BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027740
(219 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NXI|A Chain A, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|B Chain B, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|C Chain C, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|D Chain D, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|E Chain E, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|F Chain F, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|G Chain G, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|H Chain H, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|I Chain I, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|J Chain J, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|K Chain K, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|L Chain L, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
Length = 263
Score = 188 bits (477), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 97/184 (52%), Positives = 122/184 (66%), Gaps = 6/184 (3%)
Query: 4 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIIN 63
G+K L KVK + + I TD+HE+ Q E V +VADIIQIPAFLCRQTDLL+AAAKTG+ +N
Sbjct: 62 GVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVN 121
Query: 64 IKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVA 123
+KKGQF A N EK++ G + + ERGT FGYN+L+VD R+L M++ V+
Sbjct: 122 VKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQW-AKVIY 180
Query: 124 DVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPT 183
D THS+Q P G G SGG+RE I + R A+AVG DGVFME H +P A D T
Sbjct: 181 DATHSVQLPGGL-----GDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDAST 235
Query: 184 QWPL 187
Q PL
Sbjct: 236 QLPL 239
>pdb|2EF9|A Chain A, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2EF9|B Chain B, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
Length = 267
Score = 187 bits (476), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 97/184 (52%), Positives = 122/184 (66%), Gaps = 6/184 (3%)
Query: 4 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIIN 63
G+K L KVK + + I TD+HE+ Q E V +VADIIQIPAFLCRQTDLL+AAAKTG+ +N
Sbjct: 63 GVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVN 122
Query: 64 IKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVA 123
+KKGQF A N EK++ G + + ERGT FGYN+L+VD R+L M++ V+
Sbjct: 123 VKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQW-AKVIY 181
Query: 124 DVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPT 183
D THS+Q P G G SGG+RE I + R A+AVG DGVFME H +P A D PT
Sbjct: 182 DATHSVQLPGGL-----GDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDAPT 236
Query: 184 QWPL 187
PL
Sbjct: 237 ALPL 240
>pdb|2NXG|A Chain A, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXG|B Chain B, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|A Chain A, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|B Chain B, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|C Chain C, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|D Chain D, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|E Chain E, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|F Chain F, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|G Chain G, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|H Chain H, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|I Chain I, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|J Chain J, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|K Chain K, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|L Chain L, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
Length = 263
Score = 187 bits (476), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 97/184 (52%), Positives = 122/184 (66%), Gaps = 6/184 (3%)
Query: 4 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIIN 63
G+K L KVK + + I TD+HE+ Q E V +VADIIQIPAFLCRQTDLL+AAAKTG+ +N
Sbjct: 62 GVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVN 121
Query: 64 IKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVA 123
+KKGQF A N EK++ G + + ERGT FGYN+L+VD R+L M++ V+
Sbjct: 122 VKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQW-AKVIY 180
Query: 124 DVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPT 183
D THS+Q P G G SGG+RE I + R A+AVG DGVFME H +P A D PT
Sbjct: 181 DATHSVQLPGGL-----GDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDAPT 235
Query: 184 QWPL 187
PL
Sbjct: 236 ALPL 239
>pdb|2NX3|A Chain A, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|B Chain B, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|C Chain C, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|D Chain D, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|E Chain E, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|F Chain F, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|G Chain G, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|H Chain H, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|I Chain I, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|J Chain J, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|K Chain K, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|L Chain L, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
Length = 267
Score = 187 bits (476), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 97/184 (52%), Positives = 122/184 (66%), Gaps = 6/184 (3%)
Query: 4 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIIN 63
G+K L KVK + + I TD+HE+ Q E V +VADIIQIPAFLCRQTDLL+AAAKTG+ +N
Sbjct: 63 GVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVN 122
Query: 64 IKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVA 123
+KKGQF A N EK++ G + + ERGT FGYN+L+VD R+L M++ V+
Sbjct: 123 VKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQW-AKVIY 181
Query: 124 DVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPT 183
D THS+Q P G G SGG+RE I + R A+AVG DGVFME H +P A D PT
Sbjct: 182 DATHSVQLPGGL-----GDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDAPT 236
Query: 184 QWPL 187
PL
Sbjct: 237 ALPL 240
>pdb|2NWR|A Chain A, Crystal Structure Of C11n Mutant Of Kdo8p Synthase In
Complex With Pep
pdb|2NWR|B Chain B, Crystal Structure Of C11n Mutant Of Kdo8p Synthase In
Complex With Pep
pdb|2NWS|A Chain A, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NWS|B Chain B, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX1|A Chain A, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX1|B Chain B, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
Length = 267
Score = 187 bits (475), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 97/184 (52%), Positives = 122/184 (66%), Gaps = 6/184 (3%)
Query: 4 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIIN 63
G+K L KVK + + I TD+HE+ Q E V +VADIIQIPAFLCRQTDLL+AAAKTG+ +N
Sbjct: 63 GVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVN 122
Query: 64 IKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVA 123
+KKGQF A N EK++ G + + ERGT FGYN+L+VD R+L M++ V+
Sbjct: 123 VKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQW-AKVIY 181
Query: 124 DVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPT 183
D THS+Q P G G SGG+RE I + R A+AVG DGVFME H +P A D T
Sbjct: 182 DATHSVQLPGGL-----GDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDAST 236
Query: 184 QWPL 187
Q PL
Sbjct: 237 QLPL 240
>pdb|1FWN|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep
pdb|1FWN|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep
