG~dEls~~~~t~i~~v~~g~i~~~~l~P~ 189 (219)
+-...+.+.+..+|.+-.+=||.+-.-|........+..++|.....+++++.
T Consensus 138 ~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~vd~~ 190 (247)
T PRK13957 138 SQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQIHQN 190 (247)
T ss_pred HHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHH
Confidence 77888888999999976667886322233344455688999999999999874
No 52
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=32.76 E-value=1.3e+02 Score=26.94 Aligned_cols=105 Identities=14% Similarity=0.108 Sum_probs=51.3
Q ss_pred eeEeccCCCCCCCCcchHHHHH-HHHcCC-CcEEeeCCCCCCCcccHHHHHHH------cCCCCCCCHHHHHHHHHHcCe
Q 027739 15 VDIVGTGGDGANTVNISTGASI-LAAACG-AKVAKQGSRSSSSACGSADVLEA------LGVVIDLDPEGVRRCVDEAGI 86 (219)
Q Consensus 15 ~Di~GtggDg~~t~NiSt~aA~-vlAa~G-v~V~kHG~~~~ssk~Gs~dvLea------LGi~~~~~~~~a~~~L~~~gi 86 (219)
+|++|.-.++.+.+ ..-.-++ .+.+.| +++..|.++..++ .-..+.++. -|+.+..+++.. +.+.+.||
T Consensus 139 ~Dl~g~E~~~~~~~-~~f~~~~~~ar~~g~l~~t~HaGE~~~~-~~v~~~~~~~~~RIgHg~~~~~~p~~~-~~l~~~~i 215 (305)
T cd00443 139 IDLVGDESKGENPL-RDFYSYYEYARRLGLLGLTLHCGETGNR-EELLQALLLLPDRIGHGIFLLKHPELI-YLVKLRNI 215 (305)
T ss_pred EEcCCCCCCCCCCH-HHHHHHHHHHHHcCCcceEEeecCCCCh-HHHHHHHHhccceeeceEecCCCHHHH-HHHHHcCC
Confidence 67777444432211 1112233 344569 9999999986222 123444442 134444555554 45666666
Q ss_pred eeeecccccHHh--------hhhHHHHhhcCCCchhHhHhhccCC
Q 027739 87 GFMMSTKYHPAM--------KFVRPVRKKLKVKTVFNILGPMLNP 123 (219)
Q Consensus 87 ~fl~a~~~~P~l--------~~l~~lR~~Lg~RT~fNtl~pLlNP 123 (219)
..-.-|.-.=.+ +.+..++ +.|++-.+||=.|.++.
T Consensus 216 ~ie~CP~SN~~~~~~~~~~~hP~~~~~-~~G~~v~i~TDd~~~~~ 259 (305)
T cd00443 216 PIEVCPTSNVVLGTVQSYEKHPFMRFF-KAGLPVSLSTDDPGIFG 259 (305)
T ss_pred EEEECcchhhhhcCCCChhhChHHHHH-HCCCeEEEeCCCCcccC
Confidence 655444221111 1123332 34777666665555443
No 53
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=32.59 E-value=1.6e+02 Score=25.08 Aligned_cols=80 Identities=21% Similarity=0.321 Sum_probs=48.4
Q ss_pred EEEeecChhhHHHHHHHHHHcCCC-eEEEEEeCCccccCCCCceEEEEEeC-----------------CcEEEEEeccCc
Q 027739 129 AVVGVYNENLVLKMANALQRFGLK-RALVVHSEGLDEMSPLGPGLILDVTQ-----------------EKIERFSFDPCK 190 (219)
Q Consensus 129 ~v~Gv~h~~~~~~~a~~l~~lG~~-~alvv~GeG~dEls~~~~t~i~~v~~-----------------g~i~~~~l~P~d 190 (219)
.+-+=-+++-++...+.++..|.. +.-+.-|+|.+.+.+........+.+ .....+.+.|.
T Consensus 24 ~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~lI~~ILe~~~~~~~~~~~lILqP~- 102 (205)
T PF04816_consen 24 AIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGELIIEILEAGPEKLSSAKRLILQPN- 102 (205)
T ss_dssp EEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HHHHHHHHHHTGGGGTT--EEEEEES-
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHHHHHHHHHhhHHHhccCCeEEEeCC-
Confidence 344444677777778888888854 44455579998888765222222211 23578999997
Q ss_pred chhhhHHHHHhhcceeeEE
Q 027739 191 DLVTDLFYFLFINSFLIVS 209 (219)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~ 209 (219)
.-..+|=+||.=|+|-|+.
T Consensus 103 ~~~~~LR~~L~~~gf~I~~ 121 (205)
T PF04816_consen 103 THAYELRRWLYENGFEIID 121 (205)
T ss_dssp S-HHHHHHHHHHTTEEEEE
T ss_pred CChHHHHHHHHHCCCEEEE
Confidence 6667788999999999874
No 54
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=32.57 E-value=4.2e+02 Score=25.68 Aligned_cols=159 Identities=9% Similarity=0.097 Sum_probs=85.3
Q ss_pred CceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcccHHH----HHHHcCCCC--CCCHHHHHHHHHH---
Q 027739 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSAD----VLEALGVVI--DLDPEGVRRCVDE--- 83 (219)
Q Consensus 13 ~~~Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~d----vLeaLGi~~--~~~~~~a~~~L~~--- 83 (219)
..+-++|.+|-|+.|+=...+. -++..|.+|..--.+ +-|.|+.+ .-+.+|+++ ..+++...+.++.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~--~L~~~GkkVglI~aD--t~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAW--QFHGKKKTVGFITTD--HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHH--HHHHcCCcEEEEecC--CcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 4677999999898754333332 234668888764433 44555433 334578886 3678888777743
Q ss_pred ---cCeeeeecccccHH-hhhhHHHHhhcCCCchhHhHhhccCCCCCCeEEEee-cChhhHHHHHHHHHHcCCCeEEEEE
Q 027739 84 ---AGIGFMMSTKYHPA-MKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGV-YNENLVLKMANALQRFGLKRALVVH 158 (219)
Q Consensus 84 ---~gi~fl~a~~~~P~-l~~l~~lR~~Lg~RT~fNtl~pLlNP~~~~~~v~Gv-~h~~~~~~~a~~l~~lG~~~alvv~ 158 (219)
..+.+++.+--.+. ...+..+++.++.. .|- ..+.++.. ....-....++.+..++.++.++=|
T Consensus 318 ~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~----------~Pd-evlLVLsATtk~~d~~~i~~~F~~~~idglI~TK 386 (436)
T PRK11889 318 EARVDYILIDTAGKNYRASETVEEMIETMGQV----------EPD-YICLTLSASMKSKDMIEIITNFKDIHIDGIVFTK 386 (436)
T ss_pred ccCCCEEEEeCccccCcCHHHHHHHHHHHhhc----------CCC-eEEEEECCccChHHHHHHHHHhcCCCCCEEEEEc
Confidence 36788887755542 22344444333321 232 22444543 3333445566677778886555555
Q ss_pred eC----CccccCCCC--ceEEEEEeCCcEEEEEe
Q 027739 159 SE----GLDEMSPLG--PGLILDVTQEKIERFSF 186 (219)
Q Consensus 159 Ge----G~dEls~~~--~t~i~~v~~g~i~~~~l 186 (219)
=| ++.=++... ..-|.-+.+|+-....|
T Consensus 387 LDET~k~G~iLni~~~~~lPIsyit~GQ~VPeDI 420 (436)
T PRK11889 387 FDETASSGELLKIPAVSSAPIVLMTDGQDVKKNI 420 (436)
T ss_pred ccCCCCccHHHHHHHHHCcCEEEEeCCCCCCcch
Confidence 22 222122111 23355567776443333
No 55
>PHA00649 hypothetical protein
Probab=32.52 E-value=59 Score=23.73 Aligned_cols=36 Identities=33% Similarity=0.563 Sum_probs=28.3
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHcCeeeeecccccHHhhhhHHHHhhcC
Q 027739 59 SADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLK 109 (219)
Q Consensus 59 s~dvLeaLGi~~~~~~~~a~~~L~~~gi~fl~a~~~~P~l~~l~~lR~~Lg 109 (219)
.+++|..||++++ .|+++ +.|-.-|..++.+|+.+.
T Consensus 19 V~~~~~~LGVD~~-~P~~V--------------EEFr~D~~~~Rr~RKA~D 54 (83)
T PHA00649 19 VKKVFAILGVDVD-VPEQV--------------EEFREDLRFGRRMRKAAD 54 (83)
T ss_pred HHHHHHHHcCCCC-CHHHH--------------HHHHHHHHHHHHHHHHhh
Confidence 5889999999997 57777 445566788888888764
No 56
>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase. Sequences scoring between the trusted and noise cutoffs include fragmentary and aberrant sequences in which generally well-conserved motifs are missing or altererd, but no example of a protein known to have a different function.
Probab=31.84 E-value=82 Score=28.87 Aligned_cols=120 Identities=18% Similarity=0.228 Sum_probs=60.4
Q ss_pred ceeEeccC-CCCCC-CC--cchHHHHHHHHcC--CCcEEeeCCCCCCCcccH--HHHHHHcCCCCCCCHHHHHHHHHHcC
Q 027739 14 AVDIVGTG-GDGAN-TV--NISTGASILAAAC--GAKVAKQGSRSSSSACGS--ADVLEALGVVIDLDPEGVRRCVDEAG 85 (219)
Q Consensus 14 ~~Di~Gtg-gDg~~-t~--NiSt~aA~vlAa~--Gv~V~kHG~~~~ssk~Gs--~dvLeaLGi~~~~~~~~a~~~L~~~g 85 (219)
.+.|-|.+ +-+.. ++ .+|.++-+++|++ |-.+..+|....+.+... .++|+++|+++.... .+
T Consensus 204 ~i~I~g~~~l~~~~~~i~~D~ssa~~ll~aa~l~~g~i~i~~~~~~~~~~~~~~~~~L~~~Ga~i~~~~---------~~ 274 (409)
T TIGR01356 204 KIVVPGGQKYGPQGYDVPGDYSSAAFFLAAAAITGGRVTLENLGINPTQGDKAIIIVLEEMGADIEVEE---------DD 274 (409)
T ss_pred EEEECCCCccCCCeeECCCCHHHHHHHHHHHHhcCCEEEECCCCCCCCCCcHHHHHHHHHcCCeEEEeC---------Ce
Confidence 45554422 43333 33 4555544444442 227888876554455553 789999999986421 12
Q ss_pred eeeeecccccHHhhhhHHHHhhcCCCc-h---hHhHhhccCCCCCCeEEEeecChh-----hHHHHHHHHHHcCCC
Q 027739 86 IGFMMSTKYHPAMKFVRPVRKKLKVKT-V---FNILGPMLNPACVPFAVVGVYNEN-----LVLKMANALQRFGLK 152 (219)
Q Consensus 86 i~fl~a~~~~P~l~~l~~lR~~Lg~RT-~---fNtl~pLlNP~~~~~~v~Gv~h~~-----~~~~~a~~l~~lG~~ 152 (219)
|..-..+.+.| ..-.+.-.+ . +-.++-+ ++....+.|+.|-. -...+.+.|+++|.+
T Consensus 275 i~v~~~~~l~~-------~~~~~~d~~d~~~~l~~~aa~---a~g~~~i~~~~~~~~~e~dr~~~~~~~L~~~G~~ 340 (409)
T TIGR01356 275 LIVEGASGLKG-------IKIDMDDMIDELPTLAVLAAF---AEGVTRITGAEELRVKESDRIAAIAEELRKLGVD 340 (409)
T ss_pred EEEEecCCCcc-------EEEECCCChhHHHHHHHHHHh---CCCCEEEEChhHhhhcccHHHHHHHHHHHHcCCE
Confidence 33221122221 100111111 1 1112211 24568899988843 335578889999973
No 57
>COG0766 MurA UDP-N-acetylglucosamine enolpyruvyl transferase [Cell envelope biogenesis, outer membrane]
Probab=31.55 E-value=86 Score=30.07 Aligned_cols=132 Identities=21% Similarity=0.167 Sum_probs=89.0
Q ss_pred CCCCCCCCcchHH-HHHHHHcCC-CcEEeeCCCCCCCccc--HHHHHHHcCCCCCCCHHHHHHHHHHcCeeeeecccccH
Q 027739 21 GGDGANTVNISTG-ASILAAACG-AKVAKQGSRSSSSACG--SADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHP 96 (219)
Q Consensus 21 ggDg~~t~NiSt~-aA~vlAa~G-v~V~kHG~~~~ssk~G--s~dvLeaLGi~~~~~~~~a~~~L~~~gi~fl~a~~~~P 96 (219)
+|+--++.-.|-. ..-+||++| .+|.+-|+.++.+|-= .-..||+||..+.. ++|..+..++.-
T Consensus 85 py~~v~kmRASi~vlGplLaR~g~a~V~LPGGCaIG~RPvDlHl~gleaLGA~i~~----------e~g~i~a~a~~~-- 152 (421)
T COG0766 85 PYELVRKMRASILVLGPLLARFGKAKVSLPGGCAIGARPVDLHLKGLEALGAEIEI----------EHGYIEASAPKG-- 152 (421)
T ss_pred CHHHHHHHHhHHHHHHHHHhhcCceEECCCCCccCCCCchhHHHHHHHHcCCEEEE----------cCCEEEEEccCC--
Confidence 5555555555554 346778877 5777999999988743 68899999999874 367777766653
Q ss_pred HhhhhHHHHhhcCCCchhHhHhhccCCCCC--CeEEEeecChhhHHHHHHHHHHcCCCeEEEEEeCCccccCCCCceE
Q 027739 97 AMKFVRPVRKKLKVKTVFNILGPMLNPACV--PFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGL 172 (219)
Q Consensus 97 ~l~~l~~lR~~Lg~RT~fNtl~pLlNP~~~--~~~v~Gv~h~~~~~~~a~~l~~lG~~~alvv~GeG~dEls~~~~t~ 172 (219)
|..-|=.|-+.|.-.|---|+--..+ ...+--....+-.--+++.|..+|.+ ++|.|.+.+.+.|-.+
T Consensus 153 ----L~G~~I~ld~~SVGATenimmAA~lA~G~TvIeNAA~EPEIvDLa~~Ln~MGA~----I~GaGT~~I~I~GV~~ 222 (421)
T COG0766 153 ----LKGAHIYLDKVSVGATENIMMAAVLAEGTTVIENAAREPEIVDLANFLNKMGAK----IEGAGTSTITIEGVEK 222 (421)
T ss_pred ----ccceEEEecCCcccHHHHHHHHHHhcCCcEEEeecccCchHHHHHHHHHHcCCe----eEEcCCCeEEEecccc
Confidence 44555566777777666666544333 35566666666666778999999975 5666666665555443
No 58
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=31.35 E-value=66 Score=28.24 Aligned_cols=37 Identities=30% Similarity=0.408 Sum_probs=26.2
Q ss_pred eeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHHHHHHcC
Q 027739 47 KQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAG 85 (219)
Q Consensus 47 kHG~~~~ssk~Gs~dvLeaLGi~~~~~~~~a~~~L~~~g 85 (219)
+-|+- .|+||..+++|+++|+++- +.+.+++..-+.|
T Consensus 6 LTGgi-atGKStVs~~f~~~G~~vI-DaD~vaR~vv~PG 42 (225)
T KOG3220|consen 6 LTGGI-ATGKSTVSQVFKALGIPVI-DADVVAREVVEPG 42 (225)
T ss_pred eeccc-ccChHHHHHHHHHcCCcEe-cHHHHHHHHhcCC
Confidence 44443 3678899999999999984 5666666555444
No 59
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=31.13 E-value=2.1e+02 Score=23.98 Aligned_cols=150 Identities=23% Similarity=0.328 Sum_probs=81.8