pdb|1FWS|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep And
Cadmium
pdb|1FWS|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep And
Cadmium
pdb|1FWT|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep, E4p
And Cadmium
pdb|1FWT|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep, E4p
And Cadmium
pdb|1FWW|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep, A5p
And Cadmium
pdb|1FWW|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep, A5p
And Cadmium
pdb|1FX6|A Chain A, Aquifex Aeolicus Kdo8p Synthase
pdb|1FX6|B Chain B, Aquifex Aeolicus Kdo8p Synthase
pdb|1FXP|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Cadmium
pdb|1FXP|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Cadmium
pdb|1FXQ|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep And
A5p
pdb|1FXQ|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep And
A5p
pdb|1FY6|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Cadmium
And A5p
pdb|1FY6|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Cadmium
And A5p
pdb|1JCX|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Api And
Cadmium
pdb|1JCX|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Api And
Cadmium
pdb|1JCY|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With R5p, Pep
And Cadmium
pdb|1JCY|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With R5p, Pep
And Cadmium
pdb|1PE1|A Chain A, Aquifex Aeolicus Kdo8ps In Complex With Cadmium And 2-Pga
pdb|1PE1|B Chain B, Aquifex Aeolicus Kdo8ps In Complex With Cadmium And 2-Pga
pdb|1PCK|A Chain A, Aquifex Aeolicus Kdo8ps In Complex With Z-Methyl-Pep
pdb|1PCK|B Chain B, Aquifex Aeolicus Kdo8ps In Complex With Z-Methyl-Pep
pdb|1PCW|A Chain A, Aquifex Aeolicus Kdo8ps In Complex With Cadmium And App, A
Bisubstrate Inhibitor
pdb|1PCW|B Chain B, Aquifex Aeolicus Kdo8ps In Complex With Cadmium And App, A
Bisubstrate Inhibitor
pdb|2A21|A Chain A, Aquifex Aeolicus Kdo8ps In Complex With Pep, Po4, And Zn2+
pdb|2A21|B Chain B, Aquifex Aeolicus Kdo8ps In Complex With Pep, Po4, And Zn2+
pdb|2A2I|A Chain A, Aquifex Aeolicus Kdo8ps In Complex With Pep, A5p, Zn2+
pdb|2A2I|B Chain B, Aquifex Aeolicus Kdo8ps In Complex With Pep, A5p, Zn2+
pdb|3E0I|A Chain A, Cu2+ Substituted Aquifex Aeolicus Kdo8ps In Complex With
Pep
pdb|3E0I|B Chain B, Cu2+ Substituted Aquifex Aeolicus Kdo8ps In Complex With
Pep
pdb|3E12|A Chain A, Cu2+ Substituted Aquifex Aeolicus Kdo8ps In Complex With
Kdo8p
pdb|3E12|B Chain B, Cu2+ Substituted Aquifex Aeolicus Kdo8ps In Complex With
Kdo8p
Length = 267
Score = 187 bits (474), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 97/184 (52%), Positives = 122/184 (66%), Gaps = 6/184 (3%)
Query: 4 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIIN 63
G+K L KVK + + I TD+HE+ Q E V +VADIIQIPAFLCRQTDLL+AAAKTG+ +N
Sbjct: 63 GVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVN 122
Query: 64 IKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVA 123
+KKGQF A N EK++ G + + ERGT FGYN+L+VD R+L M++ V+
Sbjct: 123 VKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQW-AKVIY 181
Query: 124 DVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPT 183
D THS+Q P G G SGG+RE I + R A+AVG DGVFME H +P A D T
Sbjct: 182 DATHSVQLPGGL-----GDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDAST 236
Query: 184 QWPL 187
Q PL
Sbjct: 237 QLPL 240
>pdb|1T8X|A Chain A, R106g Kdo8ps With Pep And A5p
pdb|1T8X|B Chain B, R106g Kdo8ps With Pep And A5p
pdb|1T96|A Chain A, R106g Kdo8ps With Pep
pdb|1T96|B Chain B, R106g Kdo8ps With Pep
pdb|1T99|A Chain A, R106g Kdo8ps Without Substrates
pdb|1T99|B Chain B, R106g Kdo8ps Without Substrates
pdb|1ZHA|A Chain A, A. Aeolicus Kdo8ps R106g Mutant In Complex With Pep And
R5p
pdb|1ZHA|B Chain B, A. Aeolicus Kdo8ps R106g Mutant In Complex With Pep And
R5p
pdb|1ZJI|A Chain A, Aquifex Aeolicus Kdo8ps R106g Mutant In Complex With 2pga
And R5p
pdb|1ZJI|B Chain B, Aquifex Aeolicus Kdo8ps R106g Mutant In Complex With 2pga
And R5p
Length = 267
Score = 183 bits (465), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 96/184 (52%), Positives = 121/184 (65%), Gaps = 6/184 (3%)
Query: 4 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIIN 63
G+K L KVK + + I TD+HE+ Q E V +VADIIQIPAFLC QTDLL+AAAKTG+ +N
Sbjct: 63 GVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCGQTDLLLAAAKTGRAVN 122
Query: 64 IKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVA 123
+KKGQF A N EK++ G + + ERGT FGYN+L+VD R+L M++ V+
Sbjct: 123 VKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQW-AKVIY 181
Query: 124 DVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPT 183
D THS+Q P G G SGG+RE I + R A+AVG DGVFME H +P A D T
Sbjct: 182 DATHSVQLPGGL-----GDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDAST 236
Query: 184 QWPL 187
Q PL
Sbjct: 237 QLPL 240
>pdb|1LRN|A Chain A, Aquifex Aeolicus Kdo8p Synthase H185g Mutant In Complex
With Cadmium
pdb|1LRN|B Chain B, Aquifex Aeolicus Kdo8p Synthase H185g Mutant In Complex
With Cadmium
pdb|1LRO|A Chain A, Aquifex Aeolicus Kdo8p Synthase H185g Mutant In Complex
With Pep And Cadmium
pdb|1LRO|B Chain B, Aquifex Aeolicus Kdo8p Synthase H185g Mutant In Complex
With Pep And Cadmium
pdb|1LRQ|A Chain A, Aquifex Aeolicus Kdo8p Synthase H185g Mutant In Complex
With Pep, A5p And Cadmium
pdb|1LRQ|B Chain B, Aquifex Aeolicus Kdo8p Synthase H185g Mutant In Complex
With Pep, A5p And Cadmium
Length = 267
Score = 182 bits (463), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 96/184 (52%), Positives = 121/184 (65%), Gaps = 6/184 (3%)
Query: 4 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIIN 63
G+K L KVK + + I TD+HE+ Q E V +VADIIQIPAFLCRQTDLL+AAAKTG+ +N
Sbjct: 63 GVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVN 122
Query: 64 IKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVA 123
+KKGQF A N EK++ G + + ERGT FGYN+L+VD R+L M++ V+
Sbjct: 123 VKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQW-AKVIY 181
Query: 124 DVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPT 183
D T S+Q P G G SGG+RE I + R A+AVG DGVFME H +P A D T
Sbjct: 182 DATGSVQLPGGL-----GDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDAST 236
Query: 184 QWPL 187
Q PL
Sbjct: 237 QLPL 240
>pdb|3QQ0|A Chain A, Crystal Structure Of A Deletion Mutant (N59) Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3QQ0|B Chain B, Crystal Structure Of A Deletion Mutant (N59) Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3QQ0|C Chain C, Crystal Structure Of A Deletion Mutant (N59) Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3QQ0|D Chain D, Crystal Structure Of A Deletion Mutant (N59) Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
Length = 279
Score = 180 bits (456), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 94/188 (50%), Positives = 121/188 (64%), Gaps = 7/188 (3%)
Query: 3 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKII 62
EGLKI EKVK + IP++TDVHE QC+ V +V D+IQ+PAFL RQTDL+VA AKTG ++
Sbjct: 72 EGLKIFEKVKAEFGIPVITDVHEPHQCQPVAEVCDVIQLPAFLARQTDLVVAMAKTGNVV 131
Query: 63 NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE--ANCP 120
NIKK QF + S M N EK AGN +++CERG+ FGY++L+VD M++ N P
Sbjct: 132 NIKKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDMLGFGVMKQTCGNLP 191
Query: 121 VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVD 180
V+ DVTHSLQ D G ASGG R +A +A + G+F+E H DP A D
Sbjct: 192 VIFDVTHSLQTR-----DAGSAASGGRRAQALDLALAGMATRLAGLFLESHPDPKLAKCD 246
Query: 181 GPTQWPLR 188
GP+ PL
Sbjct: 247 GPSALPLH 254
>pdb|3QPZ|A Chain A, Crystal Structure Of The N59a Mutant Of The
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3QPZ|B Chain B, Crystal Structure Of The N59a Mutant Of The
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3QPZ|C Chain C, Crystal Structure Of The N59a Mutant Of The
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3QPZ|D Chain D, Crystal Structure Of The N59a Mutant Of The
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
Length = 280
Score = 180 bits (456), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 94/188 (50%), Positives = 121/188 (64%), Gaps = 7/188 (3%)
Query: 3 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKII 62
EGLKI EKVK + IP++TDVHE QC+ V +V D+IQ+PAFL RQTDL+VA AKTG ++
Sbjct: 73 EGLKIFEKVKAEFGIPVITDVHEPHQCQPVAEVCDVIQLPAFLARQTDLVVAMAKTGNVV 132
Query: 63 NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE--ANCP 120
NIKK QF + S M N EK AGN +++CERG+ FGY++L+VD M++ N P
Sbjct: 133 NIKKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDMLGFGVMKQTCGNLP 192
Query: 121 VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVD 180
V+ DVTHSLQ D G ASGG R +A +A + G+F+E H DP A D
Sbjct: 193 VIFDVTHSLQTR-----DAGSAASGGRRAQALDLALAGMATRLAGLFLESHPDPKLAKCD 247
Query: 181 GPTQWPLR 188
GP+ PL
Sbjct: 248 GPSALPLH 255
>pdb|2QKF|A Chain A, Crystal Structure Of 3-Deoxy-D-Manno-Octulosonate
8-Phosphate Synthase (Kdo8ps) From Neisseria
Meningitidis
pdb|2QKF|B Chain B, Crystal Structure Of 3-Deoxy-D-Manno-Octulosonate
8-Phosphate Synthase (Kdo8ps) From Neisseria
Meningitidis
pdb|2QKF|C Chain C, Crystal Structure Of 3-Deoxy-D-Manno-Octulosonate
8-Phosphate Synthase (Kdo8ps) From Neisseria
Meningitidis
pdb|2QKF|D Chain D, Crystal Structure Of 3-Deoxy-D-Manno-Octulosonate
8-Phosphate Synthase (Kdo8ps) From Neisseria
Meningitidis
Length = 280
Score = 180 bits (456), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 94/188 (50%), Positives = 121/188 (64%), Gaps = 7/188 (3%)
Query: 3 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKII 62
EGLKI EKVK + IP++TDVHE QC+ V +V D+IQ+PAFL RQTDL+VA AKTG ++
Sbjct: 73 EGLKIFEKVKAEFGIPVITDVHEPHQCQPVAEVCDVIQLPAFLARQTDLVVAMAKTGNVV 132
Query: 63 NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE--ANCP 120
NIKK QF + S M N EK AGN +++CERG+ FGY++L+VD M++ N P
Sbjct: 133 NIKKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDMLGFGVMKQTCGNLP 192
Query: 121 VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVD 180
V+ DVTHSLQ D G ASGG R +A +A + G+F+E H DP A D
Sbjct: 193 VIFDVTHSLQTR-----DAGSAASGGRRAQALDLALAGMATRLAGLFLESHPDPKLAKCD 247
Query: 181 GPTQWPLR 188
GP+ PL
Sbjct: 248 GPSALPLH 255
>pdb|3QPY|A Chain A, Crystal Structure Of A Mutant (K57a) Of
3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3QPY|B Chain B, Crystal Structure Of A Mutant (K57a) Of
3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3QPY|C Chain C, Crystal Structure Of A Mutant (K57a) Of
3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3QPY|D Chain D, Crystal Structure Of A Mutant (K57a) Of
3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
Length = 280
Score = 180 bits (456), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 94/188 (50%), Positives = 121/188 (64%), Gaps = 7/188 (3%)
Query: 3 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKII 62
EGLKI EKVK + IP++TDVHE QC+ V +V D+IQ+PAFL RQTDL+VA AKTG ++
Sbjct: 73 EGLKIFEKVKAEFGIPVITDVHEPHQCQPVAEVCDVIQLPAFLARQTDLVVAMAKTGNVV 132
Query: 63 NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE--ANCP 120
NIKK QF + S M N EK AGN +++CERG+ FGY++L+VD M++ N P
Sbjct: 133 NIKKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDMLGFGVMKQTCGNLP 192
Query: 121 VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVD 180
V+ DVTHSLQ D G ASGG R +A +A + G+F+E H DP A D
Sbjct: 193 VIFDVTHSLQTR-----DAGSAASGGRRAQALDLALAGMATRLAGLFLESHPDPKLAKCD 247
Query: 181 GPTQWPLR 188
GP+ PL
Sbjct: 248 GPSALPLH 255
>pdb|3QQ1|A Chain A, Crystal Structure Of A Double Mutant [a58p, Del(N59)] Of
3-Deoxy-D- Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3QQ1|B Chain B, Crystal Structure Of A Double Mutant [a58p, Del(N59)] Of
3-Deoxy-D- Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3QQ1|C Chain C, Crystal Structure Of A Double Mutant [a58p, Del(N59)] Of
3-Deoxy-D- Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3QQ1|D Chain D, Crystal Structure Of A Double Mutant [a58p, Del(N59)] Of
3-Deoxy-D- Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
Length = 279
Score = 179 bits (455), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 94/188 (50%), Positives = 121/188 (64%), Gaps = 7/188 (3%)
Query: 3 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKII 62
EGLKI EKVK + IP++TDVHE QC+ V +V D+IQ+PAFL RQTDL+VA AKTG ++
Sbjct: 72 EGLKIFEKVKAEFGIPVITDVHEPHQCQPVAEVCDVIQLPAFLARQTDLVVAMAKTGNVV 131
Query: 63 NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE--ANCP 120
NIKK QF + S M N EK AGN +++CERG+ FGY++L+VD M++ N P
Sbjct: 132 NIKKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDMLGFGVMKQTCGNLP 191
Query: 121 VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVD 180
V+ DVTHSLQ D G ASGG R +A +A + G+F+E H DP A D
Sbjct: 192 VIFDVTHSLQTR-----DAGSAASGGRRAQALDLALAGMATRLAGLFLESHPDPKLAKCD 246
Query: 181 GPTQWPLR 188
GP+ PL
Sbjct: 247 GPSALPLH 254
>pdb|3STE|A Chain A, Crystal Structure Of A Mutant (Q202a) Of
3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3STE|B Chain B, Crystal Structure Of A Mutant (Q202a) Of
3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3STE|C Chain C, Crystal Structure Of A Mutant (Q202a) Of
3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3STE|D Chain D, Crystal Structure Of A Mutant (Q202a) Of
3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
Length = 280
Score = 177 bits (449), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 93/188 (49%), Positives = 120/188 (63%), Gaps = 7/188 (3%)
Query: 3 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKII 62
EGLKI EKVK + IP++TDVHE QC+ V +V D+IQ+PAFL RQTDL+VA AKTG ++
Sbjct: 73 EGLKIFEKVKAEFGIPVITDVHEPHQCQPVAEVCDVIQLPAFLARQTDLVVAMAKTGNVV 132
Query: 63 NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE--ANCP 120
NIKK QF + S M N EK AGN +++CERG+ FGY++L+VD M++ N P
Sbjct: 133 NIKKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDMLGFGVMKQTCGNLP 192
Query: 121 VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVD 180
V+ DVTHSL D G ASGG R +A +A + G+F+E H DP A D
Sbjct: 193 VIFDVTHSLATR-----DAGSAASGGRRAQALDLALAGMATRLAGLFLESHPDPKLAKCD 247
Query: 181 GPTQWPLR 188
GP+ PL
Sbjct: 248 GPSALPLH 255
>pdb|3FYP|A Chain A, Crystal Structure Of The Quadruple Mutant
(n23c/c246s/d247e/p249a) Of 3-deoxy-d-manno-octulosonate
8-phosphate Synthase (kdo8ps) From Neisseria
Meningitidis
pdb|3FYP|B Chain B, Crystal Structure Of The Quadruple Mutant
(n23c/c246s/d247e/p249a) Of 3-deoxy-d-manno-octulosonate
8-phosphate Synthase (kdo8ps) From Neisseria
Meningitidis
pdb|3FYP|C Chain C, Crystal Structure Of The Quadruple Mutant
(n23c/c246s/d247e/p249a) Of 3-deoxy-d-manno-octulosonate
8-phosphate Synthase (kdo8ps) From Neisseria
Meningitidis
pdb|3FYP|D Chain D, Crystal Structure Of The Quadruple Mutant
(n23c/c246s/d247e/p249a) Of 3-deoxy-d-manno-octulosonate
8-phosphate Synthase (kdo8ps) From Neisseria
Meningitidis
Length = 280
Score = 175 bits (443), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 92/188 (48%), Positives = 120/188 (63%), Gaps = 7/188 (3%)