Q ss_pred ceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcccHH----HHHHHcCCCCC-----CCHHH-HHHHHH-
Q 027739 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSA----DVLEALGVVID-----LDPEG-VRRCVD- 82 (219)
Q Consensus 14 ~~Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~----dvLeaLGi~~~-----~~~~~-a~~~L~- 82 (219)
.+=+||..|-|+.|- +.-+|+..... |.+|.+--.+ +-|.|.. ..-+.+|+++. .++.+ +.+.++
T Consensus 3 vi~lvGptGvGKTTt-~aKLAa~~~~~-~~~v~lis~D--~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 3 VIALVGPTGVGKTTT-IAKLAARLKLK-GKKVALISAD--TYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHT-T--EEEEEES--TSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCchHhH-HHHHHHHHhhc-cccceeecCC--CCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 455789988887532 22223333333 8888877643 4677753 44578898852 23433 334444
Q ss_pred --H--cCeeeeecccccHHhhh-hHHHHhhcCCCchhHhHhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCCCeEEEE
Q 027739 83 --E--AGIGFMMSTKYHPAMKF-VRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVV 157 (219)
Q Consensus 83 --~--~gi~fl~a~~~~P~l~~-l~~lR~~Lg~RT~fNtl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lG~~~alvv 157 (219)
+ ..+.+++.+-.+|.-.. +..+++ +.+.+ +|...-..+-.-.+.+-.+...+..+.++.++.++=
T Consensus 79 ~~~~~~D~vlIDT~Gr~~~d~~~~~el~~------~~~~~----~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlT 148 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAGRSPRDEELLEELKK------LLEAL----NPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILT 148 (196)
T ss_dssp HHHTTSSEEEEEE-SSSSTHHHHHHHHHH------HHHHH----SSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEE
T ss_pred HhhcCCCEEEEecCCcchhhHHHHHHHHH------Hhhhc----CCccceEEEecccChHHHHHHHHHhhcccCceEEEE
Confidence 3 45899999987775432 333332 22222 554444445555566666667777777888755555
Q ss_pred EeCCccccCCCC---------ceEEEEEeCCc
Q 027739 158 HSEGLDEMSPLG---------PGLILDVTQEK 180 (219)
Q Consensus 158 ~GeG~dEls~~~---------~t~i~~v~~g~ 180 (219)
| .||....| .--|.-+.+|+
T Consensus 149 K---lDet~~~G~~l~~~~~~~~Pi~~it~Gq 177 (196)
T PF00448_consen 149 K---LDETARLGALLSLAYESGLPISYITTGQ 177 (196)
T ss_dssp S---TTSSSTTHHHHHHHHHHTSEEEEEESSS
T ss_pred e---ecCCCCcccceeHHHHhCCCeEEEECCC
Confidence 5 44433222 34456667765
No 60
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=30.81 E-value=38 Score=25.78 Aligned_cols=53 Identities=17% Similarity=0.184 Sum_probs=34.4
Q ss_pred CCCCCCCHHHHHHHHHHcCeeeeeccc--ccHHhhhhHHHHhhcC--CCchhHhHhh
Q 027739 67 GVVIDLDPEGVRRCVDEAGIGFMMSTK--YHPAMKFVRPVRKKLK--VKTVFNILGP 119 (219)
Q Consensus 67 Gi~~~~~~~~a~~~L~~~gi~fl~a~~--~~P~l~~l~~lR~~Lg--~RT~fNtl~p 119 (219)
|.+-|.+-..|.+.|+++|+.|-.... -.+....+..+-+.+| ...++|+=++
T Consensus 5 ~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~ 61 (111)
T cd03036 5 EYPKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGK 61 (111)
T ss_pred ECCCCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCc
Confidence 445566667889999999988876543 3455556666666666 4455554443
No 61
>PRK14033 citrate synthase; Provisional
Probab=30.44 E-value=69 Score=30.04 Aligned_cols=19 Identities=16% Similarity=0.106 Sum_probs=17.0
Q ss_pred CCcchHHHHHHHHcCCCcE
Q 027739 27 TVNISTGASILAAACGAKV 45 (219)
Q Consensus 27 t~NiSt~aA~vlAa~Gv~V 45 (219)
.+|.||.++.++|+.|...
T Consensus 191 gln~StfaaRv~aSt~adl 209 (375)
T PRK14033 191 SFNASTFTARVITSTLSDI 209 (375)
T ss_pred CCCcHHHHHHHHhccCCCH
Confidence 5899999999999998876
No 62
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=29.71 E-value=62 Score=24.15 Aligned_cols=63 Identities=14% Similarity=0.141 Sum_probs=40.4
Q ss_pred eeCCCCCCCcccHHHHHHHcCCCC-------CCCHHHHHHHHHHcCeeeeecccccHHhhhhHHHHhhcC
Q 027739 47 KQGSRSSSSACGSADVLEALGVVI-------DLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLK 109 (219)
Q Consensus 47 kHG~~~~ssk~Gs~dvLeaLGi~~-------~~~~~~a~~~L~~~gi~fl~a~~~~P~l~~l~~lR~~Lg 109 (219)
.+|+...++..-.-+-|+..|+++ ..++++..+.|++.||..=.-.-+.|......-+++..+
T Consensus 10 ~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts~~~~~~~l~~~~~ 79 (101)
T PF13344_consen 10 YNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITSGMAAAEYLKEHKG 79 (101)
T ss_dssp EETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEHHHHHHHHHHHHTT
T ss_pred EeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEChHHHHHHHHHhcCC
Confidence 456655554333444445558754 367789999999999997777788888877777777443
No 63
>PRK01184 hypothetical protein; Provisional
Probab=29.53 E-value=2.3e+02 Score=22.64 Aligned_cols=19 Identities=16% Similarity=0.127 Sum_probs=9.2
Q ss_pred CeEEEeecChhhHHHHHHH
Q 027739 127 PFAVVGVYNENLVLKMANA 145 (219)
Q Consensus 127 ~~~v~Gv~h~~~~~~~a~~ 145 (219)
...+-|+.++...+.+.+.
T Consensus 82 ~vvidg~r~~~e~~~~~~~ 100 (184)
T PRK01184 82 VVVIDGVRGDAEVEYFRKE 100 (184)
T ss_pred cEEEeCCCCHHHHHHHHHh
Confidence 3455565554444444443
No 64
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=29.46 E-value=1.8e+02 Score=26.35 Aligned_cols=65 Identities=22% Similarity=0.233 Sum_probs=46.2
Q ss_pred EeccCCCCCCCCcchHHHHHHHHcCCCcEEe----eCCCCCCC--------cccHHHHHHHcCCCCCCCHHHHHHHHHH
Q 027739 17 IVGTGGDGANTVNISTGASILAAACGAKVAK----QGSRSSSS--------ACGSADVLEALGVVIDLDPEGVRRCVDE 83 (219)
Q Consensus 17 i~GtggDg~~t~NiSt~aA~vlAa~Gv~V~k----HG~~~~ss--------k~Gs~dvLeaLGi~~~~~~~~a~~~L~~ 83 (219)
|.|++|.|+.|+-.+- +-++++.|-+|.. -+|+.++= -.++.|+.+.+|+-.+-..--+.+.|+.
T Consensus 7 VIGPPgSGKsTYc~g~--~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l~~ 83 (290)
T KOG1533|consen 7 VIGPPGSGKSTYCNGM--SQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEYLEA 83 (290)
T ss_pred EEcCCCCCccchhhhH--HHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHHHHh
Confidence 6799999999886543 3567777876653 67777762 2458999999999877666555555543
No 65
>cd01555 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine = phosphate + UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine. This enzyme is of interest as a potential target for anti-bacterial agents. The only other known enolpyruvyl transferase is the related 5-enolpyruvylshikimate-3-phosphate synthase.
Probab=29.14 E-value=39 Score=30.85 Aligned_cols=96 Identities=22% Similarity=0.230 Sum_probs=51.7
Q ss_pred CCCcEEeeCCCCCCCcc--cHHHHHHHcCCCCCCCHHHHHHHHHHcCeeeeecccccHHhhhhHHHHhhcCCCchhHhHh
Q 027739 41 CGAKVAKQGSRSSSSAC--GSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILG 118 (219)
Q Consensus 41 ~Gv~V~kHG~~~~ssk~--Gs~dvLeaLGi~~~~~~~~a~~~L~~~gi~fl~a~~~~P~l~~l~~lR~~Lg~RT~fNtl~ 118 (219)
.++.+..+|...+.++. ...++|+++|+++..+. + +++.. .+ ..+.+..-.+-..+...+..
T Consensus 96 ~~~~~~~~g~~~l~~rp~~~~~~~L~~lG~~i~~~~----------~--~~~v~--~~--~~~~~~~~~i~~~~~~~~~~ 159 (400)
T cd01555 96 GEARVSLPGGCAIGARPVDLHLKGLEALGAKIEIED----------G--YVEAK--AA--GRLKGARIYLDFPSVGATEN 159 (400)
T ss_pred CceEEEEcCCCccccCCHHHHHHHHHHCCCEEEEeC----------C--EEEEe--cC--CCccceEEECCCCCHHHHHH
Confidence 34788888977665543 37899999999885321 1 11111 01 11112111222222222211
Q ss_pred hccC-C-CCCCeEEEeecChhhHHHHHHHHHHcCCC
Q 027739 119 PMLN-P-ACVPFAVVGVYNENLVLKMANALQRFGLK 152 (219)
Q Consensus 119 pLlN-P-~~~~~~v~Gv~h~~~~~~~a~~l~~lG~~ 152 (219)
.|+- + +.....+.+..++++...+.+.|+++|.+
T Consensus 160 ll~aa~~~~g~~~i~~~~~~~~i~~~~~~L~~~G~~ 195 (400)
T cd01555 160 IMMAAVLAEGTTVIENAAREPEIVDLANFLNKMGAK 195 (400)
T ss_pred HHHHHHhCCCeEEEecccCCccHHHHHHHHHHCCCE
Confidence 1111 1 12335566776777888899999999974
No 66
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=28.97 E-value=1.6e+02 Score=21.56 Aligned_cols=84 Identities=14% Similarity=0.131 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHcCeeeeecccccHHhhhhHHHHhhcCCCchhHhHhhccCCCC--CCeEEEeecChhhHHHHHHHHHH
Q 027739 71 DLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPAC--VPFAVVGVYNENLVLKMANALQR 148 (219)
Q Consensus 71 ~~~~~~a~~~L~~~gi~fl~a~~~~P~l~~l~~lR~~Lg~RT~fNtl~pLlNP~~--~~~~v~Gv~h~~~~~~~a~~l~~ 148 (219)
..+++++.+.+++.+..++++..- .-..-..+...+-+ +...+...+++.. .+..++.. +-......+..|+.
T Consensus 6 ~is~~el~~~l~~~~~~ivDvR~~--~e~~~ghi~gA~~i--p~~~l~~~~~~~~~~~~ivv~c~-~g~~s~~a~~~L~~ 80 (108)
T PRK00162 6 CINVEQAHQKLQEGGAVLVDIRDP--QSFAMGHAPGAFHL--TNDSLGAFMRQADFDTPVMVMCY-HGNSSQGAAQYLLQ 80 (108)
T ss_pred ccCHHHHHHHHHcCCCEEEEcCCH--HHHhcCCCCCCeEC--CHHHHHHHHHhcCCCCCEEEEeC-CCCCHHHHHHHHHH
Confidence 357888888887777767766521 11111111111111 1122323333332 33444433 33445667778889
Q ss_pred cCCCeEEEEEe
Q 027739 149 FGLKRALVVHS 159 (219)
Q Consensus 149 lG~~~alvv~G 159 (219)
.|++++.++.|
T Consensus 81 ~G~~~v~~l~G 91 (108)
T PRK00162 81 QGFDVVYSIDG 91 (108)
T ss_pred CCchheEEecC
Confidence 99988777764
No 67
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=28.91 E-value=75 Score=24.28 Aligned_cols=54 Identities=11% Similarity=0.059 Sum_probs=40.2
Q ss_pred cCCCCCCCHHHHHHHHHHcCeeeeecc--cccHHhhhhHHHHhhcCCCc---hhHhHhh
Q 027739 66 LGVVIDLDPEGVRRCVDEAGIGFMMST--KYHPAMKFVRPVRKKLKVKT---VFNILGP 119 (219)
Q Consensus 66 LGi~~~~~~~~a~~~L~~~gi~fl~a~--~~~P~l~~l~~lR~~Lg~RT---~fNtl~p 119 (219)
.|.+-|.+-.+|.+.|+++|+.|-... .--|.-..+..+-+.+|+.+ ++|+=++
T Consensus 4 y~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~~~g~~~~~~lin~~~~ 62 (114)
T TIGR00014 4 YHNPRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFAKLGLTVAREMIRTKEA 62 (114)
T ss_pred EECCCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHHHcCCchHHHHHhcCCc
Confidence 366778888999999999998866554 55677777888888888754 5555444
No 68
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=28.32 E-value=3.6e+02 Score=23.09 Aligned_cols=78 Identities=15% Similarity=0.153 Sum_probs=55.7
Q ss_pred CCCHHHHHHHHHHcCeeeeecccccH------HhhhhHHHHhhc--------CCCchhHhHhhccCCCCCCeEEEeecCh
Q 027739 71 DLDPEGVRRCVDEAGIGFMMSTKYHP------AMKFVRPVRKKL--------KVKTVFNILGPMLNPACVPFAVVGVYNE 136 (219)
Q Consensus 71 ~~~~~~a~~~L~~~gi~fl~a~~~~P------~l~~l~~lR~~L--------g~RT~fNtl~pLlNP~~~~~~v~Gv~h~ 136 (219)
..+|.+.++.+++.|.-+++.-++.. .+.-+..+.++. |+|| +-.+..+++ +++.+.++|..--
T Consensus 34 ~~dp~~~a~~~~~~g~~~l~i~DLd~~~~~~~n~~~i~~i~~~~~~~v~vgGGir~-~edv~~~l~-~Ga~~viigt~~~ 111 (233)
T cd04723 34 TSDPLDVARAYKELGFRGLYIADLDAIMGRGDNDEAIRELAAAWPLGLWVDGGIRS-LENAQEWLK-RGASRVIVGTETL 111 (233)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEeCccccCCCccHHHHHHHHHhCCCCEEEecCcCC-HHHHHHHHH-cCCCeEEEcceec
Confidence 45899999999999998888766543 344555666543 6777 445556665 4677778888776
Q ss_pred hhHHHHHHHHHHcCC
Q 027739 137 NLVLKMANALQRFGL 151 (219)
Q Consensus 137 ~~~~~~a~~l~~lG~ 151 (219)
.- +.+.+++++.|.