Query: 3 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKII 62
EGLKI EKVK + IP++TDVHE QC+ V +V D+IQ+PAFL RQTDL+VA AKTG ++
Sbjct: 73 EGLKIFEKVKAEFGIPVITDVHEPHQCQPVAEVCDVIQLPAFLARQTDLVVAMAKTGNVV 132
Query: 63 NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE--ANCP 120
NIKK QF + S M N EK AGN +++CERG+ FGY++L+VD M++ N P
Sbjct: 133 NIKKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDMLGFGVMKQTCGNLP 192
Query: 121 VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVD 180
V+ DVTHSLQ D G ASGG R +A +A + G+F+E H DP A +
Sbjct: 193 VIFDVTHSLQTR-----DAGSAASGGRRAQALDLALAGMATRLAGLFLESHPDPKLAKSE 247
Query: 181 GPTQWPLR 188
G + PL
Sbjct: 248 GASALPLH 255
>pdb|3FYO|A Chain A, Crystal Structure Of The Triple Mutant (N23cD247EP249A) OF
3-Deoxy- D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3FYO|B Chain B, Crystal Structure Of The Triple Mutant (N23cD247EP249A) OF
3-Deoxy- D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3FYO|C Chain C, Crystal Structure Of The Triple Mutant (N23cD247EP249A) OF
3-Deoxy- D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3FYO|D Chain D, Crystal Structure Of The Triple Mutant (N23cD247EP249A) OF
3-Deoxy- D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
Length = 280
Score = 175 bits (443), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 92/188 (48%), Positives = 120/188 (63%), Gaps = 7/188 (3%)
Query: 3 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKII 62
EGLKI EKVK + IP++TDVHE QC+ V +V D+IQ+PAFL RQTDL+VA AKTG ++
Sbjct: 73 EGLKIFEKVKAEFGIPVITDVHEPHQCQPVAEVCDVIQLPAFLARQTDLVVAMAKTGNVV 132
Query: 63 NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE--ANCP 120
NIKK QF + S M N EK AGN +++CERG+ FGY++L+VD M++ N P
Sbjct: 133 NIKKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDMLGFGVMKQTCGNLP 192
Query: 121 VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVD 180
V+ DVTHSLQ D G ASGG R +A +A + G+F+E H DP A +
Sbjct: 193 VIFDVTHSLQTR-----DAGSAASGGRRAQALDLALAGMATRLAGLFLESHPDPKLAKCE 247
Query: 181 GPTQWPLR 188
G + PL
Sbjct: 248 GASALPLH 255
>pdb|3TML|A Chain A, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Cenocepacia
pdb|3TML|B Chain B, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Cenocepacia
pdb|3TML|C Chain C, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Cenocepacia
pdb|3TML|D Chain D, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Cenocepacia
Length = 288
Score = 174 bits (442), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 95/193 (49%), Positives = 120/193 (62%), Gaps = 11/193 (5%)
Query: 1 MVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGK 60
M EGL+IL +VK +P++TDVH + E+V V D++Q PAFLCRQTD + A A++GK
Sbjct: 73 MDEGLRILSEVKRQLGLPVLTDVHSIDEIEQVASVVDVLQTPAFLCRQTDFIHACARSGK 132
Query: 61 IINIKKGQFCASSVMVNSAEKVRLAGNP------NVMVCERGTMFGYNDLIVDPRNLEWM 114
+NIKKGQF A M N +K R A M CERG FGYN+L+ D R+L M
Sbjct: 133 PVNIKKGQFLAPHDMKNVIDKARDAAREAGLSEDRFMACERGVSFGYNNLVSDMRSLAIM 192
Query: 115 REANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDP 174
RE N PVV D THS+Q P G+ +SGG RE +P +AR A+A GV G+FME H +P
Sbjct: 193 RETNAPVVFDATHSVQLPGGQG-----TSSGGQREFVPVLARAAVATGVAGLFMETHPNP 247
Query: 175 LNAPVDGPTQWPL 187
A DGP PL
Sbjct: 248 AEAKSDGPNAVPL 260
>pdb|3T4C|A Chain A, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Ambifaria
pdb|3T4C|B Chain B, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Ambifaria
pdb|3T4C|C Chain C, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Ambifaria
pdb|3T4C|D Chain D, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Ambifaria
Length = 288
Score = 172 bits (437), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 94/193 (48%), Positives = 120/193 (62%), Gaps = 11/193 (5%)
Query: 1 MVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGK 60
M EGL+IL +VK +P++TDVH + E+V V D++Q PAFLCRQTD + A A++GK
Sbjct: 73 MDEGLRILGEVKRQLGLPVLTDVHSIDEIEQVASVVDVLQTPAFLCRQTDFIHACARSGK 132
Query: 61 IINIKKGQFCASSVMVNSAEKVRLAGNP------NVMVCERGTMFGYNDLIVDPRNLEWM 114
+NIKKGQF A M N +K R A M CERG FGYN+L+ D R+L M
Sbjct: 133 PVNIKKGQFLAPHDMKNVIDKAREAAREAGLSEDRFMACERGVSFGYNNLVSDMRSLAIM 192
Query: 115 REANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDP 174
RE + PVV D THS+Q P G+ +SGG RE +P +AR A+A GV G+FME H +P
Sbjct: 193 RETSAPVVFDATHSVQLPGGQG-----TSSGGQREFVPVLARAAVATGVAGLFMETHPNP 247
Query: 175 LNAPVDGPTQWPL 187
A DGP PL
Sbjct: 248 AEAKSDGPNAVPL 260
>pdb|1O60|A Chain A, Crystal Structure Of Kdo-8-Phosphate Synthase
pdb|1O60|B Chain B, Crystal Structure Of Kdo-8-Phosphate Synthase
pdb|1O60|C Chain C, Crystal Structure Of Kdo-8-Phosphate Synthase
pdb|1O60|D Chain D, Crystal Structure Of Kdo-8-Phosphate Synthase
Length = 292
Score = 172 bits (435), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/187 (47%), Positives = 121/187 (64%), Gaps = 7/187 (3%)
Query: 3 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKII 62
EGLKI +++K + + I+TDVHE QC+ V V DIIQ+PAFL RQTDL+ A AKTG +I
Sbjct: 76 EGLKIFQELKDTFGVKIITDVHEIYQCQPVADVVDIIQLPAFLARQTDLVEAXAKTGAVI 135
Query: 63 NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREAN--CP 120
N+KK QF + S N EK+ GN +++C+RGT FGY++LIVD ++A+ P
Sbjct: 136 NVKKPQFLSPSQXGNIVEKIEECGNDKIILCDRGTNFGYDNLIVDXLGFSVXKKASKGSP 195
Query: 121 VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVD 180
V+ DVTHSLQ D G AS G R + +AR+ +AVG+ G+F+E H +P A D
Sbjct: 196 VIFDVTHSLQC-----RDPFGAASSGRRAQVTELARSGLAVGIAGLFLEAHPNPNQAKCD 250
Query: 181 GPTQWPL 187
GP+ PL
Sbjct: 251 GPSALPL 257
>pdb|3SZ8|A Chain A, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Pseudomallei
pdb|3SZ8|B Chain B, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Pseudomallei
pdb|3SZ8|C Chain C, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Pseudomallei
pdb|3SZ8|D Chain D, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Pseudomallei
pdb|3TMQ|A Chain A, Crystal Structure Of A 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Pseudomallei In Complex With
D-Arabinose-5-Phosphate
pdb|3TMQ|B Chain B, Crystal Structure Of A 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Pseudomallei In Complex With
D-Arabinose-5-Phosphate
pdb|3TMQ|C Chain C, Crystal Structure Of A 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Pseudomallei In Complex With
D-Arabinose-5-Phosphate
pdb|3TMQ|D Chain D, Crystal Structure Of A 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Pseudomallei In Complex With
D-Arabinose-5-Phosphate
pdb|3UND|A Chain A, Substrate-Bound Crystal Structure Of
2-Dehydro-3-Deoxyphosphooctonate Aldolase From
Burkholderia Pseudomallei
pdb|3UND|B Chain B, Substrate-Bound Crystal Structure Of
2-Dehydro-3-Deoxyphosphooctonate Aldolase From
Burkholderia Pseudomallei
pdb|3UND|C Chain C, Substrate-Bound Crystal Structure Of
2-Dehydro-3-Deoxyphosphooctonate Aldolase From
Burkholderia Pseudomallei
pdb|3UND|D Chain D, Substrate-Bound Crystal Structure Of
2-Dehydro-3-Deoxyphosphooctonate Aldolase From
Burkholderia Pseudomallei
Length = 285
Score = 171 bits (434), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 90/189 (47%), Positives = 119/189 (62%), Gaps = 7/189 (3%)
Query: 3 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKII 62
EGLKI +VK + +P++TDVHE Q V ++AD++Q+PAFL RQTDL+VA AK GK +
Sbjct: 78 EGLKIFAEVKARFGVPVITDVHEAEQAAPVAEIADVLQVPAFLARQTDLVVAIAKAGKPV 137
Query: 63 NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREAN--CP 120
N+KK QF + + + + K GN VM+CERG+ FGY++L+VD M E CP
Sbjct: 138 NVKKPQFMSPTQLKHVVSKCGEVGNDRVMLCERGSSFGYDNLVVDMLGFRQMAETTGGCP 197
Query: 121 VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVD 180
V+ DVTHSLQ D G ASGG R + +AR IAVG+ G+F+E H DP A D
Sbjct: 198 VIFDVTHSLQC-----RDPLGDASGGRRRQVLDLARAGIAVGIAGLFLEAHPDPDRARCD 252
Query: 181 GPTQWPLRN 189
GP+ PL
Sbjct: 253 GPSALPLHQ 261
>pdb|1D9E|A Chain A, Structure Of E. Coli Kdo8p Synthase
pdb|1D9E|B Chain B, Structure Of E. Coli Kdo8p Synthase
pdb|1D9E|C Chain C, Structure Of E. Coli Kdo8p Synthase
pdb|1D9E|D Chain D, Structure Of E. Coli Kdo8p Synthase
pdb|1GG0|A Chain A, Crystal Structure Analysis Of Kdop Synthase At 3.0 A
pdb|1G7V|A Chain A, Crystal Structures Of Kdo8p Synthase In Its Binary
Complexes With The Mechanism-Based Inhibitor
pdb|1PHQ|A Chain A, Crystal Structure Of Kdo8p Synthase In Its Binary Complex
With Substrate Analog E-Fpep
pdb|1PHW|A Chain A, Crystal Structure Of Kdo8p Synthase In Its Binary Complex
With Substrate Analog 1-Deoxy-A5p
pdb|1PL9|A Chain A, Crystal Structure Of Kdo8p Synthase In Its Binary Complex
With Substrate Analog Z-Fpep
pdb|1Q3N|A Chain A, Crystal Structure Of Kdo8p Synthase In Its Binary Complex
With Substrate Pep
pdb|1X6U|A Chain A, Kdo8p Synthase In It's Binary Complex With The Product
Kdo8p
pdb|1X8F|A Chain A, Crystal Structure Of Apo-kdo8p Synthase
Length = 284
Score = 170 bits (431), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 90/211 (42%), Positives = 128/211 (60%), Gaps = 7/211 (3%)
Query: 3 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKII 62
EG+KI +++K + + I+TDVHE Q + V V D+IQ+PAFL RQTDL+ A AKTG +I
Sbjct: 76 EGMKIFQELKQTFGVKIITDVHEPSQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVI 135
Query: 63 NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE--ANCP 120
N+KK QF + M N +K + GN V++C+RG FGY++L+VD M++ N P
Sbjct: 136 NVKKPQFVSPGQMGNIVDKFKEGGNEKVILCDRGANFGYDNLVVDMLGFSIMKKVSGNSP 195
Query: 121 VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVD 180
V+ DVTH+LQ D G ASGG R + +AR +AVG+ G+F+E H DP +A D
Sbjct: 196 VIFDVTHALQC-----RDPFGAASGGRRAQVAELARAGMAVGLAGLFIEAHPDPEHAKCD 250
Query: 181 GPTQWPLRNXXXXXXXXVAIAKVSKGKQRMN 211
GP+ PL AI + KG + ++
Sbjct: 251 GPSALPLAKLEPFLKQMKAIDDLVKGFEELD 281
>pdb|3STF|A Chain A, Crystal Structure Of A Mutant (S211a) Of
3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3STF|B Chain B, Crystal Structure Of A Mutant (S211a) Of
3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3STF|C Chain C, Crystal Structure Of A Mutant (S211a) Of
3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3STF|D Chain D, Crystal Structure Of A Mutant (S211a) Of
3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
Length = 280
Score = 168 bits (426), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/188 (49%), Positives = 121/188 (64%), Gaps = 7/188 (3%)
Query: 3 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKII 62
EGLKI EKVK + IP++TDVHE QC+ V +V D+IQ+PAFL RQTDL+VA AKTG ++
Sbjct: 73 EGLKIFEKVKAEFGIPVITDVHEPHQCQPVAEVCDVIQLPAFLARQTDLVVAMAKTGNVV 132
Query: 63 NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREA--NCP 120
NIKK QF + S M N EK AGN +++CERG+ FGY++L+VD M++ N P
Sbjct: 133 NIKKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDMLGFGVMKQTCGNLP 192
Query: 121 VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVD 180
V+ DVTHSLQ D G A+GG R +A +A + G+F+E H DP A D
Sbjct: 193 VIFDVTHSLQTR-----DAGSAAAGGRRAQALDLALAGMATRLAGLFLESHPDPKLAKCD 247
Query: 181 GPTQWPLR 188
GP+ PL
Sbjct: 248 GPSALPLH 255
>pdb|1G7U|A Chain A, Crystal Structures Of Kdo8p Synthase In Its Binary Complex
With Substrate Phosphoenol Pyruvate
Length = 284
Score = 166 bits (421), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 89/211 (42%), Positives = 127/211 (60%), Gaps = 7/211 (3%)
Query: 3 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKII 62
EG+KI +++K + + I+TDVHE Q + V V D+IQ+PAFL RQTDL+ A AKTG +I
Sbjct: 76 EGMKIFQELKQTFGVKIITDVHEPSQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVI 135
Query: 63 NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE--ANCP 120
N+KK QF + M N +K + GN V++C+RG FGY++L+VD M++ N P
Sbjct: 136 NVKKPQFVSPGQMGNIVDKFKEGGNEKVILCDRGANFGYDNLVVDMLGFSIMKKVSGNSP 195
Query: 121 VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVD 180
V+ DVTH+LQ D ASGG R + +AR +AVG+ G+F+E H DP +A D
Sbjct: 196 VIFDVTHALQC-----RDPFVAASGGRRAQVAELARAGMAVGLAGLFIEAHPDPEHAKCD 250
Query: 181 GPTQWPLRNXXXXXXXXVAIAKVSKGKQRMN 211
GP+ PL AI + KG + ++
Sbjct: 251 GPSALPLAKLEPFLKQMKAIDDLVKGFEELD 281
>pdb|3STC|A Chain A, Crystal Structure Of Loop 7 Truncated Mutant Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3STC|B Chain B, Crystal Structure Of Loop 7 Truncated Mutant Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3STC|C Chain C, Crystal Structure Of Loop 7 Truncated Mutant Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3STC|D Chain D, Crystal Structure Of Loop 7 Truncated Mutant Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
Length = 269
Score = 165 bits (418), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/188 (47%), Positives = 118/188 (62%), Gaps = 18/188 (9%)
Query: 3 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKII 62
EGLKI EKVK + IP++TDVHE QC+ V +V D+IQ+PAFL RQTDL+VA AKTG ++
Sbjct: 73 EGLKIFEKVKAEFGIPVITDVHEPHQCQPVAEVCDVIQLPAFLARQTDLVVAMAKTGNVV 132
Query: 63 NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE--ANCP 120
NIKK QF + S M N EK AGN +++CERG+ FGY++L+VD M++ N P
Sbjct: 133 NIKKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDMLGFGVMKQTCGNLP 192
Query: 121 VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVD 180
V+ DVTHSL + A + LD +A +A + G+F+E H DP A D
Sbjct: 193 VIFDVTHSLGRRA-QALD---------------LALAGMATRLAGLFLESHPDPKLAKCD 236
Query: 181 GPTQWPLR 188
GP+ PL
Sbjct: 237 GPSALPLH 244
>pdb|3STG|A Chain A, Crystal Structure Of A58p, Del(N59), And Loop 7 Truncated
Mutant Of 3- Deoxy-D-Manno-Octulosonate 8-Phosphate
Synthase (Kdo8ps) From Neisseria Meningitidis
pdb|3STG|B Chain B, Crystal Structure Of A58p, Del(N59), And Loop 7 Truncated
Mutant Of 3- Deoxy-D-Manno-Octulosonate 8-Phosphate
Synthase (Kdo8ps) From Neisseria Meningitidis
pdb|3STG|C Chain C, Crystal Structure Of A58p, Del(N59), And Loop 7 Truncated
Mutant Of 3- Deoxy-D-Manno-Octulosonate 8-Phosphate
Synthase (Kdo8ps) From Neisseria Meningitidis
pdb|3STG|D Chain D, Crystal Structure Of A58p, Del(N59), And Loop 7 Truncated
Mutant Of 3- Deoxy-D-Manno-Octulosonate 8-Phosphate
Synthase (Kdo8ps) From Neisseria Meningitidis
Length = 268
Score = 165 bits (417), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/188 (47%), Positives = 118/188 (62%), Gaps = 18/188 (9%)
Query: 3 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKII 62
EGLKI EKVK + IP++TDVHE QC+ V +V D+IQ+PAFL RQTDL+VA AKTG ++
Sbjct: 72 EGLKIFEKVKAEFGIPVITDVHEPHQCQPVAEVCDVIQLPAFLARQTDLVVAMAKTGNVV 131
Query: 63 NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREA--NCP 120
NIKK QF + S M N EK AGN +++CERG+ FGY++L+VD M++ N P
Sbjct: 132 NIKKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDMLGFGVMKQTCGNLP 191
Query: 121 VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVD 180
V+ DVTHSL + A + LD +A +A + G+F+E H DP A D
Sbjct: 192 VIFDVTHSLGRRA-QALD---------------LALAGMATRLAGLFLESHPDPKLAKCD 235
Query: 181 GPTQWPLR 188
GP+ PL
Sbjct: 236 GPSALPLH 243
>pdb|3E9A|A Chain A, Crystal Structure Of 2-dehydro-3-deoxyphosphooctonate
Aldolase From Vibrio Cholerae O1 Biovar Eltor Str.