T Consensus 112 ~~-~~~~~~~~~~~~ 125 (233)
T cd04723 112 PS-DDDEDRLAALGE 125 (233)
T ss_pred cc-hHHHHHHHhcCC
Confidence 66 888899988875
No 69
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=28.26 E-value=5.5e+02 Score=24.75 Aligned_cols=132 Identities=17% Similarity=0.193 Sum_probs=83.0
Q ss_pred ceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCC---ccc-------------HHHHHHHcCCCCCC----C
Q 027739 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSS---ACG-------------SADVLEALGVVIDL----D 73 (219)
Q Consensus 14 ~~Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~~ss---k~G-------------s~dvLeaLGi~~~~----~ 73 (219)
.+-++|.|-+|. ++|.-|+++|+.|..+++.+... +.| -.+.|++.|+.+.. .
T Consensus 125 ~VaviGaGPAGl-------~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG 197 (457)
T COG0493 125 KVAVIGAGPAGL-------AAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVG 197 (457)
T ss_pred EEEEECCCchHh-------hhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceEC
Confidence 455666555543 46899999999999999887543 233 25778888875431 1
Q ss_pred -HHHHHHHHHHcCeeeee---------------cccccHHhhhhHHHHhhcCCCchhHhHhhccCCCCCCeEEEeecChh
Q 027739 74 -PEGVRRCVDEAGIGFMM---------------STKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNEN 137 (219)
Q Consensus 74 -~~~a~~~L~~~gi~fl~---------------a~~~~P~l~~l~~lR~~Lg~RT~fNtl~pLlNP~~~~~~v~Gv~h~~ 137 (219)
.-++++.+++.-..|+. ++..+.++..|..++++...-.. . .+...+.+-+..|+|.-.-+
T Consensus 198 ~~it~~~L~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~-~--~~~~~~~gk~vvVIGgG~Ta 274 (457)
T COG0493 198 RDITLEELLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFA-E--DRTPPAKGKRVVVIGGGDTA 274 (457)
T ss_pred CcCCHHHHHHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccc-c--ccCCCCCCCeEEEECCCCCH
Confidence 33455555555555553 44677888888888754322111 0 22222334668899998855
Q ss_pred hHHHHHHHHHHcCCCeEEEE
Q 027739 138 LVLKMANALQRFGLKRALVV 157 (219)
Q Consensus 138 ~~~~~a~~l~~lG~~~alvv 157 (219)
..=. .....+|.++..++
T Consensus 275 ~D~~--~t~~r~Ga~~v~~~ 292 (457)
T COG0493 275 MDCA--GTALRLGAKSVTCF 292 (457)
T ss_pred HHHH--HHHhhcCCeEEEEe
Confidence 5443 66778888888777
No 70
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=27.91 E-value=34 Score=27.73 Aligned_cols=34 Identities=9% Similarity=0.067 Sum_probs=26.9
Q ss_pred HHHcCCCCCCCHHHHHHHHHHcCeeeeecccccH
Q 027739 63 LEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHP 96 (219)
Q Consensus 63 LeaLGi~~~~~~~~a~~~L~~~gi~fl~a~~~~P 96 (219)
++-++|+.+.+.+++++.+++.++.|++.|...+
T Consensus 66 ~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~ 99 (146)
T cd03008 66 LALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDE 99 (146)
T ss_pred EEEEEEECCCCHHHHHHHHHHCCCCceeecccch
Confidence 5567888888888999999999988877665543
No 71
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=27.90 E-value=3.1e+02 Score=23.77 Aligned_cols=80 Identities=10% Similarity=0.117 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHcCeeeeeccccc------HHhhhhHHHHh-hc-------CCCchhHhHhhccCCCCCCeEEEeecChh
Q 027739 72 LDPEGVRRCVDEAGIGFMMSTKYH------PAMKFVRPVRK-KL-------KVKTVFNILGPMLNPACVPFAVVGVYNEN 137 (219)
Q Consensus 72 ~~~~~a~~~L~~~gi~fl~a~~~~------P~l~~l~~lR~-~L-------g~RT~fNtl~pLlNP~~~~~~v~Gv~h~~ 137 (219)
.+|.+.++.+++.|.-.++.-++. +...-+..+++ .. |+||.=.. ..+++ .++.+.++|..--.
T Consensus 30 ~dP~~~a~~~~~~ga~~lhivDLd~a~~~~~n~~~i~~i~~~~~~~v~vGGGIrs~e~~-~~~l~-~Ga~kvvigt~a~~ 107 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRIHVVDLDAAEGVGNNEMYIKEISKIGFDWIQVGGGIRDIEKA-KRLLS-LDVNALVFSTIVFT 107 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcCCCcchHHHHHHHHhhCCCCEEEeCCcCCHHHH-HHHHH-CCCCEEEECchhhC
Confidence 488889999999888666654443 23444566665 23 88887554 55555 47888899976666
Q ss_pred hHHHHHHHHHHcCCCe
Q 027739 138 LVLKMANALQRFGLKR 153 (219)
Q Consensus 138 ~~~~~a~~l~~lG~~~ 153 (219)
-.+.+.++.+..|.++
T Consensus 108 ~p~~~~~~~~~~g~~~ 123 (232)
T PRK13586 108 NFNLFHDIVREIGSNR 123 (232)
T ss_pred CHHHHHHHHHHhCCCC
Confidence 6677788888887544
No 72
>PF04371 PAD_porph: Porphyromonas-type peptidyl-arginine deiminase; InterPro: IPR007466 Peptidyl-arginine deiminase (PAD) enzymes catalyse the deimination of the guanidino group from carboxy-terminal arginine residues of various peptides to produce ammonia. PAD from Porphyromonas gingivalis (Bacteroides gingivalis) (PPAD) appears to be evolutionarily unrelated to mammalian PAD (IPR004303 from INTERPRO), which is a metalloenzyme. PPAD is thought to belong to the same superfamily as aminotransferase and arginine deiminase, and to form an alpha/beta propeller structure. This family has previously been named PPADH (Porphyromonas peptidyl-arginine deiminase homologs) []. The predicted catalytic residues in PPAD (Q9RQJ2 from SWISSPROT) are Asp130, Asp187, His236, Asp238 and Cys351 []. These are absolutely conserved with the exception of Asp187 which is absent in two family members. PPAD is also able to catalyse the deimination of free L-arginine, but has primarily peptidyl-arginine specificity. It may have a FMN cofactor [].; PDB: 2Q3U_A 1VKP_A 3H7C_X 3H7K_A 2EWO_K 1ZBR_B 1XKN_A 2JER_B 3HVM_A 2CMU_A.
Probab=27.85 E-value=2.4e+02 Score=25.80 Aligned_cols=44 Identities=16% Similarity=0.124 Sum_probs=30.7
Q ss_pred CCCchhHhHhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCCCeEEEEE-e
Q 027739 109 KVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH-S 159 (219)
Q Consensus 109 g~RT~fNtl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lG~~~alvv~-G 159 (219)
|-.|++-|-.-++||-+.+. .+-.+.-++..+.||.++.+.+. |
T Consensus 146 G~Gtli~Te~~ll~~nRNp~-------~s~~eie~~L~~~lG~~kviwL~~g 190 (329)
T PF04371_consen 146 GEGTLITTESCLLNPNRNPG-------LSKAEIEAELKRYLGVEKVIWLPHG 190 (329)
T ss_dssp SSSEEEEEHHHHTSTTTSTT-------S-HHHHHHHHHHHHT-SEEEEESS-
T ss_pred CCceEEEEeeeEecCccCcc-------CCHHHHHHHHHHHhCCCEEEEecCC
Confidence 55688878888888876443 24556777777888999998888 6
No 73
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=27.82 E-value=3.4e+02 Score=24.65 Aligned_cols=60 Identities=13% Similarity=0.134 Sum_probs=44.3
Q ss_pred cccccHHhhhhHHHHhhcCCCchhHhHhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCCCe
Q 027739 91 STKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKR 153 (219)
Q Consensus 91 a~~~~P~l~~l~~lR~~Lg~RT~fNtl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lG~~~ 153 (219)
-+..---...+..+| ++|+. .=++++-+.|.....-|.-+.+|+-.+.+.+.+..+|++.
T Consensus 218 GETeee~~etl~~Lr-elg~d--~v~igqYl~p~~~~~~v~~~~~p~~f~~~~~~a~~~gf~~ 277 (302)
T TIGR00510 218 GETNEEIKQTLKDLR-DHGVT--MVTLGQYLRPSRRHLPVKRYVSPEEFDYYRSVALEMGFLH 277 (302)
T ss_pred CCCHHHHHHHHHHHH-hcCCC--EEEeecccCCCCCCCccccCCCHHHHHHHHHHHHHcCChh
Confidence 344444444444554 34443 3467888999888899999999999999999999999963
No 74
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=27.36 E-value=1.1e+02 Score=27.92 Aligned_cols=40 Identities=18% Similarity=0.162 Sum_probs=28.5
Q ss_pred cchHHHHHHHHcCCCcEEeeCCC--C-C-CCc-----ccHHHHHHHcCC
Q 027739 29 NISTGASILAAACGAKVAKQGSR--S-S-SSA-----CGSADVLEALGV 68 (219)
Q Consensus 29 NiSt~aA~vlAa~Gv~V~kHG~~--~-~-ssk-----~Gs~dvLeaLGi 68 (219)
..-.++|+.|++.|++|.+---. . . .++ .++.++||.||+
T Consensus 12 ~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~ 60 (387)
T COG0654 12 PAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGL 60 (387)
T ss_pred HHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCC
Confidence 35678999999999999975543 1 1 112 127889999998
No 75
>PLN02645 phosphoglycolate phosphatase
Probab=27.16 E-value=1.2e+02 Score=27.09 Aligned_cols=72 Identities=14% Similarity=0.108 Sum_probs=47.3
Q ss_pred ceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCC-----CCHHHHHHHHHHcC
Q 027739 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID-----LDPEGVRRCVDEAG 85 (219)
Q Consensus 14 ~~Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLeaLGi~~~-----~~~~~a~~~L~~~g 85 (219)
.+|+-||=++|...++=..-+--.+.+.|.+++.=-|++..++.-..+-|+.||+++. .+...++..|++.+
T Consensus 32 ~~D~DGtl~~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~~I~ts~~~~~~~l~~~~ 108 (311)
T PLN02645 32 IFDCDGVIWKGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEEEIFSSSFAAAAYLKSIN 108 (311)
T ss_pred EEeCcCCeEeCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChhhEeehHHHHHHHHHhhc
Confidence 5899999888876554332233356778999998877775555555667789999764 23344555666543
No 76
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=27.13 E-value=54 Score=29.76 Aligned_cols=84 Identities=13% Similarity=0.154 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHcCeeeeecc-------------------cccHHhhhhHHHHhhcCCCchhHhHhhccCCCCCCeEEEee
Q 027739 73 DPEGVRRCVDEAGIGFMMST-------------------KYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGV 133 (219)
Q Consensus 73 ~~~~a~~~L~~~gi~fl~a~-------------------~~~P~l~~l~~lR~~Lg~RT~fNtl~pLlNP~~~~~~v~Gv 133 (219)
+...+.+...++||.|+=.+ .+.+.+..+....++.|+|..+| ...++|++.++-.+.=-
T Consensus 49 ~l~~~l~~~~~~~I~~~R~sS~l~P~~~h~~~~~w~~~~~~~~~~~~~g~~~~~~~irls~H-p~y~inL~S~~~ev~e~ 127 (303)
T PRK02308 49 NLLRILKYNIAHGIGLFRLSSSLIPLATHPELEGWDYIEPFKEELREIGEFIKEHNIRLSFH-PDQFVVLNSPKPEVVEN 127 (303)
T ss_pred HHHHHHHHHHHCCCCEEEcccCcCCCCCChhhcccCCCCCCHHHHHHHHHHHHHcCCCeecc-ChhhhcCCCCCHHHHHH
Confidence 44555555667888776322 22235667778888999999999 78999998764332221
Q ss_pred cChhhHHHHHHHHHHcCCC--eEEEEE
Q 027739 134 YNENLVLKMANALQRFGLK--RALVVH 158 (219)
Q Consensus 134 ~h~~~~~~~a~~l~~lG~~--~alvv~ 158 (219)
. -..+..+++.+..+|.+ ..+|+|
T Consensus 128 S-i~~L~~~~~~~~~lG~~~~~~vViH 153 (303)
T PRK02308 128 S-IKDLEYHAKLLDLMGIDDSSKINIH 153 (303)
T ss_pred H-HHHHHHHHHHHHHCCCCCCCEEEEC
Confidence 1 34566678888899985 389999
No 77
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=26.74 E-value=1.1e+02 Score=26.91 Aligned_cols=59 Identities=15% Similarity=0.206 Sum_probs=39.7
Q ss_pred chHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHc-----CCCCCCCHHHHHHHHHHcCeee
Q 027739 30 ISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-----GVVIDLDPEGVRRCVDEAGIGF 88 (219)
Q Consensus 30 iSt~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLeaL-----Gi~~~~~~~~a~~~L~~~gi~f 88 (219)
+.-+++.+++.+.+-|+--|-.+-+-..|...+.+++ |+++..+...+.+.|+..|+.=
T Consensus 59 l~~aa~~ll~~a~~dvi~~~cTsgs~~~G~~~~~~~i~~~~~g~p~tt~~~A~~~AL~alg~~R 122 (239)
T TIGR02990 59 LTEAAALILPDEELDVVAYSCTSASVVIGDDEVTRAINAAKPGTPVVTPSSAAVDGLAALGVRR 122 (239)
T ss_pred HHHHHHHhcCCCCCCEEEEccchhheecCHHHHHHHHHhcCCCCCeeCHHHHHHHHHHHcCCCE
Confidence 4455667778788888888877766566765555544 6777777777777777655543
No 78
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate though it has partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate and prefer PrCoA as substrate, but can also use AcCoA. Re 2-MCS1 can use butyryl-CoA and valeryl-CoA at a lower rate. A second Ralstonia eutropha 2MC
Probab=26.65 E-value=92 Score=29.11 Aligned_cols=19 Identities=26% Similarity=0.113 Sum_probs=16.8
Q ss_pred CCcchHHHHHHHHcCCCcE
Q 027739 27 TVNISTGASILAAACGAKV 45 (219)
Q Consensus 27 t~NiSt~aA~vlAa~Gv~V 45 (219)
.+|.||.++.++|+.|...