N16961
Length = 286
Score = 159 bits (403), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 83/187 (44%), Positives = 117/187 (62%), Gaps = 7/187 (3%)
Query: 3 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKII 62
EG+KI +++K + + I+TDVH Q + V V D+IQ+PAFL RQTDL+ A AKTG +I
Sbjct: 79 EGMKIFQELKETFGVKIITDVHTEAQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVI 138
Query: 63 NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREAN--CP 120
N+KK QF + + N EK GN V++CERG+ GY++L+VD M++A+ P
Sbjct: 139 NVKKPQFMSPGQVGNIVEKFAECGNDKVILCERGSCHGYDNLVVDMLGFGVMKQASNGSP 198
Query: 121 VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVD 180
++ DVTHSLQ D G ASGG RE +A+ +A G+ G+F+E H +P A D
Sbjct: 199 IIFDVTHSLQM-----RDPSGAASGGRREQTVELAKAGLATGIAGLFIEAHPNPDKARCD 253
Query: 181 GPTQWPL 187
GP+ PL
Sbjct: 254 GPSALPL 260
>pdb|3FS2|A Chain A, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Bruciella Melitensis At 1.85a Resolution
pdb|3FS2|B Chain B, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Bruciella Melitensis At 1.85a Resolution
Length = 298
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/204 (45%), Positives = 127/204 (62%), Gaps = 5/204 (2%)
Query: 3 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKII 62
+ L++ +K Y P++TD+H QC V V D++QIPAFLCRQTDLL+AAA+TG+++
Sbjct: 99 KALEVFSDLKKEYGFPVLTDIHTEEQCAAVAPVVDVLQIPAFLCRQTDLLIAAARTGRVV 158
Query: 63 NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVV 122
N+KKGQF A M N K+ +GNPNV+ ERG FGYN L+ D R L M PV+
Sbjct: 159 NVKKGQFLAPWDMKNVLAKITESGNPNVLATERGVSFGYNTLVSDMRALPIMAGLGAPVI 218
Query: 123 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGP 182
D THS+QQP G+ ++GG RE + +AR A+AVGV G F+E H+DP NAP DGP
Sbjct: 219 FDATHSVQQPGGQG-----GSTGGQREFVETLARAAVAVGVAGFFIETHEDPDNAPSDGP 273
Query: 183 TQWPLRNXXXXXXXXVAIAKVSKG 206
P+ +A +++K
Sbjct: 274 NMVPIDKMPALLEKLMAFDRIAKA 297
>pdb|3NVT|A Chain A, 1.95 Angstrom Crystal Structure Of A Bifunctional
3-Deoxy-7- Phosphoheptulonate SynthaseCHORISMATE MUTASE
(AROA) FROM LISTERIA Monocytogenes Egd-E
pdb|3NVT|B Chain B, 1.95 Angstrom Crystal Structure Of A Bifunctional
3-Deoxy-7- Phosphoheptulonate SynthaseCHORISMATE MUTASE
(AROA) FROM LISTERIA Monocytogenes Egd-E
pdb|3TFC|A Chain A, 1.95 Angstrom Crystal Structure Of A Bifunctional
3-Deoxy-7- Phosphoheptulonate SynthaseCHORISMATE MUTASE
(AROA) FROM LISTERIA Monocytogenes Egd-E In Complex With
Phosphoenolpyruvate
pdb|3TFC|B Chain B, 1.95 Angstrom Crystal Structure Of A Bifunctional
3-Deoxy-7- Phosphoheptulonate SynthaseCHORISMATE MUTASE
(AROA) FROM LISTERIA Monocytogenes Egd-E In Complex With
Phosphoenolpyruvate
Length = 385
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 91/187 (48%), Gaps = 21/187 (11%)
Query: 2 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKI 61
+EGLKIL++V Y + +++++ E D+IQI A + +LL AA + K
Sbjct: 192 LEGLKILKRVSDEYGLGVISEIVTPADIEVALDYVDVIQIGARNMQNFELLKAAGRVDKP 251
Query: 62 INIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWM----REA 117
I +K+G + +AE + GN +++CERG + Y + ++ + +E
Sbjct: 252 ILLKRGLSATIEEFIGAAEYIMSQGNGKIILCERG-IRTYEKATRNTLDISAVPILKKET 310
Query: 118 NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNA 177
+ PV+ DVTHS +G L+PC A+ A+A+ DGV EVH DP A
Sbjct: 311 HLPVMVDVTHS---------------TGRKDLLLPC-AKAALAIEADGVMAEVHPDPAVA 354
Query: 178 PVDGPTQ 184
D Q
Sbjct: 355 LSDSAQQ 361
>pdb|1ZCO|A Chain A, Crystal Structure Of Pyrococcus Furiosus
3-Deoxy-D-Arabino- Heptulosonate 7-Phosphate Synthase
pdb|1ZCO|B Chain B, Crystal Structure Of Pyrococcus Furiosus
3-Deoxy-D-Arabino- Heptulosonate 7-Phosphate Synthase
Length = 262
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 90/185 (48%), Gaps = 19/185 (10%)
Query: 3 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKII 62
+ L+ + + Y + VT+V +T E V K +DI+QI A + +LL K +
Sbjct: 74 KALRWMREAADEYGLVTVTEVMDTRHVELVAKYSDILQIGARNSQNFELLKEVGKVENPV 133
Query: 63 NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERG--TMFGYNDLIVDPRNLEWMRE-ANC 119
+K+G ++ SAE + GN NV++CERG T +D + ++E ++
Sbjct: 134 LLKRGMGNTIQELLYSAEYIMAQGNENVILCERGIRTFETATRFTLDISAVPVVKELSHL 193
Query: 120 PVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPV 179
P++ D +H PAG+ R L+ +A+ A A+G DG+ +EVH +P A
Sbjct: 194 PIIVDPSH----PAGR------------RSLVIPLAKAAYAIGADGIMVEVHPEPEKALS 237
Query: 180 DGPTQ 184
D Q
Sbjct: 238 DSQQQ 242
>pdb|4GRS|A Chain A, Crystal Structure Of A Chimeric Dah7ps
pdb|4GRS|B Chain B, Crystal Structure Of A Chimeric Dah7ps
pdb|4GRS|C Chain C, Crystal Structure Of A Chimeric Dah7ps
pdb|4GRS|D Chain D, Crystal Structure Of A Chimeric Dah7ps
Length = 333
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 90/185 (48%), Gaps = 19/185 (10%)
Query: 3 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKII 62
+ L+ + + Y + VT+V +T E V K +DI+QI A + +LL K +
Sbjct: 145 KALRWMREAADEYGLVTVTEVMDTRHVELVAKYSDILQIGARNSQNFELLKEVGKVENPV 204
Query: 63 NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERG--TMFGYNDLIVDPRNLEWMRE-ANC 119
+K+G ++ SAE + GN NV++CERG T +D + ++E ++
Sbjct: 205 LLKRGMGNTIQELLYSAEYIMAQGNENVILCERGIRTFETATRFTLDISAVPVVKELSHL 264
Query: 120 PVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPV 179
P++ D +H PAG+ R L+ +A+ A A+G DG+ +EVH +P A
Sbjct: 265 PIIVDPSH----PAGR------------RSLVIPLAKAAYAIGADGIMVEVHPEPEKALS 308
Query: 180 DGPTQ 184
D Q
Sbjct: 309 DSQQQ 313
>pdb|3PG8|A Chain A, Truncated Form Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Thermotoga Maritima
pdb|3PG8|B Chain B, Truncated Form Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Thermotoga Maritima
Length = 272
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 19/182 (10%)
Query: 3 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKII 62
+GL+ L + Y + +VT+ +V + ADIIQI A + LL A K +
Sbjct: 79 KGLEYLREAADKYGMYVVTEALGEDDLPKVAEYADIIQIGARNAQNFRLLSKAGSYNKPV 138
Query: 63 NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERG--TMFGYNDLIVDPRNLEWMR-EANC 119
+K+G + SAE + +GN +++CERG T +D + +R E++
Sbjct: 139 LLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKESHL 198
Query: 120 PVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPV 179
P++ D +H SGG R+L+ ++R AIAVG G+ +EVH +P A
Sbjct: 199 PILVDPSH----------------SGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALS 242
Query: 180 DG 181
DG
Sbjct: 243 DG 244
>pdb|1RZM|A Chain A, Crystal Structure Of
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
(Dahps) From Thermotoga Maritima Complexed With Cd2+,
Pep And E4p
pdb|1RZM|B Chain B, Crystal Structure Of
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
(Dahps) From Thermotoga Maritima Complexed With Cd2+,
Pep And E4p
pdb|3PG9|A Chain A, Thermotoga Maritima Dah7p Synthase In Complex With
Inhibitor
pdb|3PG9|B Chain B, Thermotoga Maritima Dah7p Synthase In Complex With
Inhibitor
pdb|3PG9|C Chain C, Thermotoga Maritima Dah7p Synthase In Complex With
Inhibitor
pdb|3PG9|D Chain D, Thermotoga Maritima Dah7p Synthase In Complex With
Inhibitor
pdb|3PG9|E Chain E, Thermotoga Maritima Dah7p Synthase In Complex With
Inhibitor
pdb|3PG9|F Chain F, Thermotoga Maritima Dah7p Synthase In Complex With
Inhibitor
pdb|3PG9|G Chain G, Thermotoga Maritima Dah7p Synthase In Complex With
Inhibitor
pdb|3PG9|H Chain H, Thermotoga Maritima Dah7p Synthase In Complex With
Inhibitor
Length = 338
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 19/182 (10%)
Query: 3 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKII 62
+GL+ L + Y + +VT+ +V + ADIIQI A + LL A K +
Sbjct: 145 KGLEYLREAADKYGMYVVTEALGEDDLPKVAEYADIIQIGARNAQNFRLLSKAGSYNKPV 204
Query: 63 NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERG--TMFGYNDLIVDPRNLEWMR-EANC 119
+K+G + SAE + +GN +++CERG T +D + +R E++
Sbjct: 205 LLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKESHL 264
Query: 120 PVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPV 179
P++ D +H SGG R+L+ ++R AIAVG G+ +EVH +P A
Sbjct: 265 PILVDPSH----------------SGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALS 308
Query: 180 DG 181
DG
Sbjct: 309 DG 310
>pdb|1VR6|A Chain A, Crystal Structure Of Phospho-2-dehydro-3-deoxyheptonate
Aldolase (dahp Synthase) (tm0343) From Thermotoga
Maritima At 1.92 A Resolution
pdb|1VR6|B Chain B, Crystal Structure Of Phospho-2-dehydro-3-deoxyheptonate
Aldolase (dahp Synthase) (tm0343) From Thermotoga
Maritima At 1.92 A Resolution
pdb|1VR6|C Chain C, Crystal Structure Of Phospho-2-dehydro-3-deoxyheptonate
Aldolase (dahp Synthase) (tm0343) From Thermotoga
Maritima At 1.92 A Resolution
pdb|1VR6|D Chain D, Crystal Structure Of Phospho-2-dehydro-3-deoxyheptonate
Aldolase (dahp Synthase) (tm0343) From Thermotoga
Maritima At 1.92 A Resolution
Length = 350
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 19/182 (10%)
Query: 3 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKII 62
+GL+ L + Y + +VT+ +V + ADIIQI A + LL A K +
Sbjct: 157 KGLEYLREAADKYGMYVVTEALGEDDLPKVAEYADIIQIGARNAQNFRLLSKAGSYNKPV 216
Query: 63 NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERG--TMFGYNDLIVDPRNLEWMR-EANC 119
+K+G + SAE + +GN +++CERG T +D + +R E++
Sbjct: 217 LLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKESHL 276
Query: 120 PVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPV 179
P++ D +H SGG R+L+ ++R AIAVG G+ +EVH +P A
Sbjct: 277 PILVDPSH----------------SGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALS 320
Query: 180 DG 181
DG
Sbjct: 321 DG 322
>pdb|1VS1|A Chain A, Crystal Structure Of 3-Deoxy-D-Arabino-Heptulosonate-7-
Phosphate Synthase (Dahp Synthase) From Aeropyrum Pernix
In Complex With Mn2+ And Pep
pdb|1VS1|B Chain B, Crystal Structure Of 3-Deoxy-D-Arabino-Heptulosonate-7-
Phosphate Synthase (Dahp Synthase) From Aeropyrum Pernix
In Complex With Mn2+ And Pep
pdb|1VS1|C Chain C, Crystal Structure Of 3-Deoxy-D-Arabino-Heptulosonate-7-
Phosphate Synthase (Dahp Synthase) From Aeropyrum Pernix
In Complex With Mn2+ And Pep
pdb|1VS1|D Chain D, Crystal Structure Of 3-Deoxy-D-Arabino-Heptulosonate-7-
Phosphate Synthase (Dahp Synthase) From Aeropyrum Pernix
In Complex With Mn2+ And Pep
Length = 276
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 86/171 (50%), Gaps = 19/171 (11%)
Query: 17 IPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMV 76
+P+VT+V + E V + AD++QI A + LL ++GK + +K+G ++
Sbjct: 103 LPVVTEVLDPRHVETVSRYADMLQIGARNMQNFPLLREVGRSGKPVLLKRGFGNTVEELL 162
Query: 77 NSAEKVRLAGNPNVMVCERG--TMFGYNDLIVDPRNLEWMREA-NCPVVADVTHSLQQPA 133
+AE + L GN V++ ERG T +D + ++EA + PV+ D +H PA
Sbjct: 163 AAAEYILLEGNWQVVLVERGIRTFEPSTRFTLDVAAVAVLKEATHLPVIVDPSH----PA 218
Query: 134 GKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQ 184
G+ R L+P +A+ +A G DG+ +EVH +P A D Q
Sbjct: 219 GR------------RSLVPALAKAGLAAGADGLIVEVHPNPEEALSDAKQQ 257
>pdb|3N2Y|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With P-(2- Tetrazolyl)-Phenylalanine
pdb|3N2Y|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With P-(2- Tetrazolyl)-Phenylalanine
Length = 314
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 15/71 (21%)
Query: 109 RNLEWM-REANCPVVADVTHSLQQPAGKKLDGGGVASGGL---------RELIP----CI 154
R++E + RE P VA+V + + Q G GG VA GG+ REL+P CI
Sbjct: 132 RSMELIAREDENPKVAEVIYPIMQVNGIHYVGGDVAVGGMEQRKIHMLARELLPKKVVCI 191
Query: 155 ARTAIAVGVDG 165
+ G+DG
Sbjct: 192 -HNPVLTGLDG 201
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 2051
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 50 DLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPR 109
D + A G I + G + +++ M + + V V E+G+ FG N + V+P
Sbjct: 605 DFVAATTNAGYTIELAGGGYFSAAGMTAAIDSV-------VSQIEKGSTFGINLIYVNPF 657
Query: 110 NLEW 113
L+W
Sbjct: 658 MLQW 661
>pdb|3QPM|A Chain A, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena
Crocea
pdb|3QPM|B Chain B, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena
Crocea
pdb|3QPM|C Chain C, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena
Crocea
pdb|3QPM|D Chain D, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena
Crocea
pdb|3QPM|E Chain E, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena
Crocea
Length = 240
Score = 30.4 bits (67), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 87 NPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGG 146
N V+ C + F + I+ PR + P+++D+TH + + G L+ G G
Sbjct: 111 NTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLRG 170
Query: 147 L 147
L
Sbjct: 171 L 171
>pdb|1DJ2|A Chain A, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
pdb|1DJ2|B Chain B, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
Length = 443
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 117 ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEV 170
A C A+ H++ GKK V SG L E C+ + V + G+F E+
Sbjct: 49 ARCQGGANAGHTIYNSEGKKFALHLVPSGILNEDTTCVIGNGVVVHLPGLFKEI 102
>pdb|2PN8|A Chain A, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
pdb|2PN8|B Chain B, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
pdb|2PN8|C Chain C, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
pdb|2PN8|D Chain D, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
pdb|2PN8|E Chain E, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
pdb|2PN8|F Chain F, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
pdb|2PN8|G Chain G, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
pdb|2PN8|H Chain H, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
pdb|2PN8|I Chain I, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
pdb|2PN8|J Chain J, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
Length = 211
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 87 NPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGG 146
N V+ C + F + I PR + P+++D+TH + + G L+ G G
Sbjct: 82 NTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRG 141
Query: 147 L 147
L
Sbjct: 142 L 142
>pdb|3TJK|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant
In Reduced Form
pdb|3TJK|B Chain B, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant
In Reduced Form
pdb|3TJK|C Chain C, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant
In Reduced Form
pdb|3TJK|D Chain D, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant
In Reduced Form
pdb|3TJK|E Chain E, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant
In Reduced Form
Length = 254
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 87 NPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGG 146
N V+ C + F + I PR + P+++D+TH + + G L+ G G
Sbjct: 125 NTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRG 184
Query: 147 L 147
L
Sbjct: 185 L 185
>pdb|3TJF|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In
Reduced Form
pdb|3TJF|B Chain B, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In
Reduced Form
pdb|3TJF|C Chain C, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In
Reduced Form
pdb|3TJF|D Chain D, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In
Reduced Form
pdb|3TJF|E Chain E, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In
Reduced Form
pdb|3TJG|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In
Oxidized Form
pdb|3TJG|B Chain B, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In
Oxidized Form
pdb|3TJG|C Chain C, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In
Oxidized Form
pdb|3TJG|D Chain D, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In
Oxidized Form
pdb|3TJG|E Chain E, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In
Oxidized Form
Length = 254
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 87 NPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGG 146
N V+ C + F + I PR + P+++D+TH + + G L+ G G
Sbjct: 125 NTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRG 184