T Consensus 179 ~~n~St~aaRv~aSt~ad~ 197 (363)
T cd06108 179 EFNASTFAARVTASTLSDF 197 (363)
T ss_pred CCcchHHHHHHHhccCCCH
Confidence 4899999999999998765
No 79
>PLN02540 methylenetetrahydrofolate reductase
Probab=26.17 E-value=1.3e+02 Score=29.95 Aligned_cols=71 Identities=10% Similarity=0.107 Sum_probs=45.3
Q ss_pred HHHHHHHcCeeeeeccc------ccHHhhhhHHHHhhcCCCchhHhHhhccCCCCCCeEEEeecChhhHHHHHHHHHHcC
Q 027739 77 VRRCVDEAGIGFMMSTK------YHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFG 150 (219)
Q Consensus 77 a~~~L~~~gi~fl~a~~------~~P~l~~l~~lR~~Lg~RT~fNtl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lG 150 (219)
..+.|.+.+..|+.... ....+.-...+++++|+.++.|+...=.| +.-++...+-+..+|
T Consensus 20 ~~~rl~~~~P~FisVT~gAgGst~~~Tl~la~~lq~~~Gie~i~HLTCrd~n-------------~~~L~~~L~~a~~~G 86 (565)
T PLN02540 20 RMDRMVAHGPLFCDITWGAGGSTADLTLDIANRMQNMICVETMMHLTCTNMP-------------VEKIDHALETIKSNG 86 (565)
T ss_pred HHHHHhccCCCEEEeCCCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCC-------------HHHHHHHHHHHHHCC
Confidence 34556677777776532 23355566678888899887765543222 223334444457889
Q ss_pred CCeEEEEEeC
Q 027739 151 LKRALVVHSE 160 (219)
Q Consensus 151 ~~~alvv~Ge 160 (219)
+++.++++||
T Consensus 87 IrNILALrGD 96 (565)
T PLN02540 87 IQNILALRGD 96 (565)
T ss_pred CCEEEEECCC
Confidence 9999999994
No 80
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=26.14 E-value=2.7e+02 Score=23.56 Aligned_cols=82 Identities=16% Similarity=0.154 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHcCeeeeecccccHH-------hhhhHHHHhhcCCCchh-------HhHhhccCCCCCCeEEEeecChh
Q 027739 72 LDPEGVRRCVDEAGIGFMMSTKYHPA-------MKFVRPVRKKLKVKTVF-------NILGPMLNPACVPFAVVGVYNEN 137 (219)
Q Consensus 72 ~~~~~a~~~L~~~gi~fl~a~~~~P~-------l~~l~~lR~~Lg~RT~f-------Ntl~pLlNP~~~~~~v~Gv~h~~ 137 (219)
.++.+..+.+.+.|+.+++..+.... ...+..+.++.+++=.+ ..+..++. +++...++|....+
T Consensus 32 ~~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~-~Ga~~v~iGs~~~~ 110 (241)
T PRK13585 32 GDPVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLD-LGVDRVILGTAAVE 110 (241)
T ss_pred CCHHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHH-cCCCEEEEChHHhh
Confidence 46777888888899988887666643 34556666666554333 22344454 67888899987766
Q ss_pred hHHHHHHHHHHcCCCeE
Q 027739 138 LVLKMANALQRFGLKRA 154 (219)
Q Consensus 138 ~~~~~a~~l~~lG~~~a 154 (219)
-.+.+.++.+..|.++.
T Consensus 111 ~~~~~~~i~~~~g~~~i 127 (241)
T PRK13585 111 NPEIVRELSEEFGSERV 127 (241)
T ss_pred ChHHHHHHHHHhCCCcE
Confidence 56777888888775443
No 81
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=26.13 E-value=74 Score=26.49 Aligned_cols=126 Identities=14% Similarity=0.158 Sum_probs=61.8
Q ss_pred eeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCC-------------cccHHHHHHHcC----CCCCCCHHHH
Q 027739 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSS-------------ACGSADVLEALG----VVIDLDPEGV 77 (219)
Q Consensus 15 ~Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~~ss-------------k~Gs~dvLeaLG----i~~~~~~~~a 77 (219)
+.|.|.|| +-...|.++|..|.+|. |.+--+. --|..+++++.. .....+.+
T Consensus 3 I~ViGlGy-------vGl~~A~~lA~~G~~V~--g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~-- 71 (185)
T PF03721_consen 3 IAVIGLGY-------VGLPLAAALAEKGHQVI--GVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIE-- 71 (185)
T ss_dssp EEEE--ST-------THHHHHHHHHHTTSEEE--EE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHH--
T ss_pred EEEECCCc-------chHHHHHHHHhCCCEEE--EEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhh--
Confidence 56889998 55678899999999998 4322111 123455555332 22333333
Q ss_pred HHHHHHcCeeeeecccccHH--hhhhHHHHhhcCCCchhHhHhhccCCCCCCeEEEeecChhhHH-HHHHHHHHcCC--C
Q 027739 78 RRCVDEAGIGFMMSTKYHPA--MKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVL-KMANALQRFGL--K 152 (219)
Q Consensus 78 ~~~L~~~gi~fl~a~~~~P~--l~~l~~lR~~Lg~RT~fNtl~pLlNP~~~~~~v~Gv~h~~~~~-~~a~~l~~lG~--~ 152 (219)
+.+++..+.|+..|.-... --.+..+ .+....+++.++| +.-..+-.-.-|+..+ .....++..+. +
T Consensus 72 -~ai~~adv~~I~VpTP~~~~~~~Dls~v------~~a~~~i~~~l~~-~~lvV~~STvppGtt~~~~~~ile~~~~~~~ 143 (185)
T PF03721_consen 72 -EAIKDADVVFICVPTPSDEDGSPDLSYV------ESAIESIAPVLRP-GDLVVIESTVPPGTTEELLKPILEKRSGKKE 143 (185)
T ss_dssp -HHHHH-SEEEE----EBETTTSBETHHH------HHHHHHHHHHHCS-CEEEEESSSSSTTHHHHHHHHHHHHHCCTTT
T ss_pred -hhhhccceEEEecCCCccccCCccHHHH------HHHHHHHHHHHhh-cceEEEccEEEEeeehHhhhhhhhhhccccc
Confidence 3356666666655432211 1122222 2345566666666 2223344555566666 56666665543 3
Q ss_pred eEEEEEe
Q 027739 153 RALVVHS 159 (219)
Q Consensus 153 ~alvv~G 159 (219)
..-+.+.
T Consensus 144 ~f~la~~ 150 (185)
T PF03721_consen 144 DFHLAYS 150 (185)
T ss_dssp CEEEEE-
T ss_pred CCeEEEC
Confidence 4555554
No 82
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=26.07 E-value=1e+02 Score=27.54 Aligned_cols=43 Identities=26% Similarity=0.276 Sum_probs=28.6
Q ss_pred CCcchHHHHHHHHcCCCcEE-eeCCCCCCCcccH----HHHHHHcCCCCC
Q 027739 27 TVNISTGASILAAACGAKVA-KQGSRSSSSACGS----ADVLEALGVVID 71 (219)
Q Consensus 27 t~NiSt~aA~vlAa~Gv~V~-kHG~~~~ssk~Gs----~dvLeaLGi~~~ 71 (219)
|++--.....-+.+.|-.|+ +|.++. |-+|+ -+-|+++||+.+
T Consensus 60 tLeeIi~~m~~a~~~Gk~VvRLhSGDp--siYgA~~EQm~~L~~~gI~ye 107 (254)
T COG2875 60 TLEEIIDLMVDAVREGKDVVRLHSGDP--SIYGALAEQMRELEALGIPYE 107 (254)
T ss_pred CHHHHHHHHHHHHHcCCeEEEeecCCh--hHHHHHHHHHHHHHHcCCCeE
Confidence 56655556666777898888 686653 66774 455677777654
No 83
>PF00538 Linker_histone: linker histone H1 and H5 family; InterPro: IPR005818 Histone proteins have central roles in both chromatin organisation (as structural units of the nucleosome) and gene regulation (as dynamic components that have a direct impact on DNA transcription and replication). Eukaryotic DNA wraps around a histone octamer to form a nucleosome, the first order of compaction of eukaryotic chromatin. The core histone octamer is composed of a central H3-H4 tetramer and two flanking H2A-H2B dimers. Each of the core histone contains a common structural motif, called the histone fold, which facilitates the interactions between the individual core histones. In addition to the core histones, there is a "linker histone" called H1 (or H5 in avian species). The linker histones present in all multicellular eukaryotes are the most divergent group of histones, with numerous cell type- and stage-specific variant. Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures. Histone H5 performs the same function as histone H1, and replaces H1 in certain cells. The structure of GH5, the globular domain of the linker histone H5 is known [, ]. The fold is similar to the DNA-binding domain of the catabolite gene activator protein, CAP, thus providing a possible model for the binding of GH5 to DNA. The linker histones, which do not contain the histone fold motif, are critical to the higher-order compaction of chromatin, because they bind to internucleosomal DNA and facilitate interactions between individual nucleosomes. In addition, H1 variants have been shown to be involved in the regulation of developmental genes. A common feature of this protein family is a tripartite structure in which a globular (H15) domain of about 80 amino acids is flanked by two less structured N- and C-terminal tails. The H15 domain is also characterised by high sequence homology among the family of linker histones. The highly conserved H15 domain is essential for the binding of H1 or H5 to the nucleosome. It consists of a three helix bundle (I-III), with a beta-hairpin at the C terminus. There is also a short three-residue stretch between helices I and II that is in the beta-strand conformation. Together with the C-terminal beta-hairpin, this strand forms the third strand of an antiparallel beta-sheet [, , , ]. Proteins known to contain a H15 domain are: - Eukaryotic histone H1. The histones H1 constitute a family with many variants, differing in their affinity for chromatin. Several variants are simultaneously present in a single cell. For example, the nucleated erythrocytes of birds contain both H1 and H5, the latter being an extreme variant of H1. - Eukaryotic MHYST family of histone acetyltransferase. Histone acetyltransferases transfer an acetyl group from acetyl-CoA to the epsylon- amino group of lysine within the basic NH2-termini of histones, which bind the acidic phosphates of DNA []. This entry represents the H15 domain.; GO: 0003677 DNA binding, 0006334 nucleosome assembly, 0000786 nucleosome, 0005634 nucleus; PDB: 2LSO_A 2RQP_A 1UHM_A 1UST_A 1GHC_A 1HST_A 1YQA_A 1USS_A.
Probab=26.05 E-value=57 Score=23.18 Aligned_cols=19 Identities=5% Similarity=0.013 Sum_probs=16.7
Q ss_pred cChhhHHHHHHHHHHcCCC
Q 027739 134 YNENLVLKMANALQRFGLK 152 (219)
Q Consensus 134 ~h~~~~~~~a~~l~~lG~~ 152 (219)
.||+|.+++.+|...++.+
T Consensus 1 shP~y~~mI~eAI~~l~er 19 (77)
T PF00538_consen 1 SHPPYSDMILEAIKALKER 19 (77)
T ss_dssp -SSCHHHHHHHHHHHCCSS
T ss_pred CCCCHHHHHHHHHHHcCCC
Confidence 4999999999999999865
No 84
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=26.01 E-value=4.2e+02 Score=23.72 Aligned_cols=127 Identities=19% Similarity=0.108 Sum_probs=85.9
Q ss_pred ceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHH-cCCCCC-----CCHHHHHHHHHHcC--
Q 027739 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEA-LGVVID-----LDPEGVRRCVDEAG-- 85 (219)
Q Consensus 14 ~~Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLea-LGi~~~-----~~~~~a~~~L~~~g-- 85 (219)
.+|+-||=|+|...++=..-+---|.+.|.|++.=-|.+..++.-.+.-|+. +|+++. .|..-+++.+.+..
T Consensus 12 l~DlDGvl~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~i~TS~~at~~~l~~~~~~ 91 (269)
T COG0647 12 LFDLDGVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIVTSGDATADYLAKQKPG 91 (269)
T ss_pred EEcCcCceEeCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHHeecHHHHHHHHHHhhCCC
Confidence 5899999999999888766666677789999999988887666644555555 677543 45566666676642
Q ss_pred -eeeeecccccHHhhhhHHHHhhcCCCchhHhHhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCC
Q 027739 86 -IGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGL 151 (219)
Q Consensus 86 -i~fl~a~~~~P~l~~l~~lR~~Lg~RT~fNtl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lG~ 151 (219)
=+|+--+ ..+...=+.+|+..... -||.++.+.++|.-...-.+.+++++..+..
T Consensus 92 ~kv~viG~------~~l~~~l~~~G~~~~~~-----~~~~~~d~Vv~g~d~~~~~e~l~~a~~~i~~ 147 (269)
T COG0647 92 KKVYVIGE------EGLKEELEGAGFELVDE-----EEPARVDAVVVGLDRTLTYEKLAEALLAIAA 147 (269)
T ss_pred CEEEEECC------cchHHHHHhCCcEEecc-----CCCCcccEEEEecCCCCCHHHHHHHHHHHHc
Confidence 4555432 12222224455443321 2343468999999999999999999988743
No 85
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=25.39 E-value=3e+02 Score=25.71 Aligned_cols=120 Identities=20% Similarity=0.202 Sum_probs=63.1
Q ss_pred HHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCC--CHHHHHHHHHHcCeeeee--cccccHHhhhhHHHHhh
Q 027739 32 TGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDL--DPEGVRRCVDEAGIGFMM--STKYHPAMKFVRPVRKK 107 (219)
Q Consensus 32 t~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLeaLGi~~~~--~~~~a~~~L~~~gi~fl~--a~~~~P~l~~l~~lR~~ 107 (219)
.+.|.+|++.|..|. |.+.....- ..+-|+++|+.+.. +++. .+++....... .+.-+|.+..... +.
T Consensus 13 ~~la~~l~~~G~~V~--~~D~~~~~~-~~~~l~~~gi~~~~~~~~~~---~~~~~d~vV~SpgI~~~~~~~~~a~~--~~ 84 (448)
T TIGR01081 13 GGLAMIAKQLGHEVT--GSDANVYPP-MSTQLEAQGIEIIEGFDAAQ---LEPKPDLVVIGNAMKRGNPCVEAVLN--LN 84 (448)
T ss_pred HHHHHHHHhCCCEEE--EECCCCCcH-HHHHHHHCCCEEeCCCCHHH---CCCCCCEEEECCCCCCCCHHHHHHHH--CC
Confidence 567788889999997 666533211 12237889998753 2322 22233333221 2345666544432 22
Q ss_pred cCCCchhHhHhhccCCCCCCeEEEeecChh-hHHHHHHHHHHcCCCeEEEEEe
Q 027739 108 LKVKTVFNILGPMLNPACVPFAVVGVYNEN-LVLKMANALQRFGLKRALVVHS 159 (219)
Q Consensus 108 Lg~RT~fNtl~pLlNP~~~~~~v~Gv~h~~-~~~~~a~~l~~lG~~~alvv~G 159 (219)
+-+.+=.-.+..++.+......|.|-.=+. .-.+++.+|...|.+...++.+
T Consensus 85 i~v~~~~e~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~~~~ 137 (448)
T TIGR01081 85 LPYTSGPQWLHDFVLHDRWVLAVAGTHGKTTTASMLAWVLEQCGLKPGFLIGG 137 (448)
T ss_pred CCEEeHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCCcEEeCc
Confidence 333344444555432222235566655554 4567777888888764444443
No 86
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=25.19 E-value=2.3e+02 Score=25.25 Aligned_cols=73 Identities=15% Similarity=0.093 Sum_probs=53.5
Q ss_pred CceeEeccCCCCCC-CCcchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCC-----CCHHHHHHHHHHcCe
Q 027739 13 DAVDIVGTGGDGAN-TVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID-----LDPEGVRRCVDEAGI 86 (219)
Q Consensus 13 ~~~Di~GtggDg~~-t~NiSt~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLeaLGi~~~-----~~~~~a~~~L~~~gi 86 (219)
-.+|+.||=|+--- ..+.-.+.. .|-..+++|----|..--||.-..+=|..||+++. .+...|.+.+++.+.
T Consensus 10 vLlDlSGtLh~e~~avpga~eAl~-rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~eeei~tsl~aa~~~~~~~~l 88 (262)
T KOG3040|consen 10 VLLDLSGTLHIEDAAVPGAVEALK-RLRDQHVKVKFVTNTTKESKRNLHERLQRLGFDVSEEEIFTSLPAARQYLEENQL 88 (262)
T ss_pred EEEeccceEecccccCCCHHHHHH-HHHhcCceEEEEecCcchhHHHHHHHHHHhCCCccHHHhcCccHHHHHHHHhcCC
Confidence 47999999887665 445444444 45556688877778877788888999999999874 455677777877664
No 87
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=25.11 E-value=1.8e+02 Score=24.65 Aligned_cols=56 Identities=20% Similarity=0.122 Sum_probs=38.6
Q ss_pred ceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCC
Q 027739 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVI 70 (219)
Q Consensus 14 ~~Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLeaLGi~~ 70 (219)
.+|+-||-+++.+-+.=..-+---|.+.|+++..=-|.+. +..-..+.|+.+|++.
T Consensus 12 ~~D~dG~l~~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~-~~~~~~~~L~~~gl~~ 67 (242)
T TIGR01459 12 LLDLWGVIIDGNHTYPGAVQNLNKIIAQGKPVYFVSNSPR-NIFSLHKTLKSLGINA 67 (242)
T ss_pred EEecccccccCCccCccHHHHHHHHHHCCCEEEEEeCCCC-ChHHHHHHHHHCCCCc
Confidence 5899999998887655444444456678999987766332 2222347899999986
No 88
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=24.99 E-value=4.2e+02 Score=22.36 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=15.9
Q ss_pred HHHHHHHHcCCCeEEEEEeCCccccC
Q 027739 141 KMANALQRFGLKRALVVHSEGLDEMS 166 (219)
Q Consensus 141 ~~a~~l~~lG~~~alvv~GeG~dEls 166 (219)
.+.+..+..|. -.++.|+|.||+.
T Consensus 107 ~l~~~a~~~~~--~v~l~G~g~Delf 130 (269)
T cd01991 107 LLSRLARKHGI--KVVLSGEGADELF 130 (269)
T ss_pred HHHHHHHHhCC--EEEEecCCccccc
Confidence 44455555553 4677899999984
No 89
>cd06115 AthCS_per_like Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains three Arabidopsis peroxisomal CS proteins, CYS1, -2, and -3 which are involved in the glyoxylate cycle. AthCYS1, in addition to a peroxisomal targeting sequence, has a predicted secretory signal peptide; it may be targeted to both the secretory pathway and the peroxisomes and is thought to be located in the extracellular matrix. AthCSY1 is expr
Probab=24.70 E-value=1e+02 Score=29.41 Aligned_cols=19 Identities=37% Similarity=0.344 Sum_probs=16.5
Q ss_pred CCcchHHHHHHHHcCCCcE
Q 027739 27 TVNISTGASILAAACGAKV 45 (219)
Q Consensus 27 t~NiSt~aA~vlAa~Gv~V 45 (219)
.+|.||.++.++|+.|...
T Consensus 220 ~~naSTfaarv~aSt~ad~ 238 (410)
T cd06115 220 EMNCSTAAVRHLASSGVDV 238 (410)
T ss_pred CCCchHHHHHHHHhcCCCH
Confidence 5899999999999987754
No 90
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=24.51 E-value=4.8e+02 Score=24.45 Aligned_cols=130 Identities=22% Similarity=0.304 Sum_probs=71.5
Q ss_pred eeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHHHHHHcCeeeee--cc
Q 027739 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMM--ST 92 (219)
Q Consensus 15 ~Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLeaLGi~~~~~~~~a~~~L~~~gi~fl~--a~ 92 (219)
+=++|-|+-|. .++|.+|++.|+.|. |++.-... -.++ |+++|+.+.... -.+.+++.-+.... .|
T Consensus 10 v~viG~G~sG~------s~~a~~L~~~G~~V~--~~D~~~~~-~~~~-l~~~gi~~~~~~--~~~~~~~~d~vv~spgi~ 77 (461)
T PRK00421 10 IHFVGIGGIGM------SGLAEVLLNLGYKVS--GSDLKESA-VTQR-LLELGAIIFIGH--DAENIKDADVVVYSSAIP 77 (461)
T ss_pred EEEEEEchhhH------HHHHHHHHhCCCeEE--EECCCCCh-HHHH-HHHCCCEEeCCC--CHHHCCCCCEEEECCCCC
Confidence 44677666442 225788999999998 44443222 2334 788898874311 12234433333222 24
Q ss_pred cccHHhhhhHHHHhhcCCCchhHhHhhccCCCCCCeEEEeecChh-hHHHHHHHHHHcCCCeEEEEEe
Q 027739 93 KYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNEN-LVLKMANALQRFGLKRALVVHS 159 (219)
Q Consensus 93 ~~~P~l~~l~~lR~~Lg~RT~fNtl~pLlNP~~~~~~v~Gv~h~~-~~~~~a~~l~~lG~~~alvv~G 159 (219)
.-+|.+..... +.+-+-+-...+..++... .-..|.|..=+. .-.++.++|+..|.+....+.|
T Consensus 78 ~~~~~~~~a~~--~~i~i~~~~e~~~~~~~~~-~~I~ITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg 142 (461)
T PRK00421 78 DDNPELVAARE--LGIPVVRRAEMLAELMRFR-TSIAVAGTHGKTTTTSLLAHVLAEAGLDPTFLIGG 142 (461)
T ss_pred CCCHHHHHHHH--CCCcEEeHHHHHHHHHccC-cEEEEECCCCHHHHHHHHHHHHHhcCCCCeEEECc
Confidence 45565544432 2233345555666665432 345566666655 4567778888888655555555
No 91
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=24.43 E-value=59 Score=29.35 Aligned_cols=46 Identities=26% Similarity=0.323 Sum_probs=30.1
Q ss_pred eeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHH
Q 027739 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEA 65 (219)
Q Consensus 15 ~Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLea 65 (219)
+=+.|-||=|+.|. |.+.|+-+|+.|.+|+.=.-+ +....+|+|+.
T Consensus 4 ~~~~GKGGVGKTT~--aaA~A~~~A~~G~rtLlvS~D---pa~~L~d~l~~ 49 (305)
T PF02374_consen 4 LFFGGKGGVGKTTV--AAALALALARRGKRTLLVSTD---PAHSLSDVLGQ 49 (305)
T ss_dssp EEEEESTTSSHHHH--HHHHHHHHHHTTS-EEEEESS---TTTHHHHHHTS
T ss_pred EEEecCCCCCcHHH--HHHHHHHHhhCCCCeeEeecC---CCccHHHHhCC
Confidence 34789999999884 555667789999999986333 23334555543
No 92
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=24.43 E-value=2.9e+02 Score=23.08 Aligned_cols=81 Identities=17% Similarity=0.300 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHcCeeeeecccccHH-------hhhhHHHHhhc--------CCCchhHhHhhccCCCCCCeEEEeecC
Q 027739 71 DLDPEGVRRCVDEAGIGFMMSTKYHPA-------MKFVRPVRKKL--------KVKTVFNILGPMLNPACVPFAVVGVYN 135 (219)
Q Consensus 71 ~~~~~~a~~~L~~~gi~fl~a~~~~P~-------l~~l~~lR~~L--------g~RT~fNtl~pLlNP~~~~~~v~Gv~h 135 (219)
..++.+.++.+++.|+..++.-+.... +..+..+++.. |+|+ ...+.++++ .++...++|..-
T Consensus 28 ~~dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~~pv~~~GgI~~-~e~~~~~~~-~Gad~vvigs~~ 105 (234)
T cd04732 28 SDDPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVGIPVQVGGGIRS-LEDIERLLD-LGVSRVIIGTAA 105 (234)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhcCCCEEEeCCcCC-HHHHHHHHH-cCCCEEEECchH
Confidence 357888888899988766665433222 33456666665 4455 334566665 567788888887
Q ss_pred hhhHHHHHHHHHHcCCCe
Q 027739 136 ENLVLKMANALQRFGLKR 153 (219)
Q Consensus 136 ~~~~~~~a~~l~~lG~~~ 153 (219)
-.-.+.+.++.+..|.++
T Consensus 106 l~dp~~~~~i~~~~g~~~ 123 (234)
T cd04732 106 VKNPELVKELLKEYGGER 123 (234)
T ss_pred HhChHHHHHHHHHcCCce
Confidence 776778888888887533
No 93
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=24.37 E-value=55 Score=20.80 Aligned_cols=31 Identities=10% Similarity=0.245 Sum_probs=19.6
Q ss_pred EEeecChhhHHHHHHHHHHcCCCeEEEEEeC
Q 027739 130 VVGVYNENLVLKMANALQRFGLKRALVVHSE 160 (219)
Q Consensus 130 v~Gv~h~~~~~~~a~~l~~lG~~~alvv~Ge 160 (219)
-+.+.-..-.+-+.+.++.+..++.++||||
T Consensus 11 ~~~fSgHad~~~L~~~i~~~~p~~vilVHGe 41 (43)
T PF07521_consen 11 QIDFSGHADREELLEFIEQLNPRKVILVHGE 41 (43)
T ss_dssp ESGCSSS-BHHHHHHHHHHHCSSEEEEESSE
T ss_pred EEeecCCCCHHHHHHHHHhcCCCEEEEecCC
Confidence 3334444445556666777777899999983
No 94
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=24.18 E-value=1.9e+02 Score=24.60 Aligned_cols=70 Identities=23% Similarity=0.122 Sum_probs=45.6
Q ss_pred ceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHH-cCCCCC-----CCHHHHHHHHHH
Q 027739 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEA-LGVVID-----LDPEGVRRCVDE 83 (219)
Q Consensus 14 ~~Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLea-LGi~~~-----~~~~~a~~~L~~ 83 (219)
.+|+-||=+|+.+-+.-..-+-.-+-+.|+++...-|.+.-++.-..+.|.. +|+++. .+...+.+.|++
T Consensus 2 lfD~DGvL~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~iits~~~~~~~l~~ 77 (236)
T TIGR01460 2 LFDIDGVLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQIITSGSVTKDLLRQ 77 (236)
T ss_pred EEeCcCccCcCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHeeeHHHHHHHHHHH
Confidence 4688888888877555222222334456999999998875555555666666 898753 344556666765
No 95
>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism]
Probab=24.11 E-value=2.2e+02 Score=27.39 Aligned_cols=133 Identities=23% Similarity=0.281 Sum_probs=71.6
Q ss_pred cccccCCCCceeEeccCCCCCCC----C---cchHHH---HHHHHc-CCCcEEeeCCCCCCCc-cc-HHHHHHHcCCCCC
Q 027739 5 ATKVEGLGDAVDIVGTGGDGANT----V---NISTGA---SILAAA-CGAKVAKQGSRSSSSA-CG-SADVLEALGVVID 71 (219)
Q Consensus 5 ~~~~~~~~~~~Di~GtggDg~~t----~---NiSt~a---A~vlAa-~Gv~V~kHG~~~~ssk-~G-s~dvLeaLGi~~~ 71 (219)
.+.+...+..+.|-|+|+ .... + |--|+. .-++|. .+-.++..|..++..| .+ ..|.|+++|+.+.