Query: 147 L 147
L
Sbjct: 185 L 185
>pdb|3TJB|A Chain A, Crystal Structure Of Wild-Type Human Peroxiredoxin Iv
pdb|3TJB|B Chain B, Crystal Structure Of Wild-Type Human Peroxiredoxin Iv
pdb|3TJB|C Chain C, Crystal Structure Of Wild-Type Human Peroxiredoxin Iv
pdb|3TJB|D Chain D, Crystal Structure Of Wild-Type Human Peroxiredoxin Iv
pdb|3TJB|E Chain E, Crystal Structure Of Wild-Type Human Peroxiredoxin Iv
Length = 254
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 87 NPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGG 146
N V+ C + F + I PR + P+++D+TH + + G L+ G G
Sbjct: 125 NTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRG 184
Query: 147 L 147
L
Sbjct: 185 L 185
>pdb|3TJJ|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant
In Sulfenylated Form
pdb|3TJJ|B Chain B, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant
In Sulfenylated Form
pdb|3TJJ|C Chain C, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant
In Sulfenylated Form
pdb|3TJJ|D Chain D, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant
In Sulfenylated Form
pdb|3TJJ|E Chain E, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant
In Sulfenylated Form
Length = 254
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 87 NPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGG 146
N V+ C + F + I PR + P+++D+TH + + G L+ G G
Sbjct: 125 NTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRG 184
Query: 147 L 147
L
Sbjct: 185 L 185
>pdb|3TKP|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In
The Reduced Form
pdb|3TKP|B Chain B, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In
The Reduced Form
pdb|3TKP|C Chain C, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In
The Reduced Form
pdb|3TKP|D Chain D, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In
The Reduced Form
pdb|3TKP|E Chain E, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In
The Reduced Form
pdb|3TKQ|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With Mixed Conformation
pdb|3TKQ|B Chain B, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With Mixed Conformation
pdb|3TKQ|C Chain C, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With Mixed Conformation
pdb|3TKQ|D Chain D, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With Mixed Conformation
pdb|3TKQ|E Chain E, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With Mixed Conformation
pdb|3TKS|E Chain E, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In
Three Different Redox States
Length = 246
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 87 NPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGG 146
N V+ C + F + I PR + P+++D+TH + + G L+ G G
Sbjct: 117 NTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRG 176
Query: 147 L 147
L
Sbjct: 177 L 177
>pdb|1IPA|A Chain A, Crystal Structure Of Rna 2'-O Ribose Methyltransferase
Length = 274
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 79 AEKVRLAG-----NPNVMVCERGTMFGYNDLIVDPRN-LEWMREANCPVVADVTHS 128
AE V +AG +P V+ G +F L L+W+++ N P+VA H+
Sbjct: 142 AEAVLVAGGVDLYSPQVIRNSTGVVFSLRTLAASESEVLDWIKQHNLPLVATTPHA 197
>pdb|3TKS|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In
Three Different Redox States
pdb|3TKS|B Chain B, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In
Three Different Redox States
pdb|3TKS|C Chain C, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In
Three Different Redox States
pdb|3TKS|D Chain D, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In
Three Different Redox States
Length = 246
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 87 NPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGG 146
N V+ C + F + I PR + P+++D+TH + + G L+ G G
Sbjct: 117 NTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRG 176
Query: 147 L 147
L
Sbjct: 177 L 177
>pdb|3TKR|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With T118e Mutation
pdb|3TKR|I Chain I, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With T118e Mutation
pdb|3TKR|G Chain G, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With T118e Mutation
pdb|3TKR|C Chain C, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With T118e Mutation
pdb|3TKR|F Chain F, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With T118e Mutation
pdb|3TKR|D Chain D, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With T118e Mutation
pdb|3TKR|B Chain B, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With T118e Mutation
pdb|3TKR|H Chain H, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With T118e Mutation
pdb|3TKR|E Chain E, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With T118e Mutation
pdb|3TKR|J Chain J, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With T118e Mutation
Length = 246
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 87 NPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGG 146
N V+ C + F + I PR + P+++D+TH + + G L+ G G
Sbjct: 117 NTEVVACSVDSQFEHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRG 176
Query: 147 L 147
L
Sbjct: 177 L 177
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
Length = 1245
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 73 SVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDP 108
S+ N + L N ++ CE FG+ ++I DP
Sbjct: 804 SLTFNGMAYIDLCKNGDIDYCELNARFGFRNIIADP 839
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 73 SVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDP 108
S+ N + L N ++ CE FG+ ++I DP
Sbjct: 813 SLTFNGMAYIDLCKNGDIDYCELNARFGFRNIIADP 848
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 73 SVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDP 108
S+ N + L N ++ CE FG+ ++I DP
Sbjct: 588 SLTFNGMAYIDLCKNGDIDYCELNARFGFRNIIADP 623
>pdb|3SBC|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|E Chain E, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|F Chain F, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|G Chain G, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|H Chain H, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|I Chain I, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|J Chain J, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
Length = 216
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 108 PRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGL 147
PR + N P++AD HSL + G ++ GVA GL
Sbjct: 107 PRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGL 146
>pdb|1DJ3|A Chain A, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
pdb|1DJ3|B Chain B, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
Length = 442
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 117 ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEV 170
A C A+ H++ GKK V SG L E C+ + V G F E+
Sbjct: 48 ARCQGGANAGHTIYNSEGKKFALHLVPSGILHEGTLCVVGNGAVIHVPGFFGEI 101
>pdb|1M11|2 Chain 2, Structural Model Of Human Decay-accelerating Factor Bound
To Echovirus 7 From Cryo-electron Microscopy
Length = 254
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 14/79 (17%)
Query: 46 CRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNV--MVCERGTMFGYND 103
C QTD VAA +N+ KG+ + E + G V +VC G G +
Sbjct: 127 CSQTDKEVAA------MNLTKGE------AAHKFEPTKTTGEHTVQSIVCNAGMGVGVGN 174
Query: 104 LIVDPRNLEWMREANCPVV 122
L + P +R NC +
Sbjct: 175 LTIYPHQWINLRTNNCATI 193
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,247,137
Number of Sequences: 62578
Number of extensions: 250401
Number of successful extensions: 636
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 521
Number of HSP's gapped (non-prelim): 56
length of query: 219
length of database: 14,973,337
effective HSP length: 95
effective length of query: 124
effective length of database: 9,028,427
effective search space: 1119524948
effective search space used: 1119524948
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)