T Consensus 62 G~~i~~~~~~~~v~g~g~-~~~~~~~~l~~GnSGTt~R~l~glla~~~~~~~~l~Gd~sl~~RPm~~l~~aLr~~Ga~i~ 140 (428)
T COG0128 62 GARIEKEGDTLVVRGTGG-ELKEPPAVLDCGNSGTTLRLLTGLLALGSPGETVLTGDESLRKRPMGPLVDALRQLGAKID 140 (428)
T ss_pred CCeEEccCCEEEEeCCCC-CcCCCCceeeeccchhHHHHHHHHHhcCCCCeEEEECChhhhhCCcHHHHHHHHHCCcEEE
Confidence 344443335566777776 4332 2 333332 222332 4467999999998776 45 7999999999886
Q ss_pred CCHHHHHHHHHHcCeeeeecccccHHhhhhHHHHhhcCCCchhH----hHhhccCCCCCCeEEE--eecChhhHHHHHHH
Q 027739 72 LDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFN----ILGPMLNPACVPFAVV--GVYNENLVLKMANA 145 (219)
Q Consensus 72 ~~~~~a~~~L~~~gi~fl~a~~~~P~l~~l~~lR~~Lg~RT~fN----tl~pLlNP~~~~~~v~--Gv~h~~~~~~~a~~ 145 (219)
.. ++.| |+|....-+ .....+.=..-+-+-|= .+.++..+. ....+ -.-.++|.+.-.+.
T Consensus 141 ~~--------~~~~--~~Pl~i~G~--~~~~~i~i~~~~SSq~vsslL~~a~l~~~~--~~~~~~~~~~s~~yid~T~~m 206 (428)
T COG0128 141 GR--------EGEG--YLPLTIKGG--LKGGEVEIDGPVSSQQVSSLLLLAPLLAEG--TTIIVGGVLESKPYIDHTLDM 206 (428)
T ss_pred ec--------CCCC--cCCEEEECC--CCCceEEEeccchHHHHHHHHHHHhhcCCC--cEEEecCccCCccHHHHHHHH
Confidence 43 1122 333322222 11111111112222222 334444422 22222 56678999999999
Q ss_pred HHHcCCC
Q 027739 146 LQRFGLK 152 (219)
Q Consensus 146 l~~lG~~ 152 (219)
|+..|.+
T Consensus 207 L~~FGv~ 213 (428)
T COG0128 207 LKAFGVE 213 (428)
T ss_pred HHHcCCe
Confidence 9999984
No 96
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=24.10 E-value=3e+02 Score=24.67 Aligned_cols=81 Identities=14% Similarity=0.109 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHcCeeeeecccccH----HhhhhHHHHhhc--------CCCchhHhHhhccCCCCCCeEEEeecChhh-
Q 027739 72 LDPEGVRRCVDEAGIGFMMSTKYHP----AMKFVRPVRKKL--------KVKTVFNILGPMLNPACVPFAVVGVYNENL- 138 (219)
Q Consensus 72 ~~~~~a~~~L~~~gi~fl~a~~~~P----~l~~l~~lR~~L--------g~RT~fNtl~pLlNP~~~~~~v~Gv~h~~~- 138 (219)
.+|.+.++.+++.|..+++.=++-. ...-+..+++ . |+| . -.+..+++ +++.+.++|-.--.-
T Consensus 43 ~dP~~~A~~~~~~Ga~~lHvVDLdgg~~~n~~~i~~i~~-~~~~vqvGGGIR-~-e~i~~~l~-~Ga~rViigT~Av~~~ 118 (262)
T PLN02446 43 KSAAEFAEMYKRDGLTGGHVIMLGADDASLAAALEALRA-YPGGLQVGGGVN-S-ENAMSYLD-AGASHVIVTSYVFRDG 118 (262)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHh-CCCCEEEeCCcc-H-HHHHHHHH-cCCCEEEEchHHHhCC
Confidence 6899999999999999888655533 1223445554 3 788 4 88899988 578888888643333
Q ss_pred ---HHHHHHHHHHcCCCeEEEE
Q 027739 139 ---VLKMANALQRFGLKRALVV 157 (219)
Q Consensus 139 ---~~~~a~~l~~lG~~~alvv 157 (219)
.+.+.+++++.|.++ +++
T Consensus 119 ~~~p~~v~~~~~~~G~~~-Ivv 139 (262)
T PLN02446 119 QIDLERLKDLVRLVGKQR-LVL 139 (262)
T ss_pred CCCHHHHHHHHHHhCCCC-EEE
Confidence 456666777777543 444
No 97
>PF13627 LPAM_2: Prokaryotic lipoprotein-attachment site
Probab=24.06 E-value=59 Score=18.68 Aligned_cols=14 Identities=21% Similarity=0.480 Sum_probs=10.6
Q ss_pred hHHHHHHHHcCCCc
Q 027739 31 STGASILAAACGAK 44 (219)
Q Consensus 31 St~aA~vlAa~Gv~ 44 (219)
..++++.+++||.+
T Consensus 5 ~~~~~~~LsgCG~K 18 (24)
T PF13627_consen 5 LLALALALSGCGQK 18 (24)
T ss_pred HHHHHHHHHhcccC
Confidence 34567888999976
No 98
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=23.90 E-value=1.3e+02 Score=30.06 Aligned_cols=51 Identities=24% Similarity=0.279 Sum_probs=44.4
Q ss_pred chhHhHhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCCCeEEEEEeCCc
Q 027739 112 TVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGL 162 (219)
Q Consensus 112 T~fNtl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lG~~~alvv~GeG~ 162 (219)
.+-|.++||+.=+..++-|+=..+|....-+++.+...+++-.+|+.|||.
T Consensus 198 ~F~~~v~Pll~~A~i~~evv~T~~~~HArei~rt~dl~kyDgIv~vsGDGl 248 (579)
T KOG1116|consen 198 LFKNHVEPLLSEAGISFEVVLTTRPNHAREIVRTLDLGKYDGIVCVSGDGL 248 (579)
T ss_pred HHHhhhhhhhhhcCceEEEEEecCccHHHHHHHhhhccccceEEEecCCcC
Confidence 566889999998888999999999999999999997778888888888985
No 99
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=23.86 E-value=1.1e+02 Score=30.56 Aligned_cols=112 Identities=17% Similarity=0.194 Sum_probs=54.1
Q ss_pred cchHHHHHHHHcC--CCcEEeeCCCCCCC--cccHHHHHHHcCCCCCCCHHHHHHHHHHcCeeeeecccccHHhhhh-HH
Q 027739 29 NISTGASILAAAC--GAKVAKQGSRSSSS--ACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFV-RP 103 (219)
Q Consensus 29 NiSt~aA~vlAa~--Gv~V~kHG~~~~ss--k~Gs~dvLeaLGi~~~~~~~~a~~~L~~~gi~fl~a~~~~P~l~~l-~~ 103 (219)
.+|.++-+++|++ |-+|...|-...+. .....++|+++|++++.+. .++..-......+.++.+ ..
T Consensus 483 D~SsAa~~laaAal~~g~v~I~g~~~~~~q~d~~i~~iL~~mGa~i~~~~---------~~i~i~~~~~~~~~l~~~~iD 553 (673)
T PRK11861 483 DASSASYFLAAGALGGGPLRVEGVGRASIQGDVGFANALMQMGANVTMGD---------DWIEVRGIGHDHGRLAPIDMD 553 (673)
T ss_pred ChHHHHHHHHHHHhcCCeEEECCCCCCCCchHHHHHHHHHHcCCcEEEeC---------CeEEEeeccccCCCccceeec
Confidence 3555544444443 55677777554432 2446799999999886321 112111000000111100 00
Q ss_pred HHhhcCCCchhHhHhhccCCCCCCeEEEeecC---h--hhHHHHHHHHHHcCCC
Q 027739 104 VRKKLKVKTVFNILGPMLNPACVPFAVVGVYN---E--NLVLKMANALQRFGLK 152 (219)
Q Consensus 104 lR~~Lg~RT~fNtl~pLlNP~~~~~~v~Gv~h---~--~~~~~~a~~l~~lG~~ 152 (219)
....=-+=..+-.++-+ +..+..+.|+.| + +-...+.+.|+++|.+
T Consensus 554 ~~~~pDl~p~laalaa~---a~G~s~I~~v~~lr~KEsdRi~a~~~eL~klGa~ 604 (673)
T PRK11861 554 FNLIPDAAMTIAVAALF---ADGPSTLRNIGSWRVKETDRIAAMATELRKVGAT 604 (673)
T ss_pred cccCchHHHHHHHHHHh---CCCCEEEECccccccccchHHHHHHHHHHHcCCE
Confidence 00000001233333333 345688999988 2 3334588889999963
No 100
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=23.80 E-value=1.5e+02 Score=25.95 Aligned_cols=70 Identities=17% Similarity=-0.034 Sum_probs=46.2
Q ss_pred ceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCC-----CCHHHHHHHHHH
Q 027739 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID-----LDPEGVRRCVDE 83 (219)
Q Consensus 14 ~~Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLeaLGi~~~-----~~~~~a~~~L~~ 83 (219)
.+|+-||=+++.+.++=..-+---+.+.|+++..=-|++..++.-..+-|+.+|+++. .+...+.+.|++
T Consensus 6 ~~D~DGtl~~~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~~~i~ts~~~~~~~l~~ 80 (279)
T TIGR01452 6 IFDCDGVLWLGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLAEQLFSSALCAARLLRQ 80 (279)
T ss_pred EEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEecHHHHHHHHHHh
Confidence 4788899888877665433333355677999887766665555556678899999764 122444556666
No 101
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=23.40 E-value=1.9e+02 Score=25.14 Aligned_cols=58 Identities=19% Similarity=0.347 Sum_probs=34.3
Q ss_pred hcCCCchhHh--HhhccCCCCCCeEEEeecC-hhhHHHHHHHHHHcCCCeEEEEEeCCccccCCCCc
Q 027739 107 KLKVKTVFNI--LGPMLNPACVPFAVVGVYN-ENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGP 170 (219)
Q Consensus 107 ~Lg~RT~fNt--l~pLlNP~~~~~~v~Gv~h-~~~~~~~a~~l~~lG~~~alvv~GeG~dEls~~~~ 170 (219)
|+|-.|=.++ +++|.. .|..+=+ +++.+.-.+-|+.+|++++.+++|||.--.+..++
T Consensus 78 EIGtGsGY~aAvla~l~~------~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aP 138 (209)
T COG2518 78 EIGTGSGYQAAVLARLVG------RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAP 138 (209)
T ss_pred EECCCchHHHHHHHHHhC------eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCC
Confidence 4455554543 444433 5666643 44555555558999998888899876543333333
No 102
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=23.35 E-value=1.1e+02 Score=27.82 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=30.2
Q ss_pred EeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCC----C----CCc-----ccHHHHHHHcCCC
Q 027739 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRS----S----SSA-----CGSADVLEALGVV 69 (219)
Q Consensus 17 i~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~----~----ssk-----~Gs~dvLeaLGi~ 69 (219)
|+| || ..-.++|+.|+..|++|...=-+. . .+| ..+.++|++||+-
T Consensus 9 IvG-aG------~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~ 67 (405)
T PRK08850 9 IIG-GG------MVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAW 67 (405)
T ss_pred EEC-cc------HHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCch
Confidence 777 33 345678888999999998643221 0 011 1367899999984
No 103
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=22.87 E-value=1.6e+02 Score=28.10 Aligned_cols=71 Identities=15% Similarity=0.157 Sum_probs=34.7
Q ss_pred eeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCC---CCCCcccHHHHHHHcCCCCC-------CCHHHHHHHHHHc
Q 027739 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSR---SSSSACGSADVLEALGVVID-------LDPEGVRRCVDEA 84 (219)
Q Consensus 15 ~Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~---~~ssk~Gs~dvLeaLGi~~~-------~~~~~a~~~L~~~ 84 (219)
+|.+-+|| |.-.-| ...+.++.+.|++++-...+ ....|.-..++++.+|||+. .+.+++.+..++.
T Consensus 74 ~D~I~pg~-g~lse~--~~~a~~~e~~Gi~~igps~~~i~~~~DK~~~r~~l~~~GIp~pp~~~~~~~~~~e~~~~~~~i 150 (472)
T PRK07178 74 CDALHPGY-GFLSEN--AELAEICAERGIKFIGPSAEVIRRMGDKTEARRAMIKAGVPVTPGSEGNLADLDEALAEAERI 150 (472)
T ss_pred CCEEEeCC-CCcccC--HHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCcCCCCHHHHHHHHHHc
Confidence 45555554 322223 22345556666665522111 12345556667777777651 2345555555555
Q ss_pred Ceee
Q 027739 85 GIGF 88 (219)
Q Consensus 85 gi~f 88 (219)
|+-+
T Consensus 151 gyPv 154 (472)
T PRK07178 151 GYPV 154 (472)
T ss_pred CCcE
Confidence 5433
No 104
>cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. DsCS, compared with CS from the hyperthermophile Pyrococcus furiosus (not included in this group), has an increase in the size of surface loops, a higher proline content in the loop regions, a more accessible active site, and a highe
Probab=22.84 E-value=1.2e+02 Score=28.38 Aligned_cols=19 Identities=16% Similarity=0.106 Sum_probs=16.8
Q ss_pred CCcchHHHHHHHHcCCCcE
Q 027739 27 TVNISTGASILAAACGAKV 45 (219)
Q Consensus 27 t~NiSt~aA~vlAa~Gv~V 45 (219)
.+|.||.++.++|+.|...
T Consensus 181 g~n~St~aaR~~aSt~ad~ 199 (362)
T cd06111 181 SFNASTFTARVITSTLSDI 199 (362)
T ss_pred CCchhHHHHHHHHccCCCH
Confidence 5899999999999998765
No 105
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=22.75 E-value=2.8e+02 Score=24.77 Aligned_cols=114 Identities=16% Similarity=0.268 Sum_probs=82.0
Q ss_pred CCCCHHHHHHHHHHcCeeeeec----ccccHHhhhhHHHHhhcCCCch-------------hHhHhhccCCCCCCeEEEe
Q 027739 70 IDLDPEGVRRCVDEAGIGFMMS----TKYHPAMKFVRPVRKKLKVKTV-------------FNILGPMLNPACVPFAVVG 132 (219)
Q Consensus 70 ~~~~~~~a~~~L~~~gi~fl~a----~~~~P~l~~l~~lR~~Lg~RT~-------------fNtl~pLlNP~~~~~~v~G 132 (219)
.+.++.+.+...++.|-+.+.. --|+-.+..|..+|+..|+.-+ ..+.+-=++-+.+-..+..
T Consensus 89 ~d~~~ae~A~~Yak~GAs~iSVLTe~k~FkGsledL~~irk~~~~k~p~~~lL~KeFivd~~QI~~aR~~GADaVLLIva 168 (289)
T KOG4201|consen 89 LDANAAEQALAYAKGGASCISVLTEPKWFKGSLEDLVAIRKIAGVKCPPKCLLRKEFIVDPYQIYEARLKGADAVLLIVA 168 (289)
T ss_pred cccCHHHHHHHHHhcCceeeeeecCchhhcccHHHHHHHHHHhcCcCChHhHhHHHHccCHHHHHHHHhcCCceeehHHH
Confidence 4456777777788888877753 3567789999999999988754 4455555555555566677
Q ss_pred ecChhhHHHHHHHHHHcCCCeEEEEEe-CCc---cccCCCCceEEEEEeCCcEEEEEec
Q 027739 133 VYNENLVLKMANALQRFGLKRALVVHS-EGL---DEMSPLGPGLILDVTQEKIERFSFD 187 (219)
Q Consensus 133 v~h~~~~~~~a~~l~~lG~~~alvv~G-eG~---dEls~~~~t~i~~v~~g~i~~~~l~ 187 (219)
+-.......+-...+.||.+--+=|+. |-+ -|+ -.++..++|.....|++|
T Consensus 169 mLs~~~lk~l~k~~K~L~me~LVEVn~~eEm~ralei----GakvvGvNNRnL~sFeVD 223 (289)
T KOG4201|consen 169 MLSDLLLKELYKISKDLGMEPLVEVNDEEEMQRALEI----GAKVVGVNNRNLHSFEVD 223 (289)
T ss_pred HcChHHHHHHHHHHHHcCCcceeeeccHHHHHHHHHh----CcEEEeecCCccceeeec
Confidence 778888889999999999976666776 433 233 345777888888888775
No 106
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=22.22 E-value=1.1e+02 Score=27.58 Aligned_cols=51 Identities=16% Similarity=0.362 Sum_probs=40.5
Q ss_pred CCcEEeeCCCCCCCcccHHHHHHHcCCCC----CCCHHHHHHHHHHcCeeeeecc
Q 027739 42 GAKVAKQGSRSSSSACGSADVLEALGVVI----DLDPEGVRRCVDEAGIGFMMST 92 (219)
Q Consensus 42 Gv~V~kHG~~~~ssk~Gs~dvLeaLGi~~----~~~~~~a~~~L~~~gi~fl~a~ 92 (219)
.+-|+.-=|-+.++-.+..+.|++-|+|. +..-..+.+.+++.|++|+-.+
T Consensus 62 Df~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~d~l~~~g~GYIivk 116 (277)
T PRK00994 62 DFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPGKKVKDAMEEQGLGYIIVK 116 (277)
T ss_pred CEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCccchHHHHHhcCCcEEEEe
Confidence 45566556777888888999999999984 3445667799999999999765
No 107
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=22.20 E-value=56 Score=27.53 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=26.0
Q ss_pred EeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCC
Q 027739 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSR 51 (219)
Q Consensus 17 i~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~ 51 (219)
+.|.||-|+.|+ +...|..+|+.|.+|+.=..+
T Consensus 4 ~~g~~g~Gkt~~--~~~la~~~a~~g~~~~l~~~d 36 (217)
T cd02035 4 FTGKGGVGKTTI--AAATAVRLAEEGKKVLLVSTD 36 (217)
T ss_pred EeCCCCchHHHH--HHHHHHHHHHCCCcEEEEECC
Confidence 678888888776 666688888999999986544
No 108
>PRK08013 oxidoreductase; Provisional
Probab=22.05 E-value=1.5e+02 Score=27.02 Aligned_cols=47 Identities=26% Similarity=0.289 Sum_probs=30.1
Q ss_pred eEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCC---------Cc-----ccHHHHHHHcCCC
Q 027739 16 DIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSS---------SA-----CGSADVLEALGVV 69 (219)
Q Consensus 16 Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~~s---------sk-----~Gs~dvLeaLGi~ 69 (219)
=|+|-| ..-.++|+.||+.|++|..-=-+..+ .| ..+.++|++||+-
T Consensus 7 ~IvGaG-------paGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~ 67 (400)
T PRK08013 7 VIAGGG-------MVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVW 67 (400)
T ss_pred EEECcC-------HHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCc
Confidence 377733 35567889999999999853322111 11 1257899999983
No 109
>PRK05614 gltA type II citrate synthase; Reviewed
Probab=22.04 E-value=99 Score=29.52 Aligned_cols=31 Identities=29% Similarity=0.183 Sum_probs=21.3
Q ss_pred ceeEeccCCCCCCCCcchHHHHHHHHcCCCcE
Q 027739 14 AVDIVGTGGDGANTVNISTGASILAAACGAKV 45 (219)
Q Consensus 14 ~~Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V 45 (219)
.+|.+..=.--+ .+|.||+++.++|+.|...
T Consensus 221 ~ld~~LiL~ADH-~~n~STfa~RvvaSt~adl 251 (419)
T PRK05614 221 ALDRIFILHADH-EQNASTSTVRLAGSSGANP 251 (419)
T ss_pred HHHHHHhhhccC-CCCcchHHHhhhhccCCCH
Confidence 344444333222 4899999999999998765
No 110
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=21.89 E-value=75 Score=22.34 Aligned_cols=21 Identities=14% Similarity=0.197 Sum_probs=16.6
Q ss_pred HHHHHHHHcCeeeeecccccH
Q 027739 76 GVRRCVDEAGIGFMMSTKYHP 96 (219)
Q Consensus 76 ~a~~~L~~~gi~fl~a~~~~P 96 (219)
+++..|.+.||-|++.|.-..
T Consensus 14 E~A~~La~~GIRFVpiPv~~d 34 (61)
T PF07131_consen 14 EMAHSLAHIGIRFVPIPVVTD 34 (61)
T ss_pred HHHHHHHHcCceeeccccccH
Confidence 455689999999999986544
No 111
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=21.82 E-value=75 Score=24.37 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHcCeeeeecccccHHhh
Q 027739 73 DPEGVRRCVDEAGIGFMMSTKYHPAMK 99 (219)
Q Consensus 73 ~~~~a~~~L~~~gi~fl~a~~~~P~l~ 99 (219)
+.+..+..|++.||.|++.+.+.|.-.
T Consensus 32 ~k~~l~~~l~~~gi~Y~~~~~Lg~~~~ 58 (122)
T PF04343_consen 32 NKEDLASFLEEAGIEYVWLPELGPSRE 58 (122)
T ss_pred CHHHHHHHHHHCCceEeechhhcCccc
Confidence 567778889999999999999888753
No 112
>COG0766 MurA UDP-N-acetylglucosamine enolpyruvyl transferase [Cell envelope biogenesis, outer membrane]
Probab=21.54 E-value=70 Score=30.63 Aligned_cols=105 Identities=20% Similarity=0.188 Sum_probs=69.7
Q ss_pred hHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHHHHHHcCeeeeecccccHHhhhhHHHHhhcCC
Q 027739 31 STGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKV 110 (219)
Q Consensus 31 St~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLeaLGi~~~~~~~~a~~~L~~~gi~fl~a~~~~P~l~~l~~lR~~Lg~ 110 (219)
-..+|-+||. -+|.++.-...+...-..++|+.||..++.+- .+.--+.++...-.-..---+|+ +
T Consensus 27 pii~AtlLa~--~~v~L~NvP~l~DV~~~~~ll~~lG~~v~~~~---------~~~~~i~~~~i~~~~apy~~v~k---m 92 (421)
T COG0766 27 PLLAATLLAD--EPVTLTNVPDLSDVETMLELLRNLGAKVERDG---------DGELEIDAPNINSTEAPYELVRK---M 92 (421)
T ss_pred HHHHHHHhCC--CcEEEeCCCChHHHHHHHHHHHHcCCEEEEcc---------CceEEEcccccccccCCHHHHHH---H
Confidence 3456667777 58888888777777788999999999987542 34444555432221112233444 6
Q ss_pred CchhHhHhhccCCCC-CC-----eEEEeecChhhHHHHHHHHHHcCCC
Q 027739 111 KTVFNILGPMLNPAC-VP-----FAVVGVYNENLVLKMANALQRFGLK 152 (219)
Q Consensus 111 RT~fNtl~pLlNP~~-~~-----~~v~Gv~h~~~~~~~a~~l~~lG~~ 152 (219)
|..+..+|||+-=++ +. -.-+|- .=.++|.+.++.||.+
T Consensus 93 RASi~vlGplLaR~g~a~V~LPGGCaIG~---RPvDlHl~gleaLGA~ 137 (421)
T COG0766 93 RASILVLGPLLARFGKAKVSLPGGCAIGA---RPVDLHLKGLEALGAE 137 (421)
T ss_pred HhHHHHHHHHHhhcCceEECCCCCccCCC---CchhHHHHHHHHcCCE
Confidence 889999999996543 22 223443 4468899999999974
No 113
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, an
Probab=21.49 E-value=2.2e+02 Score=26.60 Aligned_cols=78 Identities=23% Similarity=0.358 Sum_probs=40.4
Q ss_pred CCcchHHHHHHHHcCCCcEEe---eCCCC-CCCccc-----HHHHHHHcCCCCCCCHHHHHHHHHH----c----Ceeee
Q 027739 27 TVNISTGASILAAACGAKVAK---QGSRS-SSSACG-----SADVLEALGVVIDLDPEGVRRCVDE----A----GIGFM 89 (219)
Q Consensus 27 t~NiSt~aA~vlAa~Gv~V~k---HG~~~-~ssk~G-----s~dvLeaLGi~~~~~~~~a~~~L~~----~----gi~fl 89 (219)
.+|.||.++.++|+.+..... =|--+ ..+.+| ..+.|+..| +++++++.+++ . ||+.=
T Consensus 185 g~n~STfaaRvvaSt~ad~~s~~~aai~al~GplHGGA~e~~~~~l~~i~-----~~~~~~~~v~~~l~~~~~i~GfGH~ 259 (373)
T cd06112 185 TMNASTFSALVTGSTLADPYAVISSAIGTLSGPLHGGANEDVLEMLEEIG-----SPENVKAYLDKKLANKQKIWGFGHR 259 (373)
T ss_pred CCCchHHHHHHHHhcCCcHHHHHHHHHHhccCccccchHHHHHHHHHHhC-----CHHHHHHHHHHHHhcCCeeeCCCCc
Confidence 689999999999997654410 01011 122223 345566654 44555554433 2 44333
Q ss_pred ecccccHHhhhhHHHHhhcC
Q 027739 90 MSTKYHPAMKFVRPVRKKLK 109 (219)
Q Consensus 90 ~a~~~~P~l~~l~~lR~~Lg 109 (219)
.-...-|-...|..+=++++
T Consensus 260 vyk~~DPRa~~L~~~~~~l~ 279 (373)
T cd06112 260 VYKTKDPRATILQKLAEDLF 279 (373)
T ss_pred cCCCCCcHHHHHHHHHHHHH
Confidence 33445665555555444443
No 114
>PF07471 Phage_Nu1: Phage DNA packaging protein Nu1; InterPro: IPR010906 This entry is represented by the Bacteriophage lambda, Nu1, terminase small subunit. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Terminase, the DNA packaging enzyme of bacteriophage lambda, is a heteromultimer composed of subunits Nu1 and A. The smaller Nu1 terminase subunit has a low-affinity ATPase stimulated by non-specific DNA [].; PDB: 1J9I_A.
Probab=21.44 E-value=41 Score=28.03 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=23.7
Q ss_pred CCcchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcC
Q 027739 27 TVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALG 67 (219)
Q Consensus 27 t~NiSt~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLeaLG 67 (219)
-|++|+-+-==.-..|.||+.+|+++....+-++++.+-+.
T Consensus 11 i~gvS~~ti~~W~~~G~Pv~~~gg~G~~~~~d~~~vi~W~~ 51 (164)
T PF07471_consen 11 IFGVSERTIDKWQRQGMPVVSRGGRGREWEYDTADVIQWYA 51 (164)
T ss_dssp HTT--HHHHHHHTTTT---SS-GGCTS--EEECCHHHHHHT
T ss_pred HHCCCHHHHHHHHHCCCchhccCCCCccceecHHHHHHHHH
Confidence 35677664444456799999999999888888888886553
No 115
>cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-II, the major CS of the gram-positive bacterium Bacillus subtilis. A mutation in the gene which encodes BsCS-II (citZ gene) has been described which resulted in a significant loss of CS activity, partial glutamate auxotrophy, and a sporulation deficiency, a
Probab=21.43 E-value=1.4e+02 Score=27.65 Aligned_cols=19 Identities=26% Similarity=0.160 Sum_probs=16.5
Q ss_pred CCcchHHHHHHHHcCCCcE
Q 027739 27 TVNISTGASILAAACGAKV 45 (219)
Q Consensus 27 t~NiSt~aA~vlAa~Gv~V 45 (219)
.+|.||.++.++|+.|...
T Consensus 181 g~n~Stfa~Rv~aSt~ad~ 199 (356)
T cd06110 181 ELNASTFAARVVASTLSDM 199 (356)
T ss_pred CCchhHHHHHHHHhcCCCH
Confidence 5899999999999998765
No 116
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=21.38 E-value=2.3e+02 Score=21.28 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=36.4
Q ss_pred HHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCC-------C---HHHHHHHHHHcCeeeeec
Q 027739 33 GASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDL-------D---PEGVRRCVDEAGIGFMMS 91 (219)
Q Consensus 33 ~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLeaLGi~~~~-------~---~~~a~~~L~~~gi~fl~a 91 (219)
..|-.++..|+++. +-.|+++.|+..|+++.. + ...+.+.+++..+.++--
T Consensus 17 ~~a~~l~~~G~~i~--------aT~gTa~~L~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~idlVIn 77 (116)
T cd01423 17 PTAQKLSKLGYKLY--------ATEGTADFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKIDLVIN 77 (116)
T ss_pred HHHHHHHHCCCEEE--------EccHHHHHHHHcCCCceEeeeccCCCCCCchhHHHHHHcCCceEEEE
Confidence 45566777888887 344889999999986531 1 156788888888888743
No 117
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=21.27 E-value=1.9e+02 Score=26.25 Aligned_cols=48 Identities=29% Similarity=0.411 Sum_probs=31.8
Q ss_pred eeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCC---------CCcc-----cHHHHHHHcCCC
Q 027739 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSS---------SSAC-----GSADVLEALGVV 69 (219)
Q Consensus 15 ~Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~~---------ssk~-----Gs~dvLeaLGi~ 69 (219)
+-|+| || ..-.++|+.||+.|++|..--.+.. ..+. .+..+|+.||+-
T Consensus 6 v~IvG-gG------~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~ 67 (384)
T PRK08849 6 IAVVG-GG------MVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAW 67 (384)
T ss_pred EEEEC-cC------HHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCc
Confidence 44778 44 3556788999999999996553321 1121 257899999974
No 118
>PRK10026 arsenate reductase; Provisional
Probab=21.08 E-value=94 Score=25.17 Aligned_cols=56 Identities=4% Similarity=-0.067 Sum_probs=40.0
Q ss_pred cCCCCCCCHHHHHHHHHHcCeeeeeccc--ccHHhhhhHHHHhhcCC--CchhHhHhhcc
Q 027739 66 LGVVIDLDPEGVRRCVDEAGIGFMMSTK--YHPAMKFVRPVRKKLKV--KTVFNILGPML 121 (219)
Q Consensus 66 LGi~~~~~~~~a~~~L~~~gi~fl~a~~--~~P~l~~l~~lR~~Lg~--RT~fNtl~pLl 121 (219)
.|++-|.+-.+|.+.|+++|+.|-+... --|.-..|..+=+.+|. +.++|+=+...
T Consensus 7 Y~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l~~~g~~~~~lint~~~~y 66 (141)
T PRK10026 7 YHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLIADMGISVRALLRKNVEPY 66 (141)
T ss_pred EeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHHHhCCCCHHHHHHcCCchH
Confidence 4677788888999999999998877663 34566667777777774 56666655544
No 119
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=21.08 E-value=1.4e+02 Score=23.17 Aligned_cols=41 Identities=17% Similarity=0.114 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHcCeeee-ecccccHHhhhhHHHHhhcCCCch
Q 027739 73 DPEGVRRCVDEAGIGFM-MSTKYHPAMKFVRPVRKKLKVKTV 113 (219)
Q Consensus 73 ~~~~a~~~L~~~gi~fl-~a~~~~P~l~~l~~lR~~Lg~RT~ 113 (219)
+...|-+.|+..-.-.- ....|---++.+.+.|++||+.|+
T Consensus 57 D~alAVR~lE~vK~K~~~~~~~y~~~lqeikp~l~ELGI~t~ 98 (103)
T cd00923 57 DFALAVRILEAIKDKCGAHKEIYPYILQEIKPTLKELGISTP 98 (103)
T ss_pred hHHHHHHHHHHHHHHccCchhhHHHHHHHHhHHHHHHCCCCH
Confidence 45555555552211111 345677788999999999999986
No 120
>PRK06110 hypothetical protein; Provisional
Probab=20.91 E-value=6.1e+02 Score=22.68 Aligned_cols=121 Identities=21% Similarity=0.183 Sum_probs=74.1
Q ss_pred cchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCC---CCH----HHHHHHHHHcCeeeeecccccHHhhhh
Q 027739 29 NISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID---LDP----EGVRRCVDEAGIGFMMSTKYHPAMKFV 101 (219)
Q Consensus 29 NiSt~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLeaLGi~~~---~~~----~~a~~~L~~~gi~fl~a~~~~P~l~~l 101 (219)
|...+.|...+..|+++...=.+..+. .-.+.++++|..+. .+. +.+++..++.|.-| .+.|+|.. +
T Consensus 80 N~g~alA~~a~~~G~~~~ivvp~~~~~--~k~~~i~~~GA~V~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~--~ 153 (322)
T PRK06110 80 NHGQSVAFAARRHGLAATIVVPHGNSV--EKNAAMRALGAELIEHGEDFQAAREEAARLAAERGLHM--VPSFHPDL--V 153 (322)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCCCH--HHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCEE--cCCCCChH--H
Confidence 788889999999999998775554432 23578899998763 222 44555555677544 34566532 1
Q ss_pred HHHHhhcCCCchhH-hHhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCCC-eEEEEEeCCccc
Q 027739 102 RPVRKKLKVKTVFN-ILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLK-RALVVHSEGLDE 164 (219)
Q Consensus 102 ~~lR~~Lg~RT~fN-tl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lG~~-~alvv~GeG~dE 164 (219)
.|-.|... +++.+- ...+.++++-.=+..--++..++.++.+ +.+.|.-+|.+.
T Consensus 154 ------~G~~t~~~Ei~~q~~---~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~~~~ 209 (322)
T PRK06110 154 ------RGVATYALELFRAVP---DLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAHAPA 209 (322)
T ss_pred ------hccchHHHHHHhhCC---CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCCChH
Confidence 14444432 233331 2467788877777777777777766532 566666555433
No 121
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=20.81 E-value=1.3e+02 Score=20.50 Aligned_cols=42 Identities=19% Similarity=0.153 Sum_probs=31.3
Q ss_pred ccHHHHHHHcCCCCC--CCHHHHHHHHHHcCeeeeecccccHHh
Q 027739 57 CGSADVLEALGVVID--LDPEGVRRCVDEAGIGFMMSTKYHPAM 98 (219)
Q Consensus 57 ~Gs~dvLeaLGi~~~--~~~~~a~~~L~~~gi~fl~a~~~~P~l 98 (219)
.+.+++++.|+.+.. ++.++|++.+++.|--=+..+.--+-+
T Consensus 4 ~~~~~v~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~ 47 (69)
T PF00690_consen 4 LSVEEVLKRLNTSSSQGLSSEEVEERRKKYGPNELPEPKKKSLW 47 (69)
T ss_dssp SSHHHHHHHHTTBTSSBBTHHHHHHHHHHHSSSSTTTTTSSSHH
T ss_pred CCHHHHHHHHCcCCCCCCCHHHHHHHHHhcccccccccccCcHH
Confidence 356899999986654 889999999999987766544444444
No 122
>PRK08244 hypothetical protein; Provisional
Probab=20.79 E-value=1.8e+02 Score=27.50 Aligned_cols=45 Identities=20% Similarity=0.252 Sum_probs=29.3
Q ss_pred EeccCCCCCCCCcchHHHHHHHHcCCCcEEeeC---CCCCCCc-cc----HHHHHHHcCC
Q 027739 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQG---SRSSSSA-CG----SADVLEALGV 68 (219)
Q Consensus 17 i~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG---~~~~ssk-~G----s~dvLeaLGi 68 (219)
|+|-| ..-.++|+.|++.|++|..== .....++ .+ +.++|+.+|+
T Consensus 7 IVGaG-------paGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl 59 (493)
T PRK08244 7 IIGGG-------PVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGL 59 (493)
T ss_pred EECCC-------HHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCc
Confidence 77733 455678899999999998422 2111122 11 5789999997
No 123
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=20.79 E-value=2e+02 Score=27.83 Aligned_cols=56 Identities=16% Similarity=0.192 Sum_probs=32.7
Q ss_pred HHHHHHcCCCcEEeeCC---CCCCCcccHHHHHHHcCCCC-------CCCHHHHHHHHHHcCeeee
Q 027739 34 ASILAAACGAKVAKQGS---RSSSSACGSADVLEALGVVI-------DLDPEGVRRCVDEAGIGFM 89 (219)
Q Consensus 34 aA~vlAa~Gv~V~kHG~---~~~ssk~Gs~dvLeaLGi~~-------~~~~~~a~~~L~~~gi~fl 89 (219)
.+-.+.+.|+++.--+. +....|.-..++++.+|||+ ..+.+++.+..++.|+-.+
T Consensus 91 ~a~~~e~~gi~~iGps~~~i~~~~DK~~~k~~l~~~GVpv~p~~~~~v~~~~e~~~~a~~igyPvv 156 (499)
T PRK08654 91 FAKACEKAGIVFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEEGIEDIEEAKEIAEEIGYPVI 156 (499)
T ss_pred HHHHHHHCCCcEECCCHHHHHHhCCHHHHHHHHHHcCcCCCCCcCcCCCCHHHHHHHHHHhCCCEE
Confidence 34555666777662221 22345666777888888875 2356666666666664433
No 124
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=20.70 E-value=2.9e+02 Score=23.59 Aligned_cols=82 Identities=11% Similarity=0.194 Sum_probs=55.7
Q ss_pred HHHHHHHHHHcCeeeeecccccHHhhhhHHHHhhcCCCchhHhHhhccCC-CC---CCeE-EEeecChhhHHHHHHHHHH
Q 027739 74 PEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP-AC---VPFA-VVGVYNENLVLKMANALQR 148 (219)
Q Consensus 74 ~~~a~~~L~~~gi~fl~a~~~~P~l~~l~~lR~~Lg~RT~fNtl~pLlNP-~~---~~~~-v~Gv~h~~~~~~~a~~l~~ 148 (219)
++.++. +.+.|+..+.-...--++.+...+| +.+ ...++++|++..+ .. ..+. ..-+.+.+..+.+.+++..
T Consensus 40 ~~~i~~-l~~~G~~~fg~~~~~Ea~~k~~~lr-~~~-~~~~~~ig~~q~~~~~~~~~~~~l~~~vds~~~~~~l~~~a~~ 116 (229)
T TIGR00044 40 ASAIQI-AYDAGQRAFGENYVQELVEKIKLLE-DLG-KLEWHFIGPLQSNKDRLVVENFDWVHTIDSLKIAKKLNEQREK 116 (229)
T ss_pred HHHHHH-HHHcCCccccEEcHHHHHHHHHHhc-ccC-CceEEEECCCcchHHHHHhhhcCEEEEECCHHHHHHHHHHHHh
Confidence 666666 6677777666666666656666666 456 6778888888444 21 2333 5889999999999999988
Q ss_pred cCCCeEEEEE
Q 027739 149 FGLKRALVVH 158 (219)
Q Consensus 149 lG~~~alvv~ 158 (219)
.|..--+.++
T Consensus 117 ~~~~~~V~l~ 126 (229)
T TIGR00044 117 LQPPLNVLLQ 126 (229)
T ss_pred cCCCceEEEE
Confidence 8765444444
No 125
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=20.42 E-value=91 Score=24.53 Aligned_cols=56 Identities=5% Similarity=0.055 Sum_probs=39.4
Q ss_pred CCCCCCCHHHHHHHHHHcCeeeeecc--cccHHhhhhHHHHhhc--CCCchhHhHhhccC
Q 027739 67 GVVIDLDPEGVRRCVDEAGIGFMMST--KYHPAMKFVRPVRKKL--KVKTVFNILGPMLN 122 (219)
Q Consensus 67 Gi~~~~~~~~a~~~L~~~gi~fl~a~--~~~P~l~~l~~lR~~L--g~RT~fNtl~pLlN 122 (219)
+.+-|.+-..|.+.|++.||.|-... .-.|....+..+=+.+ |.+.++|+=++..-
T Consensus 6 ~~~~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~~l~~~~~g~~~lin~~~~~~k 65 (131)
T PRK01655 6 TSPSCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQILRMTEDGTDEIISTRSKVFQ 65 (131)
T ss_pred eCCCChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHHHHHHhcCCHHHHHhcCcHHHH
Confidence 45666677789999999999886554 4466667777777776 55666666655543
No 126
>TIGR01431 adm_rel adenosine deaminase-related growth factor. Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates.
Probab=20.28 E-value=3.5e+02 Score=26.24 Aligned_cols=13 Identities=0% Similarity=-0.194 Sum_probs=11.7
Q ss_pred CCCcEEeeCCCCC
Q 027739 41 CGAKVAKQGSRSS 53 (219)
Q Consensus 41 ~Gv~V~kHG~~~~ 53 (219)
.|+++..|.++..
T Consensus 319 ~gl~~t~HAGE~~ 331 (479)
T TIGR01431 319 EKLPYFFHAGETN 331 (479)
T ss_pred CCCCEEEecCCcC
Confidence 8999999999874
No 127
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=20.12 E-value=4e+02 Score=23.53 Aligned_cols=58 Identities=16% Similarity=0.158 Sum_probs=33.7
Q ss_pred HHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCC-----CCC-HHHHHHHHHHcCeeeeecc
Q 027739 34 ASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVI-----DLD-PEGVRRCVDEAGIGFMMST 92 (219)
Q Consensus 34 aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLeaLGi~~-----~~~-~~~a~~~L~~~gi~fl~a~ 92 (219)
+.-.+.+.|++|..|.+.... .....++++.+|... ..+ .++..+.+.+.|+.....|
T Consensus 178 ~~~~A~~~g~~v~~H~~E~~~-~~~~~~a~~~~g~~~i~H~~~l~~~~~~~~~l~~~gi~v~~~P 241 (325)
T cd01320 178 AFQRAREAGLRLTAHAGEAGG-PESVRDALDLLGAERIGHGIRAIEDPELVKRLAERNIPLEVCP 241 (325)
T ss_pred HHHHHHHCCCceEEeCCCCCC-HHHHHHHHHHcCCcccchhhccCccHHHHHHHHHcCCeEEECC
Confidence 334455679999999876521 223567788777532 111 1345566667777665444
Done